F411140

General Info

Members Datasets Scaffolds Average Seq Length
332 222 664 192

Family's Representative Sequence

Representative Sequence 3300053105|Ga0500557_001422|Ga0500557_001422_2735_3304
Length 189
Sequence MRADARKNYDHILTVARDVVAEHGVNASMRDIARRAGVGLATLLRHFPTREALFEALACTKLDALADELETSTRPDEALLSWFREWVAFAQSQRGVVAMMAAAHTNPDSALYASCAAVHSASARLLARAQGEGRARADMNGDDLFGLMSALGWLVDLPSFAPRADHLAHIVASAILASPSSNDVEKAAY

Samples

Sample ID Description Type Environment
1 3300053105 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere Metagenome Endosphere
2 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
5 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
6 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
7 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
8 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
9 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
10 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
11 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
12 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
13 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
14 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
15 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
16 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
17 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
18 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
19 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
20 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
21 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
22 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
32 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
33 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
34 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
37 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
38 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
39 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300009765 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule Metagenome Nodule
44 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
45 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
46 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
47 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
48 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
51 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
52 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
53 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
54 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
55 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
56 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
57 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
60 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
61 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
63 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
64 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
67 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
68 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
70 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
71 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
72 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
93 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
94 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
95 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
96 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
97 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
98 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
99 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
100 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
101 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
102 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
103 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
104 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
105 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
106 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
107 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
108 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
109 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
110 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
111 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
112 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
113 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
114 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
115 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
116 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
117 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
118 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
119 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
120 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
121 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
122 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
123 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
124 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
125 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
126 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
127 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
128 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
129 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
130 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
131 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
132 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
133 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
134 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
135 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
136 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
137 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
138 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
139 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
140 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
141 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
142 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
143 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
144 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
145 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
146 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
147 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
148 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
149 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
150 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
151 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
152 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
153 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
154 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
155 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
156 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
157 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
158 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
159 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
160 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
161 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
162 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
163 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
164 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
165 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
166 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
167 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
168 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
169 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
170 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
171 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
172 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
173 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
174 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
175 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
176 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
177 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
178 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
179 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
180 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
181 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
182 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
183 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
184 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
185 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
186 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
187 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
188 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
189 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
190 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
191 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
192 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
193 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
194 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
195 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
196 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
197 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere
198 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
199 2513237090 Mesorhizobium sp. WSM3224 Isolate Nodule
200 2582581308 Rhizobium sp. OK494 Isolate Rhizosphere
201 2582581315 Agrobacterium rhizogenes YR147 Isolate Rhizosphere
202 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
203 2585427527 Rhizobium lusitanum YR374 Isolate Rhizosphere
204 2585427530 Rhizobium tropici YR635 Isolate Rhizosphere
205 2615840626 Rhizobium lusitanum P1-7 Isolate Nodule
206 2615840698 Rhizobium multihospitium HAMBI 2975 Isolate Nodule
207 2643221634 Rhizobium sp. Root1203 Isolate Unclassified
208 2643221688 Rhizobium sp. Root482 Isolate Unclassified
209 2667528174 Rhizobium sp. NFR17 Isolate Rhizoplane
210 2718218334 Luteibacter rhizovicinus LJ96 Isolate Rhizosphere
211 2738543005 Rhodococcus sp. OK519 Isolate Unclassified
212 2802429634 Rhizobium anhuiense S10 Isolate Nodule
213 2802429635 Rhizobium anhuiense Y27 Isolate Nodule
214 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
215 2818991453 Rhizobium lusitanum 1158 Isolate Unclassified
216 2842324504 Paraburkholderia fungorum SEMIA 4007 Isolate Nodule
217 2842348783 Paraburkholderia fungorum SEMIA 4013 Isolate Nodule
218 2857472729 Cohnella sp. R-74144 Isolate Unclassified
219 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
220 2919408235 Rhizobium miluonense 3199 Isolate Unclassified
221 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
222 8024486573 Rhizobium tubonense CCBAU 85046 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 92.77
Metatranscriptomes 0
Isolates 7.23

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 20.78
Nodule 3.01
Rhizoplane 4.52
Rhizosphere 53.92
Stem 0
Stem Tuber 0
Unclassified 1.2

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500557_001422 3300053105 Bacteria 3889
2 JGI24736J21556_1003782 3300001904 Bacteria 2609
3 JGI24740J21852_10000032 3300001979 Bacteria 46815
4 JGI24735J21928_10004551 3300002067 Bacteria 4658
5 JGI25162J39368_1000069 3300002737 Bacteria 125244
6 JGI25162J39368_1001569 3300002737 Bacteria 11666
7 JGI25154J39366_1005036 3300002738 Bacteria 2197
8 JGI25164J39214_1000224 3300002772 Bacteria 44872
9 JGI25165J46597_1000018 3300003214 Bacteria 374701
10 JGI25165J46597_1000258 3300003214 Bacteria 71060
11 rootH2_10023670 3300003320 Bacteria 2283
12 rootL2_10001447 3300003322 Bacteria 2139
13 JGI25160J50197_1000048 3300003354 Bacteria 136247
14 Ga0055525_1000431 3300003759 Bacteria 24922
15 Ga0055527_1000076 3300003760 Bacteria 79882
16 Ga0055527_1000418 3300003760 Bacteria 17565
17 Ga0055535_1000129 3300003761 Bacteria 79882
18 Ga0055535_1001033 3300003761 Bacteria 17564
19 Ga0055535_1001198 3300003761 Bacteria 14850
20 Ga0055542_1000173 3300003762 Bacteria 79882
21 Ga0055542_1000978 3300003762 Bacteria 18593
22 Ga0055542_1001026 3300003762 Bacteria 17564
23 Ga0055529_1000200 3300003763 Bacteria 79875
24 Ga0055529_1000820 3300003763 Bacteria 18592
25 Ga0055529_1000858 3300003763 Bacteria 17564
26 Ga0065165_1000821 3300005262 Bacteria 41157
27 Ga0065165_1003193 3300005262 Bacteria 11981
28 Ga0065707_10115309 3300005295 Bacteria 2271
29 Ga0070661_100348166 3300005344 Bacteria 1162
30 Ga0070668_100031787 3300005347 Bacteria 4016
31 Ga0070663_100071254 3300005455 Bacteria 2529
32 Ga0070706_100305397 3300005467 Bacteria 1484
33 Ga0068853_100178601 3300005539 Bacteria 1924
34 Ga0070665_100112315 3300005548 Bacteria 2727
35 Ga0068855_100402086 3300005563 Bacteria 1501
36 Ga0068854_100036980 3300005578 Bacteria 3424
37 Ga0068856_100000858 3300005614 Bacteria 32667
38 Ga0068856_100016251 3300005614 Bacteria 7200
39 Ga0068856_100134689 3300005614 Bacteria 2476
40 Ga0068856_100265982 3300005614 Bacteria 1730
41 Ga0068864_100714546 3300005618 Bacteria 980
42 Ga0068851_10044869 3300005834 Bacteria 2233
43 Ga0068863_100090368 3300005841 Bacteria 2904
44 Ga0068858_100170235 3300005842 Bacteria 2054
45 Ga0068860_100127231 3300005843 Bacteria 2442
46 Ga0068862_100000163 3300005844 Bacteria 74506
47 Ga0070717_10049683 3300006028 Bacteria 3444
48 Ga0105240_10000405 3300009093 Bacteria 80014
49 Ga0105240_10000440 3300009093 Bacteria 76796
50 Ga0105240_10025357 3300009093 Bacteria 7794
51 Ga0105240_10273339 3300009093 Bacteria 1944
52 Ga0105240_10879281 3300009093 Bacteria 965
53 Ga0105247_10082943 3300009101 Bacteria 2024
54 Ga0105243_10807535 3300009148 Bacteria 925
55 Ga0105241_10179755 3300009174 Bacteria 1754
56 Ga0105241_10467459 3300009174 Bacteria 1119
57 Ga0105248_10139013 3300009177 Bacteria 2740
58 Ga0105237_10001847 3300009545 Bacteria 27211
59 Ga0105237_10002775 3300009545 Bacteria 21286
60 Ga0105238_10003232 3300009551 Bacteria 16279
61 Ga0105238_10052892 3300009551 Bacteria 4081
62 Ga0105238_10201427 3300009551 Bacteria 1966
63 Ga0105249_10000103 3300009553 Bacteria 118397
64 Ga0123341_1017407 3300009765 Bacteria 6294
65 Ga0123342_1032389 3300009766 Bacteria 2454
66 Ga0105239_10000070 3300010375 Bacteria 144044
67 Ga0105239_10001490 3300010375 Bacteria 31138
68 Ga0105239_10004396 3300010375 Bacteria 16874
69 Ga0157373_10413676 3300013100 Bacteria 967
70 Ga0157370_10001822 3300013104 Bacteria 26247
71 Ga0157369_10095085 3300013105 Bacteria 3180
72 Ga0163162_10495932 3300013306 Bacteria 1352
73 Ga0163162_11331684 3300013306 Bacteria 816
74 Ga0157372_10167660 3300013307 Bacteria 2540
75 Ga0163163_10450230 3300014325 Bacteria 1348
76 Ga0182008_10183629 3300014497 Bacteria 1059
77 Ga0157379_10475578 3300014968 Bacteria 1156
78 Ga0182006_1046825 3300015261 Bacteria 1679
79 Ga0182005_1008089 3300015265 Bacteria 3116
80 Ga0213872_10145128 3300021361 Bacteria 1039
81 Ga0209672_100017 3300025228 Bacteria 514236
82 Ga0209672_100103 3300025228 Bacteria 104244
83 Ga0209672_100255 3300025228 Bacteria 39677
84 Ga0209563_100238 3300025230 Bacteria 26691
85 Ga0207427_100045 3300025231 Bacteria 241857
86 Ga0209437_100022 3300025233 Bacteria 625694
87 Ga0209437_100140 3300025233 Bacteria 171696
88 Ga0209258_100038 3300025242 Bacteria 398959
89 Ga0209258_100148 3300025242 Bacteria 162743
90 Ga0209258_100232 3300025242 Bacteria 104244
91 Ga0209646_1002660 3300025246 Bacteria 3831
92 Ga0209026_1025018 3300025250 Bacteria 902
93 Ga0209677_100189 3300025253 Bacteria 50237
94 Ga0209148_1000009 3300025254 Bacteria 1395625
95 Ga0209148_1000138 3300025254 Bacteria 167277
96 Ga0209148_1000206 3300025254 Bacteria 104244
97 Ga0209759_1001290 3300025256 Bacteria 14915
98 Ga0209233_1000031 3300025261 Bacteria 624646
99 Ga0209233_1000116 3300025261 Bacteria 241857
100 Ga0209233_1000139 3300025261 Bacteria 197070
101 Ga0209455_1000032 3300025272 Bacteria 514243
102 Ga0209455_1000124 3300025272 Bacteria 167073
103 Ga0209455_1000179 3300025272 Bacteria 104244
104 Ga0209130_1019519 3300025284 Bacteria 1569
105 Ga0209256_1017737 3300025299 Bacteria 2349
106 Ga0207426_1000103 3300025302 Bacteria 250320
107 Ga0207710_10003100 3300025900 Bacteria 7460
108 Ga0207647_10009449 3300025904 Bacteria 6928
109 Ga0207647_10010068 3300025904 Bacteria 6689
110 Ga0207647_10070392 3300025904 Bacteria 2113
111 Ga0207684_10412673 3300025910 Bacteria 1160
112 Ga0207654_10160441 3300025911 Bacteria 1452
113 Ga0207695_10000609 3300025913 Bacteria 71895
114 Ga0207695_10001319 3300025913 Bacteria 42054
115 Ga0207695_10116073 3300025913 Bacteria 2651
116 Ga0207695_10773729 3300025913 Bacteria 840
117 Ga0207671_10000132 3300025914 Bacteria 115312
118 Ga0207671_10000397 3300025914 Bacteria 60703
119 Ga0207671_10002482 3300025914 Bacteria 19710
120 Ga0207694_10090076 3300025924 Bacteria 2420
121 Ga0207694_10212217 3300025924 Bacteria 1577
122 Ga0207711_10051667 3300025941 Bacteria 3521
123 Ga0207711_10251234 3300025941 Bacteria 1624
124 Ga0207667_10758315 3300025949 Bacteria 969
125 Ga0207712_10000069 3300025961 Bacteria 127318
126 Ga0207668_10060909 3300025972 Bacteria 2651
127 Ga0207640_10085423 3300025981 Bacteria 2170
128 Ga0207658_10141514 3300025986 Bacteria 1947
129 Ga0207639_10130119 3300026041 Bacteria 2082
130 Ga0207639_10256123 3300026041 Bacteria 1528
131 Ga0207702_10013290 3300026078 Bacteria 6847
132 Ga0207702_10021572 3300026078 Bacteria 5333
133 Ga0207702_10309040 3300026078 Bacteria 1503
134 Ga0207641_10131219 3300026088 Bacteria 2250
135 Ga0207698_10224111 3300026142 Bacteria 1701
136 Ga0268266_10047331 3300028379 Bacteria 3684
137 Ga0268266_10501193 3300028379 Bacteria 1159
138 Ga0268265_10000182 3300028380 Bacteria 74651
139 Ga0268264_10022164 3300028381 Bacteria 5185
140 Ga0307517_10022697 3300028786 Bacteria 7850
141 Ga0307515_10001108 3300028794 Bacteria 61619
142 Ga0307509_10004066 3300031507 Bacteria 21456
143 Ga0307508_10023120 3300031616 Bacteria 5646
144 Ga0307508_10070640 3300031616 Bacteria 3064
145 Ga0307414_10886338 3300032004 Unclassified 817
146 Ga0307510_10038346 3300033180 Bacteria 5299
147 Ga0373953_0350797 3300035117 Bacteria 647
148 Ga0395901_0109160 3300038443 Bacteria 2905
149 Ga0436361_0151952 3300039447 Bacteria 1796
150 Ga0436361_0822522 3300039447 Bacteria 5528
151 Ga0466965_0553406 3300044683 Bacteria 650
152 Ga0466963_0063296 3300044694 Bacteria 2475
153 Ga0466958_0188144 3300045836 Bacteria 1311
154 Ga0466967_0107058 3300045976 Bacteria 2564
155 Ga0495617_000019 3300046452 Bacteria 247938
156 Ga0495592_0000625 3300046454 Bacteria 24760
157 Ga0495603_0122099 3300046455 Bacteria 1518
158 Ga0495629_0011432 3300046459 Bacteria 6448
159 Ga0495638_0037141 3300046460 Bacteria 3100
160 Ga0495638_0105388 3300046460 Bacteria 1680
161 Ga0495650_0000705 3300046471 Bacteria 42734
162 Ga0495580_0072417 3300046472 Bacteria 2406
163 Ga0495580_0541163 3300046472 Bacteria 774
164 Ga0495605_0001214 3300046474 Bacteria 17178
165 Ga0495605_0240494 3300046474 Bacteria 777
166 Ga0495662_0079322 3300046476 Unclassified 1596
167 Ga0495664_0254172 3300046477 Bacteria 1063
168 Ga0495584_0183800 3300046491 Bacteria 1062
169 Ga0495585_0070259 3300046492 Bacteria 1910
170 Ga0495607_0080223 3300046501 Bacteria 1795
171 Ga0495607_0273348 3300046501 Bacteria 804
172 Ga0495583_0002813 3300046506 Bacteria 14240
173 Ga0495583_0010891 3300046506 Bacteria 5258
174 Ga0495583_0029317 3300046506 Bacteria 2694
175 Ga0495606_0000905 3300046507 Bacteria 44064
176 Ga0495620_0000525 3300046515 Bacteria 24641
177 Ga0495620_0005362 3300046515 Bacteria 7166
178 Ga0495628_0000305 3300046516 Bacteria 44171
179 Ga0495631_0002990 3300046518 Bacteria 9353
180 Ga0495632_0002612 3300046519 Bacteria 13575
181 Ga0495632_0004104 3300046519 Bacteria 10034
182 Ga0495632_0028468 3300046519 Bacteria 2916
183 Ga0495643_0008026 3300046522 Bacteria 6730
184 Ga0495648_0043085 3300046524 Bacteria 2833
185 Ga0495648_0176956 3300046524 Bacteria 1088
186 Ga0495642_0068997 3300046528 Bacteria 1476
187 Ga0495640_0119790 3300046533 Bacteria 1712
188 Ga0495609_0188787 3300046538 Bacteria 865
189 Ga0495597_0056580 3300046542 Bacteria 1717
190 Ga0495622_0004997 3300046557 Bacteria 6147
191 Ga0495668_0005072 3300046616 Bacteria 9065
192 Ga0495625_0002122 3300046660 Bacteria 22125
193 Ga0495625_0147768 3300046660 Bacteria 1581
194 Ga0495625_0305815 3300046660 Bacteria 1016
195 Ga0495588_0140000 3300046674 Bacteria 1278
196 Ga0495646_0383613 3300046680 Bacteria 732
197 Ga0495613_0361965 3300046689 Bacteria 994
198 Ga0495670_0206005 3300046691 Bacteria 1042
199 Ga0495649_0000518 3300046694 Bacteria 32867
200 Ga0495600_0032078 3300046809 Bacteria 3408
201 Ga0495600_0331131 3300046809 Unclassified 956
202 Ga0495660_0011498 3300046810 Bacteria 5135
203 Ga0495660_0043981 3300046810 Bacteria 2459
204 Ga0495604_0003124 3300047317 Bacteria 13238
205 Ga0495604_0009589 3300047317 Bacteria 7657
206 Ga0495674_0618519 3300047319 Unclassified 857
207 Ga0495687_001114 3300047443 Bacteria 26101
208 Ga0495687_003312 3300047443 Bacteria 11815
209 Ga0495687_006869 3300047443 Bacteria 6858
210 Ga0495687_106642 3300047443 Bacteria 1039
211 Ga0495685_011054 3300047447 Bacteria 3038
212 Ga0495681_0104227 3300047470 Bacteria 1236
213 Ga0495686_0015386 3300047472 Bacteria 5225
214 Ga0496100_0000666 3300048903 Bacteria 16319
215 Ga0496102_0048177 3300048905 Bacteria 3875
216 Ga0496103_0010379 3300048906 Bacteria 5512
217 Ga0496105_0002435 3300048908 Bacteria 13482
218 Ga0496105_0240238 3300048908 Bacteria 1470
219 Ga0496105_0470028 3300048908 Bacteria 991
220 Ga0496105_0841245 3300048908 Bacteria 695
221 Ga0496106_0016606 3300048909 Bacteria 5447
222 Ga0496107_0134282 3300048910 Bacteria 1828
223 Ga0496112_0152575 3300048915 Bacteria 2277
224 Ga0496113_0050266 3300048916 Bacteria 3108
225 Ga0496113_0148289 3300048916 Bacteria 1849
226 Ga0496113_0168101 3300048916 Bacteria 1736
227 Ga0496115_0000191 3300048918 Bacteria 56876
228 Ga0496116_0012188 3300048919 Bacteria 7034
229 Ga0496117_0000445 3300048920 Bacteria 68610
230 Ga0496117_0002182 3300048920 Bacteria 25529
231 Ga0496117_0116227 3300048920 Bacteria 1654
232 Ga0496117_0132525 3300048920 Bacteria 1507
233 Ga0496117_0132528 3300048920 Bacteria 1507
234 Ga0496118_0003446 3300048921 Bacteria 19915
235 Ga0496118_0029046 3300048921 Bacteria 4644
236 Ga0496118_0143609 3300048921 Bacteria 1507
237 Ga0496119_0000048 3300048922 Bacteria 185846
238 Ga0496119_0000708 3300048922 Bacteria 44757
239 Ga0496119_0005725 3300048922 Bacteria 11780
240 Ga0496119_0016115 3300048922 Bacteria 5707
241 Ga0496119_0039807 3300048922 Bacteria 3017
242 Ga0496119_0042650 3300048922 Bacteria 2875
243 Ga0496120_0000133 3300048923 Bacteria 126194
244 Ga0496120_0006832 3300048923 Bacteria 8641
245 Ga0496120_0007939 3300048923 Bacteria 7814
246 Ga0496120_0025942 3300048923 Bacteria 3629
247 Ga0496120_0099184 3300048923 Bacteria 1542
248 Ga0496120_0240394 3300048923 Bacteria 855
249 Ga0496121_0000101 3300048924 Bacteria 195984
250 Ga0496121_0001605 3300048924 Bacteria 37523
251 Ga0496121_0025667 3300048924 Bacteria 5584
252 Ga0496121_0028242 3300048924 Bacteria 5227
253 Ga0496122_0005052 3300048925 Bacteria 15944
254 Ga0496122_0055695 3300048925 Bacteria 2955
255 Ga0496122_0111103 3300048925 Bacteria 1799
256 Ga0496122_0138568 3300048925 Bacteria 1527
257 Ga0496123_0026956 3300048926 Bacteria 4291
258 Ga0496123_0037193 3300048926 Bacteria 3441
259 Ga0496123_0221221 3300048926 Bacteria 954
260 Ga0496123_0351246 3300048926 Bacteria 685
261 Ga0496124_0090125 3300048927 Bacteria 2502
262 Ga0496124_0178694 3300048927 Bacteria 1635
263 Ga0496124_0243532 3300048927 Bacteria 1335
264 Ga0496125_0114846 3300048928 Bacteria 1938
265 Ga0496125_0292011 3300048928 Bacteria 1003
266 Ga0496126_0000888 3300048929 Bacteria 52505
267 Ga0496126_0236653 3300048929 Bacteria 1527
268 Ga0501032_0076031 3300049569 Bacteria 2236
269 Ga0501034_0287775 3300049571 Bacteria 1582
270 Ga0501036_0022012 3300049572 Bacteria 5361
271 Ga0501037_0006008 3300049573 Bacteria 8862
272 Ga0501038_0047987 3300049574 Bacteria 3697
273 Ga0501043_0003130 3300049579 Bacteria 13723
274 Ga0501043_0454745 3300049579 Bacteria 962
275 Ga0501046_0028148 3300049580 Bacteria 4579
276 Ga0501046_0282616 3300049580 Bacteria 1215
277 Ga0501047_0106773 3300049581 Bacteria 2681
278 Ga0501048_0038032 3300049582 Bacteria 3454
279 Ga0501035_0115587 3300049822 Bacteria 2348
280 Ga0501044_0054181 3300049823 Bacteria 4124
281 Ga0501044_0279160 3300049823 Bacteria 1604
282 Ga0495601_0167906 3300053077 Bacteria 1434
283 Ga0500610_0009973 3300053079 Bacteria 4248
284 Ga0500578_0041543 3300053086 Bacteria 2953
285 Ga0500643_001465 3300053087 Bacteria 13552
286 Ga0500643_002846 3300053087 Bacteria 8622
287 Ga0500643_067369 3300053087 Bacteria 996
288 Ga0500644_0001038 3300053088 Bacteria 8335
289 Ga0500646_0203508 3300053090 Bacteria 680
290 Ga0500651_0188498 3300053093 Bacteria 1222
291 Ga0500555_108173 3300053103 Bacteria 701
292 Ga0500556_0126136 3300053104 Bacteria 1001
293 Ga0500569_003484 3300053109 Bacteria 3224
294 Ga0500594_0001650 3300053118 Bacteria 4858
295 Ga0500594_0001702 3300053118 Bacteria 4796
296 Ga0500608_002035 3300053122 Bacteria 7250
297 Ga0500608_087616 3300053122 Bacteria 1460
298 Ga0500564_083594 3300053138 Bacteria 1428
299 Ga0500568_0002118 3300053139 Bacteria 11985
300 Ga0500568_0022610 3300053139 Bacteria 2686
301 Ga0500588_0076198 3300053146 Bacteria 1112
302 Ga0500590_001359 3300053148 Bacteria 9970
303 Ga0500604_0004034 3300053151 Bacteria 3915
304 Ga0500616_0000345 3300053153 Bacteria 66134
305 Ga0500570_175422 3300053724 Bacteria 704
306 Ga0500645_015932 3300053730 Bacteria 2375
307 Ga0500596_018161 3300053735 Bacteria 1055
308 Ga0466962_0183195 3300061719 Bacteria 1021
309 2513611591 2513237090 Bacteria 7096802
310 2585283285 2582581308 Bacteria 7413247
311 2585328775 2582581315 Bacteria 7318924
312 2585336713 2582581316 Bacteria 7774528
313 2585534694 2585427527 Bacteria 7273426
314 2585556595 2585427530 Bacteria 7383882
315 2616312387 2615840626 Bacteria 7921970
316 2616557480 2615840698 Bacteria 7319877
317 2644195349 2643221634 Bacteria 6705461
318 2644493985 2643221688 Bacteria 5260751
319 2671113145 2667528174 Bacteria 6435400
320 2721027474 2718218334 Bacteria 4765486
321 2739206375 2738543005 Bacteria 5278128
322 2806056454 2802429634 Bacteria 7083200
323 2806063539 2802429635 Bacteria 7650140
324 2808917178 2808606375 Bacteria 9466072
325 2819642096 2818991453 Bacteria 7181617
326 2842330910 2842324504 Bacteria 9364110
327 2842355249 2842348783 Bacteria 9002918
328 2857478853 2857472729 Bacteria 6568124
329 2889279671 2889276214 Bacteria 5979355
330 2919412913 2919408235 Bacteria 6149349
331 8008581860 8008574985 Bacteria 7815457
332 8024490545 8024486573 Bacteria 6540512
333 Ga0500557_001422
334 JGI24736J21556_1003782
335 JGI24740J21852_10000032
336 JGI24735J21928_10004551
337 JGI25162J39368_1000069
338 JGI25162J39368_1001569
339 JGI25154J39366_1005036
340 JGI25164J39214_1000224
341 JGI25165J46597_1000018
342 JGI25165J46597_1000258
343 rootH2_10023670
344 rootL2_10001447
345 JGI25160J50197_1000048
346 Ga0055525_1000431
347 Ga0055527_1000076
348 Ga0055527_1000418
349 Ga0055535_1000129
350 Ga0055535_1001033
351 Ga0055535_1001198
352 Ga0055542_1000173
353 Ga0055542_1000978
354 Ga0055542_1001026
355 Ga0055529_1000200
356 Ga0055529_1000820
357 Ga0055529_1000858
358 Ga0065165_1000821
359 Ga0065165_1003193
360 Ga0065707_10115309
361 Ga0070661_100348166
362 Ga0070668_100031787
363 Ga0070663_100071254
364 Ga0070706_100305397
365 Ga0068853_100178601
366 Ga0070665_100112315
367 Ga0068855_100402086
368 Ga0068854_100036980
369 Ga0068856_100000858
370 Ga0068856_100016251
371 Ga0068856_100134689
372 Ga0068856_100265982
373 Ga0068864_100714546
374 Ga0068851_10044869
375 Ga0068863_100090368
376 Ga0068858_100170235
377 Ga0068860_100127231
378 Ga0068862_100000163
379 Ga0070717_10049683
380 Ga0105240_10000405
381 Ga0105240_10000440
382 Ga0105240_10025357
383 Ga0105240_10273339
384 Ga0105240_10879281
385 Ga0105247_10082943
386 Ga0105243_10807535
387 Ga0105241_10179755
388 Ga0105241_10467459
389 Ga0105248_10139013
390 Ga0105237_10001847
391 Ga0105237_10002775
392 Ga0105238_10003232
393 Ga0105238_10052892
394 Ga0105238_10201427
395 Ga0105249_10000103
396 Ga0123341_1017407
397 Ga0123342_1032389
398 Ga0105239_10000070
399 Ga0105239_10001490
400 Ga0105239_10004396
401 Ga0157373_10413676
402 Ga0157370_10001822
403 Ga0157369_10095085
404 Ga0163162_10495932
405 Ga0163162_11331684
406 Ga0157372_10167660
407 Ga0163163_10450230
408 Ga0182008_10183629
409 Ga0157379_10475578
410 Ga0182006_1046825
411 Ga0182005_1008089
412 Ga0213872_10145128
413 Ga0209672_100017
414 Ga0209672_100103
415 Ga0209672_100255
416 Ga0209563_100238
417 Ga0207427_100045
418 Ga0209437_100022
419 Ga0209437_100140
420 Ga0209258_100038
421 Ga0209258_100148
422 Ga0209258_100232
423 Ga0209646_1002660
424 Ga0209026_1025018
425 Ga0209677_100189
426 Ga0209148_1000009
427 Ga0209148_1000138
428 Ga0209148_1000206
429 Ga0209759_1001290
430 Ga0209233_1000031
431 Ga0209233_1000116
432 Ga0209233_1000139
433 Ga0209455_1000032
434 Ga0209455_1000124
435 Ga0209455_1000179
436 Ga0209130_1019519
437 Ga0209256_1017737
438 Ga0207426_1000103
439 Ga0207710_10003100
440 Ga0207647_10009449
441 Ga0207647_10010068
442 Ga0207647_10070392
443 Ga0207684_10412673
444 Ga0207654_10160441
445 Ga0207695_10000609
446 Ga0207695_10001319
447 Ga0207695_10116073
448 Ga0207695_10773729
449 Ga0207671_10000132
450 Ga0207671_10000397
451 Ga0207671_10002482
452 Ga0207694_10090076
453 Ga0207694_10212217
454 Ga0207711_10051667
455 Ga0207711_10251234
456 Ga0207667_10758315
457 Ga0207712_10000069
458 Ga0207668_10060909
459 Ga0207640_10085423
460 Ga0207658_10141514
461 Ga0207639_10130119
462 Ga0207639_10256123
463 Ga0207702_10013290
464 Ga0207702_10021572
465 Ga0207702_10309040
466 Ga0207641_10131219
467 Ga0207698_10224111
468 Ga0268266_10047331
469 Ga0268266_10501193
470 Ga0268265_10000182
471 Ga0268264_10022164
472 Ga0307517_10022697
473 Ga0307515_10001108
474 Ga0307509_10004066
475 Ga0307508_10023120
476 Ga0307508_10070640
477 Ga0307414_10886338
478 Ga0307510_10038346
479 Ga0373953_0350797
480 Ga0395901_0109160
481 Ga0436361_0151952
482 Ga0436361_0822522
483 Ga0466965_0553406
484 Ga0466963_0063296
485 Ga0466958_0188144
486 Ga0466967_0107058
487 Ga0495617_000019
488 Ga0495592_0000625
489 Ga0495603_0122099
490 Ga0495629_0011432
491 Ga0495638_0037141
492 Ga0495638_0105388
493 Ga0495650_0000705
494 Ga0495580_0072417
495 Ga0495580_0541163
496 Ga0495605_0001214
497 Ga0495605_0240494
498 Ga0495662_0079322
499 Ga0495664_0254172
500 Ga0495584_0183800
501 Ga0495585_0070259
502 Ga0495607_0080223
503 Ga0495607_0273348
504 Ga0495583_0002813
505 Ga0495583_0010891
506 Ga0495583_0029317
507 Ga0495606_0000905
508 Ga0495620_0000525
509 Ga0495620_0005362
510 Ga0495628_0000305
511 Ga0495631_0002990
512 Ga0495632_0002612
513 Ga0495632_0004104
514 Ga0495632_0028468
515 Ga0495643_0008026
516 Ga0495648_0043085
517 Ga0495648_0176956
518 Ga0495642_0068997
519 Ga0495640_0119790
520 Ga0495609_0188787
521 Ga0495597_0056580
522 Ga0495622_0004997
523 Ga0495668_0005072
524 Ga0495625_0002122
525 Ga0495625_0147768
526 Ga0495625_0305815
527 Ga0495588_0140000
528 Ga0495646_0383613
529 Ga0495613_0361965
530 Ga0495670_0206005
531 Ga0495649_0000518
532 Ga0495600_0032078
533 Ga0495600_0331131
534 Ga0495660_0011498
535 Ga0495660_0043981
536 Ga0495604_0003124
537 Ga0495604_0009589
538 Ga0495674_0618519
539 Ga0495687_001114
540 Ga0495687_003312
541 Ga0495687_006869
542 Ga0495687_106642
543 Ga0495685_011054
544 Ga0495681_0104227
545 Ga0495686_0015386
546 Ga0496100_0000666
547 Ga0496102_0048177
548 Ga0496103_0010379
549 Ga0496105_0002435
550 Ga0496105_0240238
551 Ga0496105_0470028
552 Ga0496105_0841245
553 Ga0496106_0016606
554 Ga0496107_0134282
555 Ga0496112_0152575
556 Ga0496113_0050266
557 Ga0496113_0148289
558 Ga0496113_0168101
559 Ga0496115_0000191
560 Ga0496116_0012188
561 Ga0496117_0000445
562 Ga0496117_0002182
563 Ga0496117_0116227
564 Ga0496117_0132525
565 Ga0496117_0132528
566 Ga0496118_0003446
567 Ga0496118_0029046
568 Ga0496118_0143609
569 Ga0496119_0000048
570 Ga0496119_0000708
571 Ga0496119_0005725
572 Ga0496119_0016115
573 Ga0496119_0039807
574 Ga0496119_0042650
575 Ga0496120_0000133
576 Ga0496120_0006832
577 Ga0496120_0007939
578 Ga0496120_0025942
579 Ga0496120_0099184
580 Ga0496120_0240394
581 Ga0496121_0000101
582 Ga0496121_0001605
583 Ga0496121_0025667
584 Ga0496121_0028242
585 Ga0496122_0005052
586 Ga0496122_0055695
587 Ga0496122_0111103
588 Ga0496122_0138568
589 Ga0496123_0026956
590 Ga0496123_0037193
591 Ga0496123_0221221
592 Ga0496123_0351246
593 Ga0496124_0090125
594 Ga0496124_0178694
595 Ga0496124_0243532
596 Ga0496125_0114846
597 Ga0496125_0292011
598 Ga0496126_0000888
599 Ga0496126_0236653
600 Ga0501032_0076031
601 Ga0501034_0287775
602 Ga0501036_0022012
603 Ga0501037_0006008
604 Ga0501038_0047987
605 Ga0501043_0003130
606 Ga0501043_0454745
607 Ga0501046_0028148
608 Ga0501046_0282616
609 Ga0501047_0106773
610 Ga0501048_0038032
611 Ga0501035_0115587
612 Ga0501044_0054181
613 Ga0501044_0279160
614 Ga0495601_0167906
615 Ga0500610_0009973
616 Ga0500578_0041543
617 Ga0500643_001465
618 Ga0500643_002846
619 Ga0500643_067369
620 Ga0500644_0001038
621 Ga0500646_0203508
622 Ga0500651_0188498
623 Ga0500555_108173
624 Ga0500556_0126136
625 Ga0500569_003484
626 Ga0500594_0001650
627 Ga0500594_0001702
628 Ga0500608_002035
629 Ga0500608_087616
630 Ga0500564_083594
631 Ga0500568_0002118
632 Ga0500568_0022610
633 Ga0500588_0076198
634 Ga0500590_001359
635 Ga0500604_0004034
636 Ga0500616_0000345
637 Ga0500570_175422
638 Ga0500645_015932
639 Ga0500596_018161
640 Ga0466962_0183195
641 2513611591
642 2585283285
643 2585328775
644 2585336713
645 2585534694
646 2585556595
647 2616312387
648 2616557480
649 2644195349
650 2644493985
651 2671113145
652 2721027474
653 2739206375
654 2806056454
655 2806063539
656 2808917178
657 2819642096
658 2842330910
659 2842355249
660 2857478853
661 2889279671
662 2919412913
663 8008581860
664 8024490545

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

12

57

0.97

PF21597

TetR_C_43

Transcriptional regulator SbtR-like, C-terminal domain

74

175

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
5ovy-assembly1.cif.gz_A crystal structure of mab_4384 tetr 0.8436 5 183
5ovy-assembly1.cif.gz_A crystal structure of mab_4384 tetr 0.7887 5 183
2rek-assembly1.cif.gz_B-2 crystal structure of tetr-family transcriptional regulator 0.7841 2 178
2rek-assembly1.cif.gz_B-2 crystal structure of tetr-family transcriptional regulator 0.7683 2 178
2gfn-assembly1.cif.gz_A crystal structure of hth-type transcriptional regulator pksa related protein from rhodococcus sp. rha1 0.7666 1 180
ID Description Score Start End Superfamily
1t33B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9403 4 56 1.10.10.60
1jusE01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9125 8 53 1.10.10.60
3cdlB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9106 7 54 1.10.10.60
3b6cA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.892 10 64 1.10.10.60
1t33B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8787 4 56 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A4U5WQ98-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9647 1 179 GO:0000976
GO:0003700
AF-A0A0Q6FE89-F1-model_v4 TetR family transcriptional regulator 0.9588 1 179 GO:0000976
GO:0003700
AF-A0A1W2E055-F1-model_v4 Transcriptional regulator, TetR family 0.956 1 179 GO:0000976
GO:0003700
AF-A0A822P6Z7-F1-model_v4 deleted 0.9452 43 179
AF-A0A169PDN7-F1-model_v4 HTH tetR-type domain-containing protein 0.9368 1 180 GO:0000976
GO:0003700

Map