F400278

General Info

Members Datasets Scaffolds Average Seq Length
309 195 618 205

Family's Representative Sequence

Representative Sequence 3300031548|Ga0307408_100000611|Ga0307408_10000061113
Length 234
Sequence MSANDDNINNPENTSGPASKGSAPYTPPLGGSLGIVNYGAGNIFSLTAALERQGISYAMINSPEEFDGFERYIIPGVGHAGAAMQKLKESGMVEKIKATTKPVLGICVGMQLLTSHSEEGNADLLDIAPLKTCHFSENSKLKIPHMGWNRVSSELDNELFKGITNGSYFYYVHSYFIEFNPTFTIASTEYGIKYSAALKKDNFYGVQFHPEKSGEAGEQLLRNFASISYEESRS

Samples

Sample ID Description Type Environment
1 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
4 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
5 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
6 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
9 3300004798 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
10 3300004801 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
11 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
12 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
13 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
14 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
15 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
16 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
17 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
18 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
19 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
20 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
21 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
22 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
23 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
24 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
25 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
26 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
27 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
28 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
29 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
30 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
31 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
32 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
33 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
34 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
35 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
36 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
37 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
38 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
39 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
40 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
41 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
42 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
43 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
44 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
45 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
46 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
47 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
48 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
49 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
50 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
51 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
52 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
53 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
54 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
55 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
56 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
57 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
58 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
59 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
60 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
61 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
62 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
63 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
64 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
65 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
66 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
67 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
68 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
69 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
70 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
71 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
72 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
73 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
74 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
75 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
76 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
77 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
78 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
79 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
80 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
81 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
82 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
83 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
84 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
105 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
108 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
109 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
110 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
111 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
112 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
113 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
114 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
115 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
116 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
117 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
118 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
119 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
120 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
121 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
122 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
123 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
124 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
125 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
126 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
127 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
128 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
129 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
130 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
131 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
132 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
133 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
134 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
135 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
136 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
137 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
138 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
139 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
140 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
141 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
142 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
143 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
144 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
145 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
146 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
147 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
148 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
149 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
150 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
151 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
152 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
153 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
154 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
155 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
156 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
157 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
158 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
159 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
160 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
161 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
162 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
163 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
164 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
165 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
166 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
167 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
168 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
169 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
170 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
171 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
172 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
173 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
174 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
175 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
176 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
177 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
178 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
179 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
180 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
181 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
182 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
183 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
184 2574179768 Azoarcus communis DSM 12120 Isolate Unclassified
185 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
186 2842694124 Methylopila sp. R-72369 Isolate Unclassified
187 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
188 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
189 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
190 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
191 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
192 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
193 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
194 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
195 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.47
Metatranscriptomes 0.65
Isolates 3.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.91
Nodule 0
Rhizoplane 2.27
Rhizosphere 89.64
Stem 0
Stem Tuber 0
Unclassified 8.74

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307408_100000611 3300031548 Bacteria 30550
2 SwRhRL2b_contig_1305812 2162886007 Bacteria 904
3 SwRhRL2b_contig_2234035 2162886007 Bacteria 1587
4 JGI25162J39368_1000614 3300002737 Bacteria 25616
5 JGI25164J39214_1003561 3300002772 Bacteria 1947
6 JGI25406J46586_10070778 3300003203 Unclassified 1095
7 JGI25165J46597_1000985 3300003214 Bacteria 19074
8 rootH2_10254306 3300003320 Bacteria 1418
9 rootH2_10284514 3300003320 Bacteria 1344
10 rootH1_10008801 3300003323 Bacteria 13652
11 Ga0058859_11676811 3300004798 Bacteria 3662
12 Ga0058860_12245373 3300004801 Bacteria 2297
13 Ga0065704_10002415 3300005289 Bacteria 5278
14 Ga0065704_10005410 3300005289 Bacteria 3301
15 Ga0065707_10295330 3300005295 Bacteria 1016
16 Ga0070690_100047181 3300005330 Bacteria 2740
17 Ga0070690_100243710 3300005330 Bacteria 1268
18 Ga0070666_10038936 3300005335 Bacteria 3165
19 Ga0070680_100060055 3300005336 Bacteria 3111
20 Ga0070689_100098301 3300005340 Bacteria 2315
21 Ga0070661_100826594 3300005344 Bacteria 761
22 Ga0070671_101163149 3300005355 Bacteria 678
23 Ga0070674_100007142 3300005356 Bacteria 6571
24 Ga0070667_100044097 3300005367 Bacteria 3744
25 Ga0070703_10000293 3300005406 Bacteria 23071
26 Ga0070710_10352683 3300005437 Bacteria 974
27 Ga0070711_100000049 3300005439 Bacteria 73819
28 Ga0070705_100000681 3300005440 Bacteria 19482
29 Ga0070705_100033267 3300005440 Bacteria 2873
30 Ga0070705_100265747 3300005440 Bacteria 1212
31 Ga0070700_100044579 3300005441 Bacteria 2733
32 Ga0070700_100692580 3300005441 Unclassified 809
33 Ga0070694_100026741 3300005444 Bacteria 3742
34 Ga0070694_100205268 3300005444 Bacteria 1471
35 Ga0070708_100010091 3300005445 Bacteria 7643
36 Ga0070708_100421635 3300005445 Bacteria 1259
37 Ga0070708_100530254 3300005445 Bacteria 1111
38 Ga0070678_100049392 3300005456 Bacteria 3036
39 Ga0068867_100074235 3300005459 Bacteria 2549
40 Ga0070706_100005102 3300005467 Bacteria 12533
41 Ga0070706_100092496 3300005467 Bacteria 2806
42 Ga0070706_100991230 3300005467 Bacteria 775
43 Ga0070698_100294153 3300005471 Bacteria 1555
44 Ga0070699_100000013 3300005518 Bacteria 241303
45 Ga0070686_100022221 3300005544 Bacteria 3775
46 Ga0070686_100245122 3300005544 Bacteria 1306
47 Ga0070695_100046454 3300005545 Bacteria 2771
48 Ga0070695_100084994 3300005545 Bacteria 2100
49 Ga0070696_100000142 3300005546 Bacteria 39428
50 Ga0070696_100016326 3300005546 Bacteria 4997
51 Ga0070696_100785383 3300005546 Bacteria 783
52 Ga0070693_100014184 3300005547 Bacteria 4077
53 Ga0070704_100321814 3300005549 Unclassified 1296
54 Ga0068855_100211348 3300005563 Bacteria 2180
55 Ga0068852_100969601 3300005616 Bacteria 868
56 Ga0068859_100532265 3300005617 Bacteria 1270
57 Ga0068859_100897356 3300005617 Bacteria 971
58 Ga0068859_101492841 3300005617 Bacteria 746
59 Ga0068864_100015787 3300005618 Bacteria 6283
60 Ga0068866_10007877 3300005718 Bacteria 4472
61 Ga0068870_10247051 3300005840 Bacteria 1104
62 Ga0068863_100672891 3300005841 Bacteria 1027
63 Ga0068858_100026737 3300005842 Bacteria 5360
64 Ga0068858_100084414 3300005842 Bacteria 2954
65 Ga0068858_100146297 3300005842 Unclassified 2219
66 Ga0068858_100688786 3300005842 Bacteria 994
67 Ga0068858_101479880 3300005842 Unclassified 669
68 Ga0068860_100173481 3300005843 Bacteria 2083
69 Ga0081455_10002408 3300005937 Bacteria 22328
70 Ga0081455_10004283 3300005937 Bacteria 16063
71 Ga0081538_10002693 3300005981 Bacteria 17079
72 Ga0081538_10014920 3300005981 Bacteria 6051
73 Ga0081540_1108997 3300005983 Unclassified 1175
74 Ga0081539_10029701 3300005985 Bacteria 3408
75 Ga0081539_10038450 3300005985 Bacteria 2836
76 Ga0070716_100210153 3300006173 Unclassified 1300
77 Ga0075427_10019101 3300006194 Bacteria 1079
78 Ga0068871_100409155 3300006358 Bacteria 1209
79 Ga0068871_101390394 3300006358 Unclassified 661
80 Ga0075428_100031291 3300006844 Bacteria 5884
81 Ga0075428_100180077 3300006844 Bacteria 2288
82 Ga0075428_100241071 3300006844 Bacteria 1950
83 Ga0075428_100246751 3300006844 Bacteria 1925
84 Ga0075428_100520302 3300006844 Bacteria 1273
85 Ga0075428_101041930 3300006844 Bacteria 865
86 Ga0075430_100049310 3300006846 Bacteria 3553
87 Ga0075430_100549202 3300006846 Bacteria 953
88 Ga0075431_100015144 3300006847 Bacteria 7812
89 Ga0075431_100023281 3300006847 Bacteria 6337
90 Ga0075431_100048370 3300006847 Bacteria 4386
91 Ga0075431_100181529 3300006847 Bacteria 2159
92 Ga0075433_10089379 3300006852 Unclassified 2723
93 Ga0075433_10313244 3300006852 Bacteria 1389
94 Ga0075433_10595112 3300006852 Unclassified 971
95 Ga0075433_10800287 3300006852 Bacteria 824
96 Ga0075434_100269343 3300006871 Bacteria 1723
97 Ga0075434_100573680 3300006871 Unclassified 1147
98 Ga0075429_100046141 3300006880 Bacteria 3791
99 Ga0068865_100142402 3300006881 Bacteria 1809
100 Ga0068865_101225739 3300006881 Bacteria 665
101 Ga0075436_100000271 3300006914 Bacteria 32591
102 Ga0075436_100013070 3300006914 Bacteria 5691
103 Ga0097620_100532268 3300006931 Bacteria 1270
104 Ga0097620_100897482 3300006931 Bacteria 971
105 Ga0097620_101492507 3300006931 Bacteria 746
106 Ga0075435_100107627 3300007076 Bacteria 2316
107 Ga0105240_10316720 3300009093 Bacteria 1779
108 Ga0111539_10010384 3300009094 Bacteria 11721
109 Ga0111539_10013445 3300009094 Bacteria 10230
110 Ga0111539_10310465 3300009094 Bacteria 1835
111 Ga0111539_11526557 3300009094 Bacteria 775
112 Ga0105247_10010386 3300009101 Bacteria 5633
113 Ga0114129_10016039 3300009147 Bacteria 10654
114 Ga0114129_10515274 3300009147 Bacteria 1560
115 Ga0114129_10666984 3300009147 Bacteria 1340
116 Ga0114129_11667668 3300009147 Bacteria 779
117 Ga0105243_10000043 3300009148 Bacteria 158809
118 Ga0105248_10968081 3300009177 Bacteria 961
119 Ga0105248_11508653 3300009177 Bacteria 761
120 Ga0105249_10935631 3300009553 Bacteria 934
121 Ga0157371_10104045 3300013102 Bacteria 2015
122 Ga0157370_10140054 3300013104 Bacteria 2254
123 Ga0157370_10531111 3300013104 Bacteria 1079
124 Ga0157378_10060809 3300013297 Bacteria 3370
125 Ga0163162_10101493 3300013306 Bacteria 2969
126 Ga0163162_11511539 3300013306 Bacteria 765
127 Ga0157375_10823609 3300013308 Bacteria 1076
128 Ga0163163_10309471 3300014325 Bacteria 1632
129 Ga0163163_10349122 3300014325 Bacteria 1535
130 Ga0163163_10372389 3300014325 Bacteria 1485
131 Ga0163163_11046116 3300014325 Bacteria 880
132 Ga0157380_10281653 3300014326 Bacteria 1522
133 Ga0157379_10029733 3300014968 Bacteria 4858
134 Ga0157379_10335098 3300014968 Unclassified 1383
135 Ga0157379_11448123 3300014968 Unclassified 667
136 Ga0157376_11625755 3300014969 Unclassified 681
137 Ga0157376_11625759 3300014969 Bacteria 681
138 Ga0163161_10003149 3300017792 Bacteria 11639
139 Ga0163161_10004613 3300017792 Bacteria 9590
140 Ga0207427_100103 3300025231 Bacteria 119618
141 Ga0209437_100101 3300025233 Bacteria 226668
142 Ga0209233_1000124 3300025261 Bacteria 226743
143 Ga0207653_10000142 3300025885 Bacteria 51280
144 Ga0207692_10192393 3300025898 Bacteria 1195
145 Ga0207642_10047056 3300025899 Bacteria 1926
146 Ga0207710_10087234 3300025900 Bacteria 1455
147 Ga0207688_10064872 3300025901 Bacteria 2063
148 Ga0207680_10028103 3300025903 Bacteria 3142
149 Ga0207684_10000075 3300025910 Bacteria 183366
150 Ga0207684_10065112 3300025910 Bacteria 3095
151 Ga0207695_10473182 3300025913 Bacteria 1135
152 Ga0207663_10000035 3300025916 Bacteria 88027
153 Ga0207646_10001953 3300025922 Bacteria 24739
154 Ga0207709_10000021 3300025935 Bacteria 386722
155 Ga0207665_10025441 3300025939 Bacteria 3906
156 Ga0207711_10668103 3300025941 Bacteria 969
157 Ga0207667_10303726 3300025949 Bacteria 1630
158 Ga0207677_10781086 3300026023 Bacteria 854
159 Ga0207703_10073762 3300026035 Bacteria 2824
160 Ga0207703_10155701 3300026035 Unclassified 1996
161 Ga0207708_10047527 3300026075 Bacteria 3266
162 Ga0207708_10622319 3300026075 Unclassified 916
163 Ga0207648_10094698 3300026089 Bacteria 2612
164 Ga0207676_10225008 3300026095 Bacteria 1673
165 Ga0207676_11004453 3300026095 Bacteria 822
166 Ga0207674_10607004 3300026116 Bacteria 1057
167 Ga0207428_10010118 3300027907 Bacteria 8437
168 Ga0207428_10021207 3300027907 Bacteria 5503
169 Ga0207428_10186362 3300027907 Bacteria 1566
170 Ga0207428_10192197 3300027907 Bacteria 1538
171 Ga0268265_10953993 3300028380 Bacteria 845
172 Ga0268264_10206236 3300028381 Bacteria 1801
173 Ga0265338_10023774 3300028800 Bacteria 6285
174 Ga0265338_10033381 3300028800 Bacteria 4996
175 Ga0265338_10192991 3300028800 Bacteria 1542
176 Ga0265338_10205217 3300028800 Bacteria 1483
177 Ga0265338_10411482 3300028800 Bacteria 963
178 Ga0316176_1050137 3300030732 Bacteria 14004
179 Ga0316183_1065995 3300030742 Bacteria 27909
180 Ga0316181_1148726 3300030744 Bacteria 7875
181 Ga0316182_1138965 3300030745 Bacteria 1408
182 Ga0265330_10027481 3300031235 Bacteria 2570
183 Ga0265340_10039056 3300031247 Bacteria 2346
184 Ga0265327_10128901 3300031251 Bacteria 1192
185 Ga0307408_100000660 3300031548 Bacteria 28737
186 Ga0307408_100001373 3300031548 Bacteria 18154
187 Ga0316575_10003078 3300031665 Bacteria 5693
188 Ga0316579_10190833 3300031691 Bacteria 990
189 Ga0265314_10048486 3300031711 Bacteria 2981
190 Ga0316576_10134075 3300031727 Bacteria 1864
191 Ga0316578_10006914 3300031728 Bacteria 5642
192 Ga0307405_10040444 3300031731 Bacteria 2824
193 Ga0307410_10301384 3300031852 Bacteria 1265
194 Ga0307412_10447911 3300031911 Bacteria 1063
195 Ga0307409_100365834 3300031995 Bacteria 1366
196 Ga0307409_101301385 3300031995 Bacteria 752
197 Ga0307414_10024691 3300032004 Bacteria 3837
198 Ga0307414_10084135 3300032004 Bacteria 2339
199 Ga0307414_10116738 3300032004 Bacteria 2044
200 Ga0307414_10135208 3300032004 Bacteria 1921
201 Ga0307414_10270730 3300032004 Bacteria 1422
202 Ga0307414_10404221 3300032004 Bacteria 1187
203 Ga0307414_10822900 3300032004 Bacteria 848
204 Ga0307411_10315225 3300032005 Bacteria 1260
205 Ga0307411_10361165 3300032005 Bacteria 1188
206 Ga0316574_0174975 3300035398 Bacteria 1382
207 Ga0373937_0257085 3300036401 Bacteria 1647
208 Ga0316581_0003333 3300037588 Bacteria 3987
209 Ga0439457_040627 3300042014 Unclassified 1037
210 Ga0451577_0004610 3300042876 Bacteria 14477
211 Ga0451577_0061809 3300042876 Bacteria 3340
212 Ga0466972_0003815 3300044658 Bacteria 7496
213 Ga0453683_0065490 3300044673 Bacteria 2272
214 Ga0453683_0172591 3300044673 Unclassified 1370
215 Ga0453684_0003998 3300044712 Bacteria 32179
216 Ga0453684_0034984 3300044712 Bacteria 6955
217 Ga0451576_1651916 3300045051 Unclassified 664
218 Ga0495616_0045190 3300046513 Bacteria 2231
219 Ga0495625_0300884 3300046660 Bacteria 1026
220 Ga0496101_0179443 3300048904 Bacteria 1630
221 Ga0496105_0001618 3300048908 Bacteria 15993
222 Ga0496109_0000181 3300048912 Bacteria 62664
223 Ga0496109_0685868 3300048912 Bacteria 962
224 Ga0496110_0023349 3300048913 Bacteria 5258
225 Ga0496111_0070828 3300048914 Bacteria 2537
226 Ga0496112_0205145 3300048915 Bacteria 1929
227 Ga0496116_0001728 3300048919 Bacteria 23852
228 Ga0496117_0003269 3300048920 Bacteria 19047
229 Ga0496118_0069412 3300048921 Bacteria 2552
230 Ga0496122_0006115 3300048925 Bacteria 14014
231 Ga0496123_0003787 3300048926 Bacteria 16562
232 Ga0496125_0036412 3300048928 Bacteria 4298
233 Ga0496126_0113548 3300048929 Bacteria 2358
234 Ga0501037_0242177 3300049573 Bacteria 1264
235 Ga0501039_0468967 3300049575 Bacteria 989
236 Ga0501040_0014454 3300049576 Bacteria 5201
237 Ga0501040_0565809 3300049576 Bacteria 821
238 Ga0501040_0707451 3300049576 Unclassified 729
239 Ga0501041_0041688 3300049577 Bacteria 2789
240 Ga0501041_0275418 3300049577 Bacteria 1059
241 Ga0501042_0221450 3300049578 Bacteria 1365
242 Ga0501042_0322858 3300049578 Bacteria 1115
243 Ga0501043_0345724 3300049579 Bacteria 1131
244 Ga0501046_0158791 3300049580 Bacteria 1702
245 Ga0501046_0500059 3300049580 Bacteria 871
246 Ga0501048_0165491 3300049582 Bacteria 1566
247 Ga0501068_0053365 3300049584 Unclassified 2447
248 Ga0501070_0172399 3300049586 Bacteria 1782
249 Ga0501071_0298216 3300049587 Unclassified 1222
250 Ga0501072_0754771 3300049588 Bacteria 763
251 Ga0501075_0007378 3300049591 Bacteria 7628
252 Ga0501076_0008292 3300049592 Bacteria 7613
253 Ga0501243_024714 3300049675 Unclassified 1004
254 Ga0501079_0066620 3300049741 Unclassified 2779
255 Ga0501079_0578281 3300049741 Bacteria 884
256 Ga0501080_0199137 3300049742 Bacteria 1839
257 Ga0501081_0015176 3300049743 Bacteria 5082
258 Ga0501081_0181771 3300049743 Unclassified 1521
259 Ga0501044_0793883 3300049823 Bacteria 826
260 Ga0501045_0004008 3300049824 Bacteria 10140
261 Ga0501045_0632724 3300049824 Unclassified 791
262 nmdc:mga05p37_17216_c1 3300050507 Bacteria 8718
263 nmdc:mga05p37_23820_c1 3300050507 Bacteria 7434
264 nmdc:mga05p37_52416_c1 3300050507 Bacteria 5017
265 nmdc:mga05p37_675910_c1 3300050507 Bacteria 1152
266 nmdc:mga09592_31867_c1 3300050508 Bacteria 4394
267 nmdc:mga09592_76529_c1 3300050508 Bacteria 2846
268 nmdc:mga0qj67_11559_c1 3300050509 Bacteria 6619
269 nmdc:mga0qj67_199462_c1 3300050509 Unclassified 1232
270 nmdc:mga0qj67_373759_c1 3300050509 Bacteria 1151
271 nmdc:mga06r32_132779_c1 3300050510 Bacteria 2463
272 nmdc:mga06r32_13938_c1 3300050510 Bacteria 7293
273 nmdc:mga06r32_152507_c2 3300050510 Bacteria 1016
274 nmdc:mga06r32_237391_c1 3300050510 Bacteria 1811
275 nmdc:mga06r32_28845_c1 3300050510 Bacteria 5195
276 nmdc:mga06r32_619869_c1 3300050510 Bacteria 1052
277 nmdc:mga06r32_63828_c1 3300050510 Bacteria 3551
278 nmdc:mga08y16_1326_c1 3300050511 Bacteria 24646
279 nmdc:mga08y16_1444562_c1 3300050511 Bacteria 650
280 nmdc:mga08y16_1608_c1 3300050511 Bacteria 22848
281 nmdc:mga08y16_22715_c1 3300050511 Bacteria 5370
282 nmdc:mga0n895_1000116_c1 3300050512 Bacteria 817
283 nmdc:mga0n895_100057_c1 3300050512 Bacteria 2908
284 nmdc:mga08x19_19_c1 3300050514 Bacteria 315774
285 nmdc:mga08x19_3380_c1 3300050514 Bacteria 9516
286 nmdc:mga0a205_189674_c1 3300050515 Bacteria 1948
287 nmdc:mga0a205_38401_c1 3300050515 Bacteria 4606
288 nmdc:mga0a205_42529_c1 3300050515 Bacteria 4378
289 Ga0500646_0020837 3300053090 Bacteria 1743
290 Ga0500556_0277195 3300053104 Bacteria 658
291 Ga0500611_000022 3300053727 Bacteria 102349
292 Ga0501084_0012626 3300054114 Bacteria 6998
293 Ga0501084_0100176 3300054114 Bacteria 2433
294 Ga0501082_0016440 3300060353 Bacteria 6368
295 Ga0501082_0292582 3300060353 Bacteria 1418
296 Ga0530510_0071464 3300061734 Bacteria 2519
297 Ga0530510_0364826 3300061734 Bacteria 1086
298 2574430164 2574179768 Bacteria 4907129
299 2722726343 2721755487 Bacteria 6357185
300 2842695980 2842694124 Bacteria 4063419
301 2842908874 2842903701 Bacteria 6986368
302 2890739567 2890737413 Bacteria 4269751
303 2896319311 2896317667 Bacteria 4606601
304 2896346135 2896344016 Bacteria 3811746
305 2898716260 2898713307 Bacteria 4110805
306 2904783771 2904780799 Bacteria 5840761
307 2919181979 2919177583 Bacteria 5641607
308 3003237225 3003233435 Bacteria 4458031
309 8055589909 8055588893 Bacteria 3619545
310 Ga0307408_100000611
311 SwRhRL2b_contig_1305812
312 SwRhRL2b_contig_2234035
313 JGI25162J39368_1000614
314 JGI25164J39214_1003561
315 JGI25406J46586_10070778
316 JGI25165J46597_1000985
317 rootH2_10254306
318 rootH2_10284514
319 rootH1_10008801
320 Ga0058859_11676811
321 Ga0058860_12245373
322 Ga0065704_10002415
323 Ga0065704_10005410
324 Ga0065707_10295330
325 Ga0070690_100047181
326 Ga0070690_100243710
327 Ga0070666_10038936
328 Ga0070680_100060055
329 Ga0070689_100098301
330 Ga0070661_100826594
331 Ga0070671_101163149
332 Ga0070674_100007142
333 Ga0070667_100044097
334 Ga0070703_10000293
335 Ga0070710_10352683
336 Ga0070711_100000049
337 Ga0070705_100000681
338 Ga0070705_100033267
339 Ga0070705_100265747
340 Ga0070700_100044579
341 Ga0070700_100692580
342 Ga0070694_100026741
343 Ga0070694_100205268
344 Ga0070708_100010091
345 Ga0070708_100421635
346 Ga0070708_100530254
347 Ga0070678_100049392
348 Ga0068867_100074235
349 Ga0070706_100005102
350 Ga0070706_100092496
351 Ga0070706_100991230
352 Ga0070698_100294153
353 Ga0070699_100000013
354 Ga0070686_100022221
355 Ga0070686_100245122
356 Ga0070695_100046454
357 Ga0070695_100084994
358 Ga0070696_100000142
359 Ga0070696_100016326
360 Ga0070696_100785383
361 Ga0070693_100014184
362 Ga0070704_100321814
363 Ga0068855_100211348
364 Ga0068852_100969601
365 Ga0068859_100532265
366 Ga0068859_100897356
367 Ga0068859_101492841
368 Ga0068864_100015787
369 Ga0068866_10007877
370 Ga0068870_10247051
371 Ga0068863_100672891
372 Ga0068858_100026737
373 Ga0068858_100084414
374 Ga0068858_100146297
375 Ga0068858_100688786
376 Ga0068858_101479880
377 Ga0068860_100173481
378 Ga0081455_10002408
379 Ga0081455_10004283
380 Ga0081538_10002693
381 Ga0081538_10014920
382 Ga0081540_1108997
383 Ga0081539_10029701
384 Ga0081539_10038450
385 Ga0070716_100210153
386 Ga0075427_10019101
387 Ga0068871_100409155
388 Ga0068871_101390394
389 Ga0075428_100031291
390 Ga0075428_100180077
391 Ga0075428_100241071
392 Ga0075428_100246751
393 Ga0075428_100520302
394 Ga0075428_101041930
395 Ga0075430_100049310
396 Ga0075430_100549202
397 Ga0075431_100015144
398 Ga0075431_100023281
399 Ga0075431_100048370
400 Ga0075431_100181529
401 Ga0075433_10089379
402 Ga0075433_10313244
403 Ga0075433_10595112
404 Ga0075433_10800287
405 Ga0075434_100269343
406 Ga0075434_100573680
407 Ga0075429_100046141
408 Ga0068865_100142402
409 Ga0068865_101225739
410 Ga0075436_100000271
411 Ga0075436_100013070
412 Ga0097620_100532268
413 Ga0097620_100897482
414 Ga0097620_101492507
415 Ga0075435_100107627
416 Ga0105240_10316720
417 Ga0111539_10010384
418 Ga0111539_10013445
419 Ga0111539_10310465
420 Ga0111539_11526557
421 Ga0105247_10010386
422 Ga0114129_10016039
423 Ga0114129_10515274
424 Ga0114129_10666984
425 Ga0114129_11667668
426 Ga0105243_10000043
427 Ga0105248_10968081
428 Ga0105248_11508653
429 Ga0105249_10935631
430 Ga0157371_10104045
431 Ga0157370_10140054
432 Ga0157370_10531111
433 Ga0157378_10060809
434 Ga0163162_10101493
435 Ga0163162_11511539
436 Ga0157375_10823609
437 Ga0163163_10309471
438 Ga0163163_10349122
439 Ga0163163_10372389
440 Ga0163163_11046116
441 Ga0157380_10281653
442 Ga0157379_10029733
443 Ga0157379_10335098
444 Ga0157379_11448123
445 Ga0157376_11625755
446 Ga0157376_11625759
447 Ga0163161_10003149
448 Ga0163161_10004613
449 Ga0207427_100103
450 Ga0209437_100101
451 Ga0209233_1000124
452 Ga0207653_10000142
453 Ga0207692_10192393
454 Ga0207642_10047056
455 Ga0207710_10087234
456 Ga0207688_10064872
457 Ga0207680_10028103
458 Ga0207684_10000075
459 Ga0207684_10065112
460 Ga0207695_10473182
461 Ga0207663_10000035
462 Ga0207646_10001953
463 Ga0207709_10000021
464 Ga0207665_10025441
465 Ga0207711_10668103
466 Ga0207667_10303726
467 Ga0207677_10781086
468 Ga0207703_10073762
469 Ga0207703_10155701
470 Ga0207708_10047527
471 Ga0207708_10622319
472 Ga0207648_10094698
473 Ga0207676_10225008
474 Ga0207676_11004453
475 Ga0207674_10607004
476 Ga0207428_10010118
477 Ga0207428_10021207
478 Ga0207428_10186362
479 Ga0207428_10192197
480 Ga0268265_10953993
481 Ga0268264_10206236
482 Ga0265338_10023774
483 Ga0265338_10033381
484 Ga0265338_10192991
485 Ga0265338_10205217
486 Ga0265338_10411482
487 Ga0316176_1050137
488 Ga0316183_1065995
489 Ga0316181_1148726
490 Ga0316182_1138965
491 Ga0265330_10027481
492 Ga0265340_10039056
493 Ga0265327_10128901
494 Ga0307408_100000660
495 Ga0307408_100001373
496 Ga0316575_10003078
497 Ga0316579_10190833
498 Ga0265314_10048486
499 Ga0316576_10134075
500 Ga0316578_10006914
501 Ga0307405_10040444
502 Ga0307410_10301384
503 Ga0307412_10447911
504 Ga0307409_100365834
505 Ga0307409_101301385
506 Ga0307414_10024691
507 Ga0307414_10084135
508 Ga0307414_10116738
509 Ga0307414_10135208
510 Ga0307414_10270730
511 Ga0307414_10404221
512 Ga0307414_10822900
513 Ga0307411_10315225
514 Ga0307411_10361165
515 Ga0316574_0174975
516 Ga0373937_0257085
517 Ga0316581_0003333
518 Ga0439457_040627
519 Ga0451577_0004610
520 Ga0451577_0061809
521 Ga0466972_0003815
522 Ga0453683_0065490
523 Ga0453683_0172591
524 Ga0453684_0003998
525 Ga0453684_0034984
526 Ga0451576_1651916
527 Ga0495616_0045190
528 Ga0495625_0300884
529 Ga0496101_0179443
530 Ga0496105_0001618
531 Ga0496109_0000181
532 Ga0496109_0685868
533 Ga0496110_0023349
534 Ga0496111_0070828
535 Ga0496112_0205145
536 Ga0496116_0001728
537 Ga0496117_0003269
538 Ga0496118_0069412
539 Ga0496122_0006115
540 Ga0496123_0003787
541 Ga0496125_0036412
542 Ga0496126_0113548
543 Ga0501037_0242177
544 Ga0501039_0468967
545 Ga0501040_0014454
546 Ga0501040_0565809
547 Ga0501040_0707451
548 Ga0501041_0041688
549 Ga0501041_0275418
550 Ga0501042_0221450
551 Ga0501042_0322858
552 Ga0501043_0345724
553 Ga0501046_0158791
554 Ga0501046_0500059
555 Ga0501048_0165491
556 Ga0501068_0053365
557 Ga0501070_0172399
558 Ga0501071_0298216
559 Ga0501072_0754771
560 Ga0501075_0007378
561 Ga0501076_0008292
562 Ga0501243_024714
563 Ga0501079_0066620
564 Ga0501079_0578281
565 Ga0501080_0199137
566 Ga0501081_0015176
567 Ga0501081_0181771
568 Ga0501044_0793883
569 Ga0501045_0004008
570 Ga0501045_0632724
571 nmdc:mga05p37_17216_c1
572 nmdc:mga05p37_23820_c1
573 nmdc:mga05p37_52416_c1
574 nmdc:mga05p37_675910_c1
575 nmdc:mga09592_31867_c1
576 nmdc:mga09592_76529_c1
577 nmdc:mga0qj67_11559_c1
578 nmdc:mga0qj67_199462_c1
579 nmdc:mga0qj67_373759_c1
580 nmdc:mga06r32_132779_c1
581 nmdc:mga06r32_13938_c1
582 nmdc:mga06r32_152507_c2
583 nmdc:mga06r32_237391_c1
584 nmdc:mga06r32_28845_c1
585 nmdc:mga06r32_619869_c1
586 nmdc:mga06r32_63828_c1
587 nmdc:mga08y16_1326_c1
588 nmdc:mga08y16_1444562_c1
589 nmdc:mga08y16_1608_c1
590 nmdc:mga08y16_22715_c1
591 nmdc:mga0n895_1000116_c1
592 nmdc:mga0n895_100057_c1
593 nmdc:mga08x19_19_c1
594 nmdc:mga08x19_3380_c1
595 nmdc:mga0a205_189674_c1
596 nmdc:mga0a205_38401_c1
597 nmdc:mga0a205_42529_c1
598 Ga0500646_0020837
599 Ga0500556_0277195
600 Ga0500611_000022
601 Ga0501084_0012626
602 Ga0501084_0100176
603 Ga0501082_0016440
604 Ga0501082_0292582
605 Ga0530510_0071464
606 Ga0530510_0364826
607 2574430164
608 2722726343
609 2842695980
610 2842908874
611 2890739567
612 2896319311
613 2896346135
614 2898716260
615 2904783771
616 2919181979
617 3003237225
618 8055589909

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00117

GATase

Glutamine amidotransferase class-I

35

227

0.76

PF07722

Peptidase_C26

Peptidase C26

83

211

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
4gud-assembly1.cif.gz_A crystal structure of amidotransferase hish from vibrio cholerae 0.8633 1 188
4gud-assembly2.cif.gz_B crystal structure of amidotransferase hish from vibrio cholerae 0.8612 2 186
4gud-assembly1.cif.gz_A crystal structure of amidotransferase hish from vibrio cholerae 0.8589 1 188
4gud-assembly2.cif.gz_B crystal structure of amidotransferase hish from vibrio cholerae 0.8435 2 186
7ac8-assembly3.cif.gz_F error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.8229 1 187
ID Description Score Start End Superfamily
af_Q9SZ30_59_284_3.40.50.880 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.8472 2 186 3.40.50.880
4gudA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.8443 1 188 3.40.50.880
af_Q2FUU1_1_190_3.40.50.880 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.843 3 188 3.40.50.880
4gudA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.84 1 188 3.40.50.880
af_Q2FUU1_1_190_3.40.50.880 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.8301 3 188 3.40.50.880
ID Description Score Start End GO Terms
AF-A0A7Y6XRS3-F1-model_v4 Imidazole glycerol phosphate synthase subunit HisH (EC 2.4.2.-) 0.9977 1 99 GO:0000105
GO:0000107
GO:0004359
GO:0006541
GO:0042823
AF-A0A7Y2XVY2-F1-model_v4 deleted 0.9971 1 84
AF-A0A2W6TPL9-F1-model_v4 Imidazole glycerol phosphate synthase subunit HisH 0.9947 3 101 GO:0000105
GO:0000107
GO:0004359
GO:0006541
GO:0016829
AF-A0A7Y6XRS3-F1-model_v4 Imidazole glycerol phosphate synthase subunit HisH (EC 2.4.2.-) 0.9878 1 99 GO:0000105
GO:0000107
GO:0004359
GO:0006541
GO:0042823
AF-A0A522QWZ0-F1-model_v4 Imidazole glycerol phosphate synthase subunit HisH 0.9839 1 106 GO:0000105
GO:0000107
GO:0004359
GO:0006541
GO:0042823

Map