F400237

General Info

Members Datasets Scaffolds Average Seq Length
309 217 618 281

Family's Representative Sequence

Representative Sequence 3300025298|Ga0209050_1000005|Ga0209050_1000005820
Length 310
Sequence MEENENNRKESVDACRRPRLSLPAMGTATASREYAGARVAEIRRRANHIRRQALAMAHRAKQGHPGGDMSCADILATLYFAVMRFDPAEPQAPARDRFVMSKGHCTGAFYSALAGAGYFPEADLETYLQPGSRLNGHPNRNYLPGVETNTGPLGHGLPVAVGMAVAAQIDGGDYRVFALTGDGELQEGSMWEAAMFAGHRKLGNLTVIIDRNRLQQGAPTEDTNSLEPLGDKWIAFGWDVAEIDGHDADALYAALSAPRSADGKPLCIIAHTIKGRGVSFMENQAGWHHGTPSDAQLAQAYAELDAELQA

Samples

Sample ID Description Type Environment
1 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
2 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
3 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
6 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
7 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
8 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
9 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
10 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
11 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
12 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
13 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
14 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
15 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
16 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
17 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
18 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
19 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
20 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
21 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
22 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
23 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
24 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
25 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
26 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
27 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
28 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
29 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
30 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
31 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
32 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
33 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
34 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
35 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
36 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
37 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
38 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
39 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
40 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
41 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
42 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
43 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
44 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
45 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
46 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
48 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
49 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
50 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
51 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
52 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
53 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
54 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
55 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
56 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
57 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
58 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
59 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
60 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
61 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
62 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
63 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
64 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
65 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
66 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
67 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
68 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
70 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
73 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
77 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
78 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
109 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
111 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
112 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
113 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
114 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
115 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
116 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
117 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
118 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
119 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
120 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
121 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
122 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
123 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
124 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
125 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
126 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
127 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
128 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
129 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
130 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
131 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
132 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
133 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
134 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
135 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
136 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
137 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
138 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
139 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
140 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
141 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
142 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
143 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
144 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
145 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
146 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
147 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
148 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
149 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
150 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
151 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
152 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
153 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
154 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
155 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
156 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
157 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
158 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
159 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
160 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
161 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
162 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
163 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
164 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
165 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
166 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
167 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
168 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
169 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
170 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
171 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
172 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
173 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
174 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
175 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
176 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
177 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
178 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
179 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
180 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
181 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
182 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
183 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
184 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
185 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
186 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
187 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
188 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
189 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
190 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
191 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
192 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
193 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
194 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
195 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
196 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
197 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
198 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
199 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
200 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
201 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
202 2523231067 Pleomorphomonas oryzae DSM 16300 Isolate Unclassified
203 2643221552 Caulobacter sp. Root1472 Isolate Unclassified
204 2643221558 Rhizobium sp. Root149 Isolate Unclassified
205 2643221584 Caulobacter sp. Root656 Isolate Unclassified
206 2643221591 Devosia sp. Root685 Isolate Unclassified
207 2643221629 Devosia sp. Root105 Isolate Unclassified
208 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
209 2643221662 Devosia sp. Root413D1 Isolate Unclassified
210 2643221719 Rhizobium sp. Root274 Isolate Unclassified
211 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
212 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
213 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
214 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
215 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
216 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
217 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 94.82
Metatranscriptomes 0
Isolates 5.18

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.89
Nodule 1.62
Rhizoplane 3.56
Rhizosphere 70.55
Stem 0
Stem Tuber 0
Unclassified 10.36

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0209050_1000005 3300025298 Bacteria 1557793
2 JGI25150J39212_1000224 3300002774 Bacteria 30911
3 JGI25153J46596_10000198 3300003215 Bacteria 56709
4 rootH2_10255055 3300003320 Plasmid 3449
5 Ga0055529_1000014 3300003763 Bacteria 367283
6 Ga0055536_1001195 3300003781 Bacteria 16130
7 Ga0055536_1013981 3300003781 Bacteria 2851
8 Ga0055530_10005048 3300003791 Bacteria 6485
9 Ga0055540_1005060 3300003792 Bacteria 5704
10 Ga0055531_10000231 3300003794 Bacteria 61615
11 Ga0065712_10067920 3300005290 Bacteria 20841
12 Ga0070658_10003493 3300005327 Bacteria 12910
13 Ga0070658_10008572 3300005327 Bacteria 8219
14 Ga0070676_10031984 3300005328 Bacteria 3011
15 Ga0070683_100000578 3300005329 Bacteria 26129
16 Ga0070683_100036609 3300005329 Bacteria 4491
17 Ga0070683_100080517 3300005329 Unclassified 3049
18 Ga0070670_100002478 3300005331 Bacteria 15225
19 Ga0070666_10009600 3300005335 Bacteria 6040
20 Ga0068868_100371184 3300005338 Unclassified 1229
21 Ga0070660_100004826 3300005339 Bacteria 9325
22 Ga0070660_100133763 3300005339 Unclassified 1986
23 Ga0070660_100186466 3300005339 Bacteria 1680
24 Ga0070661_100003181 3300005344 Bacteria 11311
25 Ga0070661_100037271 3300005344 Bacteria 3537
26 Ga0070661_100283775 3300005344 Unclassified 1285
27 Ga0070668_100067742 3300005347 Unclassified 2774
28 Ga0070675_100086982 3300005354 Bacteria 2613
29 Ga0070675_100227509 3300005354 Bacteria 1626
30 Ga0070671_100222702 3300005355 Unclassified 1600
31 Ga0070671_100236714 3300005355 Bacteria 1550
32 Ga0070674_100010293 3300005356 Bacteria 5647
33 Ga0070673_100100556 3300005364 Unclassified 2380
34 Ga0070659_100000388 3300005366 Bacteria 33379
35 Ga0070659_100010630 3300005366 Bacteria 6778
36 Ga0070667_100031269 3300005367 Bacteria 4439
37 Ga0070714_100286633 3300005435 Bacteria 1531
38 Ga0070711_100295144 3300005439 Bacteria 1287
39 Ga0070662_100018256 3300005457 Bacteria 4743
40 Ga0070662_100176599 3300005457 Bacteria 1681
41 Ga0068867_100148717 3300005459 Bacteria 1838
42 Ga0070684_100002122 3300005535 Bacteria 14623
43 Ga0070684_100039884 3300005535 Bacteria 4041
44 Ga0068853_100000262 3300005539 Bacteria 37061
45 Ga0068853_100041067 3300005539 Bacteria 3950
46 Ga0068853_100073983 3300005539 Bacteria 2972
47 Ga0070672_100052393 3300005543 Unclassified 3186
48 Ga0070686_100134929 3300005544 Bacteria 1711
49 Ga0070665_100008631 3300005548 Bacteria 10312
50 Ga0070665_100078873 3300005548 Bacteria 3299
51 Ga0070665_100118154 3300005548 Bacteria 2654
52 Ga0070665_100186776 3300005548 Unclassified 2073
53 Ga0068855_100138261 3300005563 Unclassified 2778
54 Ga0068855_100264708 3300005563 Bacteria 1914
55 Ga0068855_100404166 3300005563 Bacteria 1496
56 Ga0068855_100555588 3300005563 Unclassified 1242
57 Ga0068855_100657933 3300005563 Bacteria 1124
58 Ga0070664_100006345 3300005564 Bacteria 9539
59 Ga0068857_100017666 3300005577 Bacteria 6254
60 Ga0068854_100000003 3300005578 Bacteria 330045
61 Ga0068856_100060756 3300005614 Bacteria 3733
62 Ga0068856_100062720 3300005614 Bacteria 3671
63 Ga0068856_100081839 3300005614 Bacteria 3204
64 Ga0068856_100232376 3300005614 Unclassified 1859
65 Ga0068852_100007942 3300005616 Bacteria 7776
66 Ga0068852_100087238 3300005616 Bacteria 2784
67 Ga0068851_10178091 3300005834 Bacteria 1176
68 Ga0068858_100144830 3300005842 Unclassified 2231
69 Ga0068858_100246570 3300005842 Bacteria 1696
70 Ga0068860_100278113 3300005843 Unclassified 1635
71 Ga0070717_10000962 3300006028 Bacteria 19214
72 Ga0075364_10000076 3300006051 Bacteria 38765
73 Ga0097621_100002026 3300006237 Bacteria 13858
74 Ga0075370_10043265 3300006353 Bacteria 2545
75 Ga0068871_100004891 3300006358 Bacteria 9357
76 Ga0079104_1000123 3300006946 Bacteria 111052
77 Ga0105240_10001310 3300009093 Bacteria 42943
78 Ga0105240_10014554 3300009093 Bacteria 10735
79 Ga0105240_10373334 3300009093 Unclassified 1612
80 Ga0105240_10539648 3300009093 Bacteria 1292
81 Ga0105245_10111642 3300009098 Bacteria 2542
82 Ga0105247_10279796 3300009101 Bacteria 1150
83 Ga0105248_10019633 3300009177 Bacteria 7480
84 Ga0105248_10583303 3300009177 Bacteria 1261
85 Ga0105237_10060821 3300009545 Bacteria 3777
86 Ga0105237_10785439 3300009545 Bacteria 959
87 Ga0105238_10015882 3300009551 Bacteria 7618
88 Ga0105238_10025131 3300009551 Bacteria 6070
89 Ga0105238_10153694 3300009551 Bacteria 2276
90 Ga0105238_10309553 3300009551 Bacteria 1564
91 Ga0105239_10007813 3300010375 Bacteria 12234
92 Ga0105239_10075401 3300010375 Bacteria 3708
93 Ga0105239_10080140 3300010375 Bacteria 3593
94 Ga0105239_10588040 3300010375 Unclassified 1269
95 Ga0157370_10001428 3300013104 Bacteria 29651
96 Ga0157370_10001644 3300013104 Bacteria 27600
97 Ga0157370_10036536 3300013104 Bacteria 4766
98 Ga0157370_10083569 3300013104 Bacteria 3002
99 Ga0157369_10003708 3300013105 Bacteria 18159
100 Ga0157369_10007068 3300013105 Bacteria 12944
101 Ga0157369_10019525 3300013105 Bacteria 7584
102 Ga0157369_10063419 3300013105 Unclassified 3981
103 Ga0157369_10174251 3300013105 Bacteria 2265
104 Ga0157369_10250633 3300013105 Bacteria 1848
105 Ga0157374_10005908 3300013296 Bacteria 10339
106 Ga0157374_10144088 3300013296 Bacteria 2314
107 Ga0157378_10018233 3300013297 Bacteria 6161
108 Ga0157378_10076279 3300013297 Bacteria 3020
109 Ga0157378_10207178 3300013297 Bacteria 1858
110 Ga0163162_10010674 3300013306 Bacteria 8933
111 Ga0157372_10043309 3300013307 Bacteria 4983
112 Ga0157372_10185823 3300013307 Bacteria 2407
113 Ga0157372_10424651 3300013307 Unclassified 1549
114 Ga0157375_10027931 3300013308 Bacteria 5280
115 Ga0182008_10078384 3300014497 Unclassified 1625
116 Ga0157379_10037391 3300014968 Bacteria 4328
117 Ga0157379_10052487 3300014968 Bacteria 3642
118 Ga0157376_10002855 3300014969 Bacteria 11829
119 Ga0163161_10084167 3300017792 Bacteria 2345
120 Ga0209563_100030 3300025230 Bacteria 489259
121 Ga0207425_1000016 3300025245 Bacteria 428169
122 Ga0209677_106439 3300025253 Bacteria 2777
123 Ga0209148_1000011 3300025254 Bacteria 1196503
124 Ga0209129_1000596 3300025258 Bacteria 24634
125 Ga0209565_1019389 3300025263 Bacteria 1454
126 Ga0209455_1000006 3300025272 Bacteria 1196503
127 Ga0209676_1000136 3300025292 Bacteria 181860
128 Ga0209676_1020102 3300025292 Bacteria 2277
129 Ga0209025_1000396 3300025294 Bacteria 89775
130 Ga0209758_1000009 3300025297 Bacteria 1123483
131 Ga0209050_1000238 3300025298 Bacteria 119729
132 Ga0209051_1000100 3300025303 Bacteria 165053
133 Ga0209257_1000142 3300025304 Bacteria 200756
134 Ga0209257_1000896 3300025304 Bacteria 41831
135 Ga0209257_1001045 3300025304 Bacteria 36833
136 Ga0207697_10024903 3300025315 Bacteria 2448
137 Ga0207656_10061426 3300025321 Bacteria 1649
138 Ga0207680_10062600 3300025903 Bacteria 2274
139 Ga0207680_10109873 3300025903 Unclassified 1786
140 Ga0207647_10005142 3300025904 Bacteria 9628
141 Ga0207645_10024824 3300025907 Bacteria 3883
142 Ga0207695_10008429 3300025913 Bacteria 12907
143 Ga0207695_10061135 3300025913 Bacteria 3895
144 Ga0207695_10351762 3300025913 Bacteria 1360
145 Ga0207671_10113996 3300025914 Bacteria 2060
146 Ga0207657_10003374 3300025919 Bacteria 17074
147 Ga0207657_10065630 3300025919 Bacteria 3094
148 Ga0207657_10134597 3300025919 Bacteria 2023
149 Ga0207649_10011467 3300025920 Bacteria 4888
150 Ga0207649_10032282 3300025920 Bacteria 3120
151 Ga0207694_10076673 3300025924 Bacteria 2618
152 Ga0207694_10208783 3300025924 Bacteria 1590
153 Ga0207650_10457770 3300025925 Bacteria 1062
154 Ga0207687_10329552 3300025927 Unclassified 1238
155 Ga0207664_10129113 3300025929 Bacteria 2126
156 Ga0207664_10434666 3300025929 Bacteria 1170
157 Ga0207690_10000354 3300025932 Bacteria 30499
158 Ga0207690_10021714 3300025932 Bacteria 3984
159 Ga0207706_10284125 3300025933 Bacteria 1443
160 Ga0207691_10136434 3300025940 Unclassified 2164
161 Ga0207711_10107619 3300025941 Unclassified 2476
162 Ga0207661_10002788 3300025944 Bacteria 12046
163 Ga0207661_10069222 3300025944 Bacteria 2877
164 Ga0207661_10122717 3300025944 Unclassified 2214
165 Ga0207667_10008420 3300025949 Bacteria 12258
166 Ga0207667_10055079 3300025949 Bacteria 4182
167 Ga0207667_10233404 3300025949 Bacteria 1883
168 Ga0207667_10456144 3300025949 Unclassified 1299
169 Ga0207668_10022283 3300025972 Bacteria 4053
170 Ga0207640_10000002 3300025981 Bacteria 524211
171 Ga0207658_10147908 3300025986 Bacteria 1910
172 Ga0207677_10508255 3300026023 Unclassified 1043
173 Ga0207639_10000011 3300026041 Bacteria 381897
174 Ga0207639_10335557 3300026041 Bacteria 1346
175 Ga0207702_10039852 3300026078 Bacteria 3938
176 Ga0207648_10471262 3300026089 Unclassified 1146
177 Ga0207648_10536678 3300026089 Bacteria 1073
178 Ga0207674_10000449 3300026116 Bacteria 53656
179 Ga0207698_10008937 3300026142 Bacteria 6356
180 Ga0207698_10321006 3300026142 Bacteria 1450
181 Ga0209281_1000251 3300027111 Bacteria 106988
182 Ga0268266_10003090 3300028379 Bacteria 16999
183 Ga0268266_10034842 3300028379 Unclassified 4282
184 Ga0268266_10067973 3300028379 Bacteria 3085
185 Ga0268266_10115226 3300028379 Bacteria 2386
186 Ga0268266_10134478 3300028379 Unclassified 2214
187 Ga0307517_10018539 3300028786 Bacteria 8995
188 Ga0307515_10000901 3300028794 Bacteria 68376
189 Ga0265330_10018089 3300031235 Bacteria 3239
190 Ga0265325_10009980 3300031241 Bacteria 5521
191 Ga0265339_10015608 3300031249 Bacteria 4548
192 Ga0265316_10071202 3300031344 Bacteria 2681
193 Ga0307513_10021749 3300031456 Bacteria 7566
194 Ga0265313_10003242 3300031595 Bacteria 13370
195 Ga0307516_10055106 3300031730 Bacteria 3883
196 Ga0307406_10144675 3300031901 Bacteria 1688
197 Ga0307414_10216356 3300032004 Bacteria 1570
198 Ga0307510_10048074 3300033180 Bacteria 4558
199 Ga0307510_10090549 3300033180 Bacteria 2905
200 Ga0307510_10149680 3300033180 Bacteria 1957
201 Ga0373939_0010813 3300035114 Bacteria 2293
202 Ga0373954_0098633 3300035118 Unclassified 1408
203 Ga0373933_0114309 3300035724 Unclassified 1686
204 Ga0373937_0004609 3300036401 Bacteria 11702
205 Ga0395898_0122403 3300037466 Bacteria 2493
206 Ga0395905_0000396 3300037471 Bacteria 61743
207 Ga0395905_0051925 3300037471 Bacteria 3840
208 Ga0395901_0882784 3300038443 Bacteria 877
209 Ga0400484_27386 3300038725 Bacteria 18345
210 Ga0400488_10372 3300038741 Bacteria 5693
211 Ga0436361_0365792 3300039447 Unclassified 2306
212 Ga0439465_0013842 3300041413 Bacteria 2511
213 Ga0439445_0004835 3300042004 Bacteria 3058
214 Ga0439432_025548 3300042006 Bacteria 1937
215 Ga0439446_0008779 3300042156 Bacteria 2693
216 Ga0453683_0051587 3300044673 Bacteria 2576
217 Ga0466966_0076817 3300044684 Bacteria 2085
218 Ga0466970_0021938 3300044765 Bacteria 3332
219 Ga0466967_0018716 3300045976 Bacteria 5546
220 Ga0495638_0014671 3300046460 Bacteria 5286
221 Ga0495638_0160248 3300046460 Bacteria 1298
222 Ga0495650_0000192 3300046471 Bacteria 131943
223 Ga0495596_0006608 3300046500 Bacteria 5321
224 Ga0495583_0000248 3300046506 Bacteria 89173
225 Ga0495583_0000785 3300046506 Bacteria 39590
226 Ga0495606_0035498 3300046507 Bacteria 3407
227 Ga0495637_0180736 3300046520 Bacteria 782
228 Ga0495643_0000434 3300046522 Bacteria 54356
229 Ga0495652_0190418 3300046529 Bacteria 1566
230 Ga0495597_0010411 3300046542 Bacteria 4549
231 Ga0495622_0102412 3300046557 Bacteria 1312
232 Ga0495633_0087676 3300046558 Bacteria 1447
233 Ga0495667_0202079 3300046559 Bacteria 1272
234 Ga0495668_0027165 3300046616 Bacteria 3243
235 Ga0495625_0208093 3300046660 Bacteria 1287
236 Ga0495661_0006197 3300046665 Bacteria 8420
237 Ga0495613_0088148 3300046689 Bacteria 2249
238 Ga0495670_0005860 3300046691 Bacteria 6024
239 Ga0495649_0006834 3300046694 Bacteria 7062
240 Ga0495600_0168497 3300046809 Bacteria 1414
241 Ga0495660_0002990 3300046810 Bacteria 10549
242 Ga0495683_0036858 3300047323 Bacteria 2481
243 Ga0495687_032984 3300047443 Bacteria 2356
244 Ga0495686_0004994 3300047472 Bacteria 10666
245 Ga0495602_0145954 3300048088 Bacteria 1867
246 Ga0496100_0299169 3300048903 Bacteria 1204
247 Ga0496104_0002162 3300048907 Bacteria 17061
248 Ga0496104_0247636 3300048907 Bacteria 1695
249 Ga0496105_0012878 3300048908 Bacteria 6629
250 Ga0496108_0003903 3300048911 Bacteria 11974
251 Ga0496109_0000513 3300048912 Bacteria 32952
252 Ga0496110_0000061 3300048913 Bacteria 53551
253 Ga0496110_0235914 3300048913 Bacteria 1664
254 Ga0496111_0023143 3300048914 Bacteria 4359
255 Ga0496112_0001372 3300048915 Bacteria 18562
256 Ga0496113_0065652 3300048916 Bacteria 2747
257 Ga0496117_0202265 3300048920 Bacteria 1121
258 Ga0496121_0005746 3300048924 Bacteria 15753
259 Ga0496121_0429224 3300048924 Bacteria 858
260 Ga0496125_0000441 3300048928 Bacteria 75923
261 Ga0496126_0231643 3300048929 Bacteria 1547
262 Ga0496126_0374257 3300048929 Bacteria 1161
263 Ga0495682_0011432 3300049460 Bacteria 3415
264 Ga0501031_0176683 3300049568 Bacteria 1395
265 Ga0501033_0257043 3300049570 Bacteria 1237
266 Ga0501034_0068345 3300049571 Bacteria 3563
267 Ga0501034_0068929 3300049571 Bacteria 3548
268 Ga0501034_0071231 3300049571 Bacteria 3486
269 Ga0501034_0137236 3300049571 Bacteria 2426
270 Ga0501047_0017060 3300049581 Bacteria 6944
271 Ga0501068_0233827 3300049584 Bacteria 1169
272 Ga0501074_0120904 3300049590 Bacteria 1873
273 Ga0501083_0007910 3300049744 Bacteria 7529
274 nmdc:mga03683_26380_c1 3300050489 Bacteria 2291
275 nmdc:mga00v17_230784_c1 3300050491 Bacteria 1199
276 nmdc:mga00v17_63_c1 3300050491 Bacteria 66457
277 nmdc:mga0k408_75480_c1 3300050493 Bacteria 1970
278 nmdc:mga07m45_35964_c1 3300050496 Bacteria 2756
279 Ga0495601_0111892 3300053077 Bacteria 1769
280 Ga0500643_013471 3300053087 Bacteria 2885
281 Ga0500555_000127 3300053103 Bacteria 36304
282 Ga0500555_024573 3300053103 Bacteria 1726
283 Ga0500595_000214 3300053119 Bacteria 39457
284 Ga0500595_065421 3300053119 Bacteria 1088
285 Ga0500608_000060 3300053122 Bacteria 48113
286 Ga0500614_020404 3300053123 Bacteria 1529
287 Ga0500618_002397 3300053125 Bacteria 7131
288 Ga0500658_0000119 3300053134 Bacteria 37530
289 Ga0500559_0013704 3300053136 Bacteria 3430
290 Ga0500568_0008037 3300053139 Bacteria 5120
291 Ga0500616_0014659 3300053153 Bacteria 4498
292 Ga0500634_0000001 3300053161 Bacteria 258285
293 Ga0500636_0002352 3300053177 Bacteria 10495
294 2523466728 2523231067 Bacteria 5230452
295 2643779665 2643221552 Bacteria 5708754
296 2643813911 2643221558 Bacteria 5460675
297 2643931736 2643221584 Bacteria 5511711
298 2643962846 2643221591 Bacteria 4397626
299 2644168321 2643221629 Bacteria 5850260
300 2644297569 2643221653 Bacteria 4569637
301 2644351156 2643221662 Bacteria 5851492
302 2644655822 2643221719 Bacteria 4568197
303 2739351080 2738543031 Bacteria 5769731
304 2819683650 2818991461 Bacteria 7026071
305 2821127091 2821123053 Bacteria 7836056
306 2838740765 2838736955 Bacteria 5760694
307 2841844606 2841840854 Bacteria 5761912
308 2842144325 2842140634 Bacteria 5759631
309 2857534922 2857531043 Bacteria 6754041
310 Ga0209050_1000005
311 JGI25150J39212_1000224
312 JGI25153J46596_10000198
313 rootH2_10255055
314 Ga0055529_1000014
315 Ga0055536_1001195
316 Ga0055536_1013981
317 Ga0055530_10005048
318 Ga0055540_1005060
319 Ga0055531_10000231
320 Ga0065712_10067920
321 Ga0070658_10003493
322 Ga0070658_10008572
323 Ga0070676_10031984
324 Ga0070683_100000578
325 Ga0070683_100036609
326 Ga0070683_100080517
327 Ga0070670_100002478
328 Ga0070666_10009600
329 Ga0068868_100371184
330 Ga0070660_100004826
331 Ga0070660_100133763
332 Ga0070660_100186466
333 Ga0070661_100003181
334 Ga0070661_100037271
335 Ga0070661_100283775
336 Ga0070668_100067742
337 Ga0070675_100086982
338 Ga0070675_100227509
339 Ga0070671_100222702
340 Ga0070671_100236714
341 Ga0070674_100010293
342 Ga0070673_100100556
343 Ga0070659_100000388
344 Ga0070659_100010630
345 Ga0070667_100031269
346 Ga0070714_100286633
347 Ga0070711_100295144
348 Ga0070662_100018256
349 Ga0070662_100176599
350 Ga0068867_100148717
351 Ga0070684_100002122
352 Ga0070684_100039884
353 Ga0068853_100000262
354 Ga0068853_100041067
355 Ga0068853_100073983
356 Ga0070672_100052393
357 Ga0070686_100134929
358 Ga0070665_100008631
359 Ga0070665_100078873
360 Ga0070665_100118154
361 Ga0070665_100186776
362 Ga0068855_100138261
363 Ga0068855_100264708
364 Ga0068855_100404166
365 Ga0068855_100555588
366 Ga0068855_100657933
367 Ga0070664_100006345
368 Ga0068857_100017666
369 Ga0068854_100000003
370 Ga0068856_100060756
371 Ga0068856_100062720
372 Ga0068856_100081839
373 Ga0068856_100232376
374 Ga0068852_100007942
375 Ga0068852_100087238
376 Ga0068851_10178091
377 Ga0068858_100144830
378 Ga0068858_100246570
379 Ga0068860_100278113
380 Ga0070717_10000962
381 Ga0075364_10000076
382 Ga0097621_100002026
383 Ga0075370_10043265
384 Ga0068871_100004891
385 Ga0079104_1000123
386 Ga0105240_10001310
387 Ga0105240_10014554
388 Ga0105240_10373334
389 Ga0105240_10539648
390 Ga0105245_10111642
391 Ga0105247_10279796
392 Ga0105248_10019633
393 Ga0105248_10583303
394 Ga0105237_10060821
395 Ga0105237_10785439
396 Ga0105238_10015882
397 Ga0105238_10025131
398 Ga0105238_10153694
399 Ga0105238_10309553
400 Ga0105239_10007813
401 Ga0105239_10075401
402 Ga0105239_10080140
403 Ga0105239_10588040
404 Ga0157370_10001428
405 Ga0157370_10001644
406 Ga0157370_10036536
407 Ga0157370_10083569
408 Ga0157369_10003708
409 Ga0157369_10007068
410 Ga0157369_10019525
411 Ga0157369_10063419
412 Ga0157369_10174251
413 Ga0157369_10250633
414 Ga0157374_10005908
415 Ga0157374_10144088
416 Ga0157378_10018233
417 Ga0157378_10076279
418 Ga0157378_10207178
419 Ga0163162_10010674
420 Ga0157372_10043309
421 Ga0157372_10185823
422 Ga0157372_10424651
423 Ga0157375_10027931
424 Ga0182008_10078384
425 Ga0157379_10037391
426 Ga0157379_10052487
427 Ga0157376_10002855
428 Ga0163161_10084167
429 Ga0209563_100030
430 Ga0207425_1000016
431 Ga0209677_106439
432 Ga0209148_1000011
433 Ga0209129_1000596
434 Ga0209565_1019389
435 Ga0209455_1000006
436 Ga0209676_1000136
437 Ga0209676_1020102
438 Ga0209025_1000396
439 Ga0209758_1000009
440 Ga0209050_1000238
441 Ga0209051_1000100
442 Ga0209257_1000142
443 Ga0209257_1000896
444 Ga0209257_1001045
445 Ga0207697_10024903
446 Ga0207656_10061426
447 Ga0207680_10062600
448 Ga0207680_10109873
449 Ga0207647_10005142
450 Ga0207645_10024824
451 Ga0207695_10008429
452 Ga0207695_10061135
453 Ga0207695_10351762
454 Ga0207671_10113996
455 Ga0207657_10003374
456 Ga0207657_10065630
457 Ga0207657_10134597
458 Ga0207649_10011467
459 Ga0207649_10032282
460 Ga0207694_10076673
461 Ga0207694_10208783
462 Ga0207650_10457770
463 Ga0207687_10329552
464 Ga0207664_10129113
465 Ga0207664_10434666
466 Ga0207690_10000354
467 Ga0207690_10021714
468 Ga0207706_10284125
469 Ga0207691_10136434
470 Ga0207711_10107619
471 Ga0207661_10002788
472 Ga0207661_10069222
473 Ga0207661_10122717
474 Ga0207667_10008420
475 Ga0207667_10055079
476 Ga0207667_10233404
477 Ga0207667_10456144
478 Ga0207668_10022283
479 Ga0207640_10000002
480 Ga0207658_10147908
481 Ga0207677_10508255
482 Ga0207639_10000011
483 Ga0207639_10335557
484 Ga0207702_10039852
485 Ga0207648_10471262
486 Ga0207648_10536678
487 Ga0207674_10000449
488 Ga0207698_10008937
489 Ga0207698_10321006
490 Ga0209281_1000251
491 Ga0268266_10003090
492 Ga0268266_10034842
493 Ga0268266_10067973
494 Ga0268266_10115226
495 Ga0268266_10134478
496 Ga0307517_10018539
497 Ga0307515_10000901
498 Ga0265330_10018089
499 Ga0265325_10009980
500 Ga0265339_10015608
501 Ga0265316_10071202
502 Ga0307513_10021749
503 Ga0265313_10003242
504 Ga0307516_10055106
505 Ga0307406_10144675
506 Ga0307414_10216356
507 Ga0307510_10048074
508 Ga0307510_10090549
509 Ga0307510_10149680
510 Ga0373939_0010813
511 Ga0373954_0098633
512 Ga0373933_0114309
513 Ga0373937_0004609
514 Ga0395898_0122403
515 Ga0395905_0000396
516 Ga0395905_0051925
517 Ga0395901_0882784
518 Ga0400484_27386
519 Ga0400488_10372
520 Ga0436361_0365792
521 Ga0439465_0013842
522 Ga0439445_0004835
523 Ga0439432_025548
524 Ga0439446_0008779
525 Ga0453683_0051587
526 Ga0466966_0076817
527 Ga0466970_0021938
528 Ga0466967_0018716
529 Ga0495638_0014671
530 Ga0495638_0160248
531 Ga0495650_0000192
532 Ga0495596_0006608
533 Ga0495583_0000248
534 Ga0495583_0000785
535 Ga0495606_0035498
536 Ga0495637_0180736
537 Ga0495643_0000434
538 Ga0495652_0190418
539 Ga0495597_0010411
540 Ga0495622_0102412
541 Ga0495633_0087676
542 Ga0495667_0202079
543 Ga0495668_0027165
544 Ga0495625_0208093
545 Ga0495661_0006197
546 Ga0495613_0088148
547 Ga0495670_0005860
548 Ga0495649_0006834
549 Ga0495600_0168497
550 Ga0495660_0002990
551 Ga0495683_0036858
552 Ga0495687_032984
553 Ga0495686_0004994
554 Ga0495602_0145954
555 Ga0496100_0299169
556 Ga0496104_0002162
557 Ga0496104_0247636
558 Ga0496105_0012878
559 Ga0496108_0003903
560 Ga0496109_0000513
561 Ga0496110_0000061
562 Ga0496110_0235914
563 Ga0496111_0023143
564 Ga0496112_0001372
565 Ga0496113_0065652
566 Ga0496117_0202265
567 Ga0496121_0005746
568 Ga0496121_0429224
569 Ga0496125_0000441
570 Ga0496126_0231643
571 Ga0496126_0374257
572 Ga0495682_0011432
573 Ga0501031_0176683
574 Ga0501033_0257043
575 Ga0501034_0068345
576 Ga0501034_0068929
577 Ga0501034_0071231
578 Ga0501034_0137236
579 Ga0501047_0017060
580 Ga0501068_0233827
581 Ga0501074_0120904
582 Ga0501083_0007910
583 nmdc:mga03683_26380_c1
584 nmdc:mga00v17_230784_c1
585 nmdc:mga00v17_63_c1
586 nmdc:mga0k408_75480_c1
587 nmdc:mga07m45_35964_c1
588 Ga0495601_0111892
589 Ga0500643_013471
590 Ga0500555_000127
591 Ga0500555_024573
592 Ga0500595_000214
593 Ga0500595_065421
594 Ga0500608_000060
595 Ga0500614_020404
596 Ga0500618_002397
597 Ga0500658_0000119
598 Ga0500559_0013704
599 Ga0500568_0008037
600 Ga0500616_0014659
601 Ga0500634_0000001
602 Ga0500636_0002352
603 2523466728
604 2643779665
605 2643813911
606 2643931736
607 2643962846
608 2644168321
609 2644297569
610 2644351156
611 2644655822
612 2739351080
613 2819683650
614 2821127091
615 2838740765
616 2841844606
617 2842144325
618 2857534922

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00456

Transketolase_N

Transketolase, thiamine diphosphate binding domain

42

307

0.92

PF00676

E1_dh

Dehydrogenase E1 component

126

268

0.91

PF13292

DXP_synthase_N

1-deoxy-D-xylulose-5-phosphate synthase

121

219

0.84

PF02775

TPP_enzyme_C

Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

131

223

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
6yak-assembly1.cif.gz_CCC split gene transketolase, active alpha2beta2 heterotetramer 0.972 2 252
6yak-assembly1.cif.gz_CCC split gene transketolase, active alpha2beta2 heterotetramer 0.9534 2 252
6rjb-assembly1.cif.gz_A human transketolase variant t382e 0.9448 2 252
4kxw-assembly1.cif.gz_A human transketolase in covalent complex with donor ketose d-xylulose-5-phosphate, crystal 2 0.9443 2 252
3ooy-assembly1.cif.gz_A crystal structure of human transketolase (tkt) 0.944 2 255
ID Description Score Start End Superfamily
af_Q58094_1_274_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9537 2 250 3.40.50.970
af_Q6PHI8_1_298_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9354 2 253 3.40.50.970
af_C6KSV3_9_337_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9305 2 250 3.40.50.970
af_Q58094_1_274_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9281 2 250 3.40.50.970
4c7vA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9265 2 250 3.40.50.970
ID Description Score Start End GO Terms
AF-A0A1E4F5F6-F1-model_v4 Transketolase 0.9842 2 249
AF-A0A2D8W5N3-F1-model_v4 deleted 0.9837 2 249
AF-A0A2S9QJX0-F1-model_v4 Transketolase 0.983 2 250
AF-A0A3N2R6X8-F1-model_v4 Transketolase 0.9825 2 250
AF-A0A212LF17-F1-model_v4 Putative transketolase N-terminal section (EC 2.2.1.1) 0.9824 2 250 GO:0004802

Map