F400102

General Info

Members Datasets Scaffolds Average Seq Length
309 176 616 216

Family's Representative Sequence

Representative Sequence 3300005535|Ga0070684_100063080|Ga0070684_1000630803
Length 210
Sequence VSIFTRTKTTLPTSEEALPGRATSEFVIAPRHRVLDAPIVTPTAPDGYEVAVFGLGCFWGAEEIFWRLPGVWSTSVGYAGGVTPNPTYEEVCSGRTGHTEAVRVVYDPEQVSYADLVKAFFEVHDPTQGMRQGNDVGTQYRSAIYYTTPGQEKTARELTEVYGAELRRRRIGEITTEIRSAEETPYQYLAKNPFGYRCHANTGIRFPETA

Samples

Sample ID Description Type Environment
1 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
2 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
5 3300003162 Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_21 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
6 3300003163 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
7 3300003300 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_1 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
8 3300003308 Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_20 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
9 3300003544 Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_33 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
10 3300003568 Avena fatua rhizosphere microbial communities - H4_Bulk_Litter_24 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
11 3300003574 Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_26 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
12 3300003575 Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_25 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
13 3300003577 Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_32 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
14 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
15 3300003579 Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_45 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
16 3300003611 Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_27 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
17 3300003613 Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_31 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
18 3300003693 Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
19 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
20 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
21 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
22 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
23 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
24 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
25 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
26 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
27 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
28 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
29 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
30 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
31 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
32 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
33 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
34 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
35 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
36 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
41 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
42 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
43 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
44 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
45 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
46 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
47 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
48 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
49 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
60 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
61 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
62 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
63 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
64 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
65 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
66 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
67 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
68 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
69 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
74 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
75 3300038996 Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot19 Metagenome Rhizosphere
76 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
77 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
78 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
79 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
80 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
81 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
82 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
83 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
84 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
85 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
86 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
87 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
88 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
89 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
90 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
91 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
92 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
93 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
94 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
95 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
96 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
97 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
98 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
99 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
100 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
101 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
102 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
103 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
104 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
105 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
106 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
107 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
108 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
109 3300049128 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
110 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
111 3300049527 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
112 3300049529 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
113 3300049531 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
114 3300049532 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
115 3300049537 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B12_A_3_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
116 3300049541 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_A_4_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
117 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
122 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
131 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
132 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
133 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
134 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
135 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
136 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
137 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
138 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
139 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
140 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
141 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
142 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
143 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
144 3300049768 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_B_4_drought Metagenome Rhizosphere
145 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
147 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
148 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
149 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
150 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
151 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
152 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
153 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
154 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
155 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
156 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
157 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
158 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
159 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
160 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
161 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
162 2643221561 Nocardioides sp. Root151 Isolate Unclassified
163 2643221617 Nocardioides sp. Root79 Isolate Unclassified
164 2643221620 Nocardioides sp. Root240 Isolate Unclassified
165 2643221696 Nocardioides sp. Root140 Isolate Unclassified
166 2675903058 Actinopolymorpha cephalotaxi CPCC 202808 Isolate Rhizosphere
167 2738541305 Nocardioides sp. CF167 Isolate Unclassified
168 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
169 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
170 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
171 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
172 2827628540 Actinopolymorpha cephalotaxi DSM 45117 Isolate Rhizosphere
173 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
174 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
175 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
176 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root

Type Distribution

Type Percentage (%)
Metagenomes 76.38
Metatranscriptomes 18.77
Isolates 4.85

Biome Distribution

Category Percentage (%)
Aerial Root 0.65
Bulb 0
Endosphere 9.39
Nodule 0
Rhizoplane 2.91
Rhizosphere 81.55
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070684_100063080 3300005535 Bacteria 3247
2 LJQas_1012817 3300000549 Bacteria 989
3 JGI24739J22299_10046047 3300001989 Bacteria 1429
4 JGI24735J21928_10017388 3300002067 Bacteria 2225
5 Ga0006778J45830_1005015 3300003162 Bacteria 1452
6 Ga0006778J45830_1010977 3300003162 Bacteria 1598
7 Ga0006778J45830_1013285 3300003162 Bacteria 955
8 Ga0006778J45830_1034223 3300003162 Bacteria 987
9 Ga0006759J45824_1006251 3300003163 Bacteria 1065
10 Ga0006758J48902_1011176 3300003300 Bacteria 1090
11 Ga0006777J48905_1007167 3300003308 Bacteria 1158
12 Ga0006777J48905_1025918 3300003308 Bacteria 1092
13 Ga0007417J51691_1007055 3300003544 Bacteria 1287
14 Ga0007417J51691_1027988 3300003544 Bacteria 876
15 Ga0007417J51691_1049041 3300003544 Bacteria 718
16 Ga0006781J51513_1008102 3300003568 Bacteria 1089
17 Ga0006781J51513_1010069 3300003568 Bacteria 745
18 Ga0007410J51695_1006815 3300003574 Bacteria 1109
19 Ga0007410J51695_1013757 3300003574 Bacteria 866
20 Ga0007410J51695_1016967 3300003574 Bacteria 989
21 Ga0007409J51694_1013940 3300003575 Bacteria 1226
22 Ga0007409J51694_1015193 3300003575 Bacteria 1195
23 Ga0007409J51694_1019917 3300003575 Bacteria 749
24 Ga0007409J51694_1030011 3300003575 Bacteria 738
25 Ga0007416J51690_1009752 3300003577 Bacteria 1361
26 Ga0007416J51690_1027543 3300003577 Bacteria 840
27 Ga0007416J51690_1034170 3300003577 Bacteria 811
28 Ga0006562J51391_1012673 3300003578 Bacteria 1336
29 Ga0007429J51699_1003930 3300003579 Bacteria 1543
30 Ga0007429J51699_1010641 3300003579 Bacteria 1070
31 Ga0007429J51699_1016478 3300003579 Bacteria 865
32 Ga0007429J51699_1031394 3300003579 Bacteria 904
33 Ga0007411J51799_104370 3300003611 Bacteria 1072
34 Ga0007411J51799_108493 3300003611 Bacteria 710
35 Ga0007415J51800_105804 3300003613 Bacteria 733
36 Ga0007415J51800_121784 3300003613 Bacteria 894
37 Ga0032354_1004972 3300003693 Bacteria 724
38 Ga0032354_1010535 3300003693 Bacteria 1185
39 Ga0032354_1019328 3300003693 Bacteria 1297
40 Ga0032354_1039926 3300003693 Bacteria 1144
41 Ga0058862_10025776 3300004803 Bacteria 1002
42 Ga0070683_100645008 3300005329 Bacteria 1014
43 Ga0070682_100168522 3300005337 Bacteria 1520
44 Ga0070660_100040161 3300005339 Bacteria 3559
45 Ga0070674_100514734 3300005356 Bacteria 999
46 Ga0070714_100061000 3300005435 Bacteria 3238
47 Ga0070662_100191424 3300005457 Bacteria 1618
48 Ga0070684_100116371 3300005535 Bacteria 2401
49 Ga0070664_100107597 3300005564 Bacteria 2431
50 Ga0081539_10116763 3300005985 Bacteria 1332
51 Ga0075365_10012183 3300006038 Bacteria 5095
52 Ga0075365_10018101 3300006038 Bacteria 4325
53 Ga0075365_10060940 3300006038 Bacteria 2518
54 Ga0075365_10179670 3300006038 Bacteria 1479
55 Ga0075368_10014065 3300006042 Bacteria 2949
56 Ga0075363_100045798 3300006048 Bacteria 2320
57 Ga0075363_100203509 3300006048 Bacteria 1132
58 Ga0075362_10014714 3300006177 Bacteria 3165
59 Ga0075367_10029501 3300006178 Bacteria 3138
60 Ga0075367_10174664 3300006178 Bacteria 1339
61 Ga0075370_10006134 3300006353 Bacteria 6028
62 Ga0105245_10694179 3300009098 Bacteria 1050
63 Ga0105243_10517379 3300009148 Bacteria 1134
64 Ga0105243_11014146 3300009148 Bacteria 833
65 Ga0105242_10440781 3300009176 Bacteria 1225
66 Ga0105237_10337569 3300009545 Bacteria 1511
67 Ga0105239_10111166 3300010375 Bacteria 3037
68 Ga0105239_10372358 3300010375 Bacteria 1614
69 Ga0157370_10543743 3300013104 Bacteria 1065
70 Ga0157372_11299117 3300013307 Bacteria 840
71 Ga0182008_10188117 3300014497 Bacteria 1047
72 Ga0197907_10520663 3300020069 Bacteria 770
73 Ga0197907_11387191 3300020069 Bacteria 1042
74 Ga0206355_1225258 3300020076 Bacteria 933
75 Ga0206351_10153271 3300020077 Bacteria 846
76 Ga0206354_10707360 3300020081 Bacteria 1034
77 Ga0206354_11471158 3300020081 Bacteria 2352
78 Ga0206353_10957713 3300020082 Bacteria 3281
79 Ga0154015_1631810 3300020610 Bacteria 722
80 Ga0213875_10038780 3300021388 Bacteria 2245
81 Ga0207647_10113724 3300025904 Bacteria 1599
82 Ga0207647_10166125 3300025904 Bacteria 1286
83 Ga0207671_10327385 3300025914 Bacteria 1213
84 Ga0207657_10128465 3300025919 Bacteria 2079
85 Ga0207661_11051847 3300025944 Bacteria 750
86 Ga0207679_10034650 3300025945 Bacteria 3564
87 Ga0207712_10389138 3300025961 Bacteria 1169
88 Ga0207677_10318544 3300026023 Bacteria 1291
89 Ga0207678_10141495 3300026067 Bacteria 2053
90 Ga0207675_100087624 3300026118 Bacteria 2924
91 Ga0207683_10416678 3300026121 Bacteria 1237
92 Ga0207683_10729134 3300026121 Bacteria 919
93 Ga0209813_10005737 3300027866 Bacteria 3030
94 Ga0307408_100620821 3300031548 Bacteria 963
95 Ga0307410_10150069 3300031852 Bacteria 1734
96 Ga0307407_10155973 3300031903 Bacteria 1489
97 Ga0307407_10387660 3300031903 Bacteria 999
98 Ga0307407_10487343 3300031903 Bacteria 901
99 Ga0307412_10048757 3300031911 Bacteria 2787
100 Ga0307412_10050851 3300031911 Bacteria 2737
101 Ga0307412_10213314 3300031911 Bacteria 1475
102 Ga0307412_10260886 3300031911 Bacteria 1351
103 Ga0307409_100037059 3300031995 Bacteria 3592
104 Ga0307409_100220146 3300031995 Bacteria 1713
105 Ga0307409_100304737 3300031995 Bacteria 1484
106 Ga0307409_101436331 3300031995 Bacteria 716
107 Ga0307416_100015802 3300032002 Bacteria 5225
108 Ga0307416_100091386 3300032002 Bacteria 2614
109 Ga0307411_10328964 3300032005 Bacteria 1237
110 Ga0307411_10377982 3300032005 Bacteria 1164
111 Ga0307415_100100083 3300032126 Bacteria 2123
112 Ga0373925_0393426 3300037068 Bacteria 1130
113 Ga0395899_0058455 3300037312 Bacteria 2844
114 Ga0395900_0153263 3300037418 Bacteria 2354
115 Ga0395900_0282295 3300037418 Bacteria 1652
116 Ga0395898_0050329 3300037466 Bacteria 4078
117 Ga0395898_0098949 3300037466 Bacteria 2801
118 Ga0395898_0660856 3300037466 Bacteria 987
119 Ga0395905_0019244 3300037471 Bacteria 6473
120 Ga0395905_0593912 3300037471 Bacteria 1009
121 Ga0436364_0045320 3300037853 Bacteria 2887
122 Ga0395901_0057129 3300038443 Bacteria 4059
123 Ga0395901_0469372 3300038443 Bacteria 1285
124 Ga0242420_009196 3300038996 Bacteria 1618
125 Ga0436365_1913423 3300039437 Bacteria 897
126 Ga0439447_065891 3300041407 Bacteria 847
127 Ga0451839_1050493 3300041496 Bacteria 1210
128 Ga0451849_0852116 3300041505 Bacteria 752
129 Ga0439431_0007544 3300041997 Bacteria 2428
130 Ga0439457_017572 3300042014 Bacteria 1589
131 Ga0439434_0007352 3300042435 Bacteria 3228
132 Ga0466972_0012544 3300044658 Bacteria 4259
133 Ga0466972_0043695 3300044658 Bacteria 2175
134 Ga0466972_0064425 3300044658 Bacteria 1754
135 Ga0466972_0114232 3300044658 Bacteria 1275
136 Ga0466972_0193992 3300044658 Bacteria 952
137 Ga0466965_0009043 3300044683 Bacteria 4622
138 Ga0466965_0032883 3300044683 Bacteria 2534
139 Ga0466965_0055736 3300044683 Bacteria 1967
140 Ga0466965_0064629 3300044683 Bacteria 1832
141 Ga0466965_0094985 3300044683 Bacteria 1520
142 Ga0466965_0113322 3300044683 Bacteria 1395
143 Ga0466966_0003853 3300044684 Bacteria 9897
144 Ga0466966_0078246 3300044684 Bacteria 2062
145 Ga0466966_0158533 3300044684 Bacteria 1378
146 Ga0466966_0179923 3300044684 Bacteria 1283
147 Ga0466966_0329290 3300044684 Bacteria 918
148 Ga0466961_0005548 3300044693 Bacteria 7960
149 Ga0466961_0114574 3300044693 Bacteria 1694
150 Ga0466961_0318024 3300044693 Bacteria 949
151 Ga0466961_0358681 3300044693 Bacteria 887
152 Ga0466961_0399616 3300044693 Bacteria 834
153 Ga0466963_0016063 3300044694 Bacteria 4649
154 Ga0466963_0124874 3300044694 Bacteria 1774
155 Ga0466963_0135053 3300044694 Bacteria 1706
156 Ga0466963_0616585 3300044694 Bacteria 766
157 Ga0466964_0019411 3300044706 Bacteria 2612
158 Ga0466964_0215838 3300044706 Bacteria 929
159 Ga0466971_0008905 3300044719 Bacteria 4386
160 Ga0466971_0032187 3300044719 Bacteria 2349
161 Ga0466971_0046130 3300044719 Bacteria 1958
162 Ga0466968_0131056 3300044735 Bacteria 1141
163 Ga0466970_0009095 3300044765 Bacteria 5013
164 Ga0466970_0010871 3300044765 Bacteria 4629
165 Ga0466970_0014701 3300044765 Bacteria 4021
166 Ga0466970_0015919 3300044765 Bacteria 3872
167 Ga0466970_0025459 3300044765 Bacteria 3098
168 Ga0466970_0043662 3300044765 Bacteria 2386
169 Ga0466970_0085245 3300044765 Bacteria 1711
170 Ga0466970_0198480 3300044765 Bacteria 1116
171 Ga0466970_0208397 3300044765 Bacteria 1088
172 Ga0466970_0217892 3300044765 Bacteria 1065
173 Ga0466957_0012804 3300044842 Bacteria 4860
174 Ga0466957_0070670 3300044842 Bacteria 2157
175 Ga0466957_0276300 3300044842 Bacteria 1123
176 Ga0466957_0347399 3300044842 Bacteria 1006
177 Ga0466957_0762355 3300044842 Bacteria 686
178 Ga0466960_0011816 3300044901 Bacteria 3668
179 Ga0466960_0063539 3300044901 Bacteria 1818
180 Ga0466960_0072749 3300044901 Bacteria 1714
181 Ga0466960_0072778 3300044901 Bacteria 1714
182 Ga0466960_0231635 3300044901 Bacteria 1020
183 Ga0466960_0441100 3300044901 Bacteria 755
184 Ga0466959_0006536 3300045049 Bacteria 8087
185 Ga0466959_0149696 3300045049 Bacteria 1646
186 Ga0466958_0065979 3300045836 Bacteria 2209
187 Ga0466958_0185199 3300045836 Bacteria 1322
188 Ga0466958_0359947 3300045836 Bacteria 937
189 Ga0466967_0059990 3300045976 Bacteria 3369
190 Ga0466967_0110932 3300045976 Bacteria 2520
191 Ga0466967_0197233 3300045976 Bacteria 1905
192 Ga0466967_0256148 3300045976 Bacteria 1673
193 Ga0466967_0858833 3300045976 Bacteria 902
194 Ga0466967_0865162 3300045976 Bacteria 898
195 Ga0495582_0157188 3300046473 Bacteria 1292
196 Ga0495581_0224493 3300047315 Bacteria 1099
197 Ga0496100_0252341 3300048903 Bacteria 1305
198 Ga0496101_0115897 3300048904 Bacteria 2021
199 Ga0496102_0019982 3300048905 Bacteria 5909
200 Ga0496105_0183179 3300048908 Bacteria 1714
201 Ga0496108_0089478 3300048911 Bacteria 2616
202 Ga0496109_0263104 3300048912 Bacteria 1625
203 Ga0496110_0136086 3300048913 Bacteria 2220
204 Ga0496113_0278030 3300048916 Bacteria 1338
205 Ga0496114_0168678 3300048917 Bacteria 1907
206 Ga0501306_030360 3300049127 Bacteria 800
207 Ga0501308_027627 3300049128 Bacteria 746
208 Ga0501305_037952 3300049161 Bacteria 775
209 Ga0501305_042216 3300049161 Bacteria 745
210 Ga0501311_028600 3300049527 Bacteria 796
211 Ga0501311_034280 3300049527 Bacteria 747
212 Ga0501313_022759 3300049529 Bacteria 783
213 Ga0501313_033893 3300049529 Bacteria 670
214 Ga0501315_037042 3300049531 Bacteria 725
215 Ga0501316_021909 3300049532 Bacteria 811
216 Ga0501321_008945 3300049537 Bacteria 1073
217 Ga0501321_011746 3300049537 Bacteria 981
218 Ga0501325_004986 3300049541 Bacteria 1039
219 Ga0501031_0012622 3300049568 Bacteria 5518
220 Ga0501031_0102452 3300049568 Bacteria 1868
221 Ga0501032_0003909 3300049569 Bacteria 11303
222 Ga0501033_0004416 3300049570 Bacteria 11255
223 Ga0501034_0033751 3300049571 Bacteria 5188
224 Ga0501034_0038705 3300049571 Bacteria 4829
225 Ga0501034_0919754 3300049571 Bacteria 762
226 Ga0501036_0037997 3300049572 Bacteria 4073
227 Ga0501036_0052191 3300049572 Bacteria 3463
228 Ga0501037_0001949 3300049573 Bacteria 14915
229 Ga0501037_0050138 3300049573 Bacteria 3056
230 Ga0501038_0082584 3300049574 Bacteria 2705
231 Ga0501038_0216885 3300049574 Bacteria 1528
232 Ga0501038_0325087 3300049574 Bacteria 1202
233 Ga0501039_0033518 3300049575 Bacteria 3960
234 Ga0501039_0578513 3300049575 Bacteria 881
235 Ga0501039_0698543 3300049575 Bacteria 793
236 Ga0501041_0065325 3300049577 Bacteria 2229
237 Ga0501041_0472330 3300049577 Bacteria 797
238 Ga0501042_0116074 3300049578 Bacteria 1927
239 Ga0501043_0005324 3300049579 Bacteria 10402
240 Ga0501043_0105742 3300049579 Bacteria 2211
241 Ga0501043_0153137 3300049579 Bacteria 1804
242 Ga0501043_0228371 3300049579 Bacteria 1438
243 Ga0501046_0000774 3300049580 Bacteria 30910
244 Ga0501046_0012873 3300049580 Bacteria 7113
245 Ga0501047_0127987 3300049581 Bacteria 2419
246 Ga0501047_0261409 3300049581 Bacteria 1578
247 Ga0501048_0005332 3300049582 Bacteria 9785
248 Ga0501048_0240740 3300049582 Bacteria 1284
249 Ga0501048_0268131 3300049582 Bacteria 1213
250 Ga0501067_0003808 3300049583 Bacteria 8321
251 Ga0501067_0058651 3300049583 Bacteria 2131
252 Ga0501067_0167638 3300049583 Bacteria 1223
253 Ga0501068_0169578 3300049584 Bacteria 1377
254 Ga0501068_0419258 3300049584 Bacteria 864
255 Ga0501069_0005675 3300049585 Bacteria 6501
256 Ga0501069_0395814 3300049585 Bacteria 817
257 Ga0501070_0023278 3300049586 Bacteria 5188
258 Ga0501070_0548291 3300049586 Bacteria 926
259 Ga0501071_0054274 3300049587 Bacteria 2892
260 Ga0501072_0095243 3300049588 Bacteria 2366
261 Ga0501073_0078993 3300049589 Bacteria 2290
262 Ga0501074_0066822 3300049590 Bacteria 2586
263 Ga0501076_0105277 3300049592 Bacteria 2277
264 Ga0501077_0401998 3300049593 Bacteria 876
265 Ga0501079_0189967 3300049741 Bacteria 1603
266 Ga0501080_0145086 3300049742 Bacteria 2194
267 Ga0501083_0088003 3300049744 Bacteria 2054
268 Ga0501271_015018 3300049768 Bacteria 862
269 Ga0501035_0099236 3300049822 Bacteria 2556
270 Ga0501044_0073589 3300049823 Bacteria 3472
271 Ga0501044_0146192 3300049823 Bacteria 2349
272 nmdc:mga03683_4881_c1 3300050489 Bacteria 4478
273 nmdc:mga03683_69947_c1 3300050489 Bacteria 1498
274 nmdc:mga03n38_206524_c1 3300050490 Bacteria 1019
275 nmdc:mga03n38_7244_c1 3300050490 Bacteria 3914
276 nmdc:mga00v17_16605_c1 3300050491 Bacteria 4151
277 nmdc:mga0yw44_20566_c1 3300050492 Bacteria 3666
278 nmdc:mga0yw44_2207_c1 3300050492 Bacteria 8203
279 nmdc:mga0yw44_312487_c1 3300050492 Bacteria 1054
280 nmdc:mga06z11_12477_c1 3300050494 Bacteria 3698
281 nmdc:mga04h51_2301_c1 3300050495 Bacteria 4516
282 nmdc:mga07m45_336021_c1 3300050496 Bacteria 878
283 nmdc:mga07m45_54419_c1 3300050496 Bacteria 2262
284 Ga0495601_0190384 3300053077 Bacteria 1341
285 Ga0500644_0064487 3300053088 Bacteria 1302
286 Ga0500556_0000337 3300053104 Bacteria 34999
287 Ga0500573_0004596 3300053140 Bacteria 7295
288 Ga0500620_163128 3300053155 Bacteria 773
289 Ga0501082_0186740 3300060353 Bacteria 1804
290 Ga0466962_0014115 3300061719 Bacteria 3849
291 Ga0466962_0035218 3300061719 Bacteria 2396
292 Ga0466962_0036389 3300061719 Bacteria 2356
293 Ga0530510_0143723 3300061734 Bacteria 1759
294 2643827894 2643221561 Bacteria 4984412
295 2644102904 2643221617 Bacteria 5139111
296 2644118563 2643221620 Bacteria 5134593
297 2644532338 2643221696 Bacteria 5431823
298 2676474145 2675903058 Bacteria 6822861
299 2738870429 2738541305 Bacteria 4910150
300 2774394191 2773857762 Bacteria 5971770
301 2809194953 2808606439 Bacteria 5952208
302 2812331557 2811994874 Bacteria 5367947
303 2812349857 2811994878 Bacteria 5992952
304 2827629036 2827628540 Bacteria 6858585
305 2855389435 2855386786 Bacteria 4752232
306 2891972568 2891968417 Bacteria 5821697
307 2984579626 2984576629 Bacteria 4248407
308 2990257233 2990256926 Bacteria 4252839
309 Ga0070684_100063080
310 LJQas_1012817
311 JGI24739J22299_10046047
312 JGI24735J21928_10017388
313 Ga0006778J45830_1005015
314 Ga0006778J45830_1010977
315 Ga0006778J45830_1013285
316 Ga0006778J45830_1034223
317 Ga0006759J45824_1006251
318 Ga0006758J48902_1011176
319 Ga0006777J48905_1007167
320 Ga0006777J48905_1025918
321 Ga0007417J51691_1007055
322 Ga0007417J51691_1027988
323 Ga0007417J51691_1049041
324 Ga0006781J51513_1008102
325 Ga0006781J51513_1010069
326 Ga0007410J51695_1006815
327 Ga0007410J51695_1013757
328 Ga0007410J51695_1016967
329 Ga0007409J51694_1013940
330 Ga0007409J51694_1015193
331 Ga0007409J51694_1019917
332 Ga0007409J51694_1030011
333 Ga0007416J51690_1009752
334 Ga0007416J51690_1027543
335 Ga0007416J51690_1034170
336 Ga0006562J51391_1012673
337 Ga0007429J51699_1003930
338 Ga0007429J51699_1010641
339 Ga0007429J51699_1016478
340 Ga0007429J51699_1031394
341 Ga0007411J51799_104370
342 Ga0007411J51799_108493
343 Ga0007415J51800_105804
344 Ga0007415J51800_121784
345 Ga0032354_1004972
346 Ga0032354_1010535
347 Ga0032354_1019328
348 Ga0032354_1039926
349 Ga0058862_10025776
350 Ga0070683_100645008
351 Ga0070682_100168522
352 Ga0070660_100040161
353 Ga0070674_100514734
354 Ga0070714_100061000
355 Ga0070662_100191424
356 Ga0070684_100116371
357 Ga0070664_100107597
358 Ga0081539_10116763
359 Ga0075365_10012183
360 Ga0075365_10018101
361 Ga0075365_10060940
362 Ga0075365_10179670
363 Ga0075368_10014065
364 Ga0075363_100045798
365 Ga0075363_100203509
366 Ga0075362_10014714
367 Ga0075367_10029501
368 Ga0075367_10174664
369 Ga0075370_10006134
370 Ga0105245_10694179
371 Ga0105243_10517379
372 Ga0105243_11014146
373 Ga0105242_10440781
374 Ga0105237_10337569
375 Ga0105239_10111166
376 Ga0105239_10372358
377 Ga0157370_10543743
378 Ga0157372_11299117
379 Ga0182008_10188117
380 Ga0197907_10520663
381 Ga0197907_11387191
382 Ga0206355_1225258
383 Ga0206351_10153271
384 Ga0206354_10707360
385 Ga0206354_11471158
386 Ga0206353_10957713
387 Ga0154015_1631810
388 Ga0213875_10038780
389 Ga0207647_10113724
390 Ga0207647_10166125
391 Ga0207671_10327385
392 Ga0207657_10128465
393 Ga0207661_11051847
394 Ga0207679_10034650
395 Ga0207712_10389138
396 Ga0207677_10318544
397 Ga0207678_10141495
398 Ga0207675_100087624
399 Ga0207683_10416678
400 Ga0207683_10729134
401 Ga0209813_10005737
402 Ga0307408_100620821
403 Ga0307410_10150069
404 Ga0307407_10155973
405 Ga0307407_10387660
406 Ga0307407_10487343
407 Ga0307412_10048757
408 Ga0307412_10050851
409 Ga0307412_10213314
410 Ga0307412_10260886
411 Ga0307409_100037059
412 Ga0307409_100220146
413 Ga0307409_100304737
414 Ga0307409_101436331
415 Ga0307416_100015802
416 Ga0307416_100091386
417 Ga0307411_10328964
418 Ga0307411_10377982
419 Ga0307415_100100083
420 Ga0373925_0393426
421 Ga0395899_0058455
422 Ga0395900_0153263
423 Ga0395900_0282295
424 Ga0395898_0050329
425 Ga0395898_0098949
426 Ga0395898_0660856
427 Ga0395905_0019244
428 Ga0395905_0593912
429 Ga0436364_0045320
430 Ga0395901_0057129
431 Ga0395901_0469372
432 Ga0242420_009196
433 Ga0436365_1913423
434 Ga0439447_065891
435 Ga0451839_1050493
436 Ga0451849_0852116
437 Ga0439431_0007544
438 Ga0439457_017572
439 Ga0439434_0007352
440 Ga0466972_0012544
441 Ga0466972_0043695
442 Ga0466972_0064425
443 Ga0466972_0114232
444 Ga0466972_0193992
445 Ga0466965_0009043
446 Ga0466965_0032883
447 Ga0466965_0055736
448 Ga0466965_0064629
449 Ga0466965_0094985
450 Ga0466965_0113322
451 Ga0466966_0003853
452 Ga0466966_0078246
453 Ga0466966_0158533
454 Ga0466966_0179923
455 Ga0466966_0329290
456 Ga0466961_0005548
457 Ga0466961_0114574
458 Ga0466961_0318024
459 Ga0466961_0358681
460 Ga0466961_0399616
461 Ga0466963_0016063
462 Ga0466963_0124874
463 Ga0466963_0135053
464 Ga0466963_0616585
465 Ga0466964_0019411
466 Ga0466964_0215838
467 Ga0466971_0008905
468 Ga0466971_0032187
469 Ga0466971_0046130
470 Ga0466968_0131056
471 Ga0466970_0009095
472 Ga0466970_0010871
473 Ga0466970_0014701
474 Ga0466970_0015919
475 Ga0466970_0025459
476 Ga0466970_0043662
477 Ga0466970_0085245
478 Ga0466970_0198480
479 Ga0466970_0208397
480 Ga0466970_0217892
481 Ga0466957_0012804
482 Ga0466957_0070670
483 Ga0466957_0276300
484 Ga0466957_0347399
485 Ga0466957_0762355
486 Ga0466960_0011816
487 Ga0466960_0063539
488 Ga0466960_0072749
489 Ga0466960_0072778
490 Ga0466960_0231635
491 Ga0466960_0441100
492 Ga0466959_0006536
493 Ga0466959_0149696
494 Ga0466958_0065979
495 Ga0466958_0185199
496 Ga0466958_0359947
497 Ga0466967_0059990
498 Ga0466967_0110932
499 Ga0466967_0197233
500 Ga0466967_0256148
501 Ga0466967_0858833
502 Ga0466967_0865162
503 Ga0495582_0157188
504 Ga0495581_0224493
505 Ga0496100_0252341
506 Ga0496101_0115897
507 Ga0496102_0019982
508 Ga0496105_0183179
509 Ga0496108_0089478
510 Ga0496109_0263104
511 Ga0496110_0136086
512 Ga0496113_0278030
513 Ga0496114_0168678
514 Ga0501306_030360
515 Ga0501308_027627
516 Ga0501305_037952
517 Ga0501305_042216
518 Ga0501311_028600
519 Ga0501311_034280
520 Ga0501313_022759
521 Ga0501313_033893
522 Ga0501315_037042
523 Ga0501316_021909
524 Ga0501321_008945
525 Ga0501321_011746
526 Ga0501325_004986
527 Ga0501031_0012622
528 Ga0501031_0102452
529 Ga0501032_0003909
530 Ga0501033_0004416
531 Ga0501034_0033751
532 Ga0501034_0038705
533 Ga0501034_0919754
534 Ga0501036_0037997
535 Ga0501036_0052191
536 Ga0501037_0001949
537 Ga0501037_0050138
538 Ga0501038_0082584
539 Ga0501038_0216885
540 Ga0501038_0325087
541 Ga0501039_0033518
542 Ga0501039_0578513
543 Ga0501039_0698543
544 Ga0501041_0065325
545 Ga0501041_0472330
546 Ga0501042_0116074
547 Ga0501043_0005324
548 Ga0501043_0105742
549 Ga0501043_0153137
550 Ga0501043_0228371
551 Ga0501046_0000774
552 Ga0501046_0012873
553 Ga0501047_0127987
554 Ga0501047_0261409
555 Ga0501048_0005332
556 Ga0501048_0240740
557 Ga0501048_0268131
558 Ga0501067_0003808
559 Ga0501067_0058651
560 Ga0501067_0167638
561 Ga0501068_0169578
562 Ga0501068_0419258
563 Ga0501069_0005675
564 Ga0501069_0395814
565 Ga0501070_0023278
566 Ga0501070_0548291
567 Ga0501071_0054274
568 Ga0501072_0095243
569 Ga0501073_0078993
570 Ga0501074_0066822
571 Ga0501076_0105277
572 Ga0501077_0401998
573 Ga0501079_0189967
574 Ga0501080_0145086
575 Ga0501083_0088003
576 Ga0501271_015018
577 Ga0501035_0099236
578 Ga0501044_0073589
579 Ga0501044_0146192
580 nmdc:mga03683_4881_c1
581 nmdc:mga03683_69947_c1
582 nmdc:mga03n38_206524_c1
583 nmdc:mga03n38_7244_c1
584 nmdc:mga00v17_16605_c1
585 nmdc:mga0yw44_20566_c1
586 nmdc:mga0yw44_2207_c1
587 nmdc:mga0yw44_312487_c1
588 nmdc:mga06z11_12477_c1
589 nmdc:mga04h51_2301_c1
590 nmdc:mga07m45_336021_c1
591 nmdc:mga07m45_54419_c1
592 Ga0495601_0190384
593 Ga0500644_0064487
594 Ga0500556_0000337
595 Ga0500573_0004596
596 Ga0500620_163128
597 Ga0501082_0186740
598 Ga0466962_0014115
599 Ga0466962_0035218
600 Ga0466962_0036389
601 Ga0530510_0143723
602 2643827894
603 2644102904
604 2644118563
605 2644532338
606 2676474145
607 2738870429
608 2774394191
609 2809194953
610 2812331557
611 2812349857
612 2827629036
613 2855389435
614 2891972568
615 2984579626
616 2990257233

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01625

PMSR

Peptide methionine sulfoxide reductase

50

199

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
6agv-assembly1.cif.gz_A crystal structure of apo mouse msra 0.9461 10 201
1fva-assembly2.cif.gz_B crystal structure of bovine methionine sulfoxide reductase 0.9449 11 213
6agv-assembly1.cif.gz_A crystal structure of apo mouse msra 0.9413 10 201
1ff3-assembly3.cif.gz_C structure of the peptide methionine sulfoxide reductase from escherichia coli 0.9407 11 196
1fva-assembly2.cif.gz_B crystal structure of bovine methionine sulfoxide reductase 0.9404 11 213
ID Description Score Start End Superfamily
af_P0A084_1_166_3.30.1060.10 Alpha Beta;2-Layer Sandwich;Peptide Methionine Sulfoxide Reductase; Chain A;Peptide methionine sulphoxide reductase MsrA 0.9364 47 200 3.30.1060.10
af_Q551H3_1_147_3.30.1060.10 Alpha Beta;2-Layer Sandwich;Peptide Methionine Sulfoxide Reductase; Chain A;Peptide methionine sulphoxide reductase MsrA 0.931 49 197 3.30.1060.10
1ff3B00 Alpha Beta;2-Layer Sandwich;Peptide Methionine Sulfoxide Reductase; Chain A;Peptide methionine sulphoxide reductase MsrA 0.9286 7 199 3.30.1060.10
af_Q551H3_1_147_3.30.1060.10 Alpha Beta;2-Layer Sandwich;Peptide Methionine Sulfoxide Reductase; Chain A;Peptide methionine sulphoxide reductase MsrA 0.9128 49 197 3.30.1060.10
1ff3B00 Alpha Beta;2-Layer Sandwich;Peptide Methionine Sulfoxide Reductase; Chain A;Peptide methionine sulphoxide reductase MsrA 0.9101 7 199 3.30.1060.10
ID Description Score Start End GO Terms
AF-A0A450UUA4-F1-model_v4 Peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) 0.9585 51 213 GO:0005737
GO:0008113
GO:0034599
GO:0036211
GO:0036456
AF-A0A6J6FZT5-F1-model_v4 peptide-methionine (S)-S-oxide reductase (EC 1.8.4.11) 0.9578 69 214 GO:0005737
GO:0008113
GO:0034599
GO:0036456
AF-E1VQ90-F1-model_v4 Peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) 0.9575 11 213 GO:0005737
GO:0008113
GO:0034599
GO:0036211
GO:0036456
AF-A0A6P7T9S8-F1-model_v4 peptide-methionine (S)-S-oxide reductase (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Protein-methionine-S-oxide reductase) 0.9569 9 214 GO:0005737
GO:0008113
GO:0034599
GO:0036456
AF-A0A381NS22-F1-model_v4 peptide-methionine (S)-S-oxide reductase (EC 1.8.4.11) 0.9565 8 212 GO:0005737
GO:0008113
GO:0034599
GO:0036456

Map