|
Taxon Oid |
3300003577
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Avena fatua rhizosphere microbial communities from Hopland, California, USA |
| Genome Name Sample Name |
Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_32 (Metagenome Metatranscriptome, Counting Only) |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300003577 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Ncbi Species |
Avena fatua rhizosphere microbial communities from Hopland, California, USA |
| Img Submission Id |
51690 |
|
Gold Analysis Project Id
|
Ga0007416
|
| Gold Analysis Project Type |
Metatranscriptome Analysis |
|
Gold Sequencing Project Id
|
Gp0072756
|
|
Gold Study Id
|
Gs0110148
|
| Add Date |
10/15/2014 00:00:00 |
| Assembly Method |
rnnotator v. 3.3.2 |
| Has Coverage |
False |
| Public Release Date |
07/31/2015 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Neha Varghese |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected]; [email protected]; [email protected] |
| Alt2 Contact Names |
Eoin Brodie; Erin Nuccio; Jennifer Pett-Ridge; Mary Firestone |
| Contact Email |
[email protected], [email protected]; [email protected] |
| Contact Name |
Jennifer Pett-Ridge, Jennifer Pett-Ridge; Erin Nuccio |
| Award Doi |
10.46936/10.25585/60000755 |
| Funding Program |
CSP |
| Funding Year |
2014 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA365994 |
| Ncbi Biosample Accession |
SAMN06268042 |
| Sequencing Method |
Illumina HiSeq 2500 |
| Sequencing Strategy |
Metatranscriptome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Geographic Location |
Hopland, California, USA |
| Habitat |
Avena fatua rhizosphere |
| Isolation |
Hopland, California, USA |
| Isolation Country |
8855 |
| Latitude |
38.973 |
| Longitude |
-123.117 |
| Sample Collection Date |
2013/3/18 |
| Host Name |
Poaceae |
| Genome Size Assembled |
108233021 |
| Gene Count Assembled |
324365 |