|
Taxon Oid |
3300038996
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Genetically engineered switchgrass root microbial communities from Knoxville, USA |
| Genome Name Sample Name |
Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot19 |
| Sequencing Center |
University of Tennessee |
| Img Genome Id |
3300038996 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Ncbi Species |
Genetically engineered switchgrass root microbial communities from Knoxville, USA |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.5.0.15 |
| Img Submission Id |
216959 |
|
Gold Analysis Project Id
|
Ga0242420
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0281678
|
|
Gold Study Id
|
Gs0118002
|
| Add Date |
04/15/2020 00:00:00 |
| Assembly Method |
Custom JGI assembly v. Nielsen et. al. |
| Has Coverage |
True |
| Public Release Date |
04/15/2020 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Rnd Project |
True |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA254830 |
| Ncbi Biosample Accession |
SAMN02905599 |
| Sequencing Method |
Illumina HiSeq 2000 |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Relevance |
Environmental |
| Geographic Location |
Knoxville, USA |
| Habitat |
Plant roots |
| Isolation |
Soil |
| Isolation Country |
8855 |
| Latitude |
35.9044 |
| Longitude |
-83.9538 |
| Sample Collection Date |
2012/11/20 |
| Host Name |
Panicum virgatum |
| Genome Size Assembled |
382591772 |
| Gene Count Assembled |
1102718 |