F385295

General Info

Members Datasets Scaffolds Average Seq Length
282 228 224 203

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8054609563|8054613738
Length 221
Sequence FERNVKGLLGTKLGMTQLWDENNKVVPVTVIAASTNVVTQVRQPEVDGYNAIQVGYGEIEARKVNSPEAGHFTKAGVTPRRHVAEIRTADAATYTVGQELGVDTFAAGEEIDVTGTSKGKGFAGVMKRHGFHGVGASHGAHRNHRKPGSIGACATPGRVFKGTRMAGRMGNDTVTTQNLTVHAVDAEKGLILLKGAVPGPRGGLVVLRSAAKSTAVSGKEA

Samples

Sample ID Description Type Environment
1 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
2 2643221576 Nocardioides sp. Root614 Isolate Unclassified
3 2643221590 Nocardioides sp. Root682 Isolate Unclassified
4 2643221604 Nocardioides sp. Root190 Isolate Unclassified
5 2643221613 Oerskovia sp. Root22 Isolate Unclassified
6 2643221641 Nocardioides sp. Root122 Isolate Unclassified
7 2643221649 Leifsonia sp. Root4 Isolate Unclassified
8 2643221694 Cellulomonas sp. Root137 Isolate Unclassified
9 2643221721 Oerskovia sp. Root918 Isolate Unclassified
10 2643221722 Cellulomonas sp. Root930 Isolate Unclassified
11 2690315906 Arthrobacter sp. OY3WO11 Isolate Unclassified
12 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
13 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
14 2739367898 Nocardioides sp. CF479 Isolate Unclassified
15 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
16 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
17 2775506735 Arthrobacter sp. S95 1704 Isolate Unclassified
18 2808606357 Arthrobacter sp. SLBN-122 Isolate Unclassified
19 2808606360 Arthrobacter sp. SLBN-112 Isolate Unclassified
20 2808606366 Arthrobacter sp. SLBN-83 Isolate Unclassified
21 2808606370 Arthrobacter sp. SLBN-100 Isolate Unclassified
22 2808606371 Arthrobacter sp. SLBN-53 Isolate Unclassified
23 2811994871 Arthrobacter sp. SLBN-179 Isolate Unclassified
24 2811994880 Cellulomonas sp. SLBN-39 Isolate Unclassified
25 2835188231 Isoptericola variabilis JZ7 Isolate Unclassified
26 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
27 2857740372 Paenarthrobacter sp. R-74611 Isolate Unclassified
28 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
29 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
30 2904497146 Arthrobacter sp. 1276 Isolate Rhizosphere
31 2904776348 Paenarthrobacter sp. 1092 Isolate Rhizosphere
32 2910809715 Paenarthrobacter sp. CM16 Isolate Unclassified
33 2919034639 Paenarthrobacter nitroguajacolicus 247 Isolate Rhizosphere
34 2919059106 Arthrobacter sp. 1088 Isolate Rhizosphere
35 2919391150 Arthrobacter ipis 2973 Isolate Unclassified
36 2919538618 Paenarthrobacter nitroguajacolicus 3945 Isolate Unclassified
37 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
38 2932426870 Paenarthrobacter sp. 4246 Isolate Rhizosphere
39 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
40 2933418574 Jeotgalibacillus campisalis 4120 Isolate Rhizosphere
41 2935890801 Oerskovia enterophila 3230 Isolate Rhizosphere
42 2939598168 Arthrobacter sp. 754 Isolate Rhizosphere
43 2939647034 Arthrobacter sp. 2762 Isolate Rhizosphere
44 2939674588 Arthrobacter bambusae 3552 Isolate Rhizosphere
45 2945916053 Arthrobacter ulcerisalmonis W1I2 Isolate Rhizosphere
46 2945920336 Pseudarthrobacter siccitolerans W1I3 Isolate Rhizosphere
47 2945941187 Arthrobacter pascens W1I14 Isolate Rhizosphere
48 2945956166 Arthrobacter globiformus W2I3 Isolate Rhizosphere
49 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
50 2946037020 Arthrobacter sp. W4I7 Isolate Rhizosphere
51 2946059875 Arthrobacter sp. SLBN-112 Isolate Rhizosphere
52 2953998280 Pseudarthrobacter sp. W1I19 Isolate Rhizosphere
53 2974302888 Pseudarthrobacter sp. SORGH_AS 212 Isolate Unclassified
54 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
55 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
56 3300004785 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-1 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
57 3300004798 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
58 3300004800 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
59 3300004801 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
60 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
61 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
62 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
63 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
64 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
65 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
66 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
67 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
68 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
69 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
70 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
71 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
72 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
73 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
74 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
75 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
76 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
77 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
78 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
79 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
80 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
81 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
82 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
83 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
84 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
85 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
86 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
87 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
88 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
89 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
90 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
91 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
92 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
93 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
94 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
95 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
96 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
97 3300020075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
98 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
99 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
100 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
101 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
102 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
103 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
104 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
115 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
116 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
117 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
118 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
120 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
121 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
122 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
123 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
124 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
125 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
126 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
127 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
128 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
129 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
130 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
131 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
132 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
133 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
134 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
135 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
136 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
137 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
138 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
139 3300041444 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaT Metatranscriptome Rhizoplane
140 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
141 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
142 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
143 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
144 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
145 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
146 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
147 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
148 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
149 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
150 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
151 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
152 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
153 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
154 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
155 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
156 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
157 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
158 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
159 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
160 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
161 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
162 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
163 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
164 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
165 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
166 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
167 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
168 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
169 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
170 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
171 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
172 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
173 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
174 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
175 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
176 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
177 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
178 3300049128 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
179 3300049129 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
180 3300049130 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
181 3300049160 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
182 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
183 3300049162 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
184 3300049527 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
185 3300049528 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
186 3300049529 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
187 3300049530 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
188 3300049532 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
189 3300049533 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
190 3300049534 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
191 3300049535 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
192 3300049536 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_A_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
193 3300049538 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_A_3_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
194 3300049539 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
195 3300049540 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
196 3300049541 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_A_4_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
197 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
198 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
199 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
200 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
201 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
202 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
203 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
204 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
205 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
206 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
207 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
208 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
209 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
210 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
211 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
212 3300059491 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 12R_AW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
213 3300059506 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 52R_CW_T2_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
214 3300059604 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 63R_AD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
215 3300059607 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 163R_SW_T3_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
216 3300059630 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 165R_SD_T3_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
217 3300059631 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 168R_SD_T3_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
218 3300059641 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 9R_AW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
219 3300059645 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 18R_SW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
220 3300059649 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 68R_SW_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
221 3300059657 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 156R_AW_T3_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
222 3300059658 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 178R_AW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
223 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
224 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
225 8054107350 Arthrobacter rhizosphaerae CCNWLXL 1-35 Isolate Rhizosphere
226 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule
227 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere
228 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 53.9
Metatranscriptomes 25.53
Isolates 20.57

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.06
Nodule 0.35
Rhizoplane 9.57
Rhizosphere 74.47
Stem 0
Stem Tuber 0
Unclassified 14.54

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10016966 3300002067 Bacteria 2254
2 Ga0058858_1029911 3300004785 Bacteria 1327
3 Ga0058858_1039255 3300004785 Bacteria 1441
4 Ga0058858_1041535 3300004785 Bacteria 852
5 Ga0058859_10074740 3300004798 Bacteria 1357
6 Ga0058861_10094103 3300004800 Bacteria 1075
7 Ga0058861_10134196 3300004800 Bacteria 987
8 Ga0058860_10121489 3300004801 Bacteria 1138
9 Ga0058860_10137925 3300004801 Bacteria 1254
10 Ga0065714_10012462 3300005288 Bacteria 2109
11 Ga0070658_10006748 3300005327 Bacteria 9291
12 Ga0070658_10507997 3300005327 Bacteria 1041
13 Ga0070683_100755781 3300005329 Bacteria 931
14 Ga0070660_100086807 3300005339 Bacteria 2462
15 Ga0070660_100102224 3300005339 Bacteria 2272
16 Ga0070660_100295401 3300005339 Bacteria 1327
17 Ga0070692_10027606 3300005345 Bacteria 2815
18 Ga0070675_100218422 3300005354 Bacteria 1659
19 Ga0070674_100045759 3300005356 Bacteria 2990
20 Ga0070674_100145264 3300005356 Bacteria 1785
21 Ga0070673_100826417 3300005364 Bacteria 856
22 Ga0068867_100179496 3300005459 Bacteria 1682
23 Ga0070685_10245993 3300005466 Bacteria 1182
24 Ga0070707_100053894 3300005468 Bacteria 3856
25 Ga0070698_100003093 3300005471 Bacteria 18343
26 Ga0070679_100087466 3300005530 Bacteria 3103
27 Ga0070679_100109002 3300005530 Bacteria 2755
28 Ga0070665_100913310 3300005548 Bacteria 890
29 Ga0068852_100258004 3300005616 Bacteria 1673
30 Ga0068851_10044668 3300005834 Bacteria 2237
31 Ga0068870_10431362 3300005840 Bacteria 865
32 Ga0068858_100725409 3300005842 Bacteria 968
33 Ga0081539_10001524 3300005985 Bacteria 38861
34 Ga0075365_10194132 3300006038 Bacteria 1421
35 Ga0075365_10224109 3300006038 Bacteria 1319
36 Ga0097621_100332199 3300006237 Bacteria 1348
37 Ga0068865_100106360 3300006881 Bacteria 2062
38 Ga0105245_10619151 3300009098 Bacteria 1110
39 Ga0105245_10888696 3300009098 Bacteria 932
40 Ga0105243_10401489 3300009148 Bacteria 1273
41 Ga0105248_10779379 3300009177 Bacteria 1079
42 Ga0105248_10856527 3300009177 Bacteria 1026
43 Ga0105248_11165128 3300009177 Bacteria 871
44 Ga0105248_11764730 3300009177 Bacteria 702
45 Ga0105249_10313345 3300009553 Bacteria 1578
46 Ga0105246_10188763 3300011119 Bacteria 1593
47 Ga0157369_10059481 3300013105 Bacteria 4120
48 Ga0163162_10666922 3300013306 Bacteria 1163
49 Ga0157372_10592978 3300013307 Bacteria 1292
50 Ga0157375_10604607 3300013308 Bacteria 1255
51 Ga0163163_10033901 3300014325 Bacteria 4942
52 Ga0157380_11333232 3300014326 Bacteria 766
53 Ga0157376_10747884 3300014969 Bacteria 986
54 Ga0163161_10212652 3300017792 Bacteria 1494
55 Ga0197907_10556039 3300020069 Bacteria 1000
56 Ga0206356_10515213 3300020070 Bacteria 1104
57 Ga0206349_1601116 3300020075 Bacteria 977
58 Ga0206349_1663626 3300020075 Bacteria 1648
59 Ga0206351_10264578 3300020077 Bacteria 866
60 Ga0206351_10701786 3300020077 Bacteria 981
61 Ga0206352_10217877 3300020078 Bacteria 1165
62 Ga0206352_10285200 3300020078 Bacteria 1011
63 Ga0206352_11143836 3300020078 Bacteria 942
64 Ga0206352_11349336 3300020078 Bacteria 1034
65 Ga0206354_10803997 3300020081 Bacteria 1656
66 Ga0206354_11459662 3300020081 Bacteria 870
67 Ga0206354_11613666 3300020081 Bacteria 1015
68 Ga0206353_10604631 3300020082 Bacteria 1165
69 Ga0206353_10766874 3300020082 Bacteria 1189
70 Ga0206353_11299380 3300020082 Bacteria 1144
71 Ga0154015_1526569 3300020610 Bacteria 1460
72 Ga0224712_10288801 3300022467 Bacteria 765
73 Ga0207656_10144612 3300025321 Bacteria 1122
74 Ga0207647_10040561 3300025904 Bacteria 2931
75 Ga0207643_10098825 3300025908 Bacteria 1709
76 Ga0207643_10143786 3300025908 Bacteria 1426
77 Ga0207705_10525318 3300025909 Bacteria 920
78 Ga0207660_10128772 3300025917 Bacteria 1925
79 Ga0207660_10194383 3300025917 Bacteria 1582
80 Ga0207657_10329259 3300025919 Bacteria 1207
81 Ga0207652_10050205 3300025921 Bacteria 3573
82 Ga0207646_10316074 3300025922 Bacteria 1411
83 Ga0207659_10541042 3300025926 Bacteria 989
84 Ga0207670_10439251 3300025936 Bacteria 1050
85 Ga0207669_10328122 3300025937 Bacteria 1174
86 Ga0207669_10473085 3300025937 Bacteria 997
87 Ga0207691_10344110 3300025940 Bacteria 1276
88 Ga0207711_10561775 3300025941 Bacteria 1064
89 Ga0207661_10627806 3300025944 Bacteria 987
90 Ga0207667_10733498 3300025949 Bacteria 988
91 Ga0207640_10465657 3300025981 Bacteria 1045
92 Ga0207658_10014016 3300025986 Bacteria 5487
93 Ga0207678_10149100 3300026067 Bacteria 1997
94 Ga0207683_10084660 3300026121 Bacteria 2819
95 Ga0207698_10242594 3300026142 Bacteria 1643
96 Ga0316183_1171407 3300030742 Bacteria 1470
97 Ga0316182_1245656 3300030745 Bacteria 1298
98 Ga0316575_10000071 3300031665 Bacteria 24774
99 Ga0307413_10560434 3300031824 Bacteria 928
100 Ga0307410_10005277 3300031852 Bacteria 6815
101 Ga0307407_10377340 3300031903 Bacteria 1011
102 Ga0307407_10455966 3300031903 Bacteria 929
103 Ga0307409_100794361 3300031995 Bacteria 953
104 Ga0307414_10025601 3300032004 Bacteria 3783
105 Ga0307411_10516389 3300032005 Bacteria 1013
106 Ga0307415_100516526 3300032126 Bacteria 1047
107 Ga0395900_0052343 3300037418 Bacteria 4203
108 Ga0395898_0272271 3300037466 Bacteria 1615
109 Ga0436364_0726734 3300037853 Bacteria 1670
110 Ga0439466_0055117 3300041411 Bacteria 1293
111 Ga0439465_0068538 3300041413 Bacteria 1186
112 Ga0451790_46661 3300041444 Bacteria 908
113 Ga0451791_0694271 3300041451 Bacteria 1344
114 Ga0451797_1341735 3300041453 Bacteria 2324
115 Ga0451833_0930445 3300041491 Bacteria 1017
116 Ga0451837_1344754 3300041494 Bacteria 1306
117 Ga0451843_0274892 3300041509 Bacteria 888
118 Ga0439442_027666 3300042002 Bacteria 1182
119 Ga0466965_0003249 3300044683 Bacteria 7109
120 Ga0466966_0578027 3300044684 Bacteria 676
121 Ga0466961_0003545 3300044693 Bacteria 9731
122 Ga0466970_0000027 3300044765 Bacteria 56103
123 Ga0466967_0252441 3300045976 Bacteria 1685
124 Ga0495641_0110040 3300046461 Bacteria 1229
125 Ga0495653_0232608 3300046463 Bacteria 1233
126 Ga0495596_0066453 3300046500 Bacteria 1402
127 Ga0495643_0242985 3300046522 Bacteria 844
128 Ga0495587_0297046 3300046536 Bacteria 904
129 Ga0495645_0076192 3300046543 Bacteria 2414
130 Ga0495657_0116128 3300046675 Bacteria 1690
131 Ga0495658_0091173 3300046683 Bacteria 1805
132 Ga0495658_0263656 3300046683 Bacteria 1085
133 Ga0495649_0129509 3300046694 Bacteria 1332
134 Ga0495600_0206717 3300046809 Bacteria 1259
135 Ga0496100_0367272 3300048903 Bacteria 1090
136 Ga0496101_0062907 3300048904 Bacteria 2700
137 Ga0496102_0153673 3300048905 Bacteria 2163
138 Ga0496102_0157301 3300048905 Bacteria 2136
139 Ga0496103_0111207 3300048906 Bacteria 1740
140 Ga0496104_0021580 3300048907 Bacteria 5913
141 Ga0496104_0193062 3300048907 Bacteria 1948
142 Ga0496105_0004859 3300048908 Bacteria 10146
143 Ga0496106_0046428 3300048909 Bacteria 3265
144 Ga0496107_0094546 3300048910 Bacteria 2186
145 Ga0496108_0092759 3300048911 Bacteria 2568
146 Ga0496108_0225990 3300048911 Bacteria 1627
147 Ga0496108_0310269 3300048911 Bacteria 1374
148 Ga0496108_0888660 3300048911 Bacteria 765
149 Ga0496109_0180923 3300048912 Bacteria 1980
150 Ga0496109_0560593 3300048912 Bacteria 1077
151 Ga0496109_0618537 3300048912 Bacteria 1019
152 Ga0496110_0156830 3300048913 Bacteria 2062
153 Ga0496110_0438637 3300048913 Bacteria 1190
154 Ga0496111_0559931 3300048914 Bacteria 839
155 Ga0496113_0535814 3300048916 Bacteria 939
156 Ga0496114_0035936 3300048917 Bacteria 4093
157 Ga0496114_0245734 3300048917 Bacteria 1574
158 Ga0496115_0070187 3300048918 Bacteria 2839
159 Ga0496125_0089226 3300048928 Bacteria 2320
160 Ga0501306_029862 3300049127 Bacteria 805
161 Ga0501308_000526 3300049128 Bacteria 2538
162 Ga0501309_000629 3300049129 Bacteria 2997
163 Ga0501309_032204 3300049129 Bacteria 777
164 Ga0501310_001033 3300049130 Bacteria 2501
165 Ga0501304_000571 3300049160 Bacteria 1990
166 Ga0501304_006644 3300049160 Bacteria 937
167 Ga0501305_000663 3300049161 Bacteria 2947
168 Ga0501307_000373 3300049162 Bacteria 2914
169 Ga0501307_021900 3300049162 Bacteria 837
170 Ga0501311_001943 3300049527 Bacteria 1903
171 Ga0501311_005640 3300049527 Bacteria 1380
172 Ga0501312_002307 3300049528 Bacteria 2046
173 Ga0501312_007470 3300049528 Bacteria 1393
174 Ga0501312_013067 3300049528 Bacteria 1150
175 Ga0501313_001672 3300049529 Bacteria 1991
176 Ga0501313_022677 3300049529 Bacteria 784
177 Ga0501314_001631 3300049530 Bacteria 1646
178 Ga0501316_000363 3300049532 Bacteria 3003
179 Ga0501316_028541 3300049532 Bacteria 737
180 Ga0501317_000335 3300049533 Bacteria 3116
181 Ga0501317_029333 3300049533 Bacteria 790
182 Ga0501318_000300 3300049534 Bacteria 2889
183 Ga0501319_001087 3300049535 Bacteria 1501
184 Ga0501320_000323 3300049536 Bacteria 2649
185 Ga0501320_027233 3300049536 Bacteria 694
186 Ga0501322_001238 3300049538 Bacteria 1403
187 Ga0501323_003361 3300049539 Bacteria 1632
188 Ga0501324_000204 3300049540 Bacteria 2768
189 Ga0501325_002288 3300049541 Bacteria 1295
190 Ga0501034_0396513 3300049571 Bacteria 1303
191 Ga0501038_0556703 3300049574 Bacteria 871
192 Ga0501040_0261307 3300049576 Bacteria 1235
193 Ga0501048_0419354 3300049582 Bacteria 957
194 Ga0501067_0029297 3300049583 Bacteria 3051
195 Ga0501068_0121363 3300049584 Bacteria 1629
196 Ga0501069_0021639 3300049585 Bacteria 3493
197 Ga0501069_0040013 3300049585 Bacteria 2591
198 Ga0501071_0071455 3300049587 Bacteria 2530
199 Ga0501076_0126746 3300049592 Bacteria 2069
200 Ga0501076_0479158 3300049592 Bacteria 1025
201 Ga0501202_050856 3300049652 Bacteria 918
202 Ga0501080_0479681 3300049742 Bacteria 1113
203 Ga0501035_0565118 3300049822 Bacteria 930
204 Ga0501045_0498308 3300049824 Bacteria 905
205 nmdc:mga0yw44_34001_c1 3300050492 Bacteria 2984
206 Ga0495595_0054876 3300053084 Bacteria 1853
207 Ga0495595_0071212 3300053084 Bacteria 1644
208 Ga0587070_016309 3300059491 Bacteria 1188
209 Ga0587070_036387 3300059491 Bacteria 920
210 Ga0587085_012360 3300059506 Bacteria 1169
211 Ga0587098_002654 3300059604 Bacteria 1532
212 Ga0587098_003718 3300059604 Bacteria 1394
213 Ga0587125_013130 3300059607 Bacteria 892
214 Ga0587128_004675 3300059630 Bacteria 1603
215 Ga0587130_002206 3300059631 Bacteria 1551
216 Ga0587130_002660 3300059631 Bacteria 1454
217 Ga0587068_004833 3300059641 Bacteria 1805
218 Ga0587068_011116 3300059641 Bacteria 1353
219 Ga0587076_005800 3300059645 Bacteria 1616
220 Ga0587102_004969 3300059649 Bacteria 1156
221 Ga0587118_02766 3300059657 Bacteria 1153
222 Ga0587119_003009 3300059658 Bacteria 1566
223 Ga0466962_0086564 3300061719 Bacteria 1500
224 Ga0530510_0526792 3300061734 Bacteria 896

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044684 Ga0466966_0578027 Ga0466966_0578027_64_666 166
2 3300049533 Ga0501317_029333 Ga0501317_029333_205_774 167
3 3300059631 Ga0587130_002660 Ga0587130_002660_30_689 177
4 3300048907 Ga0496104_0193062 Ga0496104_0193062_1263_1922 178
5 3300059491 Ga0587070_036387 Ga0587070_036387_109_768 178
6 3300025986 Ga0207658_10014016 Ga0207658_100140167 179
7 3300048911 Ga0496108_0888660 Ga0496108_0888660_13_636 180
8 3300049536 Ga0501320_027233 Ga0501320_027233_14_625 180
9 3300049127 Ga0501306_029862 Ga0501306_029862_123_788 183
10 3300005842 Ga0068858_100725409 Ga0068858_1007254091 184
11 3300049584 Ga0501068_0121363 Ga0501068_0121363_357_1028 184
12 3300044765 Ga0466970_0000027 Ga0466970_0000027_5012_5671 185
13 3300049541 Ga0501325_002288 Ga0501325_002288_596_1276 185
14 3300037853 Ga0436364_0726734 Ga0436364_0726734_140_808 186
15 3300045976 Ga0466967_0252441 Ga0466967_0252441_336_1007 188
16 3300061719 Ga0466962_0086564 Ga0466962_0086564_244_915 188
17 3300031665 Ga0316575_10000071 Ga0316575_100000718 189
18 3300009177 Ga0105248_11165128 Ga0105248_111651282 190
19 iso_pu_bacteria 2643221576 2643890026 190
20 iso_pu_bacteria 2643221590 2643959082 190
21 iso_pu_bacteria 2643221604 2644033682 190
22 iso_pu_bacteria 2690315906 2691514824 190
23 iso_pu_bacteria 2775506735 2775654835 190
24 iso_pu_bacteria 2808606357 2808827934 190
25 iso_pu_bacteria 2808606360 2808853291 190
26 iso_pu_bacteria 2808606366 2808878211 190
27 iso_pu_bacteria 2808606370 2808892187 190
28 iso_pu_bacteria 2808606371 2808897286 190
29 iso_pu_bacteria 2811994871 2812320299 190
30 iso_pu_bacteria 2857740372 2857741087 190
31 iso_pu_bacteria 2904497146 2904500321 190
32 iso_pu_bacteria 2904776348 2904776884 190
33 iso_pu_bacteria 2910809715 2910813216 190
34 iso_pu_bacteria 2919034639 2919036422 190
35 iso_pu_bacteria 2919059106 2919059564 190
36 iso_pu_bacteria 2919391150 2919392859 190
37 iso_pu_bacteria 2919538618 2919540881 190
38 iso_pu_bacteria 2932426870 2932427016 190
39 iso_pu_bacteria 2933418574 2933419645 190
40 iso_pu_bacteria 2939598168 2939598906 190
41 iso_pu_bacteria 2939647034 2939649954 190
42 iso_pu_bacteria 2939674588 2939677404 190
43 iso_pu_bacteria 2945916053 2945918047 190
44 iso_pu_bacteria 2945920336 2945921666 190
45 iso_pu_bacteria 2945941187 2945942118 190
46 iso_pu_bacteria 2945956166 2945960098 190
47 iso_pu_bacteria 2946024296 2946026690 190
48 iso_pu_bacteria 2946037020 2946038100 190
49 iso_pu_bacteria 2946059875 2946061888 190
50 iso_pu_bacteria 2953998280 2953999376 190
51 iso_pu_bacteria 2974302888 2974306086 190
52 iso_pu_bacteria 2995726249 2995728351 190
53 iso_pu_bacteria 8054107350 8054108533 190
54 iso_pu_bacteria 8055037949 8055039011 190
55 3300025981 Ga0207640_10465657 Ga0207640_104656572 191
56 3300048911 Ga0496108_0225990 Ga0496108_0225990_973_1614 191
57 iso_pu_bacteria 2585428094 2587863658 191
58 iso_pu_bacteria 2738541272 2738693802 191
59 iso_pu_bacteria 2738543027 2739327006 191
60 iso_pu_bacteria 2751185788 2753303698 191
61 iso_pu_bacteria 2758568621 2760621455 191
62 iso_pu_bacteria 2835188231 2835189441 191
63 iso_pu_bacteria 2928104781 2928105469 191
64 iso_pu_bacteria 8056579771 8056583172 191
65 3300004800 Ga0058861_10134196 Ga0058861_101341961 192
66 3300020075 Ga0206349_1601116 Ga0206349_16011162 192
67 3300031824 Ga0307413_10560434 Ga0307413_105604341 192
68 3300031903 Ga0307407_10377340 Ga0307407_103773402 192
69 3300041413 Ga0439465_0068538 Ga0439465_0068538_172_837 192
70 3300041494 Ga0451837_1344754 Ga0451837_1344754_59_718 192
71 3300059604 Ga0587098_003718 Ga0587098_003718_620_1285 192
72 3300059630 Ga0587128_004675 Ga0587128_004675_324_989 192
73 iso_pu_bacteria 2643221649 2644277791 192
74 3300004785 Ga0058858_1041535 Ga0058858_10415351 193
75 3300004798 Ga0058859_10074740 Ga0058859_100747401 193
76 3300004801 Ga0058860_10121489 Ga0058860_101214891 193
77 3300005356 Ga0070674_100145264 Ga0070674_1001452642 193
78 3300006038 Ga0075365_10194132 Ga0075365_101941322 193
79 3300020078 Ga0206352_10285200 Ga0206352_102852002 193
80 3300025321 Ga0207656_10144612 Ga0207656_101446121 193
81 3300025937 Ga0207669_10328122 Ga0207669_103281222 193
82 3300031852 Ga0307410_10005277 Ga0307410_1000527714 193
83 3300032004 Ga0307414_10025601 Ga0307414_100256013 193
84 3300032005 Ga0307411_10516389 Ga0307411_105163892 193
85 3300041444 Ga0451790_46661 Ga0451790_46661_43_750 193
86 3300041451 Ga0451791_0694271 Ga0451791_0694271_606_1277 193
87 3300041453 Ga0451797_1341735 Ga0451797_1341735_225_890 193
88 3300041491 Ga0451833_0930445 Ga0451833_0930445_152_817 193
89 3300041509 Ga0451843_0274892 Ga0451843_0274892_57_722 193
90 3300042002 Ga0439442_027666 Ga0439442_027666_223_900 193
91 3300046543 Ga0495645_0076192 Ga0495645_0076192_189_848 193
92 3300048928 Ga0496125_0089226 Ga0496125_0089226_843_1493 193
93 3300049128 Ga0501308_000526 Ga0501308_000526_1274_1942 193
94 3300049129 Ga0501309_000629 Ga0501309_000629_1675_2343 193
95 3300049129 Ga0501309_032204 Ga0501309_032204_18_689 193
96 3300049130 Ga0501310_001033 Ga0501310_001033_595_1263 193
97 3300049160 Ga0501304_000571 Ga0501304_000571_731_1399 193
98 3300049161 Ga0501305_000663 Ga0501305_000663_595_1263 193
99 3300049162 Ga0501307_000373 Ga0501307_000373_1650_2318 193
100 3300049527 Ga0501311_001943 Ga0501311_001943_595_1263 193
101 3300049528 Ga0501312_002307 Ga0501312_002307_812_1480 193
102 3300049528 Ga0501312_007470 Ga0501312_007470_628_1293 193
103 3300049529 Ga0501313_001672 Ga0501313_001672_727_1395 193
104 3300049530 Ga0501314_001631 Ga0501314_001631_554_1222 193
105 3300049532 Ga0501316_000363 Ga0501316_000363_595_1263 193
106 3300049533 Ga0501317_000335 Ga0501317_000335_566_1234 193
107 3300049534 Ga0501318_000300 Ga0501318_000300_355_1023 193
108 3300049535 Ga0501319_001087 Ga0501319_001087_392_1060 193
109 3300049536 Ga0501320_000323 Ga0501320_000323_424_1092 193
110 3300049538 Ga0501322_001238 Ga0501322_001238_561_1229 193
111 3300049539 Ga0501323_003361 Ga0501323_003361_368_1036 193
112 3300049540 Ga0501324_000204 Ga0501324_000204_1429_2097 193
113 3300049652 Ga0501202_050856 Ga0501202_050856_159_824 193
114 iso_pu_bacteria 2643221694 2644525194 193
115 iso_pu_bacteria 2643221722 2644669282 193
116 iso_pu_bacteria 2811994880 2812364359 193
117 iso_pu_bacteria 2884994152 2884996455 193
118 3300005288 Ga0065714_10012462 Ga0065714_100124623 194
119 3300005468 Ga0070707_100053894 Ga0070707_1000538943 194
120 3300005471 Ga0070698_100003093 Ga0070698_1000030932 194
121 3300005985 Ga0081539_10001524 Ga0081539_1000152426 194
122 3300013105 Ga0157369_10059481 Ga0157369_100594812 194
123 3300020069 Ga0197907_10556039 Ga0197907_105560392 194
124 3300020075 Ga0206349_1663626 Ga0206349_16636262 194
125 3300020077 Ga0206351_10701786 Ga0206351_107017862 194
126 3300020078 Ga0206352_11349336 Ga0206352_113493362 194
127 3300020082 Ga0206353_10766874 Ga0206353_107668742 194
128 3300022467 Ga0224712_10288801 Ga0224712_102888011 194
129 3300025922 Ga0207646_10316074 Ga0207646_103160742 194
130 3300031903 Ga0307407_10455966 Ga0307407_104559662 194
131 3300044683 Ga0466965_0003249 Ga0466965_0003249_1919_2572 194
132 3300046683 Ga0495658_0263656 Ga0495658_0263656_192_860 194
133 3300049532 Ga0501316_028541 Ga0501316_028541_77_727 194
134 3300049571 Ga0501034_0396513 Ga0501034_0396513_365_1027 194
135 iso_pu_bacteria 2643221613 2644082389 194
136 iso_pu_bacteria 2643221721 2644666988 194
137 iso_pu_bacteria 2739367898 2740168061 194
138 iso_pu_bacteria 2839986021 2839986171 194
139 iso_pu_bacteria 2887443736 2887444552 194
140 iso_pu_bacteria 2932431166 2932432189 194
141 iso_pu_bacteria 2935890801 2935892118 194
142 3300004785 Ga0058858_1039255 Ga0058858_10392552 195
143 3300005327 Ga0070658_10006748 Ga0070658_1000674818 195
144 3300005327 Ga0070658_10507997 Ga0070658_105079972 195
145 3300005339 Ga0070660_100086807 Ga0070660_1000868074 195
146 3300005339 Ga0070660_100102224 Ga0070660_1001022242 195
147 3300005530 Ga0070679_100109002 Ga0070679_1001090022 195
148 3300020081 Ga0206354_10803997 Ga0206354_108039973 195
149 3300020081 Ga0206354_11459662 Ga0206354_114596622 195
150 3300025917 Ga0207660_10128772 Ga0207660_101287723 195
151 3300025949 Ga0207667_10733498 Ga0207667_107334981 195
152 3300037418 Ga0395900_0052343 Ga0395900_0052343_1668_2351 195
153 3300037466 Ga0395898_0272271 Ga0395898_0272271_617_1300 195
154 3300044693 Ga0466961_0003545 Ga0466961_0003545_4894_5583 195
155 3300059491 Ga0587070_016309 Ga0587070_016309_278_940 195
156 3300059641 Ga0587068_004833 Ga0587068_004833_613_1275 195
157 iso_pu_bacteria 2643221641 2644229137 195
158 3300004785 Ga0058858_1029911 Ga0058858_10299112 196
159 3300004801 Ga0058860_10137925 Ga0058860_101379252 196
160 3300005329 Ga0070683_100755781 Ga0070683_1007557812 196
161 3300005345 Ga0070692_10027606 Ga0070692_100276064 196
162 3300005354 Ga0070675_100218422 Ga0070675_1002184222 196
163 3300005356 Ga0070674_100045759 Ga0070674_1000457593 196
164 3300005459 Ga0068867_100179496 Ga0068867_1001794963 196
165 3300005466 Ga0070685_10245993 Ga0070685_102459932 196
166 3300005548 Ga0070665_100913310 Ga0070665_1009133102 196
167 3300005834 Ga0068851_10044668 Ga0068851_100446682 196
168 3300006237 Ga0097621_100332199 Ga0097621_1003321993 196
169 3300006881 Ga0068865_100106360 Ga0068865_1001063602 196
170 3300009098 Ga0105245_10619151 Ga0105245_106191512 196
171 3300009148 Ga0105243_10401489 Ga0105243_104014892 196
172 3300009177 Ga0105248_10779379 Ga0105248_107793792 196
173 3300009177 Ga0105248_11764730 Ga0105248_117647301 196
174 3300009553 Ga0105249_10313345 Ga0105249_103133452 196
175 3300011119 Ga0105246_10188763 Ga0105246_101887632 196
176 3300013306 Ga0163162_10666922 Ga0163162_106669222 196
177 3300013307 Ga0157372_10592978 Ga0157372_105929782 196
178 3300013308 Ga0157375_10604607 Ga0157375_106046072 196
179 3300014325 Ga0163163_10033901 Ga0163163_100339015 196
180 3300014326 Ga0157380_11333232 Ga0157380_113332321 196
181 3300017792 Ga0163161_10212652 Ga0163161_102126522 196
182 3300020070 Ga0206356_10515213 Ga0206356_105152132 196
183 3300020078 Ga0206352_10217877 Ga0206352_102178772 196
184 3300020078 Ga0206352_11143836 Ga0206352_111438361 196
185 3300020082 Ga0206353_10604631 Ga0206353_106046312 196
186 3300025908 Ga0207643_10098825 Ga0207643_100988252 196
187 3300025909 Ga0207705_10525318 Ga0207705_105253182 196
188 3300025926 Ga0207659_10541042 Ga0207659_105410422 196
189 3300025936 Ga0207670_10439251 Ga0207670_104392511 196
190 3300025937 Ga0207669_10473085 Ga0207669_104730852 196
191 3300025940 Ga0207691_10344110 Ga0207691_103441102 196
192 3300025944 Ga0207661_10627806 Ga0207661_106278062 196
193 3300026067 Ga0207678_10149100 Ga0207678_101491002 196
194 3300026121 Ga0207683_10084660 Ga0207683_100846604 196
195 3300030745 Ga0316182_1245656 Ga0316182_12456562 196
196 3300031995 Ga0307409_100794361 Ga0307409_1007943611 196
197 3300048912 Ga0496109_0180923 Ga0496109_0180923_231_902 196
198 3300049162 Ga0501307_021900 Ga0501307_021900_72_743 196
199 3300049527 Ga0501311_005640 Ga0501311_005640_617_1288 196
200 3300049529 Ga0501313_022677 Ga0501313_022677_70_729 196
201 3300049574 Ga0501038_0556703 Ga0501038_0556703_78_743 196
202 3300049592 Ga0501076_0126746 Ga0501076_0126746_371_1036 196
203 3300049592 Ga0501076_0479158 Ga0501076_0479158_314_976 196
204 3300049824 Ga0501045_0498308 Ga0501045_0498308_190_855 196
205 3300053084 Ga0495595_0071212 Ga0495595_0071212_447_1106 196
206 3300059604 Ga0587098_002654 Ga0587098_002654_720_1394 196
207 3300059607 Ga0587125_013130 Ga0587125_013130_159_824 196
208 3300059631 Ga0587130_002206 Ga0587130_002206_162_827 196
209 3300059649 Ga0587102_004969 Ga0587102_004969_274_930 196
210 3300059657 Ga0587118_02766 Ga0587118_02766_68_739 196
211 3300061734 Ga0530510_0526792 Ga0530510_0526792_212_877 196
212 iso_pu_bacteria 8054609563 8054613738 196
213 3300004800 Ga0058861_10094103 Ga0058861_100941031 197
214 3300005364 Ga0070673_100826417 Ga0070673_1008264171 197
215 3300005616 Ga0068852_100258004 Ga0068852_1002580043 197
216 3300005840 Ga0068870_10431362 Ga0068870_104313621 197
217 3300006038 Ga0075365_10224109 Ga0075365_102241092 197
218 3300009098 Ga0105245_10888696 Ga0105245_108886962 197
219 3300014969 Ga0157376_10747884 Ga0157376_107478842 197
220 3300020077 Ga0206351_10264578 Ga0206351_102645781 197
221 3300025941 Ga0207711_10561775 Ga0207711_105617752 197
222 3300026142 Ga0207698_10242594 Ga0207698_102425942 197
223 3300030742 Ga0316183_1171407 Ga0316183_11714073 197
224 3300032126 Ga0307415_100516526 Ga0307415_1005165262 197
225 3300041411 Ga0439466_0055117 Ga0439466_0055117_272_949 197
226 3300046461 Ga0495641_0110040 Ga0495641_0110040_196_855 197
227 3300046463 Ga0495653_0232608 Ga0495653_0232608_420_1079 197
228 3300046500 Ga0495596_0066453 Ga0495596_0066453_486_1154 197
229 3300046522 Ga0495643_0242985 Ga0495643_0242985_100_768 197
230 3300046536 Ga0495587_0297046 Ga0495587_0297046_122_781 197
231 3300046694 Ga0495649_0129509 Ga0495649_0129509_293_961 197
232 3300048903 Ga0496100_0367272 Ga0496100_0367272_340_999 197
233 3300048911 Ga0496108_0092759 Ga0496108_0092759_175_837 197
234 3300048913 Ga0496110_0438637 Ga0496110_0438637_194_862 197
235 3300048914 Ga0496111_0559931 Ga0496111_0559931_12_671 197
236 3300048917 Ga0496114_0245734 Ga0496114_0245734_590_1258 197
237 3300049160 Ga0501304_006644 Ga0501304_006644_79_738 197
238 3300049528 Ga0501312_013067 Ga0501312_013067_243_923 197
239 3300049576 Ga0501040_0261307 Ga0501040_0261307_187_852 197
240 3300049583 Ga0501067_0029297 Ga0501067_0029297_2027_2695 197
241 3300049585 Ga0501069_0040013 Ga0501069_0040013_696_1361 197
242 3300049742 Ga0501080_0479681 Ga0501080_0479681_203_880 197
243 3300050492 nmdc:mga0yw44_34001_c1 nmdc:mga0yw44_34001_c1_1521_2189 197
244 3300059506 Ga0587085_012360 Ga0587085_012360_76_735 197
245 3300059641 Ga0587068_011116 Ga0587068_011116_307_966 197
246 3300059658 Ga0587119_003009 Ga0587119_003009_619_1296 197
247 3300009177 Ga0105248_10856527 Ga0105248_108565272 198
248 3300020610 Ga0154015_1526569 Ga0154015_15265692 198
249 3300025908 Ga0207643_10143786 Ga0207643_101437862 198
250 3300046675 Ga0495657_0116128 Ga0495657_0116128_854_1516 198
251 3300046683 Ga0495658_0091173 Ga0495658_0091173_975_1637 198
252 3300046809 Ga0495600_0206717 Ga0495600_0206717_365_1027 198
253 3300048904 Ga0496101_0062907 Ga0496101_0062907_570_1232 198
254 3300048905 Ga0496102_0153673 Ga0496102_0153673_1348_2010 198
255 3300048905 Ga0496102_0157301 Ga0496102_0157301_572_1234 198
256 3300048906 Ga0496103_0111207 Ga0496103_0111207_705_1367 198
257 3300048907 Ga0496104_0021580 Ga0496104_0021580_4288_4950 198
258 3300048908 Ga0496105_0004859 Ga0496105_0004859_2837_3499 198
259 3300048909 Ga0496106_0046428 Ga0496106_0046428_857_1519 198
260 3300048910 Ga0496107_0094546 Ga0496107_0094546_1128_1790 198
261 3300048911 Ga0496108_0310269 Ga0496108_0310269_366_1028 198
262 3300048912 Ga0496109_0560593 Ga0496109_0560593_75_737 198
263 3300048912 Ga0496109_0618537 Ga0496109_0618537_86_748 198
264 3300048913 Ga0496110_0156830 Ga0496110_0156830_1012_1674 198
265 3300048916 Ga0496113_0535814 Ga0496113_0535814_238_900 198
266 3300048917 Ga0496114_0035936 Ga0496114_0035936_2453_3115 198
267 3300048918 Ga0496115_0070187 Ga0496115_0070187_694_1356 198
268 3300049582 Ga0501048_0419354 Ga0501048_0419354_19_696 198
269 3300049587 Ga0501071_0071455 Ga0501071_0071455_319_996 198
270 3300049822 Ga0501035_0565118 Ga0501035_0565118_188_865 198
271 3300053084 Ga0495595_0054876 Ga0495595_0054876_961_1623 198
272 3300059645 Ga0587076_005800 Ga0587076_005800_796_1461 198
273 3300002067 JGI24735J21928_10016966 JGI24735J21928_100169662 202
274 3300005339 Ga0070660_100295401 Ga0070660_1002954012 202
275 3300005530 Ga0070679_100087466 Ga0070679_1000874664 202
276 3300020081 Ga0206354_11613666 Ga0206354_116136662 202
277 3300020082 Ga0206353_11299380 Ga0206353_112993802 202
278 3300025904 Ga0207647_10040561 Ga0207647_100405614 202
279 3300025917 Ga0207660_10194383 Ga0207660_101943832 202
280 3300025919 Ga0207657_10329259 Ga0207657_103292591 202
281 3300025921 Ga0207652_10050205 Ga0207652_100502052 202
282 3300049585 Ga0501069_0021639 Ga0501069_0021639_1902_2576 202

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00297

Ribosomal_L3

Ribosomal protein L3

80

189

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
8c97-assembly1.cif.gz_D cryo-em captures early ribosome assembly in action 0.9307 9 192
8c93-assembly1.cif.gz_D cryo-em captures early ribosome assembly in action 0.9208 8 192
6pvk-assembly1.cif.gz_D bacterial 45srbga ribosomal particle class a 0.9199 8 192
6pvk-assembly1.cif.gz_D bacterial 45srbga ribosomal particle class a 0.9146 8 192
6ppf-assembly1.cif.gz_D bacterial 45srbga ribosomal particle class b 0.91 8 192
ID Description Score Start End Superfamily
1vw3C01 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9692 9 190 2.40.30.10
af_Q9SKX4_88_148_3.30.160.810 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.8882 39 98 3.30.160.810
af_Q54I61_95_160_3.30.160.810 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.8788 38 98 3.30.160.810
af_P9WH87_35_101_3.30.160.810 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.8718 39 102 3.30.160.810
af_Q9LIT4_106_169_3.30.160.810 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.8645 39 102 3.30.160.810
ID Description Score Start End GO Terms
AF-A0A564VPD5-F1-model_v4 deleted 0.9582 5 107
AF-A0A087B7P6-F1-model_v4 deleted 0.9556 6 107
AF-A0A2V6DPT5-F1-model_v4 50S ribosomal protein L3 0.9516 8 89 GO:0003735
GO:0006412
GO:0022625
AF-A0A845Y1H4-F1-model_v4 50S ribosomal protein L3 0.9339 8 108 GO:0003735
GO:0006412
GO:0022625
AF-A0A074TMK2-F1-model_v4 deleted 0.9302 18 102

Feature Viewer

pLDDT pTM Quality
76.46 0.71 High
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Predicted Structure (AlphaFold2)

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