|
Taxon Oid |
3300020075
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA |
| Genome Name Sample Name |
Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2) (version 2) |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300020075 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Ncbi Species |
Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.15.1 |
| Img Submission Id |
146430 |
|
Gold Analysis Project Id
|
Ga0206349
|
| Gold Analysis Project Type |
Metatranscriptome Analysis |
|
Gold Sequencing Project Id
|
Gp0175829
|
|
Gold Study Id
|
Gs0090294
|
| Add Date |
08/19/2017 00:00:00 |
| Assembly Method |
MEGAHIT v. 1.0.6 |
| Has Coverage |
False |
| Public Release Date |
01/31/2019 00:00:00 |
| Submission Type |
Reanalysis |
| In File |
Yes |
| Submitter Name |
Tijana Glavina del Rio |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
James Tiedje |
| Contact Email |
[email protected] |
| Contact Name |
James Tiedje |
| Award Doi |
10.46936/10.25585/60000745 |
| Funding Program |
BRC-GLBRC |
| Funding Year |
2013 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA465144 |
| Ncbi Biosample Accession |
SAMN09091660 |
| Sequencing Method |
Illumina HiSeq 2500-1TB |
| Sequencing Strategy |
Metatranscriptome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Elevation In Meters |
288.000000 |
| Geographic Location |
USA: Michigan |
| Habitat |
corn rhizosphere |
| Isolation |
Rhizosphere soil |
| Isolation Country |
8855 |
| Latitude |
42.3948 |
| Longitude |
-85.3738 |
| Sample Collection Date |
2016/8/4 |
| Host Name |
Zea mays subsp. mays |
| Genome Size Assembled |
492487678 |
| Gene Count Assembled |
1106011 |