F383191

General Info

Members Datasets Scaffolds Average Seq Length
279 190 558 306

Family's Representative Sequence

Representative Sequence 3300037853|Ga0436364_0028532|Ga0436364_0028532_253_1269
Length 338
Sequence VACQFAAAVPQLRRDPDRDIGGALAAGRVAAASDEARVSDMPGTAVPAWGGAAVRDYVMILKPRVMSLVVFTGVVGLVVAPGHLHPFLAAVAVLCIAIGAGASGAINMWYDRDIDAVMRRTALRPLPAGRMMPGEALGFGVVLAVGSVAVMGLAVNWVAAELLALTIGFYIFVYTTWLKRRTPQNIVIGGAAGALPPLIGWAAVTGDIGWGAVALFAIIFFWTPPHFWALSLYRAGEYEAAGVPMLPVVAGARETRRQMLIYTLMLWPATAAPWLLGVAGPLYGIGAGGLSLAFTGTALRVWHDESERSARQMFTFSLLYLFLVFTLLLADRILGGAQ

Samples

Sample ID Description Type Environment
1 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
6 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
7 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
8 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
14 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
15 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
16 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
17 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
22 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
26 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
27 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
28 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
29 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
32 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
33 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
34 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
35 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
36 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
41 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
46 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
47 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
48 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
49 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
50 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
51 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
54 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
56 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
57 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
59 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
74 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
75 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
76 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
77 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
78 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
79 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
80 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
81 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
82 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
83 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
84 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
85 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
86 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
87 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
88 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
89 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
90 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
91 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
92 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
93 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
94 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
95 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
96 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
97 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
98 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
99 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
100 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
101 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
102 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
103 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
104 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
105 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
106 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
107 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
108 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
109 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
110 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
111 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
112 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
113 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
114 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
115 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
116 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
117 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
118 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
119 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
120 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
121 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
122 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
130 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
135 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
136 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
137 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
138 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
139 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
140 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
141 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
142 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
143 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
144 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
145 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
146 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
149 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
150 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
151 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
152 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
153 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
154 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
155 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
156 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
157 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
158 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
159 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
160 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
161 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
162 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
163 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
164 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
165 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
166 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
167 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
168 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
169 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
170 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
171 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
172 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
173 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
174 2511231221 Azospirillum lipoferum 4B Isolate Rhizosphere
175 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
176 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
177 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
178 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
179 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
180 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
181 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
182 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
183 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
184 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
185 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
186 2897803580 Azospirillum doebereinerae GSF71 Isolate Unclassified
187 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
188 643348555 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
189 8054002106 Azospirillum lipoferum 59b Isolate Unclassified
190 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.55
Metatranscriptomes 0.36
Isolates 6.09

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.83
Nodule 0
Rhizoplane 1.43
Rhizosphere 77.42
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0436364_0028532 3300037853 Bacteria 1315
2 JGI25151J46595_10000482 3300003187 Bacteria 37729
3 JGI25153J46596_10000145 3300003215 Bacteria 72113
4 JGI25153J46596_10000325 3300003215 Bacteria 34505
5 JGI25153J46596_10015132 3300003215 Bacteria 3163
6 rootH2_10052970 3300003320 Bacteria 7768
7 JGI25160J50197_1004017 3300003354 Bacteria 6422
8 Ga0055536_1006443 3300003781 Bacteria 5481
9 Ga0065165_1039274 3300005262 Bacteria 1419
10 Ga0065707_10204922 3300005295 Bacteria 1293
11 Ga0070670_100176146 3300005331 Bacteria 1856
12 Ga0070680_100002753 3300005336 Bacteria 13043
13 Ga0070674_100144859 3300005356 Bacteria 1787
14 Ga0070659_100038307 3300005366 Bacteria 3738
15 Ga0070709_10021870 3300005434 Bacteria 3732
16 Ga0070713_100079310 3300005436 Bacteria 2797
17 Ga0070713_100091415 3300005436 Bacteria 2618
18 Ga0070710_10082079 3300005437 Bacteria 1884
19 Ga0070711_100074831 3300005439 Bacteria 2396
20 Ga0070678_100044248 3300005456 Bacteria 3178
21 Ga0070681_10005977 3300005458 Bacteria 11789
22 Ga0070681_10032681 3300005458 Bacteria 5224
23 Ga0070681_10079327 3300005458 Bacteria 3239
24 Ga0070681_10131301 3300005458 Bacteria 2437
25 Ga0070681_10275866 3300005458 Bacteria 1592
26 Ga0070706_100129478 3300005467 Bacteria 2355
27 Ga0070706_100145622 3300005467 Bacteria 2212
28 Ga0070679_100000523 3300005530 Bacteria 32664
29 Ga0070679_100126658 3300005530 Bacteria 2536
30 Ga0070684_100082270 3300005535 Bacteria 2850
31 Ga0070684_100317919 3300005535 Bacteria 1430
32 Ga0070696_100035044 3300005546 Bacteria 3455
33 Ga0068855_100258197 3300005563 Bacteria 1942
34 Ga0068856_100476075 3300005614 Bacteria 1270
35 Ga0068864_100173428 3300005618 Bacteria 1968
36 Ga0068863_100593504 3300005841 Bacteria 1096
37 Ga0068862_100024902 3300005844 Bacteria 5022
38 Ga0081455_10037358 3300005937 Bacteria 4314
39 Ga0081538_10007212 3300005981 Bacteria 9652
40 Ga0081538_10011983 3300005981 Bacteria 6986
41 Ga0081539_10023348 3300005985 Bacteria 4053
42 Ga0070717_10163480 3300006028 Bacteria 1932
43 Ga0070716_100375873 3300006173 Bacteria 1014
44 Ga0075428_100234997 3300006844 Bacteria 1978
45 Ga0075434_100493228 3300006871 Bacteria 1246
46 Ga0075434_100555291 3300006871 Bacteria 1168
47 Ga0068865_100118918 3300006881 Bacteria 1961
48 Ga0075436_100324331 3300006914 Bacteria 1106
49 Ga0105240_10045735 3300009093 Bacteria 5551
50 Ga0111539_10011402 3300009094 Bacteria 11157
51 Ga0111539_10194696 3300009094 Bacteria 2364
52 Ga0111539_10502899 3300009094 Bacteria 1412
53 Ga0114129_10192084 3300009147 Bacteria 2772
54 Ga0114129_10506859 3300009147 Bacteria 1575
55 Ga0105249_10093052 3300009553 Bacteria 2823
56 Ga0099796_10019880 3300010159 Bacteria 2043
57 Ga0157370_10005680 3300013104 Bacteria 13945
58 Ga0157370_10017762 3300013104 Bacteria 7169
59 Ga0157369_10092454 3300013105 Bacteria 3228
60 Ga0157374_10227503 3300013296 Bacteria 1832
61 Ga0163163_10713054 3300014325 Bacteria 1067
62 Ga0157380_10064513 3300014326 Bacteria 2940
63 Ga0157379_10093970 3300014968 Bacteria 2690
64 Ga0157379_10347103 3300014968 Bacteria 1358
65 Ga0213872_10000278 3300021361 Bacteria 43638
66 Ga0213875_10044743 3300021388 Bacteria 2079
67 Ga0213871_10001271 3300021441 Bacteria 4128
68 Ga0213871_10008069 3300021441 Bacteria 2305
69 Ga0209148_1000793 3300025254 Bacteria 23350
70 Ga0209455_1000395 3300025272 Bacteria 37687
71 Ga0209130_1000645 3300025284 Bacteria 32527
72 Ga0209676_1000197 3300025292 Bacteria 135043
73 Ga0209025_1000712 3300025294 Bacteria 56550
74 Ga0209758_1000060 3300025297 Bacteria 324326
75 Ga0209758_1008171 3300025297 Bacteria 6867
76 Ga0209758_1031058 3300025297 Bacteria 2199
77 Ga0209050_1005125 3300025298 Bacteria 8420
78 Ga0207426_1000046 3300025302 Bacteria 422271
79 Ga0207426_1034007 3300025302 Bacteria 1638
80 Ga0209257_1000749 3300025304 Bacteria 49070
81 Ga0207684_10188730 3300025910 Bacteria 1777
82 Ga0207707_10000753 3300025912 Bacteria 31898
83 Ga0207707_10115932 3300025912 Bacteria 2341
84 Ga0207707_10133314 3300025912 Bacteria 2173
85 Ga0207693_10252897 3300025915 Bacteria 1382
86 Ga0207663_10100316 3300025916 Bacteria 1943
87 Ga0207660_10027671 3300025917 Bacteria 3872
88 Ga0207652_10094533 3300025921 Bacteria 2632
89 Ga0207652_10113601 3300025921 Bacteria 2404
90 Ga0207652_10231530 3300025921 Bacteria 1665
91 Ga0207652_10350200 3300025921 Bacteria 1333
92 Ga0207690_10189601 3300025932 Bacteria 1554
93 Ga0207665_10067106 3300025939 Bacteria 2442
94 Ga0207661_10156446 3300025944 Bacteria 1975
95 Ga0207658_10060134 3300025986 Bacteria 2834
96 Ga0207702_10462517 3300026078 Bacteria 1232
97 Ga0268266_10248885 3300028379 Bacteria 1643
98 Ga0268265_10006068 3300028380 Bacteria 8207
99 Ga0307515_10202390 3300028794 Bacteria 1857
100 Ga0265331_10002056 3300031250 Bacteria 13933
101 Ga0265331_10051745 3300031250 Bacteria 1965
102 Ga0265327_10001035 3300031251 Bacteria 39226
103 Ga0265327_10003684 3300031251 Bacteria 14336
104 Ga0265327_10056680 3300031251 Bacteria 2018
105 Ga0307513_10277909 3300031456 Bacteria 1454
106 Ga0307508_10131657 3300031616 Bacteria 2105
107 Ga0265314_10094891 3300031711 Bacteria 1932
108 Ga0307409_100053163 3300031995 Bacteria 3111
109 Ga0307416_100123228 3300032002 Bacteria 2316
110 Ga0307416_100228330 3300032002 Bacteria 1792
111 Ga0307411_10072653 3300032005 Bacteria 2337
112 Ga0373926_0028163 3300035083 Bacteria 1971
113 Ga0373923_0107896 3300035111 Bacteria 1234
114 Ga0373936_0029632 3300035113 Bacteria 2155
115 Ga0373941_0057255 3300035115 Bacteria 1258
116 Ga0373946_0034327 3300035171 Bacteria 2048
117 Ga0373955_0196187 3300035172 Bacteria 1201
118 Ga0373927_0096392 3300035695 Bacteria 1923
119 Ga0373927_0137575 3300035695 Bacteria 1597
120 Ga0373933_0058054 3300035724 Bacteria 2327
121 Ga0373933_0107829 3300035724 Bacteria 1734
122 Ga0373947_0021583 3300035725 Bacteria 3727
123 Ga0373937_0005068 3300036401 Bacteria 11213
124 Ga0395899_0004241 3300037312 Bacteria 11226
125 Ga0395899_0016043 3300037312 Bacteria 5712
126 Ga0395899_0129340 3300037312 Bacteria 1804
127 Ga0395900_0000138 3300037418 Bacteria 122907
128 Ga0395900_0010301 3300037418 Bacteria 9565
129 Ga0395898_0002432 3300037466 Bacteria 22019
130 Ga0395898_0195218 3300037466 Bacteria 1934
131 Ga0395898_0372598 3300037466 Bacteria 1362
132 Ga0395905_0026072 3300037471 Bacteria 5512
133 Ga0395905_0340915 3300037471 Bacteria 1390
134 Ga0436364_0186461 3300037853 Bacteria 15609
135 Ga0436364_0622106 3300037853 Bacteria 16532
136 Ga0436364_0762422 3300037853 Bacteria 1500
137 Ga0436364_1473110 3300037853 Bacteria 1623
138 Ga0395901_0039288 3300038443 Bacteria 4897
139 Ga0395901_0153167 3300038443 Bacteria 2422
140 Ga0436365_1130296 3300039437 Bacteria 4324
141 Ga0436365_1386526 3300039437 Bacteria 2149
142 Ga0436360_0498289 3300039438 Bacteria 9205
143 Ga0436360_1173978 3300039438 Bacteria 5815
144 Ga0436361_0349501 3300039447 Bacteria 1739
145 Ga0436361_0778529 3300039447 Bacteria 39434
146 Ga0436361_0989314 3300039447 Bacteria 2347
147 Ga0436361_1033831 3300039447 Bacteria 2321
148 Ga0436361_1209721 3300039447 Bacteria 1898
149 Ga0436362_0283857 3300039453 Bacteria 1932
150 Ga0439465_0065967 3300041413 Bacteria 1206
151 Ga0466963_0205548 3300044694 Bacteria 1377
152 Ga0451576_0000858 3300045051 Bacteria 58813
153 Ga0466967_0197842 3300045976 Bacteria 1902
154 Ga0495592_0284864 3300046454 Bacteria 1079
155 Ga0495651_0012774 3300046462 Bacteria 6483
156 Ga0495639_0138372 3300046475 Bacteria 1169
157 Ga0495667_0020185 3300046559 Bacteria 4495
158 Ga0495634_0099344 3300046642 Bacteria 1882
159 Ga0495635_0021288 3300046663 Bacteria 4520
160 Ga0495657_0122361 3300046675 Bacteria 1638
161 Ga0495599_0030820 3300046678 Bacteria 3367
162 Ga0495599_0045876 3300046678 Bacteria 2741
163 Ga0495600_0043769 3300046809 Bacteria 2920
164 Ga0495684_0146864 3300047471 Bacteria 1766
165 Ga0495602_0340050 3300048088 Bacteria 1086
166 Ga0496104_0116541 3300048907 Bacteria 2564
167 Ga0496110_0207225 3300048913 Bacteria 1782
168 Ga0496112_0129159 3300048915 Bacteria 2498
169 Ga0496115_0310195 3300048918 Bacteria 1292
170 Ga0496121_0170475 3300048924 Bacteria 1582
171 Ga0496126_0198233 3300048929 Bacteria 1697
172 Ga0501031_0081520 3300049568 Bacteria 2109
173 Ga0501032_0006974 3300049569 Bacteria 8281
174 Ga0501033_0003051 3300049570 Bacteria 13926
175 Ga0501033_0054058 3300049570 Bacteria 2972
176 Ga0501034_0000001 3300049571 Bacteria 2184493
177 Ga0501034_0003100 3300049571 Bacteria 19162
178 Ga0501034_0262546 3300049571 Bacteria 1669
179 Ga0501036_0200933 3300049572 Bacteria 1676
180 Ga0501037_0005966 3300049573 Bacteria 8901
181 Ga0501037_0208790 3300049573 Bacteria 1378
182 Ga0501038_0000135 3300049574 Bacteria 63554
183 Ga0501038_0004020 3300049574 Bacteria 13668
184 Ga0501038_0255327 3300049574 Bacteria 1387
185 Ga0501039_0000001 3300049575 Bacteria 449008
186 Ga0501039_0343926 3300049575 Bacteria 1172
187 Ga0501043_0003629 3300049579 Bacteria 12678
188 Ga0501043_0215772 3300049579 Bacteria 1486
189 Ga0501046_0002477 3300049580 Bacteria 17307
190 Ga0501047_0133243 3300049581 Bacteria 2365
191 Ga0501047_0176525 3300049581 Bacteria 2003
192 Ga0501047_0229214 3300049581 Bacteria 1712
193 Ga0501048_0114041 3300049582 Bacteria 1909
194 Ga0501067_0021397 3300049583 Bacteria 3579
195 Ga0501067_0034677 3300049583 Bacteria 2801
196 Ga0501068_0064269 3300049584 Bacteria 2233
197 Ga0501068_0069003 3300049584 Bacteria 2155
198 Ga0501069_0001112 3300049585 Bacteria 12974
199 Ga0501070_0002394 3300049586 Bacteria 16451
200 Ga0501070_0032005 3300049586 Bacteria 4404
201 Ga0501073_0002292 3300049589 Bacteria 14312
202 Ga0501073_0022407 3300049589 Bacteria 4548
203 Ga0501073_0074745 3300049589 Bacteria 2359
204 Ga0501073_0144047 3300049589 Bacteria 1651
205 Ga0501073_0185772 3300049589 Bacteria 1438
206 Ga0501073_0188192 3300049589 Bacteria 1428
207 Ga0501074_0113419 3300049590 Bacteria 1939
208 Ga0501076_0163267 3300049592 Bacteria 1815
209 Ga0501077_0049992 3300049593 Bacteria 2657
210 Ga0501079_0066083 3300049741 Bacteria 2790
211 Ga0501080_0033523 3300049742 Bacteria 4793
212 Ga0501080_0086101 3300049742 Bacteria 2919
213 Ga0501080_0124455 3300049742 Bacteria 2388
214 Ga0501080_0132241 3300049742 Bacteria 2310
215 Ga0501080_0170278 3300049742 Bacteria 2009
216 Ga0501080_0281154 3300049742 Bacteria 1513
217 Ga0501081_0321133 3300049743 Bacteria 1138
218 Ga0501083_0001332 3300049744 Bacteria 16737
219 Ga0501083_0028045 3300049744 Bacteria 3882
220 Ga0501083_0028543 3300049744 Bacteria 3844
221 Ga0501083_0068835 3300049744 Bacteria 2355
222 Ga0501035_0004825 3300049822 Bacteria 12784
223 Ga0501044_0001665 3300049823 Bacteria 26084
224 Ga0501044_0032580 3300049823 Bacteria 5477
225 Ga0501044_0052135 3300049823 Bacteria 4217
226 Ga0501044_0080007 3300049823 Bacteria 3310
227 Ga0501044_0087865 3300049823 Bacteria 3139
228 Ga0501044_0170101 3300049823 Bacteria 2151
229 Ga0501045_0105138 3300049824 Bacteria 2092
230 nmdc:mga05p37_126987_c1 3300050507 Bacteria 3131
231 nmdc:mga05p37_441053_c1 3300050507 Bacteria 1510
232 nmdc:mga06r32_464673_c1 3300050510 Bacteria 1244
233 nmdc:mga08y16_24759_c1 3300050511 Bacteria 6334
234 nmdc:mga08y16_719105_c1 3300050511 Bacteria 997
235 nmdc:mga0n895_480117_c1 3300050512 Bacteria 1253
236 nmdc:mga08x19_12339_c1 3300050514 Bacteria 5146
237 Ga0495601_0020854 3300053077 Bacteria 4006
238 Ga0495595_0008768 3300053084 Bacteria 4163
239 Ga0495619_0009142 3300053085 Bacteria 6256
240 Ga0495619_0079207 3300053085 Bacteria 2210
241 Ga0495619_0199847 3300053085 Bacteria 1384
242 Ga0500578_0044020 3300053086 Bacteria 2865
243 Ga0500647_0106482 3300053091 Bacteria 1336
244 Ga0500651_0053385 3300053093 Bacteria 2534
245 Ga0500650_0135428 3300053098 Bacteria 1144
246 Ga0500555_023627 3300053103 Bacteria 1763
247 Ga0500562_014715 3300053108 Bacteria 2005
248 Ga0500595_013381 3300053119 Bacteria 3145
249 Ga0500618_003654 3300053125 Bacteria 5203
250 Ga0500642_0014354 3300053130 Bacteria 2944
251 Ga0500658_0022665 3300053134 Bacteria 2391
252 Ga0500573_0067399 3300053140 Bacteria 2045
253 Ga0500577_0190647 3300053142 Bacteria 882
254 Ga0500588_0000595 3300053146 Bacteria 5934
255 Ga0500636_0036654 3300053177 Bacteria 2902
256 Ga0501084_0102189 3300054114 Bacteria 2407
257 Ga0501084_0106711 3300054114 Bacteria 2353
258 Ga0587111_0016041 3300060346 Bacteria 1377
259 Ga0501082_0025449 3300060353 Bacteria 5099
260 Ga0501082_0099515 3300060353 Bacteria 2514
261 Ga0501082_0114236 3300060353 Bacteria 2338
262 Ga0501082_0154772 3300060353 Bacteria 1992
263 2512033308 2511231221 Bacteria 6846400
264 2523107281 2522572158 Bacteria 6514390
265 2599105782 2597490356 Bacteria 7030811
266 2821448663 2821443989 Bacteria 7658172
267 2842777041 2842775625 Bacteria 5587290
268 2844537374 2844533157 Bacteria 7517899
269 2846954531 2846952575 Bacteria 6587527
270 2848859206 2848858292 Bacteria 7391279
271 2883292667 2883291878 Bacteria 5894118
272 2883355635 2883354860 Bacteria 5865246
273 2883581090 2883577096 Bacteria 4709178
274 2894777304 2894772417 Bacteria 5305674
275 2897805683 2897803580 Bacteria 7000062
276 2929200381 2929199973 Bacteria 7260745
277 643389849 643348555 Bacteria 3914947
278 8054005901 8054002106 Bacteria 7987183
279 8055912441 8055909800 Bacteria 7278581
280 Ga0436364_0028532
281 JGI25151J46595_10000482
282 JGI25153J46596_10000145
283 JGI25153J46596_10000325
284 JGI25153J46596_10015132
285 rootH2_10052970
286 JGI25160J50197_1004017
287 Ga0055536_1006443
288 Ga0065165_1039274
289 Ga0065707_10204922
290 Ga0070670_100176146
291 Ga0070680_100002753
292 Ga0070674_100144859
293 Ga0070659_100038307
294 Ga0070709_10021870
295 Ga0070713_100079310
296 Ga0070713_100091415
297 Ga0070710_10082079
298 Ga0070711_100074831
299 Ga0070678_100044248
300 Ga0070681_10005977
301 Ga0070681_10032681
302 Ga0070681_10079327
303 Ga0070681_10131301
304 Ga0070681_10275866
305 Ga0070706_100129478
306 Ga0070706_100145622
307 Ga0070679_100000523
308 Ga0070679_100126658
309 Ga0070684_100082270
310 Ga0070684_100317919
311 Ga0070696_100035044
312 Ga0068855_100258197
313 Ga0068856_100476075
314 Ga0068864_100173428
315 Ga0068863_100593504
316 Ga0068862_100024902
317 Ga0081455_10037358
318 Ga0081538_10007212
319 Ga0081538_10011983
320 Ga0081539_10023348
321 Ga0070717_10163480
322 Ga0070716_100375873
323 Ga0075428_100234997
324 Ga0075434_100493228
325 Ga0075434_100555291
326 Ga0068865_100118918
327 Ga0075436_100324331
328 Ga0105240_10045735
329 Ga0111539_10011402
330 Ga0111539_10194696
331 Ga0111539_10502899
332 Ga0114129_10192084
333 Ga0114129_10506859
334 Ga0105249_10093052
335 Ga0099796_10019880
336 Ga0157370_10005680
337 Ga0157370_10017762
338 Ga0157369_10092454
339 Ga0157374_10227503
340 Ga0163163_10713054
341 Ga0157380_10064513
342 Ga0157379_10093970
343 Ga0157379_10347103
344 Ga0213872_10000278
345 Ga0213875_10044743
346 Ga0213871_10001271
347 Ga0213871_10008069
348 Ga0209148_1000793
349 Ga0209455_1000395
350 Ga0209130_1000645
351 Ga0209676_1000197
352 Ga0209025_1000712
353 Ga0209758_1000060
354 Ga0209758_1008171
355 Ga0209758_1031058
356 Ga0209050_1005125
357 Ga0207426_1000046
358 Ga0207426_1034007
359 Ga0209257_1000749
360 Ga0207684_10188730
361 Ga0207707_10000753
362 Ga0207707_10115932
363 Ga0207707_10133314
364 Ga0207693_10252897
365 Ga0207663_10100316
366 Ga0207660_10027671
367 Ga0207652_10094533
368 Ga0207652_10113601
369 Ga0207652_10231530
370 Ga0207652_10350200
371 Ga0207690_10189601
372 Ga0207665_10067106
373 Ga0207661_10156446
374 Ga0207658_10060134
375 Ga0207702_10462517
376 Ga0268266_10248885
377 Ga0268265_10006068
378 Ga0307515_10202390
379 Ga0265331_10002056
380 Ga0265331_10051745
381 Ga0265327_10001035
382 Ga0265327_10003684
383 Ga0265327_10056680
384 Ga0307513_10277909
385 Ga0307508_10131657
386 Ga0265314_10094891
387 Ga0307409_100053163
388 Ga0307416_100123228
389 Ga0307416_100228330
390 Ga0307411_10072653
391 Ga0373926_0028163
392 Ga0373923_0107896
393 Ga0373936_0029632
394 Ga0373941_0057255
395 Ga0373946_0034327
396 Ga0373955_0196187
397 Ga0373927_0096392
398 Ga0373927_0137575
399 Ga0373933_0058054
400 Ga0373933_0107829
401 Ga0373947_0021583
402 Ga0373937_0005068
403 Ga0395899_0004241
404 Ga0395899_0016043
405 Ga0395899_0129340
406 Ga0395900_0000138
407 Ga0395900_0010301
408 Ga0395898_0002432
409 Ga0395898_0195218
410 Ga0395898_0372598
411 Ga0395905_0026072
412 Ga0395905_0340915
413 Ga0436364_0186461
414 Ga0436364_0622106
415 Ga0436364_0762422
416 Ga0436364_1473110
417 Ga0395901_0039288
418 Ga0395901_0153167
419 Ga0436365_1130296
420 Ga0436365_1386526
421 Ga0436360_0498289
422 Ga0436360_1173978
423 Ga0436361_0349501
424 Ga0436361_0778529
425 Ga0436361_0989314
426 Ga0436361_1033831
427 Ga0436361_1209721
428 Ga0436362_0283857
429 Ga0439465_0065967
430 Ga0466963_0205548
431 Ga0451576_0000858
432 Ga0466967_0197842
433 Ga0495592_0284864
434 Ga0495651_0012774
435 Ga0495639_0138372
436 Ga0495667_0020185
437 Ga0495634_0099344
438 Ga0495635_0021288
439 Ga0495657_0122361
440 Ga0495599_0030820
441 Ga0495599_0045876
442 Ga0495600_0043769
443 Ga0495684_0146864
444 Ga0495602_0340050
445 Ga0496104_0116541
446 Ga0496110_0207225
447 Ga0496112_0129159
448 Ga0496115_0310195
449 Ga0496121_0170475
450 Ga0496126_0198233
451 Ga0501031_0081520
452 Ga0501032_0006974
453 Ga0501033_0003051
454 Ga0501033_0054058
455 Ga0501034_0000001
456 Ga0501034_0003100
457 Ga0501034_0262546
458 Ga0501036_0200933
459 Ga0501037_0005966
460 Ga0501037_0208790
461 Ga0501038_0000135
462 Ga0501038_0004020
463 Ga0501038_0255327
464 Ga0501039_0000001
465 Ga0501039_0343926
466 Ga0501043_0003629
467 Ga0501043_0215772
468 Ga0501046_0002477
469 Ga0501047_0133243
470 Ga0501047_0176525
471 Ga0501047_0229214
472 Ga0501048_0114041
473 Ga0501067_0021397
474 Ga0501067_0034677
475 Ga0501068_0064269
476 Ga0501068_0069003
477 Ga0501069_0001112
478 Ga0501070_0002394
479 Ga0501070_0032005
480 Ga0501073_0002292
481 Ga0501073_0022407
482 Ga0501073_0074745
483 Ga0501073_0144047
484 Ga0501073_0185772
485 Ga0501073_0188192
486 Ga0501074_0113419
487 Ga0501076_0163267
488 Ga0501077_0049992
489 Ga0501079_0066083
490 Ga0501080_0033523
491 Ga0501080_0086101
492 Ga0501080_0124455
493 Ga0501080_0132241
494 Ga0501080_0170278
495 Ga0501080_0281154
496 Ga0501081_0321133
497 Ga0501083_0001332
498 Ga0501083_0028045
499 Ga0501083_0028543
500 Ga0501083_0068835
501 Ga0501035_0004825
502 Ga0501044_0001665
503 Ga0501044_0032580
504 Ga0501044_0052135
505 Ga0501044_0080007
506 Ga0501044_0087865
507 Ga0501044_0170101
508 Ga0501045_0105138
509 nmdc:mga05p37_126987_c1
510 nmdc:mga05p37_441053_c1
511 nmdc:mga06r32_464673_c1
512 nmdc:mga08y16_24759_c1
513 nmdc:mga08y16_719105_c1
514 nmdc:mga0n895_480117_c1
515 nmdc:mga08x19_12339_c1
516 Ga0495601_0020854
517 Ga0495595_0008768
518 Ga0495619_0009142
519 Ga0495619_0079207
520 Ga0495619_0199847
521 Ga0500578_0044020
522 Ga0500647_0106482
523 Ga0500651_0053385
524 Ga0500650_0135428
525 Ga0500555_023627
526 Ga0500562_014715
527 Ga0500595_013381
528 Ga0500618_003654
529 Ga0500642_0014354
530 Ga0500658_0022665
531 Ga0500573_0067399
532 Ga0500577_0190647
533 Ga0500588_0000595
534 Ga0500636_0036654
535 Ga0501084_0102189
536 Ga0501084_0106711
537 Ga0587111_0016041
538 Ga0501082_0025449
539 Ga0501082_0099515
540 Ga0501082_0114236
541 Ga0501082_0154772
542 2512033308
543 2523107281
544 2599105782
545 2821448663
546 2842777041
547 2844537374
548 2846954531
549 2848859206
550 2883292667
551 2883355635
552 2883581090
553 2894777304
554 2897805683
555 2929200381
556 643389849
557 8054005901
558 8055912441

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01040

UbiA

UbiA prenyltransferase family

69

324

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
7bpu-assembly1.cif.gz_A structural and mechanistic insights into the biosynthesis of digeranylgeranylglyceryl phosphate synthase in membranes 0.8511 24 307
7bpu-assembly1.cif.gz_A structural and mechanistic insights into the biosynthesis of digeranylgeranylglyceryl phosphate synthase in membranes 0.8347 24 307
4od4-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.742 32 310
4od4-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.7306 32 310
8dz8-assembly3.cif.gz_C neoleukin 4, a de novo designed il-4 mimetic 0.7196 186 294
ID Description Score Start End Superfamily
af_P21592_152_300_1.10.357.140 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;UbiA prenyltransferase 0.9628 29 173 1.10.357.140
af_K8ES01_95_243_1.10.357.140 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;UbiA prenyltransferase 0.9588 29 178 1.10.357.140
af_Q12887_160_330_1.10.357.140 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;UbiA prenyltransferase 0.9587 29 199 1.10.357.140
af_F1LVF4_158_307_1.10.357.140 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;UbiA prenyltransferase 0.9571 29 179 1.10.357.140
af_K8ES01_95_243_1.10.357.140 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;UbiA prenyltransferase 0.9526 29 178 1.10.357.140
ID Description Score Start End GO Terms
AF-A0A382USZ6-F1-model_v4 Protoheme IX farnesyltransferase (Heme B farnesyltransferase) 0.9962 25 220 GO:0005886
GO:0006783
GO:0008495
AF-A0A522CRM1-F1-model_v4 Protoheme IX farnesyltransferase (EC 2.5.1.141) (Heme B farnesyltransferase) (Heme O synthase) 0.9958 21 304 GO:0005886
GO:0008495
GO:0048034
AF-A0A3B0RHW9-F1-model_v4 Protoheme IX farnesyltransferase (Heme B farnesyltransferase) 0.9952 21 235 GO:0005886
GO:0006783
GO:0008495
AF-A0A434TS00-F1-model_v4 Heme o synthase (EC 2.5.1.141) 0.9949 21 233 GO:0005886
GO:0006783
GO:0008495
AF-A0A5N7YFZ2-F1-model_v4 deleted 0.9945 21 242

Map