F379490

General Info

Members Datasets Scaffolds Average Seq Length
274 181 548 230

Family's Representative Sequence

Representative Sequence 3300005331|Ga0070670_100209742|Ga0070670_1002097422
Length 246
Sequence MKPAGAPATPHAVLFDAYGTLFDVYSVGALAEQLFPGRGEALTQLWRDKQIEYSRLTSMSRRYRPFWELTRAGLRFAAARLDLALTAERESELLGAYRHLAAFPENKPVLQQLKARGIVTGVLSNGDPEMLAVAVRSAGLFDERGRPLLDHVLSVDAVQRYKTDPAAYDLGVQAVGRPARQILFVSSNGWDAIGATWYGYSTLWVNRYRLPLEALDTEPTRMGSSLRDVLEFFPVPTKPSHKESRP

Samples

Sample ID Description Type Environment
1 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
2 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
3 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
6 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
7 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
8 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
9 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
10 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
11 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
12 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
13 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
14 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
15 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
16 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
17 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
18 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
19 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
20 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
21 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
22 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
23 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
24 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
25 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
26 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
27 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
28 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
29 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
30 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
31 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
32 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
33 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
34 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
35 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
36 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
37 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
38 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
39 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
40 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
41 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
42 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
43 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
44 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
45 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
46 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
47 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
48 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
49 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
50 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
51 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
52 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
53 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
54 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
55 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
56 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
57 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
58 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
59 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
60 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
61 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
62 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
64 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
65 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
66 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
68 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
69 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
70 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
73 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
93 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
94 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
95 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
96 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
97 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
98 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
99 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
100 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
101 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
102 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
103 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
104 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
105 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
106 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
107 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
108 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
109 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
110 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
111 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
112 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
113 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
114 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
115 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
116 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
117 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
118 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
119 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
120 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
121 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
122 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
123 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
124 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
125 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
126 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
127 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
128 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
129 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
130 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
131 3300042128 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0117W_E14_070716_123 Metagenome Rhizosphere
132 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
133 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
134 3300042147 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_080116_2618 Metagenome Rhizosphere
135 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
136 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
137 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
138 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
139 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
140 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
141 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
142 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
143 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
144 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
145 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
146 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
147 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
148 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
149 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
150 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
151 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
152 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
153 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
154 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
155 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
156 3300049759 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought Metagenome Rhizosphere
157 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
158 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
159 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
160 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
161 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
162 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
163 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
164 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
165 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
166 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
167 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
168 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
169 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
170 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
171 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
172 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
173 2511231002 Polaromonas sp. CF318 Isolate Rhizosphere
174 2643221628 Variovorax sp. Root318D1 Isolate Unclassified
175 2643221660 Methylibium sp. Root1272 Isolate Unclassified
176 2643221683 Variovorax sp. Root473 Isolate Unclassified
177 2904449895 Variovorax sp. 1763 Isolate Rhizosphere
178 2904456579 Variovorax sp. 2002 Isolate Unclassified
179 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified
180 2929520902 Variovorax beijingensis 502 Isolate Unclassified
181 2945972063 Variovorax paradoxus W2I8 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.35
Metatranscriptomes 0.36
Isolates 3.28

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 39.05
Nodule 1.09
Rhizoplane 1.46
Rhizosphere 51.09
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070670_100209742 3300005331 Bacteria 1694
2 JGI25155J39150_1000042 3300002704 Bacteria 88585
3 JGI25156J39149_1000053 3300002705 Bacteria 88796
4 JGI25154J39366_1000082 3300002738 Bacteria 88767
5 JGI25157J39369_1000072 3300002741 Bacteria 88796
6 JGI25152J39213_1025325 3300002773 Bacteria 983
7 JGI25150J39212_1006165 3300002774 Bacteria 2498
8 JGI25159J45721_1002106 3300002987 Bacteria 7812
9 JGI25159J45721_1009162 3300002987 Bacteria 2637
10 JGI25151J46595_10001345 3300003187 Bacteria 17082
11 JGI25151J46595_10009493 3300003187 Bacteria 4600
12 JGI25151J46595_10010376 3300003187 Bacteria 4336
13 JGI25151J46595_10095471 3300003187 Bacteria 815
14 JGI25160J50197_1000227 3300003354 Bacteria 44493
15 JGI25161J50226_1000007 3300003374 Bacteria 256181
16 Ga0006562J51391_1038644 3300003578 Bacteria 5060
17 Ga0055526_1004351 3300003771 Bacteria 8555
18 Ga0055526_1004379 3300003771 Bacteria 8514
19 Ga0055537_1000127 3300003773 Bacteria 58289
20 Ga0055537_1000243 3300003773 Bacteria 39987
21 Ga0055537_1016068 3300003773 Bacteria 1283
22 Ga0055524_1000098 3300003775 Bacteria 108095
23 Ga0055534_1000340 3300003784 Bacteria 30297
24 Ga0055528_1000316 3300003790 Bacteria 40688
25 Ga0055528_1001406 3300003790 Bacteria 14742
26 Ga0055530_10000893 3300003791 Bacteria 24537
27 Ga0055530_10018037 3300003791 Bacteria 2191
28 Ga0055530_10037699 3300003791 Bacteria 1207
29 Ga0055540_1000176 3300003792 Bacteria 63046
30 Ga0055540_1003012 3300003792 Bacteria 8424
31 Ga0055531_10000222 3300003794 Bacteria 62818
32 Ga0055531_10001036 3300003794 Bacteria 22011
33 Ga0055543_1000386 3300004625 Bacteria 28622
34 Ga0065165_1009210 3300005262 Bacteria 4467
35 Ga0065165_1011668 3300005262 Bacteria 3635
36 Ga0065165_1024780 3300005262 Bacteria 2008
37 Ga0065714_10100566 3300005288 Bacteria 1656
38 Ga0065714_10104864 3300005288 Bacteria 1576
39 Ga0070668_100469549 3300005347 Bacteria 1085
40 Ga0070669_100035346 3300005353 Bacteria 3619
41 Ga0070675_100014304 3300005354 Bacteria 6256
42 Ga0070674_100191038 3300005356 Bacteria 1575
43 Ga0070708_100324437 3300005445 Bacteria 1451
44 Ga0070678_100026194 3300005456 Bacteria 3938
45 Ga0070706_100051347 3300005467 Bacteria 3806
46 Ga0070707_100724153 3300005468 Bacteria 958
47 Ga0070679_100060634 3300005530 Bacteria 3770
48 Ga0070672_100009532 3300005543 Bacteria 6700
49 Ga0068855_100038471 3300005563 Bacteria 5683
50 Ga0068856_100379846 3300005614 Bacteria 1432
51 Ga0075363_100321353 3300006048 Bacteria 901
52 Ga0075364_10034964 3300006051 Bacteria 3246
53 Ga0075364_10213870 3300006051 Bacteria 1307
54 Ga0075432_10048839 3300006058 Bacteria 1490
55 Ga0075362_10009281 3300006177 Bacteria 3798
56 Ga0075362_10087460 3300006177 Bacteria 1443
57 Ga0075369_10169926 3300006186 Bacteria 1001
58 Ga0075366_10273143 3300006195 Bacteria 1032
59 Ga0075366_10333409 3300006195 Bacteria 930
60 Ga0075370_10013677 3300006353 Bacteria 4319
61 Ga0075370_10036506 3300006353 Bacteria 2760
62 Ga0075370_10076081 3300006353 Bacteria 1925
63 Ga0075370_10104406 3300006353 Bacteria 1642
64 Ga0075370_10120860 3300006353 Bacteria 1525
65 Ga0075429_100003911 3300006880 Bacteria 12729
66 Ga0079104_1015275 3300006946 Bacteria 2281
67 Ga0099826_10040454 3300006948 Bacteria 3249
68 Ga0105240_10061191 3300009093 Bacteria 4692
69 Ga0105243_10337501 3300009148 Bacteria 1379
70 Ga0105248_10883880 3300009177 Bacteria 1009
71 Ga0105246_10338902 3300011119 Bacteria 1228
72 Ga0157373_10032931 3300013100 Bacteria 3730
73 Ga0163162_10462475 3300013306 Bacteria 1400
74 Ga0157380_10159867 3300014326 Bacteria 1957
75 Ga0157380_10241233 3300014326 Bacteria 1630
76 Ga0182008_10025263 3300014497 Bacteria 3017
77 Ga0163161_10008397 3300017792 Bacteria 7147
78 Ga0209435_100019 3300025206 Bacteria 260989
79 Ga0209436_106279 3300025208 Bacteria 2625
80 Ga0207425_1001563 3300025245 Bacteria 9307
81 Ga0209646_1000038 3300025246 Bacteria 353982
82 Ga0209026_1000048 3300025250 Bacteria 257264
83 Ga0209759_1000038 3300025256 Bacteria 257264
84 Ga0209129_1005593 3300025258 Bacteria 4378
85 Ga0209565_1000026 3300025263 Bacteria 365910
86 Ga0209565_1000070 3300025263 Bacteria 168957
87 Ga0209565_1000482 3300025263 Bacteria 29305
88 Ga0209673_1000009 3300025273 Bacteria 620735
89 Ga0209673_1000234 3300025273 Bacteria 107514
90 Ga0209673_1003309 3300025273 Bacteria 9651
91 Ga0209673_1021736 3300025273 Bacteria 2235
92 Ga0209673_1039100 3300025273 Bacteria 1373
93 Ga0209130_1000289 3300025284 Bacteria 61485
94 Ga0209130_1000477 3300025284 Bacteria 41244
95 Ga0209675_1000069 3300025291 Bacteria 170538
96 Ga0209675_1000559 3300025291 Bacteria 26945
97 Ga0209675_1012699 3300025291 Bacteria 2692
98 Ga0209676_1000013 3300025292 Bacteria 816080
99 Ga0209676_1012394 3300025292 Bacteria 3353
100 Ga0209676_1018456 3300025292 Bacteria 2433
101 Ga0209025_1001518 3300025294 Bacteria 29806
102 Ga0209025_1002918 3300025294 Bacteria 17042
103 Ga0209025_1023113 3300025294 Bacteria 3266
104 Ga0209025_1029156 3300025294 Bacteria 2681
105 Ga0209564_1000579 3300025295 Bacteria 58010
106 Ga0209564_1000620 3300025295 Bacteria 54301
107 Ga0209564_1009417 3300025295 Bacteria 4653
108 Ga0209564_1032171 3300025295 Bacteria 1585
109 Ga0209758_1003713 3300025297 Bacteria 13536
110 Ga0209758_1009839 3300025297 Bacteria 5846
111 Ga0209050_1000008 3300025298 Bacteria 1144179
112 Ga0209050_1003462 3300025298 Bacteria 11602
113 Ga0209050_1013489 3300025298 Bacteria 3620
114 Ga0209050_1050584 3300025298 Bacteria 1055
115 Ga0209256_1000003 3300025299 Bacteria 1661127
116 Ga0209256_1038649 3300025299 Bacteria 1235
117 Ga0207426_1000091 3300025302 Bacteria 280561
118 Ga0207426_1001176 3300025302 Bacteria 23415
119 Ga0209051_1000005 3300025303 Bacteria 1142353
120 Ga0209051_1000737 3300025303 Bacteria 35401
121 Ga0209051_1002174 3300025303 Bacteria 14537
122 Ga0209051_1062913 3300025303 Bacteria 1158
123 Ga0209257_1000048 3300025304 Bacteria 455536
124 Ga0209257_1000446 3300025304 Bacteria 77752
125 Ga0209257_1009901 3300025304 Bacteria 4971
126 Ga0207684_10007670 3300025910 Bacteria 9679
127 Ga0207695_10093629 3300025913 Bacteria 3014
128 Ga0207671_10018580 3300025914 Bacteria 5328
129 Ga0207652_10011836 3300025921 Bacteria 7037
130 Ga0207646_10076356 3300025922 Bacteria 2993
131 Ga0207681_10110032 3300025923 Bacteria 2002
132 Ga0207650_10140402 3300025925 Bacteria 1899
133 Ga0207659_10132530 3300025926 Bacteria 1925
134 Ga0207687_10080508 3300025927 Bacteria 2351
135 Ga0207669_10080636 3300025937 Bacteria 2082
136 Ga0207691_10016225 3300025940 Bacteria 7072
137 Ga0207689_10139807 3300025942 Bacteria 1995
138 Ga0207667_10139509 3300025949 Bacteria 2496
139 Ga0207668_10390889 3300025972 Bacteria 1173
140 Ga0207702_10424228 3300026078 Bacteria 1287
141 Ga0207648_10325295 3300026089 Bacteria 1382
142 Ga0207674_10420440 3300026116 Bacteria 1291
143 Ga0209995_1000848 3300027471 Bacteria 4743
144 Ga0209968_1000456 3300027526 Bacteria 6530
145 Ga0209282_1000561 3300027666 Bacteria 18044
146 Ga0209966_1000043 3300027695 Bacteria 53437
147 Ga0209974_10049195 3300027876 Bacteria 1414
148 Ga0265330_10014694 3300031235 Bacteria 3631
149 Ga0265332_10140602 3300031238 Bacteria 1011
150 Ga0307513_10000246 3300031456 Bacteria 78455
151 Ga0307513_10214287 3300031456 Bacteria 1754
152 Ga0307408_100009661 3300031548 Bacteria 6359
153 Ga0307408_100016078 3300031548 Bacteria 4989
154 Ga0307408_100098246 3300031548 Bacteria 2225
155 Ga0307408_100149783 3300031548 Bacteria 1840
156 Ga0307408_100153051 3300031548 Bacteria 1823
157 Ga0307408_100262742 3300031548 Bacteria 1429
158 Ga0307408_100591660 3300031548 Bacteria 984
159 Ga0307514_10013769 3300031649 Bacteria 6707
160 Ga0265314_10005910 3300031711 Bacteria 10943
161 Ga0265342_10134364 3300031712 Bacteria 1384
162 Ga0307405_10043668 3300031731 Bacteria 2736
163 Ga0307413_10084481 3300031824 Bacteria 2046
164 Ga0307413_10295463 3300031824 Bacteria 1226
165 Ga0307406_10000505 3300031901 Bacteria 22399
166 Ga0307407_10098912 3300031903 Bacteria 1806
167 Ga0307412_10234411 3300031911 Bacteria 1415
168 Ga0307412_10303756 3300031911 Bacteria 1262
169 Ga0307412_10491911 3300031911 Bacteria 1019
170 Ga0307414_10053287 3300032004 Bacteria 2820
171 Ga0307414_10061075 3300032004 Bacteria 2668
172 Ga0307414_10235379 3300032004 Bacteria 1513
173 Ga0307411_10091850 3300032005 Bacteria 2122
174 Ga0307411_10542754 3300032005 Bacteria 990
175 Ga0395899_0122080 3300037312 Bacteria 1865
176 Ga0395900_0015369 3300037418 Bacteria 7803
177 Ga0395900_0043629 3300037418 Bacteria 4622
178 Ga0395898_0025952 3300037466 Bacteria 5900
179 Ga0395905_0000560 3300037471 Bacteria 50568
180 Ga0395905_0017160 3300037471 Bacteria 6876
181 Ga0395905_0060839 3300037471 Bacteria 3532
182 Ga0395905_0157783 3300037471 Bacteria 2133
183 Ga0395905_0180909 3300037471 Bacteria 1979
184 Ga0395905_0324539 3300037471 Bacteria 1429
185 Ga0395905_0421514 3300037471 Bacteria 1231
186 Ga0395901_0033195 3300038443 Bacteria 5327
187 Ga0395901_0542898 3300038443 Bacteria 1179
188 Ga0400483_075648 3300039062 Bacteria 1283
189 Ga0400483_111579 3300039062 Bacteria 3591
190 Ga0439436_0037426 3300041404 Bacteria 1397
191 Ga0439466_0014027 3300041411 Bacteria 2924
192 Ga0439465_0005825 3300041413 Bacteria 3924
193 Ga0451789_0518821 3300041443 Bacteria 883
194 Ga0451793_1305592 3300041452 Bacteria 751
195 Ga0451795_0816021 3300041456 Bacteria 1146
196 Ga0451804_0963282 3300041463 Bacteria 1407
197 Ga0439431_0002069 3300041997 Bacteria 4442
198 Ga0439442_002265 3300042002 Bacteria 3778
199 Ga0439449_0007271 3300042007 Bacteria 4209
200 Ga0439449_0089911 3300042007 Bacteria 1134
201 Ga0439452_026235 3300042010 Bacteria 1472
202 Ga0439462_0001519 3300042015 Bacteria 5190
203 Ga0450920_005989 3300042122 Bacteria 2176
204 Ga0450923_001024 3300042125 Bacteria 3503
205 Ga0450897_008413 3300042128 Bacteria 959
206 Ga0450896_006689 3300042133 Bacteria 1582
207 Ga0450906_000236 3300042145 Bacteria 10597
208 Ga0450910_006056 3300042147 Bacteria 1661
209 Ga0439446_0040832 3300042156 Bacteria 1366
210 Ga0439434_0040154 3300042435 Bacteria 1436
211 Ga0439435_0117224 3300042436 Bacteria 831
212 Ga0451577_0002259 3300042876 Bacteria 23358
213 Ga0451577_0010036 3300042876 Bacteria 9072
214 Ga0451577_0071063 3300042876 Bacteria 3103
215 Ga0451577_0080721 3300042876 Bacteria 2900
216 Ga0451577_0118741 3300042876 Bacteria 2368
217 Ga0451577_0536987 3300042876 Bacteria 1062
218 Ga0466969_0003338 3300044656 Bacteria 8542
219 Ga0453683_0003020 3300044673 Bacteria 12606
220 Ga0453683_0421558 3300044673 Bacteria 861
221 Ga0466965_0097544 3300044683 Bacteria 1500
222 Ga0453684_0066765 3300044712 Bacteria 4578
223 Ga0453684_0090936 3300044712 Bacteria 3770
224 Ga0453684_0156034 3300044712 Bacteria 2706
225 Ga0453684_0240922 3300044712 Bacteria 2082
226 Ga0453684_0332316 3300044712 Bacteria 1718
227 Ga0451576_0010868 3300045051 Bacteria 10416
228 Ga0451576_0026807 3300045051 Bacteria 6193
229 Ga0451576_0109063 3300045051 Bacteria 2880
230 Ga0495627_010811 3300046453 Bacteria 3299
231 Ga0495620_0060163 3300046515 Bacteria 1584
232 Ga0495598_0027030 3300046537 Bacteria 1579
233 Ga0495621_0028429 3300046539 Bacteria 1900
234 Ga0495625_0000197 3300046660 Bacteria 95865
235 Ga0495658_0186120 3300046683 Bacteria 1289
236 Ga0501292_010273 3300049515 Bacteria 1400
237 Ga0501036_0502294 3300049572 Bacteria 1009
238 Ga0501037_0381686 3300049573 Bacteria 968
239 Ga0501221_041001 3300049704 Bacteria 1010
240 Ga0501234_028133 3300049707 Bacteria 904
241 Ga0501241_015316 3300049758 Bacteria 1394
242 Ga0501262_000267 3300049759 Bacteria 6364
243 Ga0501044_0138387 3300049823 Bacteria 2424
244 nmdc:mga03683_124512_c1 3300050489 Bacteria 1149
245 nmdc:mga03683_3795_c1 3300050489 Bacteria 4930
246 nmdc:mga03n38_161886_c1 3300050490 Bacteria 1134
247 nmdc:mga03n38_277823_c1 3300050490 Bacteria 893
248 nmdc:mga00v17_11822_c1 3300050491 Bacteria 4802
249 nmdc:mga00v17_97013_c1 3300050491 Bacteria 1857
250 nmdc:mga0yw44_405947_c1 3300050492 Bacteria 921
251 nmdc:mga0k408_374133_c1 3300050493 Bacteria 849
252 nmdc:mga07m45_30054_c1 3300050496 Bacteria 3008
253 nmdc:mga09592_23349_c1 3300050508 Bacteria 5108
254 nmdc:mga09592_745479_c1 3300050508 Bacteria 831
255 nmdc:mga0sz30_11711_c1 3300050516 Bacteria 3394
256 Ga0500610_0007406 3300053079 Bacteria 4699
257 Ga0500641_0045165 3300053096 Bacteria 1794
258 Ga0500555_062537 3300053103 Bacteria 998
259 Ga0500593_005798 3300053117 Bacteria 4898
260 Ga0500593_013062 3300053117 Bacteria 3538
261 Ga0500608_012027 3300053122 Bacteria 3779
262 Ga0500645_000530 3300053730 Bacteria 25576
263 Ga0500645_003469 3300053730 Bacteria 6381
264 Ga0500645_024031 3300053730 Bacteria 1865
265 Ga0500661_019977 3300055283 Bacteria 1191
266 2511246276 2511231002 Bacteria 5042903
267 2644161013 2643221628 Bacteria 5745828
268 2644339678 2643221660 Bacteria 4208257
269 2644469593 2643221683 Bacteria 5749203
270 2904455530 2904449895 Bacteria 6927402
271 2904462141 2904456579 Bacteria 6819253
272 2919705712 2919704043 Bacteria 5560311
273 2929526719 2929520902 Bacteria 6765052
274 2945975082 2945972063 Bacteria 6086495
275 Ga0070670_100209742
276 JGI25155J39150_1000042
277 JGI25156J39149_1000053
278 JGI25154J39366_1000082
279 JGI25157J39369_1000072
280 JGI25152J39213_1025325
281 JGI25150J39212_1006165
282 JGI25159J45721_1002106
283 JGI25159J45721_1009162
284 JGI25151J46595_10001345
285 JGI25151J46595_10009493
286 JGI25151J46595_10010376
287 JGI25151J46595_10095471
288 JGI25160J50197_1000227
289 JGI25161J50226_1000007
290 Ga0006562J51391_1038644
291 Ga0055526_1004351
292 Ga0055526_1004379
293 Ga0055537_1000127
294 Ga0055537_1000243
295 Ga0055537_1016068
296 Ga0055524_1000098
297 Ga0055534_1000340
298 Ga0055528_1000316
299 Ga0055528_1001406
300 Ga0055530_10000893
301 Ga0055530_10018037
302 Ga0055530_10037699
303 Ga0055540_1000176
304 Ga0055540_1003012
305 Ga0055531_10000222
306 Ga0055531_10001036
307 Ga0055543_1000386
308 Ga0065165_1009210
309 Ga0065165_1011668
310 Ga0065165_1024780
311 Ga0065714_10100566
312 Ga0065714_10104864
313 Ga0070668_100469549
314 Ga0070669_100035346
315 Ga0070675_100014304
316 Ga0070674_100191038
317 Ga0070708_100324437
318 Ga0070678_100026194
319 Ga0070706_100051347
320 Ga0070707_100724153
321 Ga0070679_100060634
322 Ga0070672_100009532
323 Ga0068855_100038471
324 Ga0068856_100379846
325 Ga0075363_100321353
326 Ga0075364_10034964
327 Ga0075364_10213870
328 Ga0075432_10048839
329 Ga0075362_10009281
330 Ga0075362_10087460
331 Ga0075369_10169926
332 Ga0075366_10273143
333 Ga0075366_10333409
334 Ga0075370_10013677
335 Ga0075370_10036506
336 Ga0075370_10076081
337 Ga0075370_10104406
338 Ga0075370_10120860
339 Ga0075429_100003911
340 Ga0079104_1015275
341 Ga0099826_10040454
342 Ga0105240_10061191
343 Ga0105243_10337501
344 Ga0105248_10883880
345 Ga0105246_10338902
346 Ga0157373_10032931
347 Ga0163162_10462475
348 Ga0157380_10159867
349 Ga0157380_10241233
350 Ga0182008_10025263
351 Ga0163161_10008397
352 Ga0209435_100019
353 Ga0209436_106279
354 Ga0207425_1001563
355 Ga0209646_1000038
356 Ga0209026_1000048
357 Ga0209759_1000038
358 Ga0209129_1005593
359 Ga0209565_1000026
360 Ga0209565_1000070
361 Ga0209565_1000482
362 Ga0209673_1000009
363 Ga0209673_1000234
364 Ga0209673_1003309
365 Ga0209673_1021736
366 Ga0209673_1039100
367 Ga0209130_1000289
368 Ga0209130_1000477
369 Ga0209675_1000069
370 Ga0209675_1000559
371 Ga0209675_1012699
372 Ga0209676_1000013
373 Ga0209676_1012394
374 Ga0209676_1018456
375 Ga0209025_1001518
376 Ga0209025_1002918
377 Ga0209025_1023113
378 Ga0209025_1029156
379 Ga0209564_1000579
380 Ga0209564_1000620
381 Ga0209564_1009417
382 Ga0209564_1032171
383 Ga0209758_1003713
384 Ga0209758_1009839
385 Ga0209050_1000008
386 Ga0209050_1003462
387 Ga0209050_1013489
388 Ga0209050_1050584
389 Ga0209256_1000003
390 Ga0209256_1038649
391 Ga0207426_1000091
392 Ga0207426_1001176
393 Ga0209051_1000005
394 Ga0209051_1000737
395 Ga0209051_1002174
396 Ga0209051_1062913
397 Ga0209257_1000048
398 Ga0209257_1000446
399 Ga0209257_1009901
400 Ga0207684_10007670
401 Ga0207695_10093629
402 Ga0207671_10018580
403 Ga0207652_10011836
404 Ga0207646_10076356
405 Ga0207681_10110032
406 Ga0207650_10140402
407 Ga0207659_10132530
408 Ga0207687_10080508
409 Ga0207669_10080636
410 Ga0207691_10016225
411 Ga0207689_10139807
412 Ga0207667_10139509
413 Ga0207668_10390889
414 Ga0207702_10424228
415 Ga0207648_10325295
416 Ga0207674_10420440
417 Ga0209995_1000848
418 Ga0209968_1000456
419 Ga0209282_1000561
420 Ga0209966_1000043
421 Ga0209974_10049195
422 Ga0265330_10014694
423 Ga0265332_10140602
424 Ga0307513_10000246
425 Ga0307513_10214287
426 Ga0307408_100009661
427 Ga0307408_100016078
428 Ga0307408_100098246
429 Ga0307408_100149783
430 Ga0307408_100153051
431 Ga0307408_100262742
432 Ga0307408_100591660
433 Ga0307514_10013769
434 Ga0265314_10005910
435 Ga0265342_10134364
436 Ga0307405_10043668
437 Ga0307413_10084481
438 Ga0307413_10295463
439 Ga0307406_10000505
440 Ga0307407_10098912
441 Ga0307412_10234411
442 Ga0307412_10303756
443 Ga0307412_10491911
444 Ga0307414_10053287
445 Ga0307414_10061075
446 Ga0307414_10235379
447 Ga0307411_10091850
448 Ga0307411_10542754
449 Ga0395899_0122080
450 Ga0395900_0015369
451 Ga0395900_0043629
452 Ga0395898_0025952
453 Ga0395905_0000560
454 Ga0395905_0017160
455 Ga0395905_0060839
456 Ga0395905_0157783
457 Ga0395905_0180909
458 Ga0395905_0324539
459 Ga0395905_0421514
460 Ga0395901_0033195
461 Ga0395901_0542898
462 Ga0400483_075648
463 Ga0400483_111579
464 Ga0439436_0037426
465 Ga0439466_0014027
466 Ga0439465_0005825
467 Ga0451789_0518821
468 Ga0451793_1305592
469 Ga0451795_0816021
470 Ga0451804_0963282
471 Ga0439431_0002069
472 Ga0439442_002265
473 Ga0439449_0007271
474 Ga0439449_0089911
475 Ga0439452_026235
476 Ga0439462_0001519
477 Ga0450920_005989
478 Ga0450923_001024
479 Ga0450897_008413
480 Ga0450896_006689
481 Ga0450906_000236
482 Ga0450910_006056
483 Ga0439446_0040832
484 Ga0439434_0040154
485 Ga0439435_0117224
486 Ga0451577_0002259
487 Ga0451577_0010036
488 Ga0451577_0071063
489 Ga0451577_0080721
490 Ga0451577_0118741
491 Ga0451577_0536987
492 Ga0466969_0003338
493 Ga0453683_0003020
494 Ga0453683_0421558
495 Ga0466965_0097544
496 Ga0453684_0066765
497 Ga0453684_0090936
498 Ga0453684_0156034
499 Ga0453684_0240922
500 Ga0453684_0332316
501 Ga0451576_0010868
502 Ga0451576_0026807
503 Ga0451576_0109063
504 Ga0495627_010811
505 Ga0495620_0060163
506 Ga0495598_0027030
507 Ga0495621_0028429
508 Ga0495625_0000197
509 Ga0495658_0186120
510 Ga0501292_010273
511 Ga0501036_0502294
512 Ga0501037_0381686
513 Ga0501221_041001
514 Ga0501234_028133
515 Ga0501241_015316
516 Ga0501262_000267
517 Ga0501044_0138387
518 nmdc:mga03683_124512_c1
519 nmdc:mga03683_3795_c1
520 nmdc:mga03n38_161886_c1
521 nmdc:mga03n38_277823_c1
522 nmdc:mga00v17_11822_c1
523 nmdc:mga00v17_97013_c1
524 nmdc:mga0yw44_405947_c1
525 nmdc:mga0k408_374133_c1
526 nmdc:mga07m45_30054_c1
527 nmdc:mga09592_23349_c1
528 nmdc:mga09592_745479_c1
529 nmdc:mga0sz30_11711_c1
530 Ga0500610_0007406
531 Ga0500641_0045165
532 Ga0500555_062537
533 Ga0500593_005798
534 Ga0500593_013062
535 Ga0500608_012027
536 Ga0500645_000530
537 Ga0500645_003469
538 Ga0500645_024031
539 Ga0500661_019977
540 2511246276
541 2644161013
542 2644339678
543 2644469593
544 2904455530
545 2904462141
546 2919705712
547 2929526719
548 2945975082

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00702

Hydrolase

haloacid dehalogenase-like hydrolase

10

199

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
3umb-assembly1.cif.gz_A-2 crystal structure of the l-2-haloacid dehalogenase rsc1362 0.9788 11 230
1zrm-assembly1.cif.gz_A crystal structure of the reaction intermediate of l-2-haloacid dehalogenase with 2-chloro-n-butyrate 0.9693 12 230
3um9-assembly1.cif.gz_B crystal structure of the defluorinating l-2-haloacid dehalogenase bpro0530 0.968 11 230
2no4-assembly1.cif.gz_B crystal structure analysis of a dehalogenase 0.9597 10 230
1jud-assembly1.cif.gz_A l-2-haloacid dehalogenase 0.9586 12 230
ID Description Score Start End Superfamily
3um9B02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Putative phosphatase; domain 2 0.9806 26 102 1.10.150.240
1qh9A02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Putative phosphatase; domain 2 0.9779 26 102 1.10.150.240
3um9A02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Putative phosphatase; domain 2 0.9775 26 102 1.10.150.240
1zrmA02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Putative phosphatase; domain 2 0.9727 26 102 1.10.150.240
1zrnA02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Putative phosphatase; domain 2 0.9641 26 102 1.10.150.240
ID Description Score Start End GO Terms
AF-A0A7G8W1T4-F1-model_v4 (S)-2-haloacid dehalogenase (EC 3.8.1.2) (2-haloalkanoic acid dehalogenase) (Halocarboxylic acid halidohydrolase) (L-2-haloacid dehalogenase) 0.9874 11 230 GO:0018784
AF-A0A0R0LQ40-F1-model_v4 (S)-2-haloacid dehalogenase (EC 3.8.1.2) 0.9868 102 230 GO:0018784
AF-A0A1L9GNR5-F1-model_v4 (S)-2-haloacid dehalogenase (EC 3.8.1.2) (2-haloalkanoic acid dehalogenase) (Halocarboxylic acid halidohydrolase) (L-2-haloacid dehalogenase) 0.9848 12 230 GO:0018784
AF-A0A6G8NHH2-F1-model_v4 (S)-2-haloacid dehalogenase (EC 3.8.1.2) (2-haloalkanoic acid dehalogenase) (Halocarboxylic acid halidohydrolase) (L-2-haloacid dehalogenase) 0.9829 10 230 GO:0018784
AF-A0A536SKF5-F1-model_v4 (S)-2-haloacid dehalogenase (EC 3.8.1.2) (2-haloalkanoic acid dehalogenase) (Halocarboxylic acid halidohydrolase) (L-2-haloacid dehalogenase) 0.9803 68 230 GO:0018784

Map