F373343

General Info

Members Datasets Scaffolds Average Seq Length
265 208 204 521

Family's Representative Sequence

Representative Sequence 3300021384|Ga0213876_10008831|Ga0213876_100088313
Length 596
Sequence VQLEQPAKVDMAQDLVQETPRLISMNANDNVAIVANDFGLPAGAAAPGGPTLRERIPQGHKVALVDLPKGTPVRRYDVVIGYAAEDLPAGAWVNEQRLDMPAPPSLDGLPLATRKSPLGGALDGYTFEGFRNDDGSVGTRNLLAITTTVQCVSGVVEHAVKRIRTELLPRYGNVDDVVALEHIYGCGVAIDAPGAEIPIRTLRNISLNPNFGGTTMVVSLGCEKLQPERLLPKGAYPSRAAMGARDYDLVTLQDNSHVGFEAMISSIMQTAEQHLARLDKRRRQTCPASDLVVGLQCGGSDAFSGVTANPGLGFAADLLVRAGATVMFSENTEVRDGIAQLTARAVNEDVARELIAELGWYDNYLERGRVDRSANTTPGNKKGGLSNIVEKAMGSIVKSGSAPISGVVRPGERAKTKGLLYAATPASDFVCGTLQLAAGMTLHVFTTGRGTPYGLAAVPVIKVATRSELARRWHDLMDVDTGGIASGEATIEETGWQLFRTMLEVASGRQTWTEKWRLHNSLALFNPAPITWAVGRERVSLAGQVAEIKIVVDFFHRGPAARRAGDQADVLAVVIDDFGRAGCAAGRRGHVVAIGE

Samples

Sample ID Description Type Environment
1 2513237141 Bradyrhizobium sp. TV2a.2 Isolate Nodule
2 2519103095 Burkholderia sp. KJ006 Isolate Nodule
3 2548876994 Herbaspirillum lusitanum P6-12 Isolate Nodule
4 2582581311 Burkholderia sp. WP42 Isolate Rhizosphere
5 2599185239 Burkholderia sp. NFACC38-1 Isolate Rhizoplane
6 2599185240 Burkholderia sp. NFPP32 Isolate Rhizoplane
7 2599185292 Achromobacter sp. NFACC18-2 Isolate Rhizoplane
8 2599185355 Burkholderia sp. NFACC33-1 Isolate Rhizoplane
9 2600254954 Pseudomonas sp. NFACC19-2 Isolate Rhizoplane
10 2600255389 Pseudomonas sp. NFPP33 Isolate Rhizoplane
11 2602042107 Bradyrhizobium sp. NFR13 Isolate Rhizoplane
12 2643221569 Achromobacter sp. Root565 Isolate Unclassified
13 2643221594 Achromobacter sp. Root170 Isolate Unclassified
14 2643221621 Achromobacter sp. Root83 Isolate Unclassified
15 2675903129 Burkholderia pyrrocinia NFIX32 Isolate Rhizoplane
16 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
17 2808606366 Arthrobacter sp. SLBN-83 Isolate Unclassified
18 2808606395 Achromobacter sp. SLBN-14 Isolate Unclassified
19 2816332253 Burkholderia vietnamiensis HI2297 Isolate Unclassified
20 2816332256 Burkholderia vietnamiensis MSMB608WGS Isolate Unclassified
21 2816332286 Burkholderia vietnamiensis HI2221 Isolate Rhizosphere
22 2818991452 Burkholderia cepacia 561 Isolate Unclassified
23 2823421272 Pseudomonas mendocina S5.2 Isolate Rhizoplane
24 2841957949 Bradyrhizobium sp. CIR1 Isolate Nodule
25 2842780639 Pseudoxanthomonas sp. R-71986 Isolate Unclassified
26 2857524615 Tardiphaga sp. R-73074 Isolate Unclassified
27 2857537821 Achromobacter sp. R-71975 Isolate Unclassified
28 2857576091 Pigmentiphaga sp. R-72090 Isolate Unclassified
29 2863421361 Burkholderia cenocepacia CACua-24 Isolate Rhizosphere
30 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
31 2870068957 Burkholderia sp. JP2-270 Isolate Unclassified
32 2893066018 Tardiphaga sp. P9-11 Isolate Unclassified
33 2904564687 Burkholderia sp. 571 Isolate Unclassified
34 2904571731 Burkholderia cenocepacia 574 Isolate Unclassified
35 2919073203 Tardiphaga robiniae 1155 Isolate Unclassified
36 2919501602 Pseudomonas alcaliphila 3512 Isolate Unclassified
37 2926063275 Pseudomonas sp. 3400 Isolate Unclassified
38 2928157003 Burkholderia ambifaria 566 Isolate Unclassified
39 2928163908 Burkholderia sp. 567 Isolate Unclassified
40 2928170801 Burkholderia sp. 572 Isolate Unclassified
41 2928536128 Burkholderia sola 565 Isolate Unclassified
42 2941479691
43 2945909444 Variovorax sp. CRF3-Va-1 W1I1 Isolate Rhizosphere
44 2945920336 Pseudarthrobacter siccitolerans W1I3 Isolate Rhizosphere
45 2946037020 Arthrobacter sp. W4I7 Isolate Rhizosphere
46 2954767861 Variovorax sp. TBS-050B Isolate Rhizosphere
47 2981990288 Burkholderia sp. PvR073 Isolate Rhizosphere
48 3007252601 Pseudomonas punonensis D1-6 Isolate Unclassified
49 3007315729 Pseudomonas argentinensis SA190 Isolate Unclassified
50 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
51 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
52 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
53 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
54 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
55 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
56 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
57 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
58 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
59 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
60 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
61 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
62 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
63 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
64 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
65 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
66 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
67 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
68 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
69 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
70 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
71 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
72 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
73 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
74 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
75 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
76 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
77 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
78 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
79 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
80 3300012502 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610 Metagenome Rhizosphere
81 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
82 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
83 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
84 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
85 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
86 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
87 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
88 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
89 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
90 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
91 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
92 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
93 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
94 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
95 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
96 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
97 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
98 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
99 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
100 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
116 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
118 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
119 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
120 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
121 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
122 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
123 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
124 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
125 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
126 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
127 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
128 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
129 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
130 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
131 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
132 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
133 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
134 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
135 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
136 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
137 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
138 3300042000 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z081617_5539 Metagenome Rhizosphere
139 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
140 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
141 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
142 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
143 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
144 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
145 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
146 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
147 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
148 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
149 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
150 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
151 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
152 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
153 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
154 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
155 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
156 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
157 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
158 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
159 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
160 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
161 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
162 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
163 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
164 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
165 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
166 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
167 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
168 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
169 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
170 3300049853 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought Metagenome Rhizosphere
171 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
172 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
173 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
174 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
175 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
176 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
177 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
178 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
179 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
180 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
181 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
182 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
183 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
184 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
185 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
186 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
187 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
188 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
189 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
190 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
191 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
192 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
193 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
194 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
195 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
196 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere
197 641736154 Burkholderia ambifaria IOP40-10 Isolate Rhizosphere
198 8018845410 Burkholderia reimsis BE51 Isolate Rhizosphere
199 8020807995 Burkholderia sp. B10 Isolate Rhizosphere
200 8020938398 Burkholderia sp. BE12 Isolate Rhizosphere
201 8020945358 Burkholderia sp. BE17 Isolate Rhizosphere
202 8020953355 Burkholderia sp. BE24 Isolate Rhizosphere
203 8034962539 Pseudomonas sediminis PI11 Isolate Rhizosphere
204 8039098773 Burkholderia multivorans MSMB612WGS Isolate Unclassified
205 8040167225 Burkholderia vietnamiensis RS1 Isolate Unclassified
206 8040173305 Burkholderia vietnamiensis BE10 Isolate Rhizosphere
207 8055225921 Achromobacter panacis KCTC 42751 Isolate Rhizosphere
208 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.98
Metatranscriptomes 0
Isolates 23.02

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 25.28
Nodule 1.89
Rhizoplane 4.15
Rhizosphere 42.26
Stem 0
Stem Tuber 0
Unclassified 26.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24737J22298_10028241 3300001990 Bacteria 1764
2 Ga0055532_1000357 3300003758 Bacteria 24217
3 Ga0055532_1001404 3300003758 Bacteria 6740
4 Ga0055532_1002088 3300003758 Bacteria 4545
5 Ga0055535_1000613 3300003761 Bacteria 29198
6 Ga0055535_1000884 3300003761 Bacteria 20835
7 Ga0055542_1000641 3300003762 Bacteria 29210
8 Ga0055542_1002743 3300003762 Bacteria 5371
9 Ga0055529_1000398 3300003763 Bacteria 46298
10 Ga0055529_1003144 3300003763 Bacteria 2849
11 Ga0055526_1008542 3300003771 Bacteria 5085
12 Ga0055524_1000046 3300003775 Bacteria 150909
13 Ga0055528_1009707 3300003790 Bacteria 3999
14 Ga0055540_1000007 3300003792 Bacteria 318178
15 Ga0055531_10007583 3300003794 Bacteria 5882
16 Ga0070660_100000323 3300005339 Bacteria 31631
17 Ga0070709_10001777 3300005434 Bacteria 11722
18 Ga0070710_10001734 3300005437 Bacteria 10302
19 Ga0070711_100036817 3300005439 Bacteria 3280
20 Ga0070663_100000054 3300005455 Bacteria 51309
21 Ga0068852_100002540 3300005616 Bacteria 12565
22 Ga0068858_100145350 3300005842 Bacteria 2227
23 Ga0068860_100000146 3300005843 Bacteria 115795
24 Ga0081455_10011922 3300005937 Bacteria 8698
25 Ga0070716_100002849 3300006173 Bacteria 8055
26 Ga0070712_100036226 3300006175 Bacteria 3356
27 Ga0075366_10003678 3300006195 Bacteria 8137
28 Ga0075366_10009088 3300006195 Bacteria 5541
29 Ga0075431_100000233 3300006847 Bacteria 41607
30 Ga0075429_100024679 3300006880 Bacteria 5218
31 Ga0075435_100038077 3300007076 Bacteria 3833
32 Ga0105251_10000638 3300009011 Bacteria 32168
33 Ga0105240_10027008 3300009093 Bacteria 7525
34 Ga0105245_10136194 3300009098 Bacteria 2308
35 Ga0105247_10022576 3300009101 Bacteria 3790
36 Ga0105238_10048895 3300009551 Bacteria 4260
37 Ga0157347_1000931 3300012502 Bacteria 2129
38 Ga0157373_10043648 3300013100 Bacteria 3202
39 Ga0157371_10017881 3300013102 Bacteria 5256
40 Ga0157378_10004686 3300013297 Bacteria 12000
41 Ga0182006_1004234 3300015261 Bacteria 7108
42 Ga0213876_10008831 3300021384 Bacteria 5440
43 Ga0213876_10011919 3300021384 Bacteria 4633
44 Ga0209566_100341 3300025225 Bacteria 40811
45 Ga0209674_100589 3300025226 Bacteria 13983
46 Ga0209672_100012 3300025228 Bacteria 795742
47 Ga0209672_100057 3300025228 Bacteria 215485
48 Ga0209147_100007 3300025229 Bacteria 795684
49 Ga0209147_100047 3300025229 Bacteria 288873
50 Ga0209147_100241 3300025229 Bacteria 53164
51 Ga0209258_100014 3300025242 Bacteria 720132
52 Ga0209258_100065 3300025242 Bacteria 288500
53 Ga0209148_1000091 3300025254 Bacteria 250913
54 Ga0209148_1001609 3300025254 Bacteria 10531
55 Ga0209455_1000074 3300025272 Bacteria 289143
56 Ga0209455_1000418 3300025272 Bacteria 33645
57 Ga0209673_1000198 3300025273 Bacteria 121230
58 Ga0209676_1010035 3300025292 Bacteria 4000
59 Ga0209564_1000384 3300025295 Bacteria 80490
60 Ga0209564_1003129 3300025295 Bacteria 11681
61 Ga0209050_1009442 3300025298 Bacteria 4991
62 Ga0209256_1000019 3300025299 Bacteria 558627
63 Ga0209051_1000004 3300025303 Bacteria 1155596
64 Ga0209051_1006557 3300025303 Bacteria 6535
65 Ga0209257_1000038 3300025304 Bacteria 609032
66 Ga0209257_1000044 3300025304 Bacteria 486709
67 Ga0207692_10002826 3300025898 Bacteria 6706
68 Ga0207647_10006277 3300025904 Bacteria 8655
69 Ga0207699_10003172 3300025906 Bacteria 7819
70 Ga0207705_10022552 3300025909 Bacteria 4490
71 Ga0207695_10003825 3300025913 Bacteria 20862
72 Ga0207693_10078055 3300025915 Bacteria 2592
73 Ga0207663_10001012 3300025916 Bacteria 12865
74 Ga0207657_10000152 3300025919 Bacteria 70647
75 Ga0207700_10003048 3300025928 Bacteria 9668
76 Ga0207664_10007309 3300025929 Bacteria 7658
77 Ga0207690_10000038 3300025932 Bacteria 136549
78 Ga0207665_10012176 3300025939 Bacteria 5649
79 Ga0207661_10187487 3300025944 Bacteria 1811
80 Ga0207667_10178326 3300025949 Bacteria 2182
81 Ga0207678_10000109 3300026067 Bacteria 67556
82 Ga0207683_10078429 3300026121 Bacteria 2927
83 Ga0207698_10008573 3300026142 Bacteria 6479
84 Ga0209281_1000023 3300027111 Bacteria 519955
85 Ga0209371_1000197 3300027312 Bacteria 88691
86 Ga0209371_1000236 3300027312 Bacteria 69437
87 Ga0268264_10000050 3300028381 Bacteria 323697
88 Ga0307515_10000006 3300028794 Bacteria 725810
89 Ga0268256_1000147 3300030500 Bacteria 94888
90 Ga0268256_1000220 3300030500 Bacteria 63155
91 Ga0307513_10006563 3300031456 Bacteria 15193
92 Ga0307408_100000025 3300031548 Bacteria 267563
93 Ga0307508_10000002 3300031616 Bacteria 407635
94 Ga0307508_10117343 3300031616 Bacteria 2262
95 Ga0307516_10011829 3300031730 Bacteria 9455
96 Ga0307516_10060620 3300031730 Bacteria 3675
97 Ga0307412_10005148 3300031911 Bacteria 7323
98 Ga0307412_10034027 3300031911 Bacteria 3245
99 Ga0307507_10030037 3300033179 Bacteria 5742
100 Ga0395899_0000028 3300037312 Bacteria 334378
101 Ga0395899_0005339 3300037312 Bacteria 9981
102 Ga0395900_0000986 3300037418 Bacteria 37037
103 Ga0395900_0006702 3300037418 Bacteria 11967
104 Ga0395900_0010267 3300037418 Bacteria 9577
105 Ga0395900_0022196 3300037418 Bacteria 6493
106 Ga0395900_0118726 3300037418 Bacteria 2714
107 Ga0395900_0146020 3300037418 Bacteria 2419
108 Ga0395898_0074931 3300037466 Bacteria 3269
109 Ga0395898_0099570 3300037466 Bacteria 2791
110 Ga0395905_0001517 3300037471 Bacteria 27777
111 Ga0395905_0048230 3300037471 Bacteria 3992
112 Ga0395905_0050024 3300037471 Bacteria 3917
113 Ga0395905_0083878 3300037471 Bacteria 2985
114 Ga0395905_0124462 3300037471 Bacteria 2424
115 Ga0395901_0001736 3300038443 Bacteria 22521
116 Ga0395901_0005449 3300038443 Bacteria 12882
117 Ga0395901_0032164 3300038443 Bacteria 5414
118 Ga0395901_0191633 3300038443 Bacteria 2144
119 Ga0400483_010490 3300039062 Bacteria 2570
120 Ga0400483_200751 3300039062 Bacteria 4277
121 Ga0436365_0031016 3300039437 Bacteria 19862
122 Ga0436360_0234828 3300039438 Bacteria 7229
123 Ga0436361_0188883 3300039447 Bacteria 2510
124 Ga0436362_0220621 3300039453 Bacteria 4723
125 Ga0439437_000862 3300042000 Bacteria 3152
126 Ga0439455_0010167 3300042012 Bacteria 2062
127 Ga0450911_000024 3300042115 Bacteria 84076
128 Ga0450893_0006211 3300042532 Bacteria 1929
129 Ga0466958_0084399 3300045836 Bacteria 1959
130 Ga0495638_0030515 3300046460 Bacteria 3469
131 Ga0495607_0002534 3300046501 Bacteria 14780
132 Ga0495606_0014170 3300046507 Bacteria 6241
133 Ga0495616_0001959 3300046513 Bacteria 13856
134 Ga0495620_0034271 3300046515 Bacteria 2296
135 Ga0495637_0023470 3300046520 Bacteria 2803
136 Ga0495648_0008031 3300046524 Bacteria 8353
137 Ga0495663_0000273 3300046525 Bacteria 19772
138 Ga0495647_0024880 3300046681 Bacteria 2183
139 Ga0495670_0018639 3300046691 Bacteria 3418
140 Ga0495671_0001179 3300046692 Bacteria 17891
141 Ga0495671_0002095 3300046692 Bacteria 12782
142 Ga0495675_0080623 3300047444 Bacteria 2050
143 Ga0495686_0000344 3300047472 Bacteria 76585
144 Ga0496102_0001671 3300048905 Bacteria 19477
145 Ga0496106_0000480 3300048909 Bacteria 28392
146 Ga0496116_0005759 3300048919 Bacteria 11395
147 Ga0496117_0024314 3300048920 Bacteria 4795
148 Ga0496117_0042845 3300048920 Bacteria 3299
149 Ga0496118_0000517 3300048921 Bacteria 63399
150 Ga0496118_0014852 3300048921 Bacteria 7255
151 Ga0496118_0125921 3300048921 Bacteria 1658
152 Ga0496119_0008344 3300048922 Bacteria 9131
153 Ga0496119_0050594 3300048922 Bacteria 2560
154 Ga0496120_0019268 3300048923 Bacteria 4370
155 Ga0496121_0000814 3300048924 Bacteria 56901
156 Ga0496121_0000847 3300048924 Bacteria 55469
157 Ga0496121_0007453 3300048924 Bacteria 13219
158 Ga0496121_0091239 3300048924 Bacteria 2379
159 Ga0496122_0000017 3300048925 Bacteria 439553
160 Ga0496122_0005179 3300048925 Bacteria 15681
161 Ga0496122_0025093 3300048925 Bacteria 5193
162 Ga0496123_0000033 3300048926 Bacteria 274961
163 Ga0496123_0002979 3300048926 Bacteria 19666
164 Ga0496123_0017141 3300048926 Bacteria 5844
165 Ga0496124_0000020 3300048927 Bacteria 434107
166 Ga0496124_0001370 3300048927 Bacteria 36487
167 Ga0496125_0000005 3300048928 Bacteria 827598
168 Ga0496125_0004611 3300048928 Bacteria 15750
169 Ga0496125_0042679 3300048928 Bacteria 3859
170 Ga0496125_0051737 3300048928 Bacteria 3384
171 Ga0496126_0009132 3300048929 Bacteria 10579
172 Ga0496126_0064496 3300048929 Bacteria 3281
173 Ga0496126_0123895 3300048929 Bacteria 2238
174 Ga0501075_0065724 3300049591 Bacteria 2737
175 Ga0501226_000001 3300049853 Bacteria 432595
176 nmdc:mga0yw44_75804_c1 3300050492 Bacteria 2098
177 nmdc:mga0k408_16113_c1 3300050493 Bacteria 4142
178 nmdc:mga09592_37458_c2 3300050508 Bacteria 3302
179 nmdc:mga0sz30_9461_c1 3300050516 Bacteria 3710
180 Ga0500644_0006191 3300053088 Bacteria 3054
181 Ga0500651_0110284 3300053093 Bacteria 1679
182 Ga0500566_0000144 3300053094 Bacteria 36317
183 Ga0500566_0009855 3300053094 Bacteria 5641
184 Ga0500641_0037544 3300053096 Bacteria 1943
185 Ga0500650_0000327 3300053098 Bacteria 11433
186 Ga0500556_0000005 3300053104 Bacteria 581135
187 Ga0500569_000667 3300053109 Bacteria 5917
188 Ga0500593_000105 3300053117 Bacteria 32307
189 Ga0500593_008182 3300053117 Bacteria 4289
190 Ga0500595_000288 3300053119 Bacteria 33340
191 Ga0500607_009783 3300053121 Bacteria 5752
192 Ga0500608_000314 3300053122 Bacteria 18695
193 Ga0500642_0000275 3300053130 Bacteria 19281
194 Ga0500652_000697 3300053131 Bacteria 11434
195 Ga0500559_0000791 3300053136 Bacteria 20652
196 Ga0500559_0001601 3300053136 Bacteria 12596
197 Ga0500568_0000261 3300053139 Bacteria 44777
198 Ga0500604_0003132 3300053151 Bacteria 4445
199 Ga0500616_0000118 3300053153 Bacteria 143496
200 Ga0500622_0001654 3300053156 Bacteria 17429
201 Ga0500638_000867 3300053162 Bacteria 8488
202 Ga0500636_0005397 3300053177 Bacteria 7294
203 Ga0500637_0000257 3300053178 Bacteria 19771
204 Ga0500596_002016 3300053735 Bacteria 4061

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2548876994 2550697011 420
2 3300025944 Ga0207661_10187487 Ga0207661_101874871 469
3 iso_pu_bacteria 2866552031 2866556532 476
4 iso_pu_bacteria 2841957949 2841966145 477
5 iso_pu_bacteria 8056207758 8056213522 479
6 3300037312 Ga0395899_0005339 Ga0395899_0005339_4609_6156 487
7 3300037418 Ga0395900_0006702 Ga0395900_0006702_4627_6174 487
8 3300037466 Ga0395898_0074931 Ga0395898_0074931_1212_2759 487
9 3300037471 Ga0395905_0001517 Ga0395905_0001517_20137_21684 487
10 3300038443 Ga0395901_0005449 Ga0395901_0005449_2451_3998 487
11 iso_pu_bacteria 2808606366 2808877962 487
12 iso_pu_bacteria 2945920336 2945922937 487
13 iso_pu_bacteria 2946037020 2946041360 487
14 3300053136 Ga0500559_0001601 Ga0500559_0001601_10411_11958 492
15 3300053735 Ga0500596_002016 Ga0500596_002016_1860_3407 492
16 3300031548 Ga0307408_100000025 Ga0307408_100000025159 493
17 3300046501 Ga0495607_0002534 Ga0495607_0002534_6333_7928 494
18 3300031456 Ga0307513_10006563 Ga0307513_1000656313 495
19 3300039062 Ga0400483_200751 Ga0400483_200751_2167_3654 495
20 3300046525 Ga0495663_0000273 Ga0495663_0000273_2657_4207 497
21 3300046692 Ga0495671_0001179 Ga0495671_0001179_15666_17216 497
22 3300047444 Ga0495675_0080623 Ga0495675_0080623_40_1578 498
23 3300045836 Ga0466958_0084399 Ga0466958_0084399_379_1932 499
24 3300037418 Ga0395900_0000986 Ga0395900_0000986_21208_22803 501
25 3300037418 Ga0395900_0010267 Ga0395900_0010267_2548_4176 501
26 3300038443 Ga0395901_0001736 Ga0395901_0001736_15456_17084 501
27 3300050493 nmdc:mga0k408_16113_c1 nmdc:mga0k408_16113_c1_660_2186 503
28 3300007076 Ga0075435_100038077 Ga0075435_1000380773 504
29 3300037312 Ga0395899_0000028 Ga0395899_0000028_280949_282472 504
30 3300046507 Ga0495606_0014170 Ga0495606_0014170_3246_4796 504
31 3300046513 Ga0495616_0001959 Ga0495616_0001959_7471_9021 504
32 3300047472 Ga0495686_0000344 Ga0495686_0000344_62339_63862 504
33 3300048925 Ga0496122_0005179 Ga0496122_0005179_7745_9286 504
34 3300048926 Ga0496123_0002979 Ga0496123_0002979_7656_9197 504
35 3300048927 Ga0496124_0000020 Ga0496124_0000020_33623_35230 504
36 iso_pu_bacteria 2747842501 2748019532 504
37 iso_pu_bacteria 2842780639 2842784470 504
38 3300006847 Ga0075431_100000233 Ga0075431_10000023328 505
39 3300006880 Ga0075429_100024679 Ga0075429_1000246793 505
40 3300039062 Ga0400483_010490 Ga0400483_010490_529_2082 505
41 3300050508 nmdc:mga09592_37458_c2 nmdc:mga09592_37458_c2_197_1747 505
42 3300009011 Ga0105251_10000638 Ga0105251_1000063820 506
43 3300013100 Ga0157373_10043648 Ga0157373_100436481 506
44 3300013102 Ga0157371_10017881 Ga0157371_100178812 506
45 3300015261 Ga0182006_1004234 Ga0182006_10042344 506
46 3300027312 Ga0209371_1000197 Ga0209371_100019771 506
47 3300030500 Ga0268256_1000147 Ga0268256_100014777 506
48 3300042000 Ga0439437_000862 Ga0439437_000862_654_2210 506
49 3300042012 Ga0439455_0010167 Ga0439455_0010167_21_1577 506
50 3300042115 Ga0450911_000024 Ga0450911_000024_24378_25934 506
51 3300042532 Ga0450893_0006211 Ga0450893_0006211_26_1582 506
52 3300049591 Ga0501075_0065724 Ga0501075_0065724_404_1957 506
53 3300049853 Ga0501226_000001 Ga0501226_000001_212264_213820 506
54 iso_pu_bacteria 2600254954 2600443248 506
55 iso_pu_bacteria 2600255389 2602009271 506
56 iso_pu_bacteria 2823421272 2823424858 506
57 iso_pu_bacteria 2919501602 2919504596 506
58 iso_pu_bacteria 2926063275 2926064831 506
59 iso_pu_bacteria 3007252601 3007255995 506
60 iso_pu_bacteria 3007315729 3007319939 506
61 iso_pu_bacteria 8034962539 8034962840 506
62 3300003771 Ga0055526_1008542 Ga0055526_10085421 507
63 3300005937 Ga0081455_10011922 Ga0081455_100119225 507
64 3300013297 Ga0157378_10004686 Ga0157378_1000468613 507
65 3300025295 Ga0209564_1000384 Ga0209564_100038457 507
66 3300026121 Ga0207683_10078429 Ga0207683_100784291 507
67 3300031911 Ga0307412_10034027 Ga0307412_100340272 507
68 3300037418 Ga0395900_0146020 Ga0395900_0146020_245_1786 507
69 3300037466 Ga0395898_0099570 Ga0395898_0099570_408_1949 507
70 3300037471 Ga0395905_0124462 Ga0395905_0124462_322_1866 507
71 3300038443 Ga0395901_0191633 Ga0395901_0191633_45_1586 507
72 3300039438 Ga0436360_0234828 Ga0436360_0234828_3118_4659 507
73 3300039447 Ga0436361_0188883 Ga0436361_0188883_119_1660 507
74 3300046460 Ga0495638_0030515 Ga0495638_0030515_797_2401 507
75 3300046524 Ga0495648_0008031 Ga0495648_0008031_6316_7857 507
76 3300046691 Ga0495670_0018639 Ga0495670_0018639_12_1616 507
77 3300048920 Ga0496117_0042845 Ga0496117_0042845_704_2308 507
78 3300048921 Ga0496118_0014852 Ga0496118_0014852_972_2618 507
79 3300048921 Ga0496118_0125921 Ga0496118_0125921_91_1635 507
80 3300048922 Ga0496119_0050594 Ga0496119_0050594_462_2066 507
81 3300048924 Ga0496121_0007453 Ga0496121_0007453_8137_9681 507
82 3300048924 Ga0496121_0091239 Ga0496121_0091239_72_1676 507
83 3300048925 Ga0496122_0025093 Ga0496122_0025093_1589_3193 507
84 3300048926 Ga0496123_0017141 Ga0496123_0017141_3488_5092 507
85 3300048928 Ga0496125_0004611 Ga0496125_0004611_3449_4993 507
86 3300048928 Ga0496125_0042679 Ga0496125_0042679_1853_3397 507
87 3300048929 Ga0496126_0123895 Ga0496126_0123895_441_2045 507
88 3300050492 nmdc:mga0yw44_75804_c1 nmdc:mga0yw44_75804_c1_425_2029 507
89 3300050516 nmdc:mga0sz30_9461_c1 nmdc:mga0sz30_9461_c1_1941_3545 507
90 3300053088 Ga0500644_0006191 Ga0500644_0006191_1473_3017 507
91 3300053093 Ga0500651_0110284 Ga0500651_0110284_82_1626 507
92 3300053094 Ga0500566_0000144 Ga0500566_0000144_32076_33620 507
93 3300053094 Ga0500566_0009855 Ga0500566_0009855_1582_3126 507
94 3300053096 Ga0500641_0037544 Ga0500641_0037544_57_1661 507
95 3300053098 Ga0500650_0000327 Ga0500650_0000327_2938_4542 507
96 3300053104 Ga0500556_0000005 Ga0500556_0000005_10698_12344 507
97 3300053109 Ga0500569_000667 Ga0500569_000667_2839_4443 507
98 3300053119 Ga0500595_000288 Ga0500595_000288_22567_24111 507
99 3300053122 Ga0500608_000314 Ga0500608_000314_9227_10771 507
100 3300053130 Ga0500642_0000275 Ga0500642_0000275_10798_12402 507
101 3300053131 Ga0500652_000697 Ga0500652_000697_225_1769 507
102 3300053136 Ga0500559_0000791 Ga0500559_0000791_9776_11320 507
103 3300053139 Ga0500568_0000261 Ga0500568_0000261_10288_11892 507
104 3300053151 Ga0500604_0003132 Ga0500604_0003132_1789_3393 507
105 3300053153 Ga0500616_0000118 Ga0500616_0000118_103792_105336 507
106 3300053156 Ga0500622_0001654 Ga0500622_0001654_4602_6206 507
107 3300053162 Ga0500638_000867 Ga0500638_000867_2508_4052 507
108 3300053177 Ga0500636_0005397 Ga0500636_0005397_482_2026 507
109 3300053178 Ga0500637_0000257 Ga0500637_0000257_11823_13367 507
110 iso_pu_bacteria 2513237141 2513887594 507
111 iso_pu_bacteria 2602042107 2603858117 507
112 iso_pu_bacteria 2857524615 2857527504 507
113 iso_pu_bacteria 2893066018 2893066996 507
114 iso_pu_bacteria 2919073203 2919073354 507
115 3300037471 Ga0395905_0050024 Ga0395905_0050024_2100_3647 508
116 3300021384 Ga0213876_10011919 Ga0213876_100119192 510
117 3300037418 Ga0395900_0022196 Ga0395900_0022196_4418_5992 510
118 3300037471 Ga0395905_0083878 Ga0395905_0083878_195_1769 510
119 3300039437 Ga0436365_0031016 Ga0436365_0031016_11863_13452 510
120 3300006195 Ga0075366_10003678 Ga0075366_100036783 512
121 3300006195 Ga0075366_10009088 Ga0075366_100090883 512
122 3300009098 Ga0105245_10136194 Ga0105245_101361942 512
123 3300048905 Ga0496102_0001671 Ga0496102_0001671_678_2270 512
124 iso_pu_bacteria 8055225921 8055228780 512
125 3300005434 Ga0070709_10001777 Ga0070709_100017774 513
126 3300005437 Ga0070710_10001734 Ga0070710_100017349 513
127 3300005439 Ga0070711_100036817 Ga0070711_1000368172 513
128 3300006173 Ga0070716_100002849 Ga0070716_10000284911 513
129 3300006175 Ga0070712_100036226 Ga0070712_1000362263 513
130 3300021384 Ga0213876_10008831 Ga0213876_100088313 513
131 3300025898 Ga0207692_10002826 Ga0207692_100028262 513
132 3300025906 Ga0207699_10003172 Ga0207699_100031724 513
133 3300025915 Ga0207693_10078055 Ga0207693_100780552 513
134 3300025916 Ga0207663_10001012 Ga0207663_100010123 513
135 3300025928 Ga0207700_10003048 Ga0207700_100030483 513
136 3300025929 Ga0207664_10007309 Ga0207664_100073099 513
137 3300025939 Ga0207665_10012176 Ga0207665_100121766 513
138 3300039453 Ga0436362_0220621 Ga0436362_0220621_1989_3674 513
139 3300046681 Ga0495647_0024880 Ga0495647_0024880_75_1703 513
140 3300053117 Ga0500593_000105 Ga0500593_000105_2231_3790 513
141 iso_pu_bacteria 2519103095 2519460478 513
142 iso_pu_bacteria 2582581311 2585292973 513
143 iso_pu_bacteria 2599185239 2599736071 513
144 iso_pu_bacteria 2816332253 2817257733 513
145 iso_pu_bacteria 2816332256 2817281869 513
146 iso_pu_bacteria 2816332286 2817451670 513
147 iso_pu_bacteria 2818991452 2819637492 513
148 iso_pu_bacteria 2857576091 2857579929 513
149 iso_pu_bacteria 2863421361 2863423709 513
150 iso_pu_bacteria 2870068957 2870073759 513
151 iso_pu_bacteria 2904564687 2904568282 513
152 iso_pu_bacteria 2904571731 2904575325 513
153 iso_pu_bacteria 2928157003 2928160653 513
154 iso_pu_bacteria 2928163908 2928169837 513
155 iso_pu_bacteria 2928170801 2928171503 513
156 iso_pu_bacteria 2928536128 2928536148 513
157 iso_pu_bacteria 2981990288 2981991704 513
158 iso_pu_bacteria 641736154 642417050 513
159 iso_pu_bacteria 8018845410 8018853605 513
160 iso_pu_bacteria 8020807995 8020808380 513
161 iso_pu_bacteria 8020938398 8020940880 513
162 iso_pu_bacteria 8020953355 8020956574 513
163 iso_pu_bacteria 8039098773 8039103447 513
164 iso_pu_bacteria 8040167225 8040168444 513
165 iso_pu_bacteria 8040173305 8040178100 513
166 3300005842 Ga0068858_100145350 Ga0068858_1001453502 514
167 3300005843 Ga0068860_100000146 Ga0068860_10000014692 514
168 3300009101 Ga0105247_10022576 Ga0105247_100225762 514
169 3300028381 Ga0268264_10000050 Ga0268264_10000050286 514
170 3300031616 Ga0307508_10000002 Ga0307508_10000002309 514
171 3300031616 Ga0307508_10117343 Ga0307508_101173432 514
172 3300031730 Ga0307516_10011829 Ga0307516_1001182911 514
173 3300031730 Ga0307516_10060620 Ga0307516_100606202 514
174 3300033179 Ga0307507_10030037 Ga0307507_100300372 514
175 3300037418 Ga0395900_0118726 Ga0395900_0118726_121_1698 514
176 3300037471 Ga0395905_0048230 Ga0395905_0048230_49_1626 514
177 3300038443 Ga0395901_0032164 Ga0395901_0032164_1597_3174 514
178 3300048909 Ga0496106_0000480 Ga0496106_0000480_22852_24576 514
179 3300048920 Ga0496117_0024314 Ga0496117_0024314_829_2553 514
180 3300048921 Ga0496118_0000517 Ga0496118_0000517_36105_37829 514
181 3300048924 Ga0496121_0000814 Ga0496121_0000814_20855_22579 514
182 3300048927 Ga0496124_0001370 Ga0496124_0001370_6885_8609 514
183 3300048929 Ga0496126_0009132 Ga0496126_0009132_6892_8616 514
184 3300025292 Ga0209676_1010035 Ga0209676_10100353 516
185 3300025303 Ga0209051_1006557 Ga0209051_10065573 516
186 3300028794 Ga0307515_10000006 Ga0307515_10000006322 516
187 3300031911 Ga0307412_10005148 Ga0307412_100051482 516
188 3300048919 Ga0496116_0005759 Ga0496116_0005759_316_1950 516
189 3300048922 Ga0496119_0008344 Ga0496119_0008344_2982_4616 516
190 3300048923 Ga0496120_0019268 Ga0496120_0019268_2180_3814 516
191 3300048924 Ga0496121_0000847 Ga0496121_0000847_14134_15768 516
192 3300048925 Ga0496122_0000017 Ga0496122_0000017_357472_359175 516
193 3300048926 Ga0496123_0000033 Ga0496123_0000033_79258_80961 516
194 3300048928 Ga0496125_0000005 Ga0496125_0000005_813837_815471 516
195 3300048928 Ga0496125_0051737 Ga0496125_0051737_539_2242 516
196 3300048929 Ga0496126_0064496 Ga0496126_0064496_588_2291 516
197 iso_pu_bacteria 2599185292 2599902530 516
198 iso_pu_bacteria 2643221569 2643859879 516
199 iso_pu_bacteria 2643221594 2643979172 516
200 iso_pu_bacteria 2643221621 2644121214 516
201 iso_pu_bacteria 2808606395 2809036065 516
202 iso_pu_bacteria 2857537821 2857540985 516
203 iso_pu_bacteria 2941479691 2941481455 516
204 3300001990 JGI24737J22298_10028241 JGI24737J22298_100282411 517
205 3300003758 Ga0055532_1000357 Ga0055532_100035721 517
206 3300003758 Ga0055532_1001404 Ga0055532_10014047 517
207 3300003758 Ga0055532_1002088 Ga0055532_10020885 517
208 3300003761 Ga0055535_1000613 Ga0055535_100061321 517
209 3300003761 Ga0055535_1000884 Ga0055535_100088412 517
210 3300003762 Ga0055542_1000641 Ga0055542_100064121 517
211 3300003762 Ga0055542_1002743 Ga0055542_10027434 517
212 3300003763 Ga0055529_1000398 Ga0055529_100039823 517
213 3300003763 Ga0055529_1003144 Ga0055529_10031442 517
214 3300003775 Ga0055524_1000046 Ga0055524_1000046102 517
215 3300003790 Ga0055528_1009707 Ga0055528_10097073 517
216 3300003792 Ga0055540_1000007 Ga0055540_1000007301 517
217 3300003794 Ga0055531_10007583 Ga0055531_100075835 517
218 3300005339 Ga0070660_100000323 Ga0070660_1000003239 517
219 3300005455 Ga0070663_100000054 Ga0070663_10000005426 517
220 3300005616 Ga0068852_100002540 Ga0068852_1000025406 517
221 3300009093 Ga0105240_10027008 Ga0105240_100270087 517
222 3300009551 Ga0105238_10048895 Ga0105238_100488955 517
223 3300012502 Ga0157347_1000931 Ga0157347_10009312 517
224 3300025225 Ga0209566_100341 Ga0209566_10034124 517
225 3300025226 Ga0209674_100589 Ga0209674_10058911 517
226 3300025228 Ga0209672_100012 Ga0209672_100012749 517
227 3300025228 Ga0209672_100057 Ga0209672_100057182 517
228 3300025229 Ga0209147_100007 Ga0209147_10000721 517
229 3300025229 Ga0209147_100047 Ga0209147_10004725 517
230 3300025229 Ga0209147_100241 Ga0209147_10024125 517
231 3300025242 Ga0209258_100014 Ga0209258_100014681 517
232 3300025242 Ga0209258_100065 Ga0209258_100065255 517
233 3300025254 Ga0209148_1000091 Ga0209148_1000091232 517
234 3300025254 Ga0209148_1001609 Ga0209148_10016099 517
235 3300025272 Ga0209455_1000074 Ga0209455_100007425 517
236 3300025272 Ga0209455_1000418 Ga0209455_100041823 517
237 3300025273 Ga0209673_1000198 Ga0209673_100019822 517
238 3300025295 Ga0209564_1003129 Ga0209564_10031299 517
239 3300025298 Ga0209050_1009442 Ga0209050_10094423 517
240 3300025299 Ga0209256_1000019 Ga0209256_100001947 517
241 3300025303 Ga0209051_1000004 Ga0209051_1000004355 517
242 3300025304 Ga0209257_1000038 Ga0209257_1000038489 517
243 3300025304 Ga0209257_1000044 Ga0209257_100004470 517
244 3300025904 Ga0207647_10006277 Ga0207647_100062778 517
245 3300025909 Ga0207705_10022552 Ga0207705_100225523 517
246 3300025913 Ga0207695_10003825 Ga0207695_1000382514 517
247 3300025919 Ga0207657_10000152 Ga0207657_1000015223 517
248 3300025932 Ga0207690_10000038 Ga0207690_1000003823 517
249 3300025949 Ga0207667_10178326 Ga0207667_101783262 517
250 3300026067 Ga0207678_10000109 Ga0207678_1000010921 517
251 3300026142 Ga0207698_10008573 Ga0207698_100085731 517
252 3300027111 Ga0209281_1000023 Ga0209281_1000023386 517
253 3300027312 Ga0209371_1000236 Ga0209371_100023643 517
254 3300030500 Ga0268256_1000220 Ga0268256_100022043 517
255 3300046515 Ga0495620_0034271 Ga0495620_0034271_28_1605 517
256 3300046520 Ga0495637_0023470 Ga0495637_0023470_38_1615 517
257 3300046692 Ga0495671_0002095 Ga0495671_0002095_10401_11978 517
258 3300053117 Ga0500593_008182 Ga0500593_008182_816_2393 517
259 3300053121 Ga0500607_009783 Ga0500607_009783_3359_4936 517
260 iso_pu_bacteria 2599185240 2599747989 517
261 iso_pu_bacteria 2599185355 2600210761 517
262 iso_pu_bacteria 2675903129 2676746235 517
263 iso_pu_bacteria 2945909444 2945913302 517
264 iso_pu_bacteria 2954767861 2954773003 517
265 iso_pu_bacteria 8020945358 8020947941 517

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF20629

GD_AH_C

D-galactarate/Altronate dehydratase, C-terminal

288

530

0.98

PF08666

SAF

SAF domain

29

99

0.92

PF04295

GD_AH_second

D-galactarate dehydratase/Altronate hydrolase, second domain

129

279

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
6u7l-assembly2.cif.gz_D 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. 0.9607 5 516
6u7l-assembly2.cif.gz_C 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. 0.9569 2 516
6u7l-assembly2.cif.gz_D 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. 0.9565 5 516
6u7l-assembly2.cif.gz_C 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. 0.9548 2 516
6u7l-assembly1.cif.gz_B 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. 0.9511 6 516
ID Description Score Start End Superfamily
af_P39829_14_92_2.30.130.110 Mainly Beta;Roll;Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4; 0.9964 6 84 2.30.130.110
af_P39829_14_92_2.30.130.110 Mainly Beta;Roll;Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4; 0.984 6 84 2.30.130.110
3k3sD01 Mainly Beta;Roll;Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4; 0.8865 6 87 2.30.130.110
3k3sD01 Mainly Beta;Roll;Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4; 0.8662 6 87 2.30.130.110
3cijB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.7717 127 163 3.40.190.10
ID Description Score Start End GO Terms
AF-A0A4Q3LX19-F1-model_v4 Galactarate dehydratase (EC 4.2.1.42) 0.992 381 516 GO:0008867
GO:0019698
GO:0046392
AF-A0A519HGL9-F1-model_v4 Galactarate dehydratase (EC 4.2.1.42) 0.9918 418 516 GO:0008867
GO:0019698
GO:0046392
AF-A0A822TK76-F1-model_v4 deleted 0.9912 421 516
AF-A0A377LIN9-F1-model_v4 deleted 0.9895 373 501
AF-W1F389-F1-model_v4 D-galactarate dehydratase (EC 4.2.1.42) 0.9884 373 516 GO:0008867
GO:0019698
GO:0046392

Feature Viewer

pLDDT pTM Quality
90.21 0.91 High
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Predicted Structure (AlphaFold2)

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