F372785

General Info

Members Datasets Scaffolds Average Seq Length
264 160 264 215

Family's Representative Sequence

Representative Sequence 3300044658|Ga0466972_0085850|Ga0466972_0085850_731_1450
Length 239
Sequence MVSETASSLQPIRVLLADDHDLLRQGLTLLLGLQPEIQVVGEARTGREAVTQVEHLAPDVVVMDISMPDMDGLEACRTIRAQNPTTNVLILTMHDSEGYFLQALRAGAAGYVVKKAAPTELQAAISAVAQGGVFLYPGLARALVHAYLAQLSPSSSPSQAKVQEGSNLAQELKVLTPRELEVVTLVAEGYTNQAIADRLILSIKTVQSHRANVMEKLGLRDITHLVRFALRHGLIDAEP

Samples

Sample ID Description Type Environment
1 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
2 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
3 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
4 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
9 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
10 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
11 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
12 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
13 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
14 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
15 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
16 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
17 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
18 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
19 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
20 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
21 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
22 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
23 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
24 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
25 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
26 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
27 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
28 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
29 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
30 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
31 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
32 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
33 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
34 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
35 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
36 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
37 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
38 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
39 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
40 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
45 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
47 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
48 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
49 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
50 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
51 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
54 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
55 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
56 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
57 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
58 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
59 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
60 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
61 3300020075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
62 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
63 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
64 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
65 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
66 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
67 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
68 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
71 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
73 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
74 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
76 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
105 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
106 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
107 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
108 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
109 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
110 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
111 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
112 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
113 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
114 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
115 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
116 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
117 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
118 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
119 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
120 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
121 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
122 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
123 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
124 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
125 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
126 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
127 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
128 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
129 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
130 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
131 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
132 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
133 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
134 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
135 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
136 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
137 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
138 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
139 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
140 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
141 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
142 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
143 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
144 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
145 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
146 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
147 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
148 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
149 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
150 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
151 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
152 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
153 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
154 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
155 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
156 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
157 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
158 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
159 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
160 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.86
Metatranscriptomes 1.14
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.44
Nodule 0
Rhizoplane 0.38
Rhizosphere 70.83
Stem 0
Stem Tuber 0
Unclassified 22.35

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25156J39149_1000292 3300002705 Bacteria 33804
2 JGI25154J39366_1001482 3300002738 Bacteria 8268
3 JGI25157J39369_1000326 3300002741 Bacteria 33818
4 rootH1_10010817 3300003316 Bacteria 3487
5 rootH1_10010818 3300003316 Bacteria 10274
6 rootH2_10021208 3300003320 Bacteria 12225
7 rootH2_10081610 3300003320 Bacteria 1734
8 rootL2_10038189 3300003322 Bacteria 5418
9 rootH1_10010501 3300003323 Bacteria 13370
10 rootH1_10044545 3300003323 Bacteria 13941
11 Ga0055539_1000042 3300003752 Bacteria 199725
12 Ga0055539_1000166 3300003752 Bacteria 59517
13 Ga0055533_1000006 3300003756 Bacteria 635559
14 Ga0055533_1000087 3300003756 Bacteria 122417
15 Ga0055525_1000591 3300003759 Bacteria 15709
16 Ga0055525_1000825 3300003759 Bacteria 9447
17 Ga0070683_100108246 3300005329 Bacteria 2621
18 Ga0070690_100162726 3300005330 Bacteria 1530
19 Ga0068869_100073051 3300005334 Bacteria 2543
20 Ga0070660_100111572 3300005339 Bacteria 2176
21 Ga0070669_100530794 3300005353 Bacteria 979
22 Ga0070669_100549920 3300005353 Bacteria 962
23 Ga0070675_100603791 3300005354 Unclassified 995
24 Ga0070674_100336473 3300005356 Bacteria 1215
25 Ga0070673_100048367 3300005364 Bacteria 3315
26 Ga0070659_100240994 3300005366 Bacteria 1497
27 Ga0070713_100014971 3300005436 Bacteria 5776
28 Ga0070711_100269630 3300005439 Unclassified 1342
29 Ga0070711_100458492 3300005439 Bacteria 1045
30 Ga0070663_100028016 3300005455 Bacteria 3831
31 Ga0070678_100699950 3300005456 Unclassified 913
32 Ga0070698_100758852 3300005471 Bacteria 913
33 Ga0070679_100712562 3300005530 Unclassified 946
34 Ga0068853_100117817 3300005539 Bacteria 2366
35 Ga0070695_100285179 3300005545 Bacteria 1215
36 Ga0070696_100049143 3300005546 Bacteria 2929
37 Ga0070665_100039060 3300005548 Bacteria 4773
38 Ga0070665_100363448 3300005548 Bacteria 1453
39 Ga0068855_100026634 3300005563 Bacteria 6918
40 Ga0068855_100636882 3300005563 Bacteria 1146
41 Ga0068857_100000085 3300005577 Bacteria 54135
42 Ga0068854_100010714 3300005578 Bacteria 5950
43 Ga0068856_100002506 3300005614 Bacteria 18902
44 Ga0068852_100182084 3300005616 Bacteria 1976
45 Ga0068852_101032218 3300005616 Unclassified 841
46 Ga0068861_100007161 3300005719 Bacteria 7636
47 Ga0068863_100124325 3300005841 Unclassified 2461
48 Ga0068863_100146220 3300005841 Unclassified 2261
49 Ga0068863_100221188 3300005841 Bacteria 1824
50 Ga0068862_100406706 3300005844 Unclassified 1274
51 Ga0070717_10018047 3300006028 Bacteria 5504
52 Ga0070717_10029309 3300006028 Bacteria 4414
53 Ga0070712_100016927 3300006175 Bacteria 4713
54 Ga0097621_100228757 3300006237 Bacteria 1623
55 Ga0097621_100471774 3300006237 Bacteria 1133
56 Ga0075435_100236640 3300007076 Bacteria 1552
57 Ga0105240_10000340 3300009093 Bacteria 87388
58 Ga0105240_10231602 3300009093 Bacteria 2146
59 Ga0105240_10280779 3300009093 Bacteria 1913
60 Ga0105240_10320246 3300009093 Unclassified 1768
61 Ga0111539_10428699 3300009094 Bacteria 1540
62 Ga0105245_10300012 3300009098 Unclassified 1576
63 Ga0105245_11433432 3300009098 Bacteria 741
64 Ga0114129_10416974 3300009147 Bacteria 1767
65 Ga0105241_10037222 3300009174 Bacteria 3665
66 Ga0105242_10271754 3300009176 Unclassified 1536
67 Ga0105248_10062161 3300009177 Bacteria 4194
68 Ga0105248_10289977 3300009177 Bacteria 1843
69 Ga0105237_10003370 3300009545 Bacteria 19015
70 Ga0105237_10036256 3300009545 Bacteria 4988
71 Ga0105238_10038632 3300009551 Bacteria 4847
72 Ga0105249_10014324 3300009553 Bacteria 7013
73 Ga0105239_10013591 3300010375 Bacteria 9037
74 Ga0105246_10329353 3300011119 Unclassified 1244
75 Ga0157369_10018724 3300013105 Bacteria 7765
76 Ga0163162_10280425 3300013306 Bacteria 1798
77 Ga0157375_10211170 3300013308 Bacteria 2098
78 Ga0163163_10008942 3300014325 Bacteria 8921
79 Ga0157380_10495621 3300014326 Bacteria 1185
80 Ga0157376_10334782 3300014969 Bacteria 1443
81 Ga0157376_10632305 3300014969 Bacteria 1069
82 Ga0182007_10068523 3300015262 Bacteria 1162
83 Ga0206349_1429557 3300020075 Unclassified 2051
84 Ga0206352_10153237 3300020078 Unclassified 2921
85 Ga0206350_10126355 3300020080 Unclassified 2429
86 Ga0213872_10001963 3300021361 Bacteria 12542
87 Ga0213876_10244039 3300021384 Bacteria 954
88 Ga0213875_10000005 3300021388 Bacteria 595146
89 Ga0213875_10003803 3300021388 Bacteria 8486
90 Ga0213875_10006380 3300021388 Bacteria 6205
91 Ga0213875_10008636 3300021388 Bacteria 5203
92 Ga0213875_10013107 3300021388 Bacteria 4078
93 Ga0213875_10014196 3300021388 Bacteria 3892
94 Ga0213875_10019335 3300021388 Bacteria 3276
95 Ga0213875_10034095 3300021388 Bacteria 2404
96 Ga0213875_10082157 3300021388 Bacteria 1503
97 Ga0213875_10136391 3300021388 Bacteria 1148
98 Ga0213875_10144739 3300021388 Unclassified 1113
99 Ga0213875_10249124 3300021388 Unclassified 837
100 Ga0213871_10000151 3300021441 Bacteria 7291
101 Ga0209674_100003 3300025226 Bacteria 2196646
102 Ga0209674_100088 3300025226 Bacteria 181554
103 Ga0209563_100010 3300025230 Bacteria 1337457
104 Ga0209563_100140 3300025230 Bacteria 81213
105 Ga0207427_100362 3300025231 Bacteria 28247
106 Ga0209258_100277 3300025242 Bacteria 86422
107 Ga0209646_1000039 3300025246 Bacteria 349637
108 Ga0209026_1000006 3300025250 Bacteria 677225
109 Ga0209677_100026 3300025253 Bacteria 382520
110 Ga0209677_100067 3300025253 Bacteria 146379
111 Ga0209677_100095 3300025253 Bacteria 100330
112 Ga0209677_100854 3300025253 Bacteria 15084
113 Ga0209759_1000189 3300025256 Bacteria 98732
114 Ga0209759_1006732 3300025256 Bacteria 3813
115 Ga0207695_10010792 3300025913 Bacteria 11141
116 Ga0207695_10012501 3300025913 Bacteria 10184
117 Ga0207695_10229222 3300025913 Unclassified 1763
118 Ga0207671_10071732 3300025914 Unclassified 2584
119 Ga0207693_10023686 3300025915 Bacteria 4872
120 Ga0207693_10057072 3300025915 Bacteria 3061
121 Ga0207663_10011094 3300025916 Bacteria 4825
122 Ga0207657_10165038 3300025919 Bacteria 1797
123 Ga0207652_10645691 3300025921 Unclassified 947
124 Ga0207681_10498394 3300025923 Bacteria 997
125 Ga0207681_10509583 3300025923 Bacteria 986
126 Ga0207694_10006732 3300025924 Bacteria 8729
127 Ga0207687_10397315 3300025927 Bacteria 1133
128 Ga0207700_10045376 3300025928 Bacteria 3242
129 Ga0207700_10225430 3300025928 Bacteria 1591
130 Ga0207700_10387781 3300025928 Bacteria 1222
131 Ga0207664_10188505 3300025929 Bacteria 1774
132 Ga0207690_10175994 3300025932 Bacteria 1607
133 Ga0207670_10165882 3300025936 Bacteria 1652
134 Ga0207711_10141199 3300025941 Bacteria 2167
135 Ga0207689_10111414 3300025942 Bacteria 2249
136 Ga0207667_10000868 3300025949 Bacteria 38878
137 Ga0207651_10029265 3300025960 Bacteria 3488
138 Ga0207651_10714556 3300025960 Bacteria 884
139 Ga0207640_10083263 3300025981 Bacteria 2193
140 Ga0207639_10094775 3300026041 Bacteria 2397
141 Ga0207678_10201017 3300026067 Bacteria 1704
142 Ga0207702_10000111 3300026078 Bacteria 95170
143 Ga0207641_10153018 3300026088 Unclassified 2090
144 Ga0207641_10168097 3300026088 Bacteria 1999
145 Ga0207676_11264843 3300026095 Bacteria 732
146 Ga0207674_10001263 3300026116 Bacteria 33047
147 Ga0207675_100010121 3300026118 Bacteria 8838
148 Ga0207698_10064559 3300026142 Bacteria 2870
149 Ga0207698_10458709 3300026142 Bacteria 1232
150 Ga0268266_10021635 3300028379 Bacteria 5479
151 Ga0268266_10242364 3300028379 Bacteria 1665
152 Ga0268264_10533271 3300028381 Bacteria 1149
153 Ga0265318_10155416 3300028577 Bacteria 839
154 Ga0265336_10004596 3300028666 Bacteria 5188
155 Ga0265338_10013427 3300028800 Bacteria 9253
156 Ga0265338_10176229 3300028800 Bacteria 1634
157 Ga0265338_10624412 3300028800 Unclassified 749
158 Ga0265332_10036599 3300031238 Bacteria 2131
159 Ga0265328_10049836 3300031239 Bacteria 1537
160 Ga0265320_10001591 3300031240 Bacteria 16285
161 Ga0265325_10210058 3300031241 Bacteria 894
162 Ga0265329_10026248 3300031242 Bacteria 1921
163 Ga0265340_10152359 3300031247 Bacteria 1053
164 Ga0265331_10014456 3300031250 Bacteria 4204
165 Ga0265316_10006131 3300031344 Bacteria 11533
166 Ga0265316_10024628 3300031344 Bacteria 5036
167 Ga0265316_10071133 3300031344 Bacteria 2682
168 Ga0265316_10342724 3300031344 Bacteria 1083
169 Ga0265316_10358506 3300031344 Bacteria 1055
170 Ga0265313_10000927 3300031595 Bacteria 29203
171 Ga0265314_10002640 3300031711 Bacteria 18040
172 Ga0265314_10017103 3300031711 Bacteria 5701
173 Ga0265314_10031973 3300031711 Bacteria 3878
174 Ga0265314_10286120 3300031711 Bacteria 930
175 Ga0265314_10419153 3300031711 Bacteria 720
176 Ga0373926_0013406 3300035083 Bacteria 2780
177 Ga0373934_0012692 3300035086 Bacteria 3180
178 Ga0373945_0161370 3300035116 Unclassified 914
179 Ga0373954_0161524 3300035118 Unclassified 1096
180 Ga0373943_0194981 3300035170 Bacteria 1119
181 Ga0373931_0001565 3300035691 Bacteria 9877
182 Ga0373935_0093709 3300035692 Unclassified 1970
183 Ga0373927_0000304 3300035695 Bacteria 38764
184 Ga0373927_0185003 3300035695 Bacteria 1367
185 Ga0373933_0207498 3300035724 Unclassified 1255
186 Ga0373947_0070718 3300035725 Unclassified 2139
187 Ga0373937_0005919 3300036401 Bacteria 10520
188 Ga0373925_0360486 3300037068 Bacteria 1182
189 Ga0395898_0158562 3300037466 Bacteria 2164
190 Ga0436364_0020202 3300037853 Unclassified 3863
191 Ga0436364_0157811 3300037853 Bacteria 430293
192 Ga0436364_0166000 3300037853 Bacteria 2370
193 Ga0436364_0319475 3300037853 Unclassified 1097
194 Ga0436364_0336516 3300037853 Bacteria 6720
195 Ga0436364_0370501 3300037853 Bacteria 1446
196 Ga0436364_0374410 3300037853 Plasmid 3538
197 Ga0436364_0390059 3300037853 Bacteria 11513
198 Ga0436364_0418026 3300037853 Bacteria 4516
199 Ga0436364_0426998 3300037853 Bacteria 1864
200 Ga0436364_0510106 3300037853 Bacteria 33937
201 Ga0436364_0642710 3300037853 Bacteria 1761
202 Ga0436364_0795598 3300037853 Unclassified 2251
203 Ga0436364_0868445 3300037853 Unclassified 764
204 Ga0436364_0872384 3300037853 Bacteria 1514
205 Ga0436364_0877566 3300037853 Bacteria 12351
206 Ga0436364_0897077 3300037853 Bacteria 7712
207 Ga0436364_0900930 3300037853 Bacteria 24077
208 Ga0436364_1046229 3300037853 Bacteria 1455
209 Ga0436364_1074512 3300037853 Unclassified 1558
210 Ga0436364_1432083 3300037853 Bacteria 4310
211 Ga0436364_1450580 3300037853 Unclassified 2268
212 Ga0395901_0331429 3300038443 Bacteria 1573
213 Ga0436365_0594622 3300039437 Bacteria 2887
214 Ga0436365_0856094 3300039437 Unclassified 1707
215 Ga0436365_0898074 3300039437 Bacteria 1578
216 Ga0436365_1232900 3300039437 Unclassified 2261
217 Ga0436365_1570701 3300039437 Bacteria 7951
218 Ga0436365_1674653 3300039437 Bacteria 2454
219 Ga0436360_0166985 3300039438 Bacteria 1011
220 Ga0436360_0649125 3300039438 Bacteria 9473
221 Ga0436360_0918333 3300039438 Bacteria 1246
222 Ga0436361_0306406 3300039447 Bacteria 2238
223 Ga0436361_0793152 3300039447 Bacteria 90360
224 Ga0436363_0208312 3300039450 Bacteria 1072
225 Ga0436363_0465776 3300039450 Bacteria 8300
226 Ga0436363_0926901 3300039450 Bacteria 1014
227 Ga0436363_1644336 3300039450 Bacteria 6170
228 Ga0436362_0719437 3300039453 Bacteria 3291
229 Ga0436362_0947417 3300039453 Bacteria 845
230 Ga0451577_0620455 3300042876 Bacteria 981
231 Ga0451577_0832787 3300042876 Bacteria 833
232 Ga0466969_0000049 3300044656 Bacteria 63388
233 Ga0466969_0009396 3300044656 Bacteria 5182
234 Ga0466972_0078991 3300044658 Unclassified 1567
235 Ga0466972_0085850 3300044658 Bacteria 1496
236 Ga0466965_0000524 3300044683 Bacteria 13742
237 Ga0466966_0000255 3300044684 Bacteria 35347
238 Ga0466966_0011174 3300044684 Bacteria 5955
239 Ga0466961_0027697 3300044693 Bacteria 3645
240 Ga0466964_0001705 3300044706 Bacteria 7603
241 Ga0453684_1182462 3300044712 Bacteria 804
242 Ga0466971_0016575 3300044719 Bacteria 3253
243 Ga0466968_0000833 3300044735 Bacteria 10743
244 Ga0466968_0034548 3300044735 Bacteria 2110
245 Ga0466970_0001103 3300044765 Bacteria 13072
246 Ga0466970_0341055 3300044765 Unclassified 849
247 Ga0466957_0005298 3300044842 Bacteria 7229
248 Ga0466957_0223481 3300044842 Unclassified 1244
249 Ga0466959_0017170 3300045049 Bacteria 5299
250 Ga0466959_0018700 3300045049 Bacteria 5089
251 Ga0466959_0072061 3300045049 Unclassified 2501
252 Ga0451576_0035010 3300045051 Bacteria 5330
253 Ga0466967_0269470 3300045976 Bacteria 1631
254 Ga0466967_0643632 3300045976 Bacteria 1048
255 Ga0495580_0074030 3300046472 Bacteria 2378
256 Ga0495580_0240064 3300046472 Unclassified 1243
257 Ga0495645_0109483 3300046543 Bacteria 1956
258 Ga0495604_0139565 3300047317 Bacteria 1733
259 Ga0495615_0013111 3300048090 Bacteria 1725
260 Ga0496104_0421246 3300048907 Bacteria 1247
261 nmdc:mga06r32_78731_c1 3300050510 Unclassified 3204
262 Ga0495601_0334272 3300053077 Bacteria 986
263 Ga0500568_0000795 3300053139 Bacteria 22268
264 Ga0466962_0008832 3300061719 Bacteria 4829

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300005841 Ga0068863_100221188 Ga0068863_1002211882 189
2 3300005353 Ga0070669_100549920 Ga0070669_1005499202 190
3 3300005456 Ga0070678_100699950 Ga0070678_1006999502 190
4 3300005530 Ga0070679_100712562 Ga0070679_1007125622 190
5 3300005545 Ga0070695_100285179 Ga0070695_1002851792 190
6 3300005546 Ga0070696_100049143 Ga0070696_1000491432 190
7 3300006237 Ga0097621_100228757 Ga0097621_1002287572 190
8 3300009147 Ga0114129_10416974 Ga0114129_104169742 190
9 3300025913 Ga0207695_10012501 Ga0207695_1001250110 190
10 3300031711 Ga0265314_10017103 Ga0265314_100171032 190
11 3300026067 Ga0207678_10201017 Ga0207678_102010172 196
12 3300009545 Ga0105237_10003370 Ga0105237_1000337010 197
13 3300025914 Ga0207671_10071732 Ga0207671_100717322 197
14 3300025921 Ga0207652_10645691 Ga0207652_106456912 197
15 3300037853 Ga0436364_0510106 Ga0436364_0510106_9616_10230 203
16 3300039437 Ga0436365_0856094 Ga0436365_0856094_839_1453 203
17 3300048090 Ga0495615_0013111 Ga0495615_0013111_660_1301 203
18 3300009174 Ga0105241_10037222 Ga0105241_100372223 204
19 3300014326 Ga0157380_10495621 Ga0157380_104956212 204
20 3300037853 Ga0436364_1450580 Ga0436364_1450580_1291_1908 204
21 3300039437 Ga0436365_1232900 Ga0436365_1232900_699_1316 204
22 3300005439 Ga0070711_100269630 Ga0070711_1002696302 205
23 3300006175 Ga0070712_100016927 Ga0070712_1000169276 205
24 3300025915 Ga0207693_10023686 Ga0207693_100236862 205
25 3300025915 Ga0207693_10057072 Ga0207693_100570722 205
26 3300025916 Ga0207663_10011094 Ga0207663_100110942 205
27 3300005436 Ga0070713_100014971 Ga0070713_1000149714 208
28 3300005439 Ga0070711_100458492 Ga0070711_1004584922 208
29 3300005471 Ga0070698_100758852 Ga0070698_1007588522 208
30 3300005841 Ga0068863_100124325 Ga0068863_1001243252 208
31 3300006028 Ga0070717_10018047 Ga0070717_100180471 208
32 3300006028 Ga0070717_10029309 Ga0070717_100293094 208
33 3300009093 Ga0105240_10000340 Ga0105240_1000034076 208
34 3300009098 Ga0105245_10300012 Ga0105245_103000121 208
35 3300009553 Ga0105249_10014324 Ga0105249_100143243 208
36 3300021388 Ga0213875_10003803 Ga0213875_100038036 208
37 3300021388 Ga0213875_10014196 Ga0213875_100141965 208
38 3300021388 Ga0213875_10144739 Ga0213875_101447392 208
39 3300025928 Ga0207700_10045376 Ga0207700_100453762 208
40 3300025929 Ga0207664_10188505 Ga0207664_101885053 208
41 3300026088 Ga0207641_10153018 Ga0207641_101530182 208
42 3300028800 Ga0265338_10176229 Ga0265338_101762292 208
43 3300031238 Ga0265332_10036599 Ga0265332_100365992 208
44 3300035083 Ga0373926_0013406 Ga0373926_0013406_1623_2252 208
45 3300035118 Ga0373954_0161524 Ga0373954_0161524_136_765 208
46 3300035695 Ga0373927_0000304 Ga0373927_0000304_6772_7401 208
47 3300035724 Ga0373933_0207498 Ga0373933_0207498_137_766 208
48 3300036401 Ga0373937_0005919 Ga0373937_0005919_6395_7024 208
49 3300037853 Ga0436364_0390059 Ga0436364_0390059_9033_9662 208
50 3300037853 Ga0436364_0642710 Ga0436364_0642710_694_1323 208
51 3300037853 Ga0436364_0897077 Ga0436364_0897077_3475_4104 208
52 3300039437 Ga0436365_0594622 Ga0436365_0594622_508_1137 208
53 3300039450 Ga0436363_0465776 Ga0436363_0465776_5714_6343 208
54 3300039453 Ga0436362_0719437 Ga0436362_0719437_1510_2139 208
55 3300045976 Ga0466967_0643632 Ga0466967_0643632_190_819 208
56 3300046472 Ga0495580_0074030 Ga0495580_0074030_930_1559 208
57 3300005353 Ga0070669_100530794 Ga0070669_1005307942 210
58 3300005354 Ga0070675_100603791 Ga0070675_1006037911 210
59 3300005841 Ga0068863_100146220 Ga0068863_1001462202 210
60 3300006237 Ga0097621_100471774 Ga0097621_1004717742 210
61 3300009098 Ga0105245_11433432 Ga0105245_114334321 210
62 3300009177 Ga0105248_10062161 Ga0105248_100621612 210
63 3300009177 Ga0105248_10289977 Ga0105248_102899772 210
64 3300011119 Ga0105246_10329353 Ga0105246_103293531 210
65 3300013306 Ga0163162_10280425 Ga0163162_102804253 210
66 3300013308 Ga0157375_10211170 Ga0157375_102111702 210
67 3300014325 Ga0163163_10008942 Ga0163163_1000894210 210
68 3300014969 Ga0157376_10334782 Ga0157376_103347822 210
69 3300014969 Ga0157376_10632305 Ga0157376_106323051 210
70 3300025923 Ga0207681_10509583 Ga0207681_105095831 210
71 3300025928 Ga0207700_10387781 Ga0207700_103877811 210
72 3300025936 Ga0207670_10165882 Ga0207670_101658822 210
73 3300025941 Ga0207711_10141199 Ga0207711_101411992 210
74 3300025960 Ga0207651_10714556 Ga0207651_107145561 210
75 3300026088 Ga0207641_10168097 Ga0207641_101680972 210
76 3300026095 Ga0207676_11264843 Ga0207676_112648431 210
77 3300026142 Ga0207698_10458709 Ga0207698_104587092 210
78 3300028379 Ga0268266_10242364 Ga0268266_102423642 210
79 3300028381 Ga0268264_10533271 Ga0268264_105332711 210
80 3300031344 Ga0265316_10071133 Ga0265316_100711333 210
81 3300031344 Ga0265316_10342724 Ga0265316_103427241 210
82 3300031711 Ga0265314_10286120 Ga0265314_102861202 210
83 3300031711 Ga0265314_10419153 Ga0265314_104191531 210
84 3300035116 Ga0373945_0161370 Ga0373945_0161370_180_815 210
85 3300035170 Ga0373943_0194981 Ga0373943_0194981_387_1022 210
86 3300035695 Ga0373927_0185003 Ga0373927_0185003_693_1328 210
87 3300037068 Ga0373925_0360486 Ga0373925_0360486_521_1156 210
88 3300037853 Ga0436364_0374410 Ga0436364_0374410_1371_2006 210
89 3300039453 Ga0436362_0947417 Ga0436362_0947417_147_782 210
90 3300042876 Ga0451577_0620455 Ga0451577_0620455_131_766 210
91 3300045051 Ga0451576_0035010 Ga0451576_0035010_2461_3096 210
92 3300046472 Ga0495580_0240064 Ga0495580_0240064_24_659 210
93 3300046543 Ga0495645_0109483 Ga0495645_0109483_191_826 210
94 3300047317 Ga0495604_0139565 Ga0495604_0139565_271_906 210
95 3300007076 Ga0075435_100236640 Ga0075435_1002366402 211
96 3300009176 Ga0105242_10271754 Ga0105242_102717541 211
97 3300028577 Ga0265318_10155416 Ga0265318_101554162 211
98 3300028666 Ga0265336_10004596 Ga0265336_100045963 211
99 3300028800 Ga0265338_10013427 Ga0265338_100134273 211
100 3300028800 Ga0265338_10624412 Ga0265338_106244121 211
101 3300031239 Ga0265328_10049836 Ga0265328_100498362 211
102 3300031240 Ga0265320_10001591 Ga0265320_100015913 211
103 3300031241 Ga0265325_10210058 Ga0265325_102100581 211
104 3300031242 Ga0265329_10026248 Ga0265329_100262482 211
105 3300031247 Ga0265340_10152359 Ga0265340_101523592 211
106 3300031250 Ga0265331_10014456 Ga0265331_100144563 211
107 3300031344 Ga0265316_10006131 Ga0265316_1000613111 211
108 3300031344 Ga0265316_10024628 Ga0265316_100246284 211
109 3300031711 Ga0265314_10031973 Ga0265314_100319734 211
110 3300050510 nmdc:mga06r32_78731_c1 nmdc:mga06r32_78731_c1_1229_1867 211
111 3300005455 Ga0070663_100028016 Ga0070663_1000280163 212
112 3300005548 Ga0070665_100039060 Ga0070665_1000390602 212
113 3300005616 Ga0068852_101032218 Ga0068852_1010322181 212
114 3300005844 Ga0068862_100406706 Ga0068862_1004067062 212
115 3300009094 Ga0111539_10428699 Ga0111539_104286992 212
116 3300021361 Ga0213872_10001963 Ga0213872_100019632 212
117 3300021384 Ga0213876_10244039 Ga0213876_102440391 212
118 3300021388 Ga0213875_10000005 Ga0213875_10000005163 212
119 3300021388 Ga0213875_10006380 Ga0213875_100063806 212
120 3300021388 Ga0213875_10008636 Ga0213875_100086362 212
121 3300021388 Ga0213875_10013107 Ga0213875_100131072 212
122 3300021388 Ga0213875_10019335 Ga0213875_100193352 212
123 3300021388 Ga0213875_10034095 Ga0213875_100340953 212
124 3300021388 Ga0213875_10082157 Ga0213875_100821572 212
125 3300021388 Ga0213875_10136391 Ga0213875_101363912 212
126 3300021388 Ga0213875_10249124 Ga0213875_102491241 212
127 3300021441 Ga0213871_10000151 Ga0213871_100001518 212
128 3300025242 Ga0209258_100277 Ga0209258_10027723 212
129 3300025923 Ga0207681_10498394 Ga0207681_104983941 212
130 3300025927 Ga0207687_10397315 Ga0207687_103973152 212
131 3300025928 Ga0207700_10225430 Ga0207700_102254302 212
132 3300028379 Ga0268266_10021635 Ga0268266_100216356 212
133 3300031344 Ga0265316_10358506 Ga0265316_103585061 212
134 3300035692 Ga0373935_0093709 Ga0373935_0093709_10_651 212
135 3300035725 Ga0373947_0070718 Ga0373947_0070718_582_1223 212
136 3300037853 Ga0436364_0020202 Ga0436364_0020202_1205_1846 212
137 3300037853 Ga0436364_0157811 Ga0436364_0157811_401971_402612 212
138 3300037853 Ga0436364_0166000 Ga0436364_0166000_68_709 212
139 3300037853 Ga0436364_0319475 Ga0436364_0319475_201_842 212
140 3300037853 Ga0436364_0336516 Ga0436364_0336516_3577_4218 212
141 3300037853 Ga0436364_0370501 Ga0436364_0370501_460_1101 212
142 3300037853 Ga0436364_0418026 Ga0436364_0418026_1749_2390 212
143 3300037853 Ga0436364_0426998 Ga0436364_0426998_283_924 212
144 3300037853 Ga0436364_0795598 Ga0436364_0795598_961_1602 212
145 3300037853 Ga0436364_0868445 Ga0436364_0868445_45_746 212
146 3300037853 Ga0436364_0872384 Ga0436364_0872384_226_867 212
147 3300037853 Ga0436364_0877566 Ga0436364_0877566_3929_4570 212
148 3300037853 Ga0436364_0900930 Ga0436364_0900930_8262_8903 212
149 3300037853 Ga0436364_1046229 Ga0436364_1046229_459_1100 212
150 3300037853 Ga0436364_1074512 Ga0436364_1074512_333_974 212
151 3300037853 Ga0436364_1432083 Ga0436364_1432083_1951_2592 212
152 3300039437 Ga0436365_0898074 Ga0436365_0898074_108_749 212
153 3300039437 Ga0436365_1674653 Ga0436365_1674653_1711_2352 212
154 3300039438 Ga0436360_0649125 Ga0436360_0649125_6961_7602 212
155 3300039438 Ga0436360_0918333 Ga0436360_0918333_434_1075 212
156 3300039447 Ga0436361_0306406 Ga0436361_0306406_1440_2081 212
157 3300039447 Ga0436361_0793152 Ga0436361_0793152_85092_85733 212
158 3300039450 Ga0436363_0208312 Ga0436363_0208312_397_1038 212
159 3300039450 Ga0436363_1644336 Ga0436363_1644336_5101_5742 212
160 3300042876 Ga0451577_0832787 Ga0451577_0832787_138_779 212
161 3300044712 Ga0453684_1182462 Ga0453684_1182462_143_784 212
162 3300048907 Ga0496104_0421246 Ga0496104_0421246_428_1069 212
163 3300053077 Ga0495601_0334272 Ga0495601_0334272_46_687 212
164 3300053139 Ga0500568_0000795 Ga0500568_0000795_13747_14388 212
165 3300005356 Ga0070674_100336473 Ga0070674_1003364732 213
166 3300005548 Ga0070665_100363448 Ga0070665_1003634482 213
167 3300020075 Ga0206349_1429557 Ga0206349_14295572 215
168 3300020078 Ga0206352_10153237 Ga0206352_101532372 215
169 3300020080 Ga0206350_10126355 Ga0206350_101263552 215
170 3300039450 Ga0436363_0926901 Ga0436363_0926901_130_846 215
171 3300003322 rootL2_10038189 rootL2_100381897 216
172 3300031595 Ga0265313_10000927 Ga0265313_1000092713 216
173 3300031711 Ga0265314_10002640 Ga0265314_100026406 216
174 3300039437 Ga0436365_1570701 Ga0436365_1570701_2043_2699 217
175 3300039438 Ga0436360_0166985 Ga0436360_0166985_277_933 217
176 3300044656 Ga0466969_0000049 Ga0466969_0000049_58787_59503 217
177 3300044658 Ga0466972_0078991 Ga0466972_0078991_274_987 217
178 3300044658 Ga0466972_0085850 Ga0466972_0085850_731_1450 217
179 3300044684 Ga0466966_0000255 Ga0466966_0000255_25061_25777 217
180 3300044706 Ga0466964_0001705 Ga0466964_0001705_6016_6732 217
181 3300044735 Ga0466968_0000833 Ga0466968_0000833_9186_9902 217
182 3300044765 Ga0466970_0001103 Ga0466970_0001103_7997_8713 217
183 3300044765 Ga0466970_0341055 Ga0466970_0341055_68_781 217
184 3300045049 Ga0466959_0018700 Ga0466959_0018700_848_1564 217
185 3300045049 Ga0466959_0072061 Ga0466959_0072061_371_1084 217
186 3300045976 Ga0466967_0269470 Ga0466967_0269470_507_1160 217
187 3300025256 Ga0209759_1006732 Ga0209759_10067322 218
188 3300035691 Ga0373931_0001565 Ga0373931_0001565_7310_7966 218
189 3300044656 Ga0466969_0009396 Ga0466969_0009396_4023_4679 218
190 3300044683 Ga0466965_0000524 Ga0466965_0000524_292_948 218
191 3300044684 Ga0466966_0011174 Ga0466966_0011174_469_1125 218
192 3300044693 Ga0466961_0027697 Ga0466961_0027697_165_821 218
193 3300044719 Ga0466971_0016575 Ga0466971_0016575_1285_1941 218
194 3300044735 Ga0466968_0034548 Ga0466968_0034548_962_1618 218
195 3300044842 Ga0466957_0005298 Ga0466957_0005298_486_1142 218
196 3300045049 Ga0466959_0017170 Ga0466959_0017170_4141_4797 218
197 3300061719 Ga0466962_0008832 Ga0466962_0008832_3407_4063 218
198 3300002705 JGI25156J39149_1000292 JGI25156J39149_100029211 219
199 3300002738 JGI25154J39366_1001482 JGI25154J39366_10014822 219
200 3300002741 JGI25157J39369_1000326 JGI25157J39369_100032611 219
201 3300003316 rootH1_10010817 rootH1_100108172 219
202 3300003316 rootH1_10010818 rootH1_100108182 219
203 3300003320 rootH2_10021208 rootH2_1002120812 219
204 3300003320 rootH2_10081610 rootH2_100816102 219
205 3300003323 rootH1_10010501 rootH1_100105016 219
206 3300003323 rootH1_10044545 rootH1_1004454510 219
207 3300003752 Ga0055539_1000042 Ga0055539_100004245 219
208 3300003752 Ga0055539_1000166 Ga0055539_100016627 219
209 3300003756 Ga0055533_1000006 Ga0055533_1000006218 219
210 3300003756 Ga0055533_1000087 Ga0055533_100008794 219
211 3300003759 Ga0055525_1000591 Ga0055525_10005918 219
212 3300003759 Ga0055525_1000825 Ga0055525_10008258 219
213 3300005329 Ga0070683_100108246 Ga0070683_1001082462 219
214 3300005330 Ga0070690_100162726 Ga0070690_1001627262 219
215 3300005334 Ga0068869_100073051 Ga0068869_1000730513 219
216 3300005339 Ga0070660_100111572 Ga0070660_1001115722 219
217 3300005364 Ga0070673_100048367 Ga0070673_1000483672 219
218 3300005366 Ga0070659_100240994 Ga0070659_1002409942 219
219 3300005539 Ga0068853_100117817 Ga0068853_1001178172 219
220 3300005563 Ga0068855_100026634 Ga0068855_1000266346 219
221 3300005563 Ga0068855_100636882 Ga0068855_1006368822 219
222 3300005577 Ga0068857_100000085 Ga0068857_10000008514 219
223 3300005578 Ga0068854_100010714 Ga0068854_1000107144 219
224 3300005614 Ga0068856_100002506 Ga0068856_10000250610 219
225 3300005616 Ga0068852_100182084 Ga0068852_1001820842 219
226 3300005719 Ga0068861_100007161 Ga0068861_1000071612 219
227 3300009093 Ga0105240_10231602 Ga0105240_102316022 219
228 3300009093 Ga0105240_10280779 Ga0105240_102807794 219
229 3300009093 Ga0105240_10320246 Ga0105240_103202462 219
230 3300009545 Ga0105237_10036256 Ga0105237_100362566 219
231 3300009551 Ga0105238_10038632 Ga0105238_100386322 219
232 3300010375 Ga0105239_10013591 Ga0105239_100135912 219
233 3300013105 Ga0157369_10018724 Ga0157369_100187243 219
234 3300015262 Ga0182007_10068523 Ga0182007_100685232 219
235 3300025226 Ga0209674_100003 Ga0209674_1000031119 219
236 3300025226 Ga0209674_100088 Ga0209674_10008880 219
237 3300025230 Ga0209563_100010 Ga0209563_100010847 219
238 3300025230 Ga0209563_100140 Ga0209563_10014028 219
239 3300025231 Ga0207427_100362 Ga0207427_1003623 219
240 3300025246 Ga0209646_1000039 Ga0209646_1000039271 219
241 3300025250 Ga0209026_1000006 Ga0209026_1000006330 219
242 3300025253 Ga0209677_100026 Ga0209677_10002688 219
243 3300025253 Ga0209677_100067 Ga0209677_10006745 219
244 3300025253 Ga0209677_100095 Ga0209677_10009570 219
245 3300025253 Ga0209677_100854 Ga0209677_1008548 219
246 3300025256 Ga0209759_1000189 Ga0209759_100018971 219
247 3300025913 Ga0207695_10010792 Ga0207695_1001079211 219
248 3300025913 Ga0207695_10229222 Ga0207695_102292222 219
249 3300025919 Ga0207657_10165038 Ga0207657_101650382 219
250 3300025924 Ga0207694_10006732 Ga0207694_100067324 219
251 3300025932 Ga0207690_10175994 Ga0207690_101759942 219
252 3300025942 Ga0207689_10111414 Ga0207689_101114142 219
253 3300025949 Ga0207667_10000868 Ga0207667_1000086810 219
254 3300025960 Ga0207651_10029265 Ga0207651_100292655 219
255 3300025981 Ga0207640_10083263 Ga0207640_100832633 219
256 3300026041 Ga0207639_10094775 Ga0207639_100947752 219
257 3300026078 Ga0207702_10000111 Ga0207702_1000011126 219
258 3300026116 Ga0207674_10001263 Ga0207674_1000126312 219
259 3300026118 Ga0207675_100010121 Ga0207675_1000101213 219
260 3300026142 Ga0207698_10064559 Ga0207698_100645592 219
261 3300035086 Ga0373934_0012692 Ga0373934_0012692_1689_2348 219
262 3300037466 Ga0395898_0158562 Ga0395898_0158562_1075_1734 219
263 3300038443 Ga0395901_0331429 Ga0395901_0331429_384_1043 219
264 3300044842 Ga0466957_0223481 Ga0466957_0223481_60_719 219

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

14

126

0.98

PF00196

GerE

Bacterial regulatory proteins, luxR family

173

229

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
6ugl-assembly1.cif.gz_A vqma bound to dpo 0.956 157 216
4wsz-assembly1.cif.gz_B crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9514 154 218
6kju-assembly1.cif.gz_B huge conformation shift of vibrio cholerae vqma dimer in the absence of target dna provides insight into dna-binding mechanisms of luxr-type receptors 0.948 157 213
4wul-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.9477 156 218
4wsz-assembly1.cif.gz_A crystal structure of the dna binding domains of wild type liar from e. faecalis 0.947 154 218
ID Description Score Start End Superfamily
1yioA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9774 157 214 1.10.10.10
1zn2A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9741 157 214 1.10.10.10
af_P52106_149_214_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9516 157 214 1.10.10.10
3ulqB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9459 158 213 1.10.10.10
1yioA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9456 157 214 1.10.10.10
ID Description Score Start End GO Terms
AF-K9XT20-F1-model_v4 Response regulator receiver protein 0.9597 10 141 GO:0000160
GO:0016020
AF-G2DAP2-F1-model_v4 Transcriptional regulatory protein degU 0.956 9 145 GO:0000160
GO:0003677
AF-A0A4Q3SH94-F1-model_v4 Response regulator transcription factor 0.9539 9 145 GO:0000160
GO:0003677
AF-A0A7Y0NXH8-F1-model_v4 deleted 0.9519 9 147
AF-A0A7C8EE14-F1-model_v4 Response regulator transcription factor 0.9516 10 145 GO:0000160
GO:0003677

Feature Viewer

pLDDT pTM Quality
90.04 0.65 Medium
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Predicted Structure (AlphaFold2)

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