F369810

General Info

Members Datasets Scaffolds Average Seq Length
260 201 518 342

Family's Representative Sequence

Representative Sequence 3300046522|Ga0495643_0023751|Ga0495643_0023751_709_1875
Length 388
Sequence VLDYIERFSYVRRRHSTIGYISPVQFENLLAFQKVKSLSRYNVEMKCKRSSDDRKLDHHTLQVIRQQAVKAVREGQSVANVAAAYGLSIRTIFSWLAKFADGGQNALLAKPISDHPPKISADEMRWIAQAVRDNSPQQFKFEFGLWTLSLIGELIKRQFGKSLALASLSRVMKLLGFSVQKPLYQARQQDAKLVQQWEAETYPAIKAQVLAEGATIYFADEAGIRSDYHTGTTWAPVGETPVVTVTGRRFSFNMISAVSPRGDFRFMIHEGSVTSATFKEFLTRLMIGATKPVFVVVDDHPIHKSKLVKDYVALLDSQLKLFYLPPYSPQLNPDEQVWAHFNRQVSRRLVQNSDDMKKLALGALRRIQKLPELVKSFFRQPECQYAAQ

Samples

Sample ID Description Type Environment
1 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
2 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
3 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
4 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
5 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
6 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
9 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
10 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
11 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
12 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
13 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
14 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
15 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
16 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
17 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
18 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
19 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
20 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
21 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
22 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
23 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
24 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
25 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
26 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
27 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
28 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
29 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
30 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
31 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
32 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
33 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
34 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
35 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
36 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
37 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
38 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
39 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
40 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
41 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
42 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
43 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
44 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
45 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
46 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
47 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
48 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
49 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
50 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
51 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
52 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
53 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
54 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
55 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
56 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
57 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
58 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
59 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
60 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
61 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
62 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
63 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
64 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
65 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
66 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
67 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
68 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
69 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
70 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
71 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
72 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
73 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
75 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
76 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
79 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
108 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
109 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
110 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
111 3300031018 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
112 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
113 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
114 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
115 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
116 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
117 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
118 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
119 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
120 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
121 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
122 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
123 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
124 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
125 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
126 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
127 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
128 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
129 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
130 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
131 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
132 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
133 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
134 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
135 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
136 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
137 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
138 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
139 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
140 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
141 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
142 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
143 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
144 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
145 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
146 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
147 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
148 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
149 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
150 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
151 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
152 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
153 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
154 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
155 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
156 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
157 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
158 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
159 3300042147 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_080116_2618 Metagenome Rhizosphere
160 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
161 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
162 3300044662 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA4E Metagenome Unclassified
163 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
164 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
165 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
166 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
167 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
168 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
169 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
170 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
171 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
172 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
173 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
174 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
175 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
176 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
177 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
178 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
179 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
180 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
181 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
182 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
183 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
184 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
185 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
186 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
187 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
188 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
189 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
190 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
191 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
192 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
193 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
194 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
195 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
196 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
197 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
198 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
199 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
200 2816332286 Burkholderia vietnamiensis HI2221 Isolate Rhizosphere
201 2894510363 Methylomonas sp. Kb3 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.85
Metatranscriptomes 5.38
Isolates 0.77

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5
Nodule 0
Rhizoplane 1.15
Rhizosphere 88.46
Stem 0
Stem Tuber 0
Unclassified 38.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495643_0023751 3300046522 Bacteria 3482
2 JGI25162J39368_1000816 3300002737 Bacteria 20558
3 JGI25164J39214_1000004 3300002772 Bacteria 350814
4 JGI25406J46586_10028340 3300003203 Bacteria 2135
5 JGI25165J46597_1000110 3300003214 Bacteria 148234
6 rootH1_10175379 3300003316 Bacteria 1550
7 rootH2_10248051 3300003320 Bacteria 1148
8 Ga0055535_1001414 3300003761 Bacteria 12316
9 Ga0055542_1001579 3300003762 Bacteria 10598
10 Ga0055529_1000092 3300003763 Bacteria 137763
11 Ga0070658_10035573 3300005327 Bacteria 4012
12 Ga0070690_100237979 3300005330 Unclassified 1283
13 Ga0070670_100219768 3300005331 Unclassified 1653
14 Ga0070666_10144756 3300005335 Unclassified 1656
15 Ga0070682_100242501 3300005337 Unclassified 1294
16 Ga0068868_100331725 3300005338 Unclassified 1299
17 Ga0070660_100264976 3300005339 Bacteria 1403
18 Ga0070689_100096592 3300005340 Unclassified 2336
19 Ga0070661_100131153 3300005344 Unclassified 1882
20 Ga0070675_100038277 3300005354 Bacteria 3908
21 Ga0070671_100253123 3300005355 Unclassified 1496
22 Ga0070688_100172545 3300005365 Unclassified 1494
23 Ga0070659_100411375 3300005366 Unclassified 1143
24 Ga0070667_100171652 3300005367 Unclassified 1915
25 Ga0070663_100277892 3300005455 Unclassified 1334
26 Ga0070662_100299864 3300005457 Unclassified 1305
27 Ga0070681_10359442 3300005458 Bacteria 1366
28 Ga0068867_100172803 3300005459 Unclassified 1712
29 Ga0070679_100472675 3300005530 Unclassified 1198
30 Ga0068853_100050887 3300005539 Bacteria 3564
31 Ga0070672_100338688 3300005543 Unclassified 1280
32 Ga0070686_100186439 3300005544 Unclassified 1478
33 Ga0070664_100376898 3300005564 Unclassified 1294
34 Ga0068854_100387999 3300005578 Unclassified 1152
35 Ga0068852_100135147 3300005616 Bacteria 2276
36 Ga0068852_100284664 3300005616 Unclassified 1595
37 Ga0068859_100440828 3300005617 Unclassified 1399
38 Ga0068866_10100503 3300005718 Unclassified 1595
39 Ga0068851_10152621 3300005834 Unclassified 1264
40 Ga0068858_100412823 3300005842 Unclassified 1298
41 Ga0081455_10156284 3300005937 Bacteria 1753
42 Ga0081538_10038592 3300005981 Bacteria 3078
43 Ga0097621_100209179 3300006237 Unclassified 1697
44 Ga0097621_100474365 3300006237 Unclassified 1130
45 Ga0068871_100045548 3300006358 Bacteria 3531
46 Ga0075428_100049676 3300006844 Bacteria 4602
47 Ga0075431_100244933 3300006847 Bacteria 1822
48 Ga0075433_10325025 3300006852 Bacteria 1361
49 Ga0075434_100162678 3300006871 Bacteria 2251
50 Ga0075429_100035643 3300006880 Bacteria 4327
51 Ga0068865_100190056 3300006881 Unclassified 1587
52 Ga0097620_100440832 3300006931 Unclassified 1399
53 Ga0099794_10069519 3300007265 Bacteria 1723
54 Ga0105240_10622662 3300009093 Unclassified 1186
55 Ga0111539_10219338 3300009094 Bacteria 2215
56 Ga0105245_10490869 3300009098 Bacteria 1243
57 Ga0105247_10079222 3300009101 Unclassified 2067
58 Ga0114129_10470865 3300009147 Bacteria 1645
59 Ga0105243_10009118 3300009148 Bacteria 7577
60 Ga0105243_10446983 3300009148 Unclassified 1212
61 Ga0105242_10150041 3300009176 Unclassified 2032
62 Ga0105248_10492989 3300009177 Unclassified 1381
63 Ga0105237_10210836 3300009545 Unclassified 1943
64 Ga0105238_10357057 3300009551 Bacteria 1450
65 Ga0105239_10509166 3300010375 Bacteria 1369
66 Ga0105239_10625659 3300010375 Bacteria 1228
67 Ga0105246_10104124 3300011119 Unclassified 2072
68 Ga0157370_10343051 3300013104 Unclassified 1377
69 Ga0157374_10230440 3300013296 Bacteria 1819
70 Ga0157374_10418225 3300013296 Unclassified 1339
71 Ga0163162_10435120 3300013306 Bacteria 1444
72 Ga0157372_10389304 3300013307 Bacteria 1624
73 Ga0157375_10564002 3300013308 Unclassified 1300
74 Ga0163163_10512470 3300014325 Unclassified 1262
75 Ga0157379_10250254 3300014968 Unclassified 1609
76 Ga0157376_10333524 3300014969 Unclassified 1446
77 Ga0213872_10126505 3300021361 Unclassified 1127
78 Ga0209672_100077 3300025228 Bacteria 158067
79 Ga0207427_100031 3300025231 Bacteria 350866
80 Ga0209437_100061 3300025233 Bacteria 350866
81 Ga0209258_100097 3300025242 Bacteria 216963
82 Ga0209148_1000063 3300025254 Bacteria 346881
83 Ga0209233_1000076 3300025261 Bacteria 350866
84 Ga0209455_1000096 3300025272 Bacteria 217006
85 Ga0207642_10066457 3300025899 Unclassified 1698
86 Ga0207680_10231478 3300025903 Unclassified 1270
87 Ga0207705_10058107 3300025909 Bacteria 2790
88 Ga0207707_10406230 3300025912 Unclassified 1169
89 Ga0207671_10373231 3300025914 Unclassified 1133
90 Ga0207657_10077018 3300025919 Bacteria 2812
91 Ga0207649_10328808 3300025920 Unclassified 1125
92 Ga0207650_10383336 3300025925 Unclassified 1161
93 Ga0207659_10243773 3300025926 Unclassified 1455
94 Ga0207690_10368284 3300025932 Unclassified 1139
95 Ga0207706_10408798 3300025933 Unclassified 1176
96 Ga0207686_10236554 3300025934 Unclassified 1327
97 Ga0207709_10054160 3300025935 Bacteria 2472
98 Ga0207670_10086114 3300025936 Unclassified 2210
99 Ga0207704_10159603 3300025938 Unclassified 1603
100 Ga0207679_10138224 3300025945 Bacteria 1965
101 Ga0207651_10130240 3300025960 Unclassified 1924
102 Ga0207658_10258686 3300025986 Unclassified 1482
103 Ga0207677_10131143 3300026023 Unclassified 1903
104 Ga0207703_10280074 3300026035 Unclassified 1514
105 Ga0207639_10322343 3300026041 Unclassified 1372
106 Ga0207678_10072668 3300026067 Bacteria 2947
107 Ga0207641_10087723 3300026088 Unclassified 2715
108 Ga0207648_10134365 3300026089 Unclassified 2178
109 Ga0207676_10066877 3300026095 Unclassified 2868
110 Ga0207698_10538572 3300026142 Unclassified 1142
111 Ga0209588_1068926 3300027671 Bacteria 1143
112 Ga0209974_10066229 3300027876 Bacteria 1227
113 Ga0207428_10298392 3300027907 Bacteria 1193
114 Ga0316176_1121843 3300030732 Bacteria 1287
115 Ga0314311_1017902 3300030733 Bacteria 1227
116 Ga0265773_1001524 3300031018 Unclassified 1263
117 Ga0265331_10112273 3300031250 Bacteria 1249
118 Ga0265327_10110970 3300031251 Bacteria 1310
119 Ga0265316_10235848 3300031344 Bacteria 1346
120 Ga0265316_10304498 3300031344 Unclassified 1160
121 Ga0316575_10007309 3300031665 Bacteria 3995
122 Ga0316575_10058945 3300031665 Bacteria 1531
123 Ga0316579_10014433 3300031691 Plasmid 3414
124 Ga0316579_10027186 3300031691 Bacteria 2595
125 Ga0316579_10128156 3300031691 Bacteria 1221
126 Ga0316579_10142308 3300031691 Bacteria 1156
127 Ga0265342_10112370 3300031712 Bacteria 1540
128 Ga0316576_10015171 3300031727 Bacteria 5163
129 Ga0316576_10026859 3300031727 Bacteria 4043
130 Ga0316576_10184561 3300031727 Bacteria 1573
131 Ga0316576_10242872 3300031727 Bacteria 1353
132 Ga0316576_10288610 3300031727 Bacteria 1227
133 Ga0316578_10007085 3300031728 Bacteria 5589
134 Ga0316578_10062902 3300031728 Bacteria 2188
135 Ga0316578_10171615 3300031728 Bacteria 1307
136 Ga0316578_10188489 3300031728 Bacteria 1242
137 Ga0316578_10230814 3300031728 Bacteria 1111
138 Ga0316577_10135077 3300031733 Unclassified 1388
139 Ga0316577_10173099 3300031733 Bacteria 1218
140 Ga0316583_10010783 3300032133 Bacteria 3293
141 Ga0316583_10049634 3300032133 Bacteria 1477
142 Ga0316583_10072405 3300032133 Unclassified 1205
143 Ga0316585_10050882 3300032137 Bacteria 1330
144 Ga0316585_10051024 3300032137 Unclassified 1328
145 Ga0316580_10024595 3300032139 Bacteria 1861
146 Ga0316580_10065886 3300032139 Bacteria 1110
147 Ga0316593_10037127 3300032168 Bacteria 1609
148 Ga0316593_10039726 3300032168 Unclassified 1562
149 Ga0316593_10055686 3300032168 Bacteria 1344
150 Ga0316592_1003935 3300033524 Bacteria 2725
151 Ga0316592_1019027 3300033524 Bacteria 1450
152 Ga0316592_1021307 3300033524 Bacteria 1380
153 Ga0316586_1015635 3300033527 Bacteria 1209
154 Ga0316588_1005782 3300033528 Bacteria 2434
155 Ga0316588_1013263 3300033528 Bacteria 1785
156 Ga0316588_1017471 3300033528 Unclassified 1599
157 Ga0316596_1005151 3300033541 Bacteria 2973
158 Ga0316596_1017813 3300033541 Unclassified 1790
159 Ga0316596_1033415 3300033541 Unclassified 1340
160 Ga0373934_0099059 3300035086 Unclassified 1178
161 Ga0373954_0192499 3300035118 Unclassified 1001
162 Ga0373956_0001095 3300035119 Bacteria 11138
163 Ga0316574_0001443 3300035398 Bacteria 11282
164 Ga0316574_0132152 3300035398 Bacteria 1606
165 Ga0316574_0171876 3300035398 Bacteria 1395
166 Ga0316574_0177731 3300035398 Unclassified 1370
167 Ga0316574_0187201 3300035398 Unclassified 1331
168 Ga0316574_0248563 3300035398 Unclassified 1136
169 Ga0373933_0177462 3300035724 Unclassified 1357
170 Ga0373937_0318045 3300036401 Unclassified 1472
171 Ga0316582_0143928 3300036647 Bacteria 1608
172 Ga0316582_0168600 3300036647 Unclassified 1485
173 Ga0316582_0195016 3300036647 Bacteria 1380
174 Ga0316582_0198686 3300036647 Bacteria 1367
175 Ga0316584_0052119 3300036712 Bacteria 3060
176 Ga0316584_0212455 3300036712 Unclassified 1423
177 Ga0316584_0255361 3300036712 Bacteria 1279
178 Ga0316584_0310221 3300036712 Bacteria 1140
179 Ga0395900_0029259 3300037418 Bacteria 5650
180 Ga0395898_0269333 3300037466 Unclassified 1624
181 Ga0316581_0041254 3300037588 Unclassified 1406
182 Ga0316581_0048550 3300037588 Bacteria 1299
183 Ga0436364_1508368 3300037853 Bacteria 1676
184 Ga0395901_0000089 3300038443 Bacteria 124305
185 Ga0395901_0027825 3300038443 Bacteria 5813
186 Ga0400484_16802 3300038725 Bacteria 3014
187 Ga0400490_30510 3300038726 Bacteria 2178
188 Ga0400491_21987 3300038727 Bacteria 1945
189 Ga0400483_050298 3300039062 Unclassified 1359
190 Ga0400483_093827 3300039062 Bacteria 1948
191 Ga0400483_207936 3300039062 Bacteria 1440
192 Ga0400489_91487 3300039093 Bacteria 2971
193 Ga0400487_14033 3300039110 Bacteria 1637
194 Ga0400487_46217 3300039110 Bacteria 3076
195 Ga0436361_0491845 3300039447 Bacteria 1390
196 Ga0436361_0908139 3300039447 Bacteria 1549
197 Ga0436361_1016999 3300039447 Unclassified 1333
198 Ga0439453_0020891 3300041408 Bacteria 1176
199 Ga0439465_0030316 3300041413 Bacteria 1720
200 Ga0439433_0018210 3300041999 Bacteria 1562
201 Ga0439448_0044971 3300042005 Unclassified 1436
202 Ga0439449_0010506 3300042007 Bacteria 3498
203 Ga0439449_0068572 3300042007 Bacteria 1307
204 Ga0439450_005579 3300042008 Unclassified 2220
205 Ga0439455_0004097 3300042012 Bacteria 2858
206 Ga0439462_0035489 3300042015 Bacteria 1326
207 Ga0450911_008763 3300042115 Bacteria 1433
208 Ga0450911_012701 3300042115 Bacteria 1136
209 Ga0450906_018832 3300042145 Bacteria 1237
210 Ga0450910_013043 3300042147 Bacteria 1206
211 Ga0450893_0012300 3300042532 Bacteria 1421
212 Ga0466969_0105683 3300044656 Bacteria 1321
213 Ga0466976_0142345 3300044662 Bacteria 1451
214 Ga0453683_0093424 3300044673 Unclassified 1886
215 Ga0466965_0185894 3300044683 Bacteria 1097
216 Ga0453684_0253996 3300044712 Bacteria 2017
217 Ga0453684_0636072 3300044712 Bacteria 1165
218 Ga0466970_0086146 3300044765 Bacteria 1702
219 Ga0466970_0087274 3300044765 Bacteria 1692
220 Ga0466957_0076321 3300044842 Bacteria 2080
221 Ga0466959_0123053 3300045049 Bacteria 1842
222 Ga0466959_0173836 3300045049 Bacteria 1509
223 Ga0466958_0137482 3300045836 Bacteria 1537
224 Ga0466958_0241170 3300045836 Bacteria 1155
225 Ga0495592_0247053 3300046454 Unclassified 1181
226 Ga0495631_0000913 3300046518 Bacteria 18362
227 Ga0495587_0154880 3300046536 Unclassified 1305
228 Ga0495657_0240560 3300046675 Unclassified 1092
229 Ga0495623_0065373 3300046679 Unclassified 2274
230 Ga0495646_0168209 3300046680 Unclassified 1209
231 Ga0495604_0135170 3300047317 Bacteria 1768
232 Ga0495683_0011354 3300047323 Bacteria 4690
233 Ga0495681_0007274 3300047470 Bacteria 7112
234 Ga0495602_0128871 3300048088 Unclassified 2021
235 Ga0496104_0440910 3300048907 Unclassified 1214
236 Ga0496108_0282373 3300048911 Bacteria 1445
237 Ga0496109_0374935 3300048912 Bacteria 1344
238 Ga0501033_0206106 3300049570 Bacteria 1403
239 Ga0501039_0295707 3300049575 Bacteria 1273
240 Ga0501039_0316939 3300049575 Bacteria 1226
241 Ga0501042_0230760 3300049578 Unclassified 1335
242 Ga0501047_0018664 3300049581 Bacteria 6651
243 Ga0501072_0305684 3300049588 Bacteria 1264
244 Ga0501075_0266496 3300049591 Bacteria 1305
245 Ga0501076_0251190 3300049592 Bacteria 1447
246 Ga0501076_0340129 3300049592 Bacteria 1231
247 Ga0501077_0176997 3300049593 Unclassified 1355
248 Ga0501079_0311213 3300049741 Bacteria 1232
249 Ga0501035_0383130 3300049822 Bacteria 1172
250 nmdc:mga05p37_331764_c1 3300050507 Bacteria 1797
251 nmdc:mga09592_246283_c1 3300050508 Bacteria 1549
252 nmdc:mga06r32_251538_c1 3300050510 Bacteria 1755
253 nmdc:mga08y16_508727_c1 3300050511 Bacteria 1223
254 nmdc:mga0a205_501992_c1 3300050515 Bacteria 1070
255 Ga0495612_0098769 3300053078 Unclassified 1242
256 Ga0530510_0174392 3300061734 Bacteria 1593
257 Ga0530510_0234843 3300061734 Unclassified 1364
258 2817455787 2816332286 Bacteria 6853759
259 2894511392 2894510363 Bacteria 5121143
260 Ga0495643_0023751
261 JGI25162J39368_1000816
262 JGI25164J39214_1000004
263 JGI25406J46586_10028340
264 JGI25165J46597_1000110
265 rootH1_10175379
266 rootH2_10248051
267 Ga0055535_1001414
268 Ga0055542_1001579
269 Ga0055529_1000092
270 Ga0070658_10035573
271 Ga0070690_100237979
272 Ga0070670_100219768
273 Ga0070666_10144756
274 Ga0070682_100242501
275 Ga0068868_100331725
276 Ga0070660_100264976
277 Ga0070689_100096592
278 Ga0070661_100131153
279 Ga0070675_100038277
280 Ga0070671_100253123
281 Ga0070688_100172545
282 Ga0070659_100411375
283 Ga0070667_100171652
284 Ga0070663_100277892
285 Ga0070662_100299864
286 Ga0070681_10359442
287 Ga0068867_100172803
288 Ga0070679_100472675
289 Ga0068853_100050887
290 Ga0070672_100338688
291 Ga0070686_100186439
292 Ga0070664_100376898
293 Ga0068854_100387999
294 Ga0068852_100135147
295 Ga0068852_100284664
296 Ga0068859_100440828
297 Ga0068866_10100503
298 Ga0068851_10152621
299 Ga0068858_100412823
300 Ga0081455_10156284
301 Ga0081538_10038592
302 Ga0097621_100209179
303 Ga0097621_100474365
304 Ga0068871_100045548
305 Ga0075428_100049676
306 Ga0075431_100244933
307 Ga0075433_10325025
308 Ga0075434_100162678
309 Ga0075429_100035643
310 Ga0068865_100190056
311 Ga0097620_100440832
312 Ga0099794_10069519
313 Ga0105240_10622662
314 Ga0111539_10219338
315 Ga0105245_10490869
316 Ga0105247_10079222
317 Ga0114129_10470865
318 Ga0105243_10009118
319 Ga0105243_10446983
320 Ga0105242_10150041
321 Ga0105248_10492989
322 Ga0105237_10210836
323 Ga0105238_10357057
324 Ga0105239_10509166
325 Ga0105239_10625659
326 Ga0105246_10104124
327 Ga0157370_10343051
328 Ga0157374_10230440
329 Ga0157374_10418225
330 Ga0163162_10435120
331 Ga0157372_10389304
332 Ga0157375_10564002
333 Ga0163163_10512470
334 Ga0157379_10250254
335 Ga0157376_10333524
336 Ga0213872_10126505
337 Ga0209672_100077
338 Ga0207427_100031
339 Ga0209437_100061
340 Ga0209258_100097
341 Ga0209148_1000063
342 Ga0209233_1000076
343 Ga0209455_1000096
344 Ga0207642_10066457
345 Ga0207680_10231478
346 Ga0207705_10058107
347 Ga0207707_10406230
348 Ga0207671_10373231
349 Ga0207657_10077018
350 Ga0207649_10328808
351 Ga0207650_10383336
352 Ga0207659_10243773
353 Ga0207690_10368284
354 Ga0207706_10408798
355 Ga0207686_10236554
356 Ga0207709_10054160
357 Ga0207670_10086114
358 Ga0207704_10159603
359 Ga0207679_10138224
360 Ga0207651_10130240
361 Ga0207658_10258686
362 Ga0207677_10131143
363 Ga0207703_10280074
364 Ga0207639_10322343
365 Ga0207678_10072668
366 Ga0207641_10087723
367 Ga0207648_10134365
368 Ga0207676_10066877
369 Ga0207698_10538572
370 Ga0209588_1068926
371 Ga0209974_10066229
372 Ga0207428_10298392
373 Ga0316176_1121843
374 Ga0314311_1017902
375 Ga0265773_1001524
376 Ga0265331_10112273
377 Ga0265327_10110970
378 Ga0265316_10235848
379 Ga0265316_10304498
380 Ga0316575_10007309
381 Ga0316575_10058945
382 Ga0316579_10014433
383 Ga0316579_10027186
384 Ga0316579_10128156
385 Ga0316579_10142308
386 Ga0265342_10112370
387 Ga0316576_10015171
388 Ga0316576_10026859
389 Ga0316576_10184561
390 Ga0316576_10242872
391 Ga0316576_10288610
392 Ga0316578_10007085
393 Ga0316578_10062902
394 Ga0316578_10171615
395 Ga0316578_10188489
396 Ga0316578_10230814
397 Ga0316577_10135077
398 Ga0316577_10173099
399 Ga0316583_10010783
400 Ga0316583_10049634
401 Ga0316583_10072405
402 Ga0316585_10050882
403 Ga0316585_10051024
404 Ga0316580_10024595
405 Ga0316580_10065886
406 Ga0316593_10037127
407 Ga0316593_10039726
408 Ga0316593_10055686
409 Ga0316592_1003935
410 Ga0316592_1019027
411 Ga0316592_1021307
412 Ga0316586_1015635
413 Ga0316588_1005782
414 Ga0316588_1013263
415 Ga0316588_1017471
416 Ga0316596_1005151
417 Ga0316596_1017813
418 Ga0316596_1033415
419 Ga0373934_0099059
420 Ga0373954_0192499
421 Ga0373956_0001095
422 Ga0316574_0001443
423 Ga0316574_0132152
424 Ga0316574_0171876
425 Ga0316574_0177731
426 Ga0316574_0187201
427 Ga0316574_0248563
428 Ga0373933_0177462
429 Ga0373937_0318045
430 Ga0316582_0143928
431 Ga0316582_0168600
432 Ga0316582_0195016
433 Ga0316582_0198686
434 Ga0316584_0052119
435 Ga0316584_0212455
436 Ga0316584_0255361
437 Ga0316584_0310221
438 Ga0395900_0029259
439 Ga0395898_0269333
440 Ga0316581_0041254
441 Ga0316581_0048550
442 Ga0436364_1508368
443 Ga0395901_0000089
444 Ga0395901_0027825
445 Ga0400484_16802
446 Ga0400490_30510
447 Ga0400491_21987
448 Ga0400483_050298
449 Ga0400483_093827
450 Ga0400483_207936
451 Ga0400489_91487
452 Ga0400487_14033
453 Ga0400487_46217
454 Ga0436361_0491845
455 Ga0436361_0908139
456 Ga0436361_1016999
457 Ga0439453_0020891
458 Ga0439465_0030316
459 Ga0439433_0018210
460 Ga0439448_0044971
461 Ga0439449_0010506
462 Ga0439449_0068572
463 Ga0439450_005579
464 Ga0439455_0004097
465 Ga0439462_0035489
466 Ga0450911_008763
467 Ga0450911_012701
468 Ga0450906_018832
469 Ga0450910_013043
470 Ga0450893_0012300
471 Ga0466969_0105683
472 Ga0466976_0142345
473 Ga0453683_0093424
474 Ga0466965_0185894
475 Ga0453684_0253996
476 Ga0453684_0636072
477 Ga0466970_0086146
478 Ga0466970_0087274
479 Ga0466957_0076321
480 Ga0466959_0123053
481 Ga0466959_0173836
482 Ga0466958_0137482
483 Ga0466958_0241170
484 Ga0495592_0247053
485 Ga0495631_0000913
486 Ga0495587_0154880
487 Ga0495657_0240560
488 Ga0495623_0065373
489 Ga0495646_0168209
490 Ga0495604_0135170
491 Ga0495683_0011354
492 Ga0495681_0007274
493 Ga0495602_0128871
494 Ga0496104_0440910
495 Ga0496108_0282373
496 Ga0496109_0374935
497 Ga0501033_0206106
498 Ga0501039_0295707
499 Ga0501039_0316939
500 Ga0501042_0230760
501 Ga0501047_0018664
502 Ga0501072_0305684
503 Ga0501075_0266496
504 Ga0501076_0251190
505 Ga0501076_0340129
506 Ga0501077_0176997
507 Ga0501079_0311213
508 Ga0501035_0383130
509 nmdc:mga05p37_331764_c1
510 nmdc:mga09592_246283_c1
511 nmdc:mga06r32_251538_c1
512 nmdc:mga08y16_508727_c1
513 nmdc:mga0a205_501992_c1
514 Ga0495612_0098769
515 Ga0530510_0174392
516 Ga0530510_0234843
517 2817455787
518 2894511392

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13358

DDE_3

DDE superfamily endonuclease

215

357

0.98

PF13592

HTH_33

Winged helix-turn helix

142

201

0.97

PF13518

HTH_28

Helix-turn-helix domain

64

115

0.96

PF13384

HTH_23

Homeodomain-like domain

60

108

0.94

PF13551

HTH_29

Winged helix-turn helix

65

124

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
4mq3-assembly1.cif.gz_A the 1.1 angstrom structure of catalytic core domain of fiv integrase 0.7815 171 323
3oyi-assembly1.cif.gz_B crystal structure of the pfv s217q mutant intasome in complex with manganese 0.7617 171 325
6qbt-assembly1.cif.gz_A structure of the htlv-2 integrase catalytic core domain in complex with magnesium (trimeric form) 0.7569 171 326
4mq3-assembly1.cif.gz_A the 1.1 angstrom structure of catalytic core domain of fiv integrase 0.755 171 323
3os1-assembly1.cif.gz_B pfv target capture complex (tcc) at 2.97 a resolution 0.7537 171 322
ID Description Score Start End Superfamily
2r0qF02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9327 19 54 1.10.10.60
af_Q9VBW6_7_72_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9044 18 57 1.10.10.10
af_Q2G2N6_1_70_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8836 20 57 1.10.10.10
af_P24610_34_102_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8785 18 69 1.10.10.10
1u78A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8558 19 57 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A6H1RB55-F1-model_v4 Transposase 0.9717 210 343 GO:0003676
AF-A0A4R4XY27-F1-model_v4 Transposase 0.9651 206 341 GO:0003676
AF-A0A6M5YYN3-F1-model_v4 Mobile element protein 0.96 212 344 GO:0003676
AF-A0A4Q0AY76-F1-model_v4 Tc1-like transposase DDE domain-containing protein 0.9599 217 343 GO:0003676
AF-R9J500-F1-model_v4 Tc1-like transposase DDE domain-containing protein 0.9599 212 341 GO:0003676

Map