F365948

General Info

Members Datasets Scaffolds Average Seq Length
255 198 210 479

Family's Representative Sequence

Representative Sequence 3300046519|Ga0495632_0009036|Ga0495632_0009036_598_2352
Length 575
Sequence MWITSSTSSPRWASQSNRASGATKSAIGDLAMFFHLFCAASPSQSQTTTSRLSSSHSLAAMLEPMKRLDMVRVMAQGATGASIGRGVGVNMRIDRDGPILVWLRNDLRLADNPALAAAAATGRPVIPLYILDQTPGVRPMGGASLWWLDKSLAALAAALEAIGSRLILRRGPAREVLEDLVAHAQPAAVVWNRLYDAASIDRDGGLKTWLRNEGIACESFNAGLLNEPWTVKNGAGQPYKVFTPYWRAAREQLRQVHVEPAPRVLAAPPSWPGAEALESWALHPARPDWSRGFDLWTPGEAGAADRLDDFLSGCVEDYDRRRDLPGVEATSRLSPHLHFGEIGPRQVWLAARNAVEAGDAPAGQVEKFLSEIGWREFNHSILFHNPDLPKANFRPEFDGFPWIRDEAAFEAWTRGETGYPIVDAGLRELWSTGFMHNRVRMIAASFLIKHLLVDWRQGEAWFWDTLVDADLANNVGNWQWVAGSGADAAPYFRIFNPIAQGQKFDPAGTYVRRWVPELANLPAALIHEPWKASAQLTAAARRIYGEPIVGHSAARERALAGYRGLKGEEISRENR

Samples

Sample ID Description Type Environment
1 2519103095 Burkholderia sp. KJ006 Isolate Nodule
2 2582581279 Caulobacter henricii OK261 Isolate Rhizosphere
3 2582581280 Caulobacter henricii CF287 Isolate Rhizosphere
4 2582581293 Caulobacter henricii YR570 Isolate Rhizosphere
5 2582581311 Burkholderia sp. WP42 Isolate Rhizosphere
6 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
7 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
8 2643221545 Caulobacter sp. Root1455 Isolate Unclassified
9 2643221552 Caulobacter sp. Root1472 Isolate Unclassified
10 2643221584 Caulobacter sp. Root656 Isolate Unclassified
11 2643221640 Caulobacter sp. Root342 Isolate Unclassified
12 2643221642 Caulobacter sp. Root343 Isolate Unclassified
13 2643221649 Leifsonia sp. Root4 Isolate Unclassified
14 2643221691 Caulobacter sp. Root487D2Y Isolate Unclassified
15 2791355048 Caulobacter flavus CGMCC1 15093 Isolate Rhizosphere
16 2816332253 Burkholderia vietnamiensis HI2297 Isolate Unclassified
17 2816332256 Burkholderia vietnamiensis MSMB608WGS Isolate Unclassified
18 2816332286 Burkholderia vietnamiensis HI2221 Isolate Rhizosphere
19 2818991435 Caulobacter henricii 536 Isolate Unclassified
20 2818991454 Caulobacter rhizosphaerae 3260 Isolate Rhizosphere
21 2841911363 Bosea caraganae RCAM04685 Isolate Nodule
22 2841917233 Bosea caraganae RCAM04680 Isolate Nodule
23 2843744320 Caulobacter flavus RHGG3 Isolate Unclassified
24 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
25 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
26 2849560528 Caulobacter zeae 410 Isolate Unclassified
27 2849573788 Caulobacter endophyticus 774 Isolate Unclassified
28 2851153111 Caulobacter radicis 736 Isolate Unclassified
29 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
30 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
31 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
32 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
33 2898329390 Caulobacter sp. 602-2 Isolate Rhizosphere
34 2917554339 Chthonobacter rhizosphaerae yh7-1 Isolate Rhizosphere
35 2919450847 Ancylobacter sp. 3268 Isolate Rhizosphere
36 2928531327 Caulobacter sp. 1776 Isolate Rhizosphere
37 2928972540 Brevundimonas sp. 1080 Isolate Rhizosphere
38 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
39 2939669807 Kaistia defluvii 3207 Isolate Rhizosphere
40 2977240413 Brevundimonas vesicularis SORGH_AS 431 Isolate Unclassified
41 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
42 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
43 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
44 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
45 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
46 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
47 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
48 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
49 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
50 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
51 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
52 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
53 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
54 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
55 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
56 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
57 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
58 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
59 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
60 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
61 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
62 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
63 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
64 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
65 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
66 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
67 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
68 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
69 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
70 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
71 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
72 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
73 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
74 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
75 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
79 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
80 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
81 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
82 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
83 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
84 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
85 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
86 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
87 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
101 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
102 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
103 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
104 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
105 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
106 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
107 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
108 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
109 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
110 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
111 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
112 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
113 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
114 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
115 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
116 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
117 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
118 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
119 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
120 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
121 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
122 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
123 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
124 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
125 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
126 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
127 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
128 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
129 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
130 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
131 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
132 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
133 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
134 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
135 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
136 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
137 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
138 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
139 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
140 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
141 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
142 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
143 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
144 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
145 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
146 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
147 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
148 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
149 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
150 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
151 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
152 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
153 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
154 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
155 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
156 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
157 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
158 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
159 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
160 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
161 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
162 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
163 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
164 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
165 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
166 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
167 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
168 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
169 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
170 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
171 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
172 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
173 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
174 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
175 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
176 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
177 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
178 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
179 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
180 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
181 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
182 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
183 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
184 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
185 3300053141 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 endosphere Metagenome Endosphere
186 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
187 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
188 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
189 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
190 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
191 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
192 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
193 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
194 8001845381 Ancylobacter sonchi VKM B-3145 Isolate Unclassified
195 8020807995 Burkholderia sp. B10 Isolate Rhizosphere
196 8039098773 Burkholderia multivorans MSMB612WGS Isolate Unclassified
197 8040167225 Burkholderia vietnamiensis RS1 Isolate Unclassified
198 8040173305 Burkholderia vietnamiensis BE10 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.35
Metatranscriptomes 0
Isolates 17.65

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 24.71
Nodule 1.18
Rhizoplane 2.75
Rhizosphere 57.65
Stem 0
Stem Tuber 0
Unclassified 13.73

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10017273 3300003316 Bacteria 17955
2 Ga0055532_1000334 3300003758 Bacteria 25777
3 Ga0055527_1000324 3300003760 Bacteria 25777
4 Ga0055535_1000703 3300003761 Bacteria 25777
5 Ga0055537_1003899 3300003773 Bacteria 4439
6 Ga0055524_1001209 3300003775 Bacteria 15317
7 Ga0055536_1000610 3300003781 Bacteria 24362
8 Ga0055528_1014961 3300003790 Bacteria 2830
9 Ga0055530_10000405 3300003791 Bacteria 38619
10 Ga0055530_10001260 3300003791 Bacteria 19195
11 Ga0055530_10003412 3300003791 Bacteria 9061
12 Ga0055531_10000224 3300003794 Bacteria 62709
13 Ga0070658_10001940 3300005327 Bacteria 17392
14 Ga0070658_10041889 3300005327 Bacteria 3694
15 Ga0070680_100000869 3300005336 Bacteria 21457
16 Ga0070660_100025537 3300005339 Bacteria 4391
17 Ga0070689_100092407 3300005340 Bacteria 2387
18 Ga0070691_10012985 3300005341 Bacteria 3814
19 Ga0070713_100072727 3300005436 Bacteria 2909
20 Ga0070681_10002623 3300005458 Bacteria 16509
21 Ga0070679_100001367 3300005530 Bacteria 21514
22 Ga0070679_100082218 3300005530 Bacteria 3211
23 Ga0070697_100172740 3300005536 Bacteria 1830
24 Ga0070665_100003941 3300005548 Bacteria 15664
25 Ga0070665_100013613 3300005548 Bacteria 8181
26 Ga0070665_100033819 3300005548 Bacteria 5142
27 Ga0068855_100019955 3300005563 Bacteria 8050
28 Ga0068855_100071620 3300005563 Bacteria 4030
29 Ga0068855_100312014 3300005563 Bacteria 1740
30 Ga0068857_100242076 3300005577 Bacteria 1652
31 Ga0068856_100004294 3300005614 Bacteria 14224
32 Ga0068852_100099354 3300005616 Bacteria 2623
33 Ga0081455_10011189 3300005937 Bacteria 9027
34 Ga0075365_10026544 3300006038 Bacteria 3678
35 Ga0075364_10017312 3300006051 Bacteria 4500
36 Ga0075366_10000716 3300006195 Bacteria 15743
37 Ga0097621_100000101 3300006237 Bacteria 48184
38 Ga0068871_100000360 3300006358 Bacteria 31821
39 Ga0105240_10002789 3300009093 Bacteria 27624
40 Ga0105242_10046039 3300009176 Bacteria 3538
41 Ga0157370_10013559 3300013104 Bacteria 8389
42 Ga0157370_10073060 3300013104 Bacteria 3236
43 Ga0157369_10000192 3300013105 Bacteria 84935
44 Ga0209672_100026 3300025228 Bacteria 348998
45 Ga0209147_100033 3300025229 Bacteria 348998
46 Ga0209258_100051 3300025242 Bacteria 348998
47 Ga0209759_1004874 3300025256 Bacteria 4866
48 Ga0209565_1000414 3300025263 Bacteria 35246
49 Ga0209455_1000154 3300025272 Bacteria 124382
50 Ga0209673_1001894 3300025273 Bacteria 16797
51 Ga0209676_1000031 3300025292 Bacteria 478976
52 Ga0209676_1000057 3300025292 Bacteria 361061
53 Ga0209758_1012356 3300025297 Bacteria 4789
54 Ga0209050_1000087 3300025298 Bacteria 261460
55 Ga0209050_1000096 3300025298 Bacteria 240109
56 Ga0209256_1000353 3300025299 Bacteria 74809
57 Ga0209256_1005864 3300025299 Bacteria 6810
58 Ga0209257_1000050 3300025304 Bacteria 439325
59 Ga0209257_1000326 3300025304 Bacteria 99865
60 Ga0209257_1003224 3300025304 Bacteria 14376
61 Ga0207707_10001478 3300025912 Bacteria 21751
62 Ga0207695_10019166 3300025913 Bacteria 7883
63 Ga0207695_10044905 3300025913 Bacteria 4696
64 Ga0207693_10099101 3300025915 Bacteria 2285
65 Ga0207660_10068092 3300025917 Bacteria 2581
66 Ga0207657_10020355 3300025919 Bacteria 6271
67 Ga0207649_10075786 3300025920 Bacteria 2162
68 Ga0207652_10002823 3300025921 Bacteria 14582
69 Ga0207700_10030052 3300025928 Bacteria 3843
70 Ga0207686_10011354 3300025934 Bacteria 4877
71 Ga0207667_10013881 3300025949 Bacteria 9202
72 Ga0207667_10103505 3300025949 Bacteria 2936
73 Ga0207667_10171923 3300025949 Bacteria 2226
74 Ga0207702_10000365 3300026078 Bacteria 51814
75 Ga0207674_10119663 3300026116 Bacteria 2602
76 Ga0268266_10000695 3300028379 Bacteria 45341
77 Ga0268266_10007369 3300028379 Bacteria 9936
78 Ga0265319_1002824 3300028563 Bacteria 9276
79 Ga0265334_10003316 3300028573 Bacteria 7340
80 Ga0265334_10006804 3300028573 Bacteria 4909
81 Ga0265318_10003303 3300028577 Bacteria 8186
82 Ga0265323_10000250 3300028653 Bacteria 31569
83 Ga0265336_10000724 3300028666 Bacteria 17458
84 Ga0307515_10066745 3300028794 Bacteria 4977
85 Ga0307515_10071955 3300028794 Bacteria 4676
86 Ga0265338_10000131 3300028800 Bacteria 137627
87 Ga0265338_10009329 3300028800 Bacteria 11724
88 Ga0265327_10000166 3300031251 Bacteria 141539
89 Ga0265327_10006281 3300031251 Bacteria 9569
90 Ga0265327_10016586 3300031251 Bacteria 4668
91 Ga0265314_10019892 3300031711 Bacteria 5191
92 Ga0373933_0078053 3300035724 Bacteria 2025
93 Ga0395899_0102683 3300037312 Bacteria 2063
94 Ga0395900_0000098 3300037418 Bacteria 158030
95 Ga0395900_0042632 3300037418 Bacteria 4676
96 Ga0395900_0054055 3300037418 Bacteria 4134
97 Ga0395898_0016971 3300037466 Bacteria 7434
98 Ga0395898_0028548 3300037466 Bacteria 5591
99 Ga0395901_0000282 3300038443 Bacteria 63044
100 Ga0400488_07576 3300038741 Bacteria 6605
101 Ga0400487_13235 3300039110 Bacteria 7907
102 Ga0436361_0868648 3300039447 Bacteria 3429
103 Ga0466969_0031402 3300044656 Bacteria 2703
104 Ga0466965_0000310 3300044683 Bacteria 16303
105 Ga0466966_0000103 3300044684 Bacteria 51642
106 Ga0466966_0010464 3300044684 Bacteria 6163
107 Ga0466961_0000101 3300044693 Bacteria 55958
108 Ga0466961_0105528 3300044693 Bacteria 1774
109 Ga0466963_0000409 3300044694 Bacteria 19660
110 Ga0466971_0000699 3300044719 Bacteria 13423
111 Ga0466968_0016246 3300044735 Bacteria 2962
112 Ga0466970_0052694 3300044765 Bacteria 2172
113 Ga0466957_0002516 3300044842 Bacteria 9862
114 Ga0466957_0002836 3300044842 Bacteria 9376
115 Ga0466959_0082090 3300045049 Bacteria 2322
116 Ga0451576_0041248 3300045051 Bacteria 4881
117 Ga0466958_0011271 3300045836 Bacteria 5032
118 Ga0495638_0000055 3300046460 Bacteria 196038
119 Ga0495638_0000425 3300046460 Bacteria 50947
120 Ga0495638_0000672 3300046460 Bacteria 37144
121 Ga0495650_0000007 3300046471 Bacteria 718072
122 Ga0495583_0041426 3300046506 Bacteria 2157
123 Ga0495606_0005968 3300046507 Bacteria 11425
124 Ga0495610_0000029 3300046512 Bacteria 271137
125 Ga0495610_0001407 3300046512 Bacteria 21348
126 Ga0495631_0006624 3300046518 Bacteria 5959
127 Ga0495632_0009036 3300046519 Bacteria 6040
128 Ga0495632_0039546 3300046519 Bacteria 2380
129 Ga0495637_0013505 3300046520 Bacteria 3873
130 Ga0495643_0001617 3300046522 Bacteria 19950
131 Ga0495648_0000120 3300046524 Bacteria 94692
132 Ga0495648_0002731 3300046524 Bacteria 15940
133 Ga0495663_0000069 3300046525 Bacteria 47344
134 Ga0495654_0000116 3300046530 Bacteria 90109
135 Ga0495668_0000019 3300046616 Bacteria 416042
136 Ga0495668_0011259 3300046616 Bacteria 5366
137 Ga0495668_0051717 3300046616 Bacteria 2274
138 Ga0495611_0039447 3300046648 Bacteria 2102
139 Ga0495625_0000025 3300046660 Bacteria 267383
140 Ga0495625_0001501 3300046660 Bacteria 28036
141 Ga0495625_0012012 3300046660 Bacteria 7028
142 Ga0495625_0014633 3300046660 Bacteria 6251
143 Ga0495625_0051319 3300046660 Bacteria 2957
144 Ga0495625_0066146 3300046660 Bacteria 2546
145 Ga0495588_0001442 3300046674 Bacteria 10179
146 Ga0495671_0008068 3300046692 Bacteria 5946
147 Ga0495649_0000619 3300046694 Bacteria 29384
148 Ga0495649_0036697 3300046694 Bacteria 2692
149 Ga0495660_0003311 3300046810 Bacteria 9995
150 Ga0495672_0007059 3300047320 Bacteria 8526
151 Ga0495687_026251 3300047443 Bacteria 2744
152 Ga0495673_0000241 3300047469 Bacteria 77386
153 Ga0495686_0000023 3300047472 Bacteria 400457
154 Ga0495686_0000515 3300047472 Bacteria 55894
155 Ga0495686_0002291 3300047472 Bacteria 18355
156 Ga0495686_0004265 3300047472 Bacteria 11855
157 Ga0495686_0027990 3300047472 Bacteria 3675
158 Ga0496106_0128425 3300048909 Bacteria 1986
159 Ga0496107_0039810 3300048910 Bacteria 3372
160 Ga0496107_0092268 3300048910 Bacteria 2214
161 Ga0496108_0001403 3300048911 Bacteria 18987
162 Ga0496109_0002483 3300048912 Bacteria 15455
163 Ga0496110_0006564 3300048913 Bacteria 9236
164 Ga0496112_0018408 3300048915 Bacteria 6576
165 Ga0496121_0000854 3300048924 Bacteria 55170
166 Ga0496122_0002320 3300048925 Bacteria 27466
167 Ga0496123_0001110 3300048926 Bacteria 40337
168 Ga0496125_0017478 3300048928 Bacteria 6833
169 Ga0496126_0006009 3300048929 Bacteria 13637
170 Ga0496126_0190175 3300048929 Bacteria 1739
171 Ga0495678_000059 3300049459 Bacteria 143694
172 Ga0495678_001389 3300049459 Bacteria 19255
173 Ga0495682_0000119 3300049460 Bacteria 68776
174 Ga0501073_0117405 3300049589 Bacteria 1844
175 Ga0501044_0058102 3300049823 Bacteria 3968
176 nmdc:mga03683_9506_c1 3300050489 Bacteria 3461
177 nmdc:mga00v17_15556_c1 3300050491 Bacteria 4270
178 nmdc:mga0yw44_20366_c1 3300050492 Bacteria 3680
179 nmdc:mga0k408_43947_c1 3300050493 Bacteria 2576
180 nmdc:mga07m45_86678_c1 3300050496 Bacteria 1791
181 nmdc:mga0sz30_25113_c1 3300050516 Bacteria 1707
182 Ga0500578_0000035 3300053086 Bacteria 136406
183 Ga0500578_0001096 3300053086 Bacteria 29244
184 Ga0500644_0000134 3300053088 Bacteria 45635
185 Ga0500651_0019348 3300053093 Bacteria 4230
186 Ga0500572_000338 3300053111 Bacteria 16833
187 Ga0500594_0000115 3300053118 Bacteria 22812
188 Ga0500595_004486 3300053119 Bacteria 6254
189 Ga0500608_000004 3300053122 Bacteria 108109
190 Ga0500614_005850 3300053123 Bacteria 2581
191 Ga0500618_000110 3300053125 Bacteria 66025
192 Ga0500559_0000055 3300053136 Bacteria 89392
193 Ga0500559_0006221 3300053136 Bacteria 5403
194 Ga0500564_000277 3300053138 Bacteria 14194
195 Ga0500564_030555 3300053138 Bacteria 2481
196 Ga0500573_0062221 3300053140 Bacteria 2137
197 Ga0500573_0068487 3300053140 Bacteria 2026
198 Ga0500574_000008 3300053141 Bacteria 50554
199 Ga0500577_0019731 3300053142 Bacteria 2191
200 Ga0500590_047034 3300053148 Bacteria 2204
201 Ga0500616_0000933 3300053153 Bacteria 31971
202 Ga0500622_0003549 3300053156 Bacteria 10329
203 Ga0500622_0004510 3300053156 Bacteria 8711
204 Ga0500622_0009501 3300053156 Bacteria 5379
205 Ga0500622_0027969 3300053156 Bacteria 2971
206 Ga0500624_000593 3300053157 Bacteria 9924
207 Ga0500636_0039246 3300053177 Bacteria 2800
208 Ga0500645_012351 3300053730 Bacteria 2762
209 Ga0466962_0000190 3300061719 Bacteria 25645
210 Ga0466962_0014469 3300061719 Bacteria 3803

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2939657138 2939659802 449
2 3300005436 Ga0070713_100072727 Ga0070713_1000727272 453
3 3300025928 Ga0207700_10030052 Ga0207700_100300522 453
4 iso_pu_bacteria 2870622029 2870625034 453
5 3300005327 Ga0070658_10041889 Ga0070658_100418893 454
6 3300005339 Ga0070660_100025537 Ga0070660_1000255374 454
7 3300005530 Ga0070679_100082218 Ga0070679_1000822183 454
8 3300005548 Ga0070665_100003941 Ga0070665_1000039415 454
9 3300005548 Ga0070665_100013613 Ga0070665_1000136135 454
10 3300005563 Ga0068855_100071620 Ga0068855_1000716204 454
11 3300005563 Ga0068855_100312014 Ga0068855_1003120142 454
12 3300005577 Ga0068857_100242076 Ga0068857_1002420762 454
13 3300013104 Ga0157370_10073060 Ga0157370_100730602 454
14 3300025913 Ga0207695_10044905 Ga0207695_100449052 454
15 3300025919 Ga0207657_10020355 Ga0207657_100203556 454
16 3300025920 Ga0207649_10075786 Ga0207649_100757862 454
17 3300025949 Ga0207667_10103505 Ga0207667_101035053 454
18 3300025949 Ga0207667_10171923 Ga0207667_101719232 454
19 3300026116 Ga0207674_10119663 Ga0207674_101196632 454
20 3300028379 Ga0268266_10000695 Ga0268266_100006957 454
21 3300028379 Ga0268266_10007369 Ga0268266_100073695 454
22 3300028800 Ga0265338_10009329 Ga0265338_100093299 454
23 3300037312 Ga0395899_0102683 Ga0395899_0102683_36_1448 454
24 3300037418 Ga0395900_0042632 Ga0395900_0042632_2045_3412 454
25 3300037466 Ga0395898_0028548 Ga0395898_0028548_2392_3759 454
26 3300049589 Ga0501073_0117405 Ga0501073_0117405_309_1676 454
27 iso_pu_bacteria 2643221649 2644279031 454
28 3300006237 Ga0097621_100000101 Ga0097621_10000010112 455
29 3300006358 Ga0068871_100000360 Ga0068871_10000036020 455
30 3300053140 Ga0500573_0068487 Ga0500573_0068487_624_2003 457
31 3300005536 Ga0070697_100172740 Ga0070697_1001727401 458
32 3300009176 Ga0105242_10046039 Ga0105242_100460393 459
33 3300025934 Ga0207686_10011354 Ga0207686_100113544 459
34 3300053140 Ga0500573_0062221 Ga0500573_0062221_168_1559 459
35 3300053142 Ga0500577_0019731 Ga0500577_0019731_146_1531 459
36 3300053153 Ga0500616_0000933 Ga0500616_0000933_18160_19566 459
37 3300046694 Ga0495649_0000619 Ga0495649_0000619_1416_2846 460
38 3300049823 Ga0501044_0058102 Ga0501044_0058102_305_1747 460
39 3300053177 Ga0500636_0039246 Ga0500636_0039246_699_2147 460
40 3300005937 Ga0081455_10011189 Ga0081455_100111893 462
41 3300050489 nmdc:mga03683_9506_c1 nmdc:mga03683_9506_c1_1213_2628 462
42 iso_pu_bacteria 2917554339 2917557030 462
43 3300053148 Ga0500590_047034 Ga0500590_047034_493_1884 463
44 3300005327 Ga0070658_10001940 Ga0070658_1000194011 464
45 3300005458 Ga0070681_10002623 Ga0070681_1000262314 464
46 3300005530 Ga0070679_100001367 Ga0070679_1000013673 464
47 3300009093 Ga0105240_10002789 Ga0105240_1000278913 464
48 3300039447 Ga0436361_0868648 Ga0436361_0868648_732_2198 464
49 3300053111 Ga0500572_000338 Ga0500572_000338_14962_16362 466
50 3300048910 Ga0496107_0092268 Ga0496107_0092268_188_1672 467
51 3300005336 Ga0070680_100000869 Ga0070680_1000008692 468
52 3300005341 Ga0070691_10012985 Ga0070691_100129853 468
53 3300005548 Ga0070665_100033819 Ga0070665_1000338192 468
54 3300005563 Ga0068855_100019955 Ga0068855_1000199553 468
55 3300006038 Ga0075365_10026544 Ga0075365_100265442 468
56 3300006195 Ga0075366_10000716 Ga0075366_100007162 468
57 3300025912 Ga0207707_10001478 Ga0207707_1000147820 468
58 3300025913 Ga0207695_10019166 Ga0207695_100191662 468
59 3300025915 Ga0207693_10099101 Ga0207693_100991012 468
60 3300025917 Ga0207660_10068092 Ga0207660_100680922 468
61 3300025921 Ga0207652_10002823 Ga0207652_1000282312 468
62 3300025949 Ga0207667_10013881 Ga0207667_100138813 468
63 3300028573 Ga0265334_10006804 Ga0265334_100068044 468
64 3300028794 Ga0307515_10066745 Ga0307515_100667453 468
65 3300028794 Ga0307515_10071955 Ga0307515_100719553 468
66 3300031251 Ga0265327_10016586 Ga0265327_100165864 468
67 3300035724 Ga0373933_0078053 Ga0373933_0078053_452_1858 468
68 3300044693 Ga0466961_0105528 Ga0466961_0105528_146_1564 468
69 3300044765 Ga0466970_0052694 Ga0466970_0052694_243_1661 468
70 3300046616 Ga0495668_0000019 Ga0495668_0000019_123521_124951 468
71 3300050492 nmdc:mga0yw44_20366_c1 nmdc:mga0yw44_20366_c1_1594_3000 468
72 3300050493 nmdc:mga0k408_43947_c1 nmdc:mga0k408_43947_c1_135_1541 468
73 3300050516 nmdc:mga0sz30_25113_c1 nmdc:mga0sz30_25113_c1_228_1634 468
74 3300053156 Ga0500622_0004510 Ga0500622_0004510_2025_3455 468
75 iso_pu_bacteria 2791355048 2792460656 468
76 iso_pu_bacteria 2843744320 2843747741 468
77 iso_pu_bacteria 2849573788 2849578383 468
78 3300053122 Ga0500608_000004 Ga0500608_000004_13368_14807 469
79 3300053136 Ga0500559_0006221 Ga0500559_0006221_694_2133 469
80 iso_pu_bacteria 2928531327 2928535073 469
81 3300046660 Ga0495625_0066146 Ga0495625_0066146_1012_2448 470
82 3300046810 Ga0495660_0003311 Ga0495660_0003311_5134_6564 470
83 3300048929 Ga0496126_0190175 Ga0496126_0190175_147_1562 471
84 3300003775 Ga0055524_1001209 Ga0055524_100120913 472
85 3300025299 Ga0209256_1000353 Ga0209256_100035321 472
86 3300046460 Ga0495638_0000672 Ga0495638_0000672_13155_14597 472
87 3300046471 Ga0495650_0000007 Ga0495650_0000007_483278_484720 472
88 3300046507 Ga0495606_0005968 Ga0495606_0005968_9369_10811 472
89 3300046512 Ga0495610_0000029 Ga0495610_0000029_142760_144202 472
90 3300046512 Ga0495610_0001407 Ga0495610_0001407_6588_8030 472
91 3300046518 Ga0495631_0006624 Ga0495631_0006624_2461_3903 472
92 3300046524 Ga0495648_0000120 Ga0495648_0000120_52191_53633 472
93 3300046530 Ga0495654_0000116 Ga0495654_0000116_77022_78464 472
94 3300046616 Ga0495668_0051717 Ga0495668_0051717_632_2074 472
95 3300046660 Ga0495625_0000025 Ga0495625_0000025_251744_253186 472
96 3300046660 Ga0495625_0001501 Ga0495625_0001501_2427_3869 472
97 3300046660 Ga0495625_0014633 Ga0495625_0014633_189_1625 472
98 3300046660 Ga0495625_0051319 Ga0495625_0051319_781_2217 472
99 3300047320 Ga0495672_0007059 Ga0495672_0007059_6305_7747 472
100 3300047469 Ga0495673_0000241 Ga0495673_0000241_34556_35998 472
101 3300047472 Ga0495686_0000515 Ga0495686_0000515_1948_3390 472
102 3300047472 Ga0495686_0004265 Ga0495686_0004265_9097_10539 472
103 3300048909 Ga0496106_0128425 Ga0496106_0128425_62_1498 472
104 3300049459 Ga0495678_001389 Ga0495678_001389_11356_12798 472
105 3300053086 Ga0500578_0000035 Ga0500578_0000035_111126_112568 472
106 3300053088 Ga0500644_0000134 Ga0500644_0000134_40037_41479 472
107 3300053118 Ga0500594_0000115 Ga0500594_0000115_3606_5048 472
108 3300053123 Ga0500614_005850 Ga0500614_005850_123_1565 472
109 3300053125 Ga0500618_000110 Ga0500618_000110_48167_49603 472
110 3300053136 Ga0500559_0000055 Ga0500559_0000055_17012_18448 472
111 3300053138 Ga0500564_000277 Ga0500564_000277_4165_5607 472
112 3300053730 Ga0500645_012351 Ga0500645_012351_337_1773 472
113 iso_pu_bacteria 2582581279 2585149345 472
114 iso_pu_bacteria 2643221545 2643750508 472
115 iso_pu_bacteria 2643221691 2644509603 472
116 iso_pu_bacteria 2884960567 2884964869 472
117 3300003781 Ga0055536_1000610 Ga0055536_100061011 473
118 3300003791 Ga0055530_10000405 Ga0055530_1000040534 473
119 3300003791 Ga0055530_10001260 Ga0055530_100012606 473
120 3300003791 Ga0055530_10003412 Ga0055530_100034126 473
121 3300003794 Ga0055531_10000224 Ga0055531_1000022434 473
122 3300025292 Ga0209676_1000031 Ga0209676_1000031238 473
123 3300025292 Ga0209676_1000057 Ga0209676_1000057140 473
124 3300025298 Ga0209050_1000087 Ga0209050_100008734 473
125 3300025298 Ga0209050_1000096 Ga0209050_100009637 473
126 3300025304 Ga0209257_1000050 Ga0209257_1000050192 473
127 3300025304 Ga0209257_1003224 Ga0209257_10032242 473
128 3300046616 Ga0495668_0011259 Ga0495668_0011259_2541_3986 473
129 3300046660 Ga0495625_0012012 Ga0495625_0012012_1983_3428 473
130 3300048928 Ga0496125_0017478 Ga0496125_0017478_1140_2591 473
131 3300048929 Ga0496126_0006009 Ga0496126_0006009_3981_5432 473
132 3300053156 Ga0500622_0003549 Ga0500622_0003549_2615_4066 473
133 3300053156 Ga0500622_0009501 Ga0500622_0009501_3419_4840 473
134 3300053156 Ga0500622_0027969 Ga0500622_0027969_1005_2450 473
135 iso_pu_bacteria 2585428106 2587916343 473
136 iso_pu_bacteria 2643221640 2644226148 473
137 iso_pu_bacteria 2643221642 2644235636 473
138 iso_pu_bacteria 2857504554 2857509029 473
139 iso_pu_bacteria 2939669807 2939670770 474
140 3300031251 Ga0265327_10006281 Ga0265327_100062812 475
141 3300038741 Ga0400488_07576 Ga0400488_07576_2203_3648 475
142 3300039110 Ga0400487_13235 Ga0400487_13235_600_2045 475
143 3300046520 Ga0495637_0013505 Ga0495637_0013505_2385_3845 475
144 3300047472 Ga0495686_0027990 Ga0495686_0027990_2159_3619 475
145 3300048924 Ga0496121_0000854 Ga0496121_0000854_15407_16867 475
146 3300025299 Ga0209256_1005864 Ga0209256_10058648 476
147 iso_pu_bacteria 2849560528 2849565387 476
148 iso_pu_bacteria 2851153111 2851153839 476
149 iso_pu_bacteria 2898329390 2898329488 476
150 3300005340 Ga0070689_100092407 Ga0070689_1000924074 477
151 3300003773 Ga0055537_1003899 Ga0055537_10038992 478
152 3300003790 Ga0055528_1014961 Ga0055528_10149612 478
153 3300025263 Ga0209565_1000414 Ga0209565_100041439 478
154 3300025273 Ga0209673_1001894 Ga0209673_10018948 478
155 3300025297 Ga0209758_1012356 Ga0209758_10123563 478
156 3300025304 Ga0209257_1000326 Ga0209257_10003262 478
157 3300046460 Ga0495638_0000055 Ga0495638_0000055_194325_195785 478
158 3300050496 nmdc:mga07m45_86678_c1 nmdc:mga07m45_86678_c1_145_1602 478
159 iso_pu_bacteria 2582581280 2585153265 478
160 iso_pu_bacteria 2582581293 2585196954 478
161 iso_pu_bacteria 2643221552 2643778950 478
162 iso_pu_bacteria 2643221584 2643930530 478
163 iso_pu_bacteria 2818991435 2819539253 478
164 iso_pu_bacteria 2818991454 2819648232 478
165 iso_pu_bacteria 2841911363 2841911994 478
166 iso_pu_bacteria 2841917233 2841922888 478
167 iso_pu_bacteria 2919450847 2919455901 478
168 iso_pu_bacteria 8001845381 8001849482 478
169 3300031251 Ga0265327_10000166 Ga0265327_1000016698 479
170 3300053119 Ga0500595_004486 Ga0500595_004486_4565_6004 479
171 iso_pu_bacteria 2928972540 2928975059 479
172 iso_pu_bacteria 2977240413 2977241948 479
173 3300006051 Ga0075364_10017312 Ga0075364_100173123 480
174 3300050491 nmdc:mga00v17_15556_c1 nmdc:mga00v17_15556_c1_1622_3070 480
175 iso_pu_bacteria 2597490356 2599104849 480
176 iso_pu_bacteria 2846952575 2846954431 480
177 iso_pu_bacteria 2848858292 2848859307 480
178 3300028563 Ga0265319_1002824 Ga0265319_10028241 481
179 3300028573 Ga0265334_10003316 Ga0265334_100033165 481
180 3300028577 Ga0265318_10003303 Ga0265318_100033032 481
181 3300028653 Ga0265323_10000250 Ga0265323_1000025033 481
182 3300028666 Ga0265336_10000724 Ga0265336_1000072414 481
183 3300028800 Ga0265338_10000131 Ga0265338_100001313 481
184 3300046519 Ga0495632_0039546 Ga0495632_0039546_882_2363 481
185 3300046460 Ga0495638_0000425 Ga0495638_0000425_666_2117 482
186 3300046506 Ga0495583_0041426 Ga0495583_0041426_113_1564 482
187 3300046519 Ga0495632_0009036 Ga0495632_0009036_598_2352 482
188 3300046522 Ga0495643_0001617 Ga0495643_0001617_632_2083 482
189 3300046524 Ga0495648_0002731 Ga0495648_0002731_13843_15294 482
190 3300046525 Ga0495663_0000069 Ga0495663_0000069_642_2093 482
191 3300046648 Ga0495611_0039447 Ga0495611_0039447_52_1503 482
192 3300046674 Ga0495588_0001442 Ga0495588_0001442_646_2097 482
193 3300046692 Ga0495671_0008068 Ga0495671_0008068_4199_5650 482
194 3300046694 Ga0495649_0036697 Ga0495649_0036697_1084_2535 482
195 3300047443 Ga0495687_026251 Ga0495687_026251_668_2119 482
196 3300047472 Ga0495686_0000023 Ga0495686_0000023_178611_180083 482
197 3300047472 Ga0495686_0002291 Ga0495686_0002291_643_2094 482
198 3300049459 Ga0495678_000059 Ga0495678_000059_638_2089 482
199 3300049460 Ga0495682_0000119 Ga0495682_0000119_545_1996 482
200 3300053086 Ga0500578_0001096 Ga0500578_0001096_548_1999 482
201 3300053138 Ga0500564_030555 Ga0500564_030555_659_2110 482
202 3300053141 Ga0500574_000008 Ga0500574_000008_48442_49893 482
203 3300053157 Ga0500624_000593 Ga0500624_000593_7816_9267 482
204 iso_pu_bacteria 2862993130 2862994328 482
205 3300005614 Ga0068856_100004294 Ga0068856_1000042949 483
206 3300013104 Ga0157370_10013559 Ga0157370_100135594 483
207 3300026078 Ga0207702_10000365 Ga0207702_100003653 483
208 3300031711 Ga0265314_10019892 Ga0265314_100198923 483
209 3300037466 Ga0395898_0016971 Ga0395898_0016971_3084_4586 483
210 3300038443 Ga0395901_0000282 Ga0395901_0000282_9808_11310 483
211 3300048910 Ga0496107_0039810 Ga0496107_0039810_323_1777 483
212 3300048911 Ga0496108_0001403 Ga0496108_0001403_4079_5533 483
213 3300048912 Ga0496109_0002483 Ga0496109_0002483_7963_9417 483
214 3300048913 Ga0496110_0006564 Ga0496110_0006564_1734_3188 483
215 3300048915 Ga0496112_0018408 Ga0496112_0018408_2360_3814 483
216 3300048925 Ga0496122_0002320 Ga0496122_0002320_22430_23887 483
217 3300048926 Ga0496123_0001110 Ga0496123_0001110_5090_6547 483
218 3300037418 Ga0395900_0054055 Ga0395900_0054055_1053_2546 485
219 3300005616 Ga0068852_100099354 Ga0068852_1000993541 489
220 3300013105 Ga0157369_10000192 Ga0157369_100001921 489
221 3300045051 Ga0451576_0041248 Ga0451576_0041248_1588_3057 489
222 3300053093 Ga0500651_0019348 Ga0500651_0019348_1352_2917 490
223 iso_pu_bacteria 2519103095 2519462673 491
224 iso_pu_bacteria 2582581311 2585291844 491
225 iso_pu_bacteria 2816332253 2817262566 491
226 iso_pu_bacteria 2816332256 2817276362 491
227 iso_pu_bacteria 2816332286 2817453803 491
228 iso_pu_bacteria 8020807995 8020809796 491
229 iso_pu_bacteria 8039098773 8039102812 491
230 iso_pu_bacteria 8040167225 8040168698 491
231 iso_pu_bacteria 8040173305 8040178215 491
232 3300003758 Ga0055532_1000334 Ga0055532_100033417 496
233 3300003760 Ga0055527_1000324 Ga0055527_100032417 496
234 3300003761 Ga0055535_1000703 Ga0055535_100070317 496
235 3300025228 Ga0209672_100026 Ga0209672_1000269 496
236 3300025229 Ga0209147_100033 Ga0209147_1000339 496
237 3300025242 Ga0209258_100051 Ga0209258_1000519 496
238 3300025256 Ga0209759_1004874 Ga0209759_10048743 496
239 3300025272 Ga0209455_1000154 Ga0209455_10001549 496
240 3300044656 Ga0466969_0031402 Ga0466969_0031402_470_1960 496
241 3300044683 Ga0466965_0000310 Ga0466965_0000310_6668_8158 496
242 3300044684 Ga0466966_0010464 Ga0466966_0010464_2447_3937 496
243 3300044693 Ga0466961_0000101 Ga0466961_0000101_7737_9227 496
244 3300044694 Ga0466963_0000409 Ga0466963_0000409_11484_12974 496
245 3300044735 Ga0466968_0016246 Ga0466968_0016246_1201_2691 496
246 3300044842 Ga0466957_0002516 Ga0466957_0002516_6810_8300 496
247 3300045049 Ga0466959_0082090 Ga0466959_0082090_817_2307 496
248 3300045836 Ga0466958_0011271 Ga0466958_0011271_2184_3674 496
249 3300061719 Ga0466962_0014469 Ga0466962_0014469_1443_2933 496
250 3300044684 Ga0466966_0000103 Ga0466966_0000103_33694_35196 498
251 3300044719 Ga0466971_0000699 Ga0466971_0000699_8556_10058 498
252 3300044842 Ga0466957_0002836 Ga0466957_0002836_4048_5550 498
253 3300061719 Ga0466962_0000190 Ga0466962_0000190_16484_17986 498
254 3300037418 Ga0395900_0000098 Ga0395900_0000098_137101_138606 500
255 3300003316 rootH1_10017273 rootH1_100172734 501

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00875

DNA_photolyase

DNA photolyase

99

267

0.96

PF03441

FAD_binding_7

FAD binding domain of DNA photolyase

368

564

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
4u63-assembly1.cif.gz_A crystal structure of a bacterial class iii photolyase from agrobacterium tumefaciens at 1.67a resolution 0.933 1 491
4u63-assembly1.cif.gz_A crystal structure of a bacterial class iii photolyase from agrobacterium tumefaciens at 1.67a resolution 0.9292 1 491
1owo-assembly1.cif.gz_A data4:photoreduced dna photolyase / received x-rays dose 1.2 exp15 photons/mm2 0.9267 10 492
6k8k-assembly2.cif.gz_B crystal structure of arabidopsis thaliana bic2-cry2 complex 0.9246 11 493
6k8k-assembly4.cif.gz_G crystal structure of arabidopsis thaliana bic2-cry2 complex 0.9235 11 493
ID Description Score Start End Superfamily
2vtbD03 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9622 322 440 1.10.579.10
1u3dA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9528 13 137 3.40.50.620
1dnpB03 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9365 306 490 1.10.579.10
1owoA03 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9352 306 490 1.10.579.10
af_P05066_403_565_1.10.579.10 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9342 311 489 1.10.579.10
ID Description Score Start End GO Terms
AF-A0A4U3AJ96-F1-model_v4 deleted 0.9996 344 447
AF-A0A257WX62-F1-model_v4 Deoxyribodipyrimidine photolyase 0.9803 11 426 GO:0003677
GO:0003904
GO:0006139
GO:0006950
GO:0009416
GO:0071949
AF-A0A3R7M9R4-F1-model_v4 Deoxyribodipyrimidine photo-lyase 0.978 292 438 GO:0003677
GO:0003904
GO:0006139
GO:0006950
GO:0071949
AF-D0E0R8-F1-model_v4 Cryptochrome 1 0.9769 282 438 GO:0003677
GO:0003904
GO:0005634
GO:0005737
GO:0006139
GO:0006950
GO:0032922
GO:0043153
GO:0071949
AF-A0A519JM51-F1-model_v4 Deoxyribodipyrimidine photo-lyase 0.9736 321 488 GO:0003677
GO:0003904
GO:0006139
GO:0006950
GO:0071949

Feature Viewer

pLDDT pTM Quality
92.46 0.91 High
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Predicted Structure (AlphaFold2)

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