F360704

General Info

Members Datasets Scaffolds Average Seq Length
249 111 498 125

Family's Representative Sequence

Representative Sequence 3300009101|Ga0105247_10956985|Ga0105247_109569852
Length 134
Sequence MANILIIEDNEQNLYLETFILEKHGHVVTAAHDGAQGIKLAQETLPTLILLDIQLPVMDGYAVAAELRRNPALANTPIVAVTSYAMAGDKETILAAGCNGYIEKPINPETFVAQVMACLEPQPQTDGGENGSVQ

Samples

Sample ID Description Type Environment
1 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
2 2162886006 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v1 Metagenome Rhizosphere
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
12 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
13 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
14 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
19 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
20 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
23 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
24 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
25 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
28 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
33 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
34 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
40 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
41 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
42 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
43 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
55 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
56 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
57 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
58 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
59 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
60 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
61 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
62 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
63 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
64 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
65 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
66 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
67 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
68 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
69 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
70 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
71 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
72 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
73 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
74 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
75 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
76 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
77 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
78 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
79 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
80 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
94 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
95 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
96 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
97 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
98 3300049656 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought Metagenome Rhizosphere
99 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
100 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
101 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
103 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
104 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
105 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
106 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
107 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
108 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
109 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
110 2643221603 Noviherbaspirillum sp. Root189 Isolate Unclassified
111 2740891818 Desulfofaba hansenii DSM 12642 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.2
Metatranscriptomes 0
Isolates 0.8

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.4
Nodule 0
Rhizoplane 0.8
Rhizosphere 95.18
Stem 0
Stem Tuber 0
Unclassified 16.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105247_10956985 3300009101 Bacteria 665
2 SwRhRL3b_contig_3584660 2162886006 Bacteria 2669
3 rootL2_10345687 3300003322 Bacteria 1431
4 Ga0065704_10124693 3300005289 Bacteria 1714
5 Ga0065712_10366655 3300005290 Bacteria 768
6 Ga0065707_10005017 3300005295 Bacteria 5412
7 Ga0065707_10094718 3300005295 Bacteria 3455
8 Ga0065707_10216177 3300005295 Unclassified 1244
9 Ga0065707_10450191 3300005295 Unclassified 801
10 Ga0070675_100819174 3300005354 Bacteria 851
11 Ga0070659_101889068 3300005366 Bacteria 535
12 Ga0070703_10118444 3300005406 Bacteria 957
13 Ga0070700_100048046 3300005441 Bacteria 2644
14 Ga0070694_100152226 3300005444 Unclassified 1690
15 Ga0070708_100210627 3300005445 Bacteria 1821
16 Ga0070685_10378077 3300005466 Bacteria 975
17 Ga0070706_100004028 3300005467 Bacteria 14272
18 Ga0070706_100580926 3300005467 Unclassified 1042
19 Ga0070706_100983677 3300005467 Unclassified 778
20 Ga0070707_100053355 3300005468 Bacteria 3876
21 Ga0070698_100031424 3300005471 Bacteria 5505
22 Ga0070698_100048049 3300005471 Bacteria 4361
23 Ga0070698_100903837 3300005471 Bacteria 828
24 Ga0070699_100003601 3300005518 Bacteria 13700
25 Ga0070699_100775286 3300005518 Unclassified 877
26 Ga0070697_100094995 3300005536 Bacteria 2471
27 Ga0070697_100309827 3300005536 Unclassified 1358
28 Ga0070672_100798190 3300005543 Bacteria 830
29 Ga0070686_100133697 3300005544 Bacteria 1718
30 Ga0070695_100264091 3300005545 Bacteria 1258
31 Ga0068859_100423999 3300005617 Bacteria 1427
32 Ga0068859_101097845 3300005617 Unclassified 875
33 Ga0068864_100189779 3300005618 Bacteria 1883
34 Ga0068861_101256968 3300005719 Unclassified 718
35 Ga0068863_100039491 3300005841 Bacteria 4489
36 Ga0068862_100498732 3300005844 Bacteria 1155
37 Ga0081539_10005360 3300005985 Bacteria 13138
38 Ga0075427_10000419 3300006194 Bacteria 4814
39 Ga0075428_100545601 3300006844 Bacteria 1239
40 Ga0075428_100674323 3300006844 Unclassified 1102
41 Ga0075428_101902639 3300006844 Unclassified 618
42 Ga0075430_100314621 3300006846 Bacteria 1295
43 Ga0075430_100677389 3300006846 Bacteria 850
44 Ga0075431_100108574 3300006847 Bacteria 2864
45 Ga0075431_100146008 3300006847 Bacteria 2438
46 Ga0075431_100913464 3300006847 Bacteria 847
47 Ga0075433_10204778 3300006852 Bacteria 1754
48 Ga0075434_100438534 3300006871 Unclassified 1327
49 Ga0075429_100198080 3300006880 Bacteria 1759
50 Ga0075429_100563298 3300006880 Bacteria 998
51 Ga0075429_101614810 3300006880 Bacteria 563
52 Ga0097620_100423957 3300006931 Bacteria 1427
53 Ga0097620_101098141 3300006931 Unclassified 875
54 Ga0099794_10018321 3300007265 Bacteria 3138
55 Ga0114129_10002415 3300009147 Bacteria 25945
56 Ga0114129_10057891 3300009147 Bacteria 5422
57 Ga0114129_10188108 3300009147 Unclassified 2805
58 Ga0114129_10286813 3300009147 Bacteria 2198
59 Ga0114129_10842866 3300009147 Bacteria 1166
60 Ga0114129_11816685 3300009147 Bacteria 741
61 Ga0114129_13362984 3300009147 Unclassified 515
62 Ga0105243_10199220 3300009148 Unclassified 1755
63 Ga0105243_10649513 3300009148 Bacteria 1022
64 Ga0105249_11257596 3300009553 Bacteria 812
65 Ga0105246_10279734 3300011119 Bacteria 1338
66 Ga0105246_11879686 3300011119 Bacteria 574
67 Ga0157380_13519545 3300014326 Unclassified 502
68 Ga0157377_11398345 3300014745 Bacteria 552
69 Ga0207643_10123551 3300025908 Bacteria 1535
70 Ga0207684_10037752 3300025910 Bacteria 4099
71 Ga0207646_10042786 3300025922 Bacteria 4069
72 Ga0207646_11820509 3300025922 Bacteria 520
73 Ga0207709_10338635 3300025935 Bacteria 1131
74 Ga0207709_10445045 3300025935 Bacteria 1000
75 Ga0207691_10339404 3300025940 Bacteria 1286
76 Ga0207651_12016992 3300025960 Bacteria 518
77 Ga0207708_10078440 3300026075 Bacteria 2536
78 Ga0207641_10076293 3300026088 Bacteria 2897
79 Ga0207641_11121728 3300026088 Bacteria 785
80 Ga0207641_12557716 3300026088 Bacteria 509
81 Ga0207676_10048721 3300026095 Bacteria 3291
82 Ga0207675_101271594 3300026118 Unclassified 756
83 Ga0209588_1003698 3300027671 Bacteria 4253
84 Ga0265332_10249134 3300031238 Bacteria 735
85 Ga0265320_10023340 3300031240 Bacteria 3294
86 Ga0316575_10368769 3300031665 Unclassified 613
87 Ga0265314_10122306 3300031711 Bacteria 1636
88 Ga0316578_10795087 3300031728 Unclassified 548
89 Ga0316577_10037544 3300031733 Bacteria 2708
90 Ga0316577_10137390 3300031733 Bacteria 1376
91 Ga0316577_10440327 3300031733 Bacteria 740
92 Ga0307413_10507065 3300031824 Bacteria 970
93 Ga0373932_0439088 3300035112 Bacteria 511
94 Ga0316574_0556525 3300035398 Unclassified 711
95 Ga0373933_0075782 3300035724 Bacteria 2054
96 Ga0316582_0019347 3300036647 Bacteria 3984
97 Ga0316582_0066249 3300036647 Bacteria 2328
98 Ga0316582_0636022 3300036647 Bacteria 734
99 Ga0316582_0654988 3300036647 Bacteria 722
100 Ga0316582_0745640 3300036647 Bacteria 672
101 Ga0316582_0982273 3300036647 Bacteria 577
102 Ga0316584_0004825 3300036712 Bacteria 8962
103 Ga0316584_0012019 3300036712 Bacteria 6098
104 Ga0316584_0088826 3300036712 Bacteria 2314
105 Ga0316584_0561810 3300036712 Bacteria 795
106 Ga0316584_0618604 3300036712 Unclassified 749
107 Ga0316581_0066481 3300037588 Bacteria 1107
108 Ga0400484_44159 3300038725 Bacteria 9745
109 Ga0400490_34840 3300038726 Bacteria 3429
110 Ga0400491_28990 3300038727 Bacteria 1109
111 Ga0400488_58635 3300038741 Bacteria 6612
112 Ga0400486_17446 3300038742 Bacteria 2684
113 Ga0451807_0165497 3300041486 Bacteria 501
114 Ga0451577_0000048 3300042876 Bacteria 309377
115 Ga0451577_0034260 3300042876 Bacteria 4578
116 Ga0451577_0042859 3300042876 Bacteria 4056
117 Ga0451577_0047975 3300042876 Bacteria 3817
118 Ga0451577_0052200 3300042876 Bacteria 3651
119 Ga0451577_0134187 3300042876 Bacteria 2222
120 Ga0451577_0140002 3300042876 Bacteria 2174
121 Ga0451577_0184626 3300042876 Bacteria 1881
122 Ga0451577_0188142 3300042876 Bacteria 1862
123 Ga0451577_0194531 3300042876 Bacteria 1830
124 Ga0451577_0249285 3300042876 Bacteria 1607
125 Ga0451577_0279341 3300042876 Unclassified 1513
126 Ga0451577_0364513 3300042876 Bacteria 1311
127 Ga0451577_0391044 3300042876 Bacteria 1262
128 Ga0451577_0592323 3300042876 Unclassified 1006
129 Ga0451577_0949395 3300042876 Bacteria 773
130 Ga0451577_0986438 3300042876 Unclassified 757
131 Ga0453683_0000041 3300044673 Bacteria 219754
132 Ga0453683_0000190 3300044673 Bacteria 85362
133 Ga0453683_0007118 3300044673 Bacteria 7620
134 Ga0453683_0039961 3300044673 Bacteria 2947
135 Ga0453683_0113168 3300044673 Bacteria 1707
136 Ga0453683_0115495 3300044673 Bacteria 1689
137 Ga0453683_0188052 3300044673 Bacteria 1310
138 Ga0453683_0233359 3300044673 Bacteria 1171
139 Ga0453683_0605820 3300044673 Bacteria 714
140 Ga0453683_0718396 3300044673 Bacteria 655
141 Ga0453683_1056643 3300044673 Unclassified 540
142 Ga0453683_1194655 3300044673 Unclassified 509
143 Ga0453684_0000067 3300044712 Bacteria 461903
144 Ga0453684_0000161 3300044712 Bacteria 298175
145 Ga0453684_0000240 3300044712 Bacteria 235672
146 Ga0453684_0000300 3300044712 Bacteria 208527
147 Ga0453684_0001143 3300044712 Bacteria 82832
148 Ga0453684_0001385 3300044712 Bacteria 70146
149 Ga0453684_0004071 3300044712 Bacteria 31771
150 Ga0453684_0007784 3300044712 Bacteria 19550
151 Ga0453684_0008605 3300044712 Bacteria 18197
152 Ga0453684_0010864 3300044712 Bacteria 15428
153 Ga0453684_0030928 3300044712 Bacteria 7546
154 Ga0453684_0033814 3300044712 Bacteria 7113
155 Ga0453684_0040141 3300044712 Bacteria 6364
156 Ga0453684_0041272 3300044712 Bacteria 6247
157 Ga0453684_0044132 3300044712 Bacteria 5974
158 Ga0453684_0045224 3300044712 Bacteria 5876
159 Ga0453684_0045320 3300044712 Bacteria 5869
160 Ga0453684_0050597 3300044712 Bacteria 5462
161 Ga0453684_0056926 3300044712 Bacteria 5067
162 Ga0453684_0060829 3300044712 Bacteria 4853
163 Ga0453684_0078798 3300044712 Bacteria 4121
164 Ga0453684_0100574 3300044712 Bacteria 3538
165 Ga0453684_0152588 3300044712 Unclassified 2743
166 Ga0453684_0162249 3300044712 Bacteria 2642
167 Ga0453684_0182688 3300044712 Bacteria 2461
168 Ga0453684_0246060 3300044712 Bacteria 2056
169 Ga0453684_0250765 3300044712 Bacteria 2033
170 Ga0453684_0269085 3300044712 Bacteria 1948
171 Ga0453684_0424107 3300044712 Bacteria 1485
172 Ga0453684_0454494 3300044712 Unclassified 1425
173 Ga0453684_0503181 3300044712 Bacteria 1341
174 Ga0453684_0532843 3300044712 Bacteria 1296
175 Ga0453684_0551438 3300044712 Bacteria 1270
176 Ga0453684_0568237 3300044712 Bacteria 1247
177 Ga0453684_0827802 3300044712 Bacteria 996
178 Ga0453684_0856332 3300044712 Bacteria 976
179 Ga0453684_1252533 3300044712 Bacteria 776
180 Ga0453684_1294501 3300044712 Unclassified 761
181 Ga0453684_2087548 3300044712 Bacteria 569
182 Ga0451576_0000059 3300045051 Bacteria 296795
183 Ga0451576_0001288 3300045051 Bacteria 43521
184 Ga0451576_0036543 3300045051 Bacteria 5206
185 Ga0451576_0071437 3300045051 Bacteria 3612
186 Ga0451576_0089699 3300045051 Bacteria 3198
187 Ga0451576_0117515 3300045051 Bacteria 2768
188 Ga0451576_0215488 3300045051 Unclassified 2005
189 Ga0451576_0215746 3300045051 Bacteria 2004
190 Ga0451576_0277877 3300045051 Bacteria 1751
191 Ga0451576_0320907 3300045051 Bacteria 1621
192 Ga0451576_0434923 3300045051 Bacteria 1377
193 Ga0451576_0626263 3300045051 Bacteria 1131
194 Ga0451576_1315668 3300045051 Bacteria 753
195 Ga0451576_2200427 3300045051 Bacteria 566
196 Ga0495629_0322491 3300046459 Bacteria 1056
197 Ga0496111_1206294 3300048914 Bacteria 536
198 Ga0496126_0390925 3300048929 Bacteria 1130
199 Ga0501031_0002354 3300049568 Bacteria 11976
200 Ga0501032_0060363 3300049569 Bacteria 2543
201 Ga0501033_0000687 3300049570 Bacteria 31338
202 Ga0501034_0012924 3300049571 Bacteria 8608
203 Ga0501034_1584962 3300049571 Bacteria 528
204 Ga0501036_0457604 3300049572 Bacteria 1063
205 Ga0501036_0458816 3300049572 Bacteria 1061
206 Ga0501037_0022402 3300049573 Bacteria 4673
207 Ga0501037_0140580 3300049573 Bacteria 1728
208 Ga0501038_0049048 3300049574 Bacteria 3651
209 Ga0501038_0450510 3300049574 Bacteria 990
210 Ga0501039_0056015 3300049575 Bacteria 3054
211 Ga0501041_0110473 3300049577 Bacteria 1706
212 Ga0501042_0613900 3300049578 Unclassified 791
213 Ga0501043_0014639 3300049579 Bacteria 6142
214 Ga0501046_0096437 3300049580 Bacteria 2272
215 Ga0501046_0259663 3300049580 Unclassified 1276
216 Ga0501047_0019081 3300049581 Bacteria 6579
217 Ga0501047_0019758 3300049581 Bacteria 6466
218 Ga0501071_0712738 3300049587 Bacteria 773
219 Ga0501072_0396215 3300049588 Unclassified 1095
220 Ga0501073_0012646 3300049589 Bacteria 6157
221 Ga0501074_0990246 3300049590 Unclassified 591
222 Ga0501076_0245863 3300049592 Bacteria 1463
223 Ga0501209_000151 3300049656 Bacteria 7685
224 Ga0501080_0004701 3300049742 Bacteria 12184
225 Ga0501083_0016037 3300049744 Bacteria 5247
226 Ga0501035_0118812 3300049822 Bacteria 2312
227 Ga0501044_0000060 3300049823 Bacteria 133279
228 Ga0501044_0019429 3300049823 Bacteria 7269
229 nmdc:mga05p37_144130_c2 3300050507 Unclassified 1671
230 nmdc:mga05p37_2179_c1 3300050507 Bacteria 22835
231 nmdc:mga05p37_252140_c1 3300050507 Unclassified 2116
232 nmdc:mga05p37_34932_c1 3300050507 Bacteria 5316
233 nmdc:mga05p37_638477_c1 3300050507 Bacteria 1195
234 nmdc:mga05p37_70728_c1 3300050507 Bacteria 4292
235 nmdc:mga05p37_7675_c1 3300050507 Bacteria 12729
236 nmdc:mga09592_1437075_c1 3300050508 Bacteria 563
237 nmdc:mga09592_156982_c1 3300050508 Unclassified 1964
238 nmdc:mga09592_2652_c1 3300050508 Bacteria 14469
239 nmdc:mga09592_49879_c1 3300050508 Bacteria 3530
240 nmdc:mga09592_819492_c1 3300050508 Unclassified 786
241 nmdc:mga0qj67_1541819_c1 3300050509 Unclassified 510
242 nmdc:mga06r32_152599_c1 3300050510 Bacteria 2289
243 nmdc:mga06r32_22080_c1 3300050510 Bacteria 5880
244 nmdc:mga06r32_612201_c1 3300050510 Bacteria 1059
245 nmdc:mga0n895_286160_c1 3300050512 Unclassified 1671
246 nmdc:mga0a205_317263_c1 3300050515 Bacteria 1430
247 Ga0500595_009652 3300053119 Bacteria 3886
248 2644031519 2643221603 Bacteria 6147767
249 2740991029 2740891818 Bacteria 6711283
250 Ga0105247_10956985
251 SwRhRL3b_contig_3584660
252 rootL2_10345687
253 Ga0065704_10124693
254 Ga0065712_10366655
255 Ga0065707_10005017
256 Ga0065707_10094718
257 Ga0065707_10216177
258 Ga0065707_10450191
259 Ga0070675_100819174
260 Ga0070659_101889068
261 Ga0070703_10118444
262 Ga0070700_100048046
263 Ga0070694_100152226
264 Ga0070708_100210627
265 Ga0070685_10378077
266 Ga0070706_100004028
267 Ga0070706_100580926
268 Ga0070706_100983677
269 Ga0070707_100053355
270 Ga0070698_100031424
271 Ga0070698_100048049
272 Ga0070698_100903837
273 Ga0070699_100003601
274 Ga0070699_100775286
275 Ga0070697_100094995
276 Ga0070697_100309827
277 Ga0070672_100798190
278 Ga0070686_100133697
279 Ga0070695_100264091
280 Ga0068859_100423999
281 Ga0068859_101097845
282 Ga0068864_100189779
283 Ga0068861_101256968
284 Ga0068863_100039491
285 Ga0068862_100498732
286 Ga0081539_10005360
287 Ga0075427_10000419
288 Ga0075428_100545601
289 Ga0075428_100674323
290 Ga0075428_101902639
291 Ga0075430_100314621
292 Ga0075430_100677389
293 Ga0075431_100108574
294 Ga0075431_100146008
295 Ga0075431_100913464
296 Ga0075433_10204778
297 Ga0075434_100438534
298 Ga0075429_100198080
299 Ga0075429_100563298
300 Ga0075429_101614810
301 Ga0097620_100423957
302 Ga0097620_101098141
303 Ga0099794_10018321
304 Ga0114129_10002415
305 Ga0114129_10057891
306 Ga0114129_10188108
307 Ga0114129_10286813
308 Ga0114129_10842866
309 Ga0114129_11816685
310 Ga0114129_13362984
311 Ga0105243_10199220
312 Ga0105243_10649513
313 Ga0105249_11257596
314 Ga0105246_10279734
315 Ga0105246_11879686
316 Ga0157380_13519545
317 Ga0157377_11398345
318 Ga0207643_10123551
319 Ga0207684_10037752
320 Ga0207646_10042786
321 Ga0207646_11820509
322 Ga0207709_10338635
323 Ga0207709_10445045
324 Ga0207691_10339404
325 Ga0207651_12016992
326 Ga0207708_10078440
327 Ga0207641_10076293
328 Ga0207641_11121728
329 Ga0207641_12557716
330 Ga0207676_10048721
331 Ga0207675_101271594
332 Ga0209588_1003698
333 Ga0265332_10249134
334 Ga0265320_10023340
335 Ga0316575_10368769
336 Ga0265314_10122306
337 Ga0316578_10795087
338 Ga0316577_10037544
339 Ga0316577_10137390
340 Ga0316577_10440327
341 Ga0307413_10507065
342 Ga0373932_0439088
343 Ga0316574_0556525
344 Ga0373933_0075782
345 Ga0316582_0019347
346 Ga0316582_0066249
347 Ga0316582_0636022
348 Ga0316582_0654988
349 Ga0316582_0745640
350 Ga0316582_0982273
351 Ga0316584_0004825
352 Ga0316584_0012019
353 Ga0316584_0088826
354 Ga0316584_0561810
355 Ga0316584_0618604
356 Ga0316581_0066481
357 Ga0400484_44159
358 Ga0400490_34840
359 Ga0400491_28990
360 Ga0400488_58635
361 Ga0400486_17446
362 Ga0451807_0165497
363 Ga0451577_0000048
364 Ga0451577_0034260
365 Ga0451577_0042859
366 Ga0451577_0047975
367 Ga0451577_0052200
368 Ga0451577_0134187
369 Ga0451577_0140002
370 Ga0451577_0184626
371 Ga0451577_0188142
372 Ga0451577_0194531
373 Ga0451577_0249285
374 Ga0451577_0279341
375 Ga0451577_0364513
376 Ga0451577_0391044
377 Ga0451577_0592323
378 Ga0451577_0949395
379 Ga0451577_0986438
380 Ga0453683_0000041
381 Ga0453683_0000190
382 Ga0453683_0007118
383 Ga0453683_0039961
384 Ga0453683_0113168
385 Ga0453683_0115495
386 Ga0453683_0188052
387 Ga0453683_0233359
388 Ga0453683_0605820
389 Ga0453683_0718396
390 Ga0453683_1056643
391 Ga0453683_1194655
392 Ga0453684_0000067
393 Ga0453684_0000161
394 Ga0453684_0000240
395 Ga0453684_0000300
396 Ga0453684_0001143
397 Ga0453684_0001385
398 Ga0453684_0004071
399 Ga0453684_0007784
400 Ga0453684_0008605
401 Ga0453684_0010864
402 Ga0453684_0030928
403 Ga0453684_0033814
404 Ga0453684_0040141
405 Ga0453684_0041272
406 Ga0453684_0044132
407 Ga0453684_0045224
408 Ga0453684_0045320
409 Ga0453684_0050597
410 Ga0453684_0056926
411 Ga0453684_0060829
412 Ga0453684_0078798
413 Ga0453684_0100574
414 Ga0453684_0152588
415 Ga0453684_0162249
416 Ga0453684_0182688
417 Ga0453684_0246060
418 Ga0453684_0250765
419 Ga0453684_0269085
420 Ga0453684_0424107
421 Ga0453684_0454494
422 Ga0453684_0503181
423 Ga0453684_0532843
424 Ga0453684_0551438
425 Ga0453684_0568237
426 Ga0453684_0827802
427 Ga0453684_0856332
428 Ga0453684_1252533
429 Ga0453684_1294501
430 Ga0453684_2087548
431 Ga0451576_0000059
432 Ga0451576_0001288
433 Ga0451576_0036543
434 Ga0451576_0071437
435 Ga0451576_0089699
436 Ga0451576_0117515
437 Ga0451576_0215488
438 Ga0451576_0215746
439 Ga0451576_0277877
440 Ga0451576_0320907
441 Ga0451576_0434923
442 Ga0451576_0626263
443 Ga0451576_1315668
444 Ga0451576_2200427
445 Ga0495629_0322491
446 Ga0496111_1206294
447 Ga0496126_0390925
448 Ga0501031_0002354
449 Ga0501032_0060363
450 Ga0501033_0000687
451 Ga0501034_0012924
452 Ga0501034_1584962
453 Ga0501036_0457604
454 Ga0501036_0458816
455 Ga0501037_0022402
456 Ga0501037_0140580
457 Ga0501038_0049048
458 Ga0501038_0450510
459 Ga0501039_0056015
460 Ga0501041_0110473
461 Ga0501042_0613900
462 Ga0501043_0014639
463 Ga0501046_0096437
464 Ga0501046_0259663
465 Ga0501047_0019081
466 Ga0501047_0019758
467 Ga0501071_0712738
468 Ga0501072_0396215
469 Ga0501073_0012646
470 Ga0501074_0990246
471 Ga0501076_0245863
472 Ga0501209_000151
473 Ga0501080_0004701
474 Ga0501083_0016037
475 Ga0501035_0118812
476 Ga0501044_0000060
477 Ga0501044_0019429
478 nmdc:mga05p37_144130_c2
479 nmdc:mga05p37_2179_c1
480 nmdc:mga05p37_252140_c1
481 nmdc:mga05p37_34932_c1
482 nmdc:mga05p37_638477_c1
483 nmdc:mga05p37_70728_c1
484 nmdc:mga05p37_7675_c1
485 nmdc:mga09592_1437075_c1
486 nmdc:mga09592_156982_c1
487 nmdc:mga09592_2652_c1
488 nmdc:mga09592_49879_c1
489 nmdc:mga09592_819492_c1
490 nmdc:mga0qj67_1541819_c1
491 nmdc:mga06r32_152599_c1
492 nmdc:mga06r32_22080_c1
493 nmdc:mga06r32_612201_c1
494 nmdc:mga0n895_286160_c1
495 nmdc:mga0a205_317263_c1
496 Ga0500595_009652
497 2644031519
498 2740991029

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

4

116

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
4hnr-assembly1.cif.gz_A high resolution structure of chemotaxis response regulator chey4 of vibrio cholerae 0.9568 1 118
4h60-assembly1.cif.gz_A high resolution structure of vibrio cholerae chemotaxis protein chey4 crystallized in low ph (4.0) condition 0.9557 1 118
7m0s-assembly1.cif.gz_B n-terminal domain of pmra from acinetobacter baumannii 0.9543 1 120
1nxt-assembly1.cif.gz_A-2 micarec ph 4.0 0.9516 3 120
6rh1-assembly1.cif.gz_C revisiting ph-gated conformational switch. complex hk853-rr468 d53a ph 7 0.9514 1 119
ID Description Score Start End Superfamily
af_P21866_1_80_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9727 1 83 3.40.50.2300
af_P76340_1_79_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9701 3 83 3.40.50.2300
af_O14283_368_529_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9658 3 120 3.40.50.2300
af_O07776_22_102_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9653 1 83 3.40.50.2300
af_P9WGN1_2_80_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9645 3 80 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A7X9JVE3-F1-model_v4 Response regulator 0.9903 3 120 GO:0000160
AF-A0A1Q7TY06-F1-model_v4 Response regulatory domain-containing protein 0.9894 3 120 GO:0000160
GO:0005524
GO:0016301
AF-A0A1Q7EP31-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.9875 3 120 GO:0000155
GO:0005524
AF-A0A7C3FPP9-F1-model_v4 Response regulator 0.9865 3 118 GO:0000160
AF-A0A2V6TSG3-F1-model_v4 Response regulatory domain-containing protein 0.9859 2 120 GO:0000160
GO:0005524
GO:0016301

Map