2162886006 Metadata

Taxon Oid 2162886006
Ncbi Domain *Microbiome
Sequencing Status Complete
Study Name Switchgrass rhizosphere microbial communities from Michigan, USA
Genome Name Sample Name Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v1
Sequencing Center DOE Joint Genome Institute (JGI)
Img Genome Id 2162886006
Ncbi Phylum Host-associated
Ncbi Class Plants
Ncbi Order Roots
Ncbi Family Rhizosphere
Ncbi Genus Soil
Ncbi Species Switchgrass rhizosphere microbial communities from Michigan, USA
Img Submission Id 2908
Gold Analysis Project Id Ga0025733
Gold Analysis Project Type Metagenome Analysis
Gold Sequencing Project Id Gp0051781
Gold Study Id Gs0045398
Add Date 06/02/2011 00:00:00
Assembly Method Newbler and/or Velvet
Comments released based on JGI ITS
Funding Agency DOE
Has Coverage True
Public Release Date 03/25/2022 00:00:00
Submission Type Reanalysis
In File Yes
Submitter Name Susannah Tringe
Rnd Project True
Alt2 Contact Emails [email protected]
Alt2 Contact Names James Tiedje
Contact Email [email protected]
Contact Name James Tiedje
Funding Program GLBRC
Funding Year 2010
Is Published False
Pmo Project Id 402779
Ncbi Bioproject Accession PRJNA336897
Ncbi Biosample Accession SAMN05518468
Sequencing Method Illumina
Sequencing Strategy Metagenome
Ecosystem Host-associated
Ecosystem Category Plants
Ecosystem Subtype Rhizosphere
Ecosystem Type Roots
Specific Ecosystem Soil
Cultured False
Elevation In Meters 250.000000
Geographic Location East Lansing, MI
Habitat Switchgrass rhizosphere
Isolation Switchgrass rhizosphere
Isolation Country 8855
Latitude 42.7948
Longitude -84.3938
Sample Collection Date 2009/1/1
Host Name Panicum virgatum
Genome Size Assembled 50824218
Gene Count Assembled 79305