F355259

General Info

Members Datasets Scaffolds Average Seq Length
243 155 220 618

Family's Representative Sequence

Representative Sequence 3300005262|Ga0065165_1002504|Ga0065165_10025046
Length 655
Sequence MCVIHRRVAVVHKPGGGLVLAIRTMVGRFDERFLEEVKSRLRPSDVIGRTVKLRKQGREYVGLSPFNKEKTPSFYVNDDKGQFFDFSSGKTGDLITFLQETERAAEAGVPLPAVDPRGAEQEKQRQGLADWLELAAQWFEGELKRPPGRDARAYLEKRGLPDKEWPRFRLGFSPPGRTALKDYLVTKGAKPAELVEAGLLIAPEDGGAPYDRFRDRIIFPILDVRGRVVSFGGRAMDPQARAKYLNGPETVVFHKGHQLYGLSEARKILAAAKADEDLPLVVVEGYMDVIACHRAGVPAVAAMGTALGEDQMEVLWRHHPEPTLCFDGDRAGRQAAARAMDRALPLLKPGKSFKFAIVEGGKDPDDVLREQGPAVLKQQLSQTTPFAEALFIREKDAEPLDTPERKTALKVRLRKLAATIADGDLSAAYKEDLLGRFEALSPRAAASQPVYEPGAAGRALAKHGWAKRKAALAGATPEGKTAALELQQSARPLAAALAKAALHDPAIIDDSIELVGSRGFGDEKLDRIAHELVQLRYEAGDAEFEVVVRRLRARGIDDEMLARMERDAGKAGVAAPFLDPSAARERTRALWRQAFELLMQLEALERAVEGAVSDVARDPSAITALGPLKAERDHLRRLINSDWTQDGGPPAALPH

Samples

Sample ID Description Type Environment
1 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
2 2643221552 Caulobacter sp. Root1472 Isolate Unclassified
3 2643221574 Brevundimonas sp. Root608 Isolate Unclassified
4 2643221598 Phenylobacterium sp. Root700 Isolate Unclassified
5 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
6 2643221640 Caulobacter sp. Root342 Isolate Unclassified
7 2643221642 Caulobacter sp. Root343 Isolate Unclassified
8 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
9 2643221663 Brevundimonas sp. Root1279 Isolate Unclassified
10 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
11 2643221699 Brevundimonas sp. Root1423 Isolate Unclassified
12 2791355048 Caulobacter flavus CGMCC1 15093 Isolate Rhizosphere
13 2843744320 Caulobacter flavus RHGG3 Isolate Unclassified
14 2849560528 Caulobacter zeae 410 Isolate Unclassified
15 2849573788 Caulobacter endophyticus 774 Isolate Unclassified
16 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
17 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
18 2898329390 Caulobacter sp. 602-2 Isolate Rhizosphere
19 2928531327 Caulobacter sp. 1776 Isolate Rhizosphere
20 2928972540 Brevundimonas sp. 1080 Isolate Rhizosphere
21 2941485952 Brevundimonas faecalis 2814 Isolate Rhizosphere
22 2977240413 Brevundimonas vesicularis SORGH_AS 431 Isolate Unclassified
23 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
24 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
25 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
26 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
27 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
28 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
29 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
30 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
31 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
32 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
33 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
34 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
35 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
36 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
37 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
38 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
39 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
40 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
41 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
42 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
43 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
44 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
45 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
46 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
47 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
48 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
49 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
50 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
55 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
56 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
57 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
58 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
59 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
60 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
63 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
89 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
90 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
91 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
92 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
93 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
94 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
95 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
96 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
97 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
98 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
99 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
100 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
101 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
102 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
103 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
104 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
105 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
106 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
107 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
108 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
109 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
110 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
111 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
112 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
113 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
114 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
115 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
116 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
117 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
118 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
119 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
120 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
121 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
122 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
123 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
124 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
125 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
126 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
127 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
128 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
129 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
130 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
131 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
132 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
133 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
134 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
135 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
136 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
137 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
140 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
141 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
142 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
143 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
144 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
145 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
146 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
147 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
148 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
149 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
150 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
151 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
152 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
153 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
154 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
155 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.12
Metatranscriptomes 0.41
Isolates 9.47

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.23
Nodule 0
Rhizoplane 3.29
Rhizosphere 65.84
Stem 0
Stem Tuber 0
Unclassified 15.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0006562J51391_1069963 3300003578 Bacteria 3179
2 Ga0055530_10002290 3300003791 Bacteria 12559
3 Ga0065165_1002504 3300005262 Bacteria 15355
4 Ga0065165_1002716 3300005262 Bacteria 14177
5 Ga0070670_100000009 3300005331 Bacteria 291074
6 Ga0070670_100037751 3300005331 Bacteria 4155
7 Ga0070666_10017410 3300005335 Bacteria 4607
8 Ga0070668_100000191 3300005347 Bacteria 40174
9 Ga0070668_100000555 3300005347 Bacteria 24962
10 Ga0070668_100003024 3300005347 Bacteria 12438
11 Ga0070668_100009642 3300005347 Bacteria 7161
12 Ga0070668_100019437 3300005347 Bacteria 5112
13 Ga0070669_100013030 3300005353 Bacteria 5905
14 Ga0070671_100053264 3300005355 Bacteria 3364
15 Ga0070671_100057001 3300005355 Bacteria 3250
16 Ga0070659_100005136 3300005366 Bacteria 9388
17 Ga0070659_100128787 3300005366 Bacteria 2054
18 Ga0070667_100000078 3300005367 Bacteria 119527
19 Ga0070667_100006944 3300005367 Bacteria 9407
20 Ga0070681_10014639 3300005458 Bacteria 7803
21 Ga0070681_10120765 3300005458 Bacteria 2555
22 Ga0070679_100016316 3300005530 Bacteria 7159
23 Ga0070665_100001281 3300005548 Bacteria 30110
24 Ga0070665_100002379 3300005548 Bacteria 20778
25 Ga0070665_100011613 3300005548 Bacteria 8904
26 Ga0068855_100059639 3300005563 Bacteria 4464
27 Ga0068855_100182768 3300005563 Bacteria 2370
28 Ga0068864_100000052 3300005618 Bacteria 133777
29 Ga0068864_100000250 3300005618 Bacteria 47956
30 Ga0068864_100006930 3300005618 Bacteria 9297
31 Ga0068863_100000019 3300005841 Bacteria 205585
32 Ga0068863_100006335 3300005841 Bacteria 11605
33 Ga0068863_100014509 3300005841 Bacteria 7587
34 Ga0068863_100029203 3300005841 Bacteria 5264
35 Ga0068858_100000479 3300005842 Bacteria 41666
36 Ga0068858_100001420 3300005842 Bacteria 24630
37 Ga0068860_100000292 3300005843 Bacteria 70893
38 Ga0068860_100000651 3300005843 Bacteria 40516
39 Ga0068860_100003086 3300005843 Bacteria 17227
40 Ga0068862_100003472 3300005844 Bacteria 13555
41 Ga0068862_100007846 3300005844 Bacteria 8829
42 Ga0068862_100018954 3300005844 Bacteria 5734
43 Ga0075368_10006199 3300006042 Bacteria 4166
44 Ga0075364_10002414 3300006051 Bacteria 10469
45 Ga0075367_10004143 3300006178 Bacteria 7034
46 Ga0105250_10010470 3300009092 Bacteria 3865
47 Ga0105240_10008207 3300009093 Bacteria 14965
48 Ga0105240_10036381 3300009093 Bacteria 6334
49 Ga0105240_10036638 3300009093 Bacteria 6308
50 Ga0105248_10003187 3300009177 Bacteria 18185
51 Ga0105248_10004634 3300009177 Bacteria 15207
52 Ga0105248_10007703 3300009177 Bacteria 11833
53 Ga0105248_10062704 3300009177 Bacteria 4174
54 Ga0105238_10003874 3300009551 Bacteria 14857
55 Ga0105249_10001734 3300009553 Bacteria 19055
56 Ga0157373_10009051 3300013100 Bacteria 7368
57 Ga0157373_10009308 3300013100 Bacteria 7262
58 Ga0157370_10097002 3300013104 Bacteria 2765
59 Ga0157369_10030218 3300013105 Bacteria 5977
60 Ga0163162_10049072 3300013306 Bacteria 4230
61 Ga0163162_10088379 3300013306 Bacteria 3178
62 Ga0157372_10157479 3300013307 Bacteria 2624
63 Ga0163163_10011534 3300014325 Bacteria 8026
64 Ga0163163_10062925 3300014325 Bacteria 3678
65 Ga0163163_10122513 3300014325 Bacteria 2635
66 Ga0157379_10000663 3300014968 Bacteria 27864
67 Ga0213872_10006271 3300021361 Bacteria 6001
68 Ga0213876_10000449 3300021384 Bacteria 33218
69 Ga0209026_1000525 3300025250 Bacteria 26985
70 Ga0209676_1000082 3300025292 Bacteria 280400
71 Ga0209676_1002687 3300025292 Bacteria 12029
72 Ga0209564_1004177 3300025295 Bacteria 9019
73 Ga0209758_1000215 3300025297 Bacteria 125461
74 Ga0209758_1001935 3300025297 Bacteria 22484
75 Ga0209050_1000049 3300025298 Bacteria 364096
76 Ga0209257_1000459 3300025304 Bacteria 75629
77 Ga0209257_1000924 3300025304 Bacteria 40835
78 Ga0209257_1002694 3300025304 Bacteria 16967
79 Ga0207680_10015161 3300025903 Bacteria 4016
80 Ga0207705_10008855 3300025909 Bacteria 7337
81 Ga0207695_10027052 3300025913 Bacteria 6390
82 Ga0207695_10046195 3300025913 Bacteria 4617
83 Ga0207695_10066155 3300025913 Bacteria 3713
84 Ga0207694_10023691 3300025924 Bacteria 4661
85 Ga0207650_10000014 3300025925 Bacteria 398063
86 Ga0207650_10024605 3300025925 Bacteria 4283
87 Ga0207644_10043282 3300025931 Bacteria 3194
88 Ga0207690_10003870 3300025932 Bacteria 8847
89 Ga0207706_10062040 3300025933 Bacteria 3293
90 Ga0207704_10000936 3300025938 Bacteria 12924
91 Ga0207711_10006276 3300025941 Bacteria 10029
92 Ga0207711_10049023 3300025941 Bacteria 3615
93 Ga0207679_10004918 3300025945 Bacteria 8331
94 Ga0207667_10027816 3300025949 Bacteria 6149
95 Ga0207667_10029796 3300025949 Bacteria 5912
96 Ga0207667_10099105 3300025949 Bacteria 3007
97 Ga0207712_10002549 3300025961 Bacteria 11703
98 Ga0207668_10000067 3300025972 Bacteria 83712
99 Ga0207668_10000073 3300025972 Bacteria 76313
100 Ga0207668_10005570 3300025972 Bacteria 7424
101 Ga0207668_10033871 3300025972 Bacteria 3387
102 Ga0207668_10056370 3300025972 Bacteria 2736
103 Ga0207658_10000485 3300025986 Bacteria 36718
104 Ga0207658_10005254 3300025986 Bacteria 8908
105 Ga0207658_10017820 3300025986 Bacteria 4893
106 Ga0207658_10034120 3300025986 Bacteria 3634
107 Ga0207703_10000138 3300026035 Bacteria 87646
108 Ga0207639_10017787 3300026041 Bacteria 5040
109 Ga0207702_10083912 3300026078 Bacteria 2773
110 Ga0207641_10000005 3300026088 Bacteria 470841
111 Ga0207641_10003291 3300026088 Bacteria 14370
112 Ga0207641_10016747 3300026088 Bacteria 6003
113 Ga0207641_10060513 3300026088 Bacteria 3228
114 Ga0207676_10000049 3300026095 Bacteria 133695
115 Ga0207676_10000069 3300026095 Bacteria 104526
116 Ga0268266_10000003 3300028379 Bacteria 1701703
117 Ga0268266_10000221 3300028379 Bacteria 99332
118 Ga0268266_10006930 3300028379 Bacteria 10309
119 Ga0268265_10003965 3300028380 Bacteria 10426
120 Ga0268265_10005509 3300028380 Bacteria 8639
121 Ga0268265_10046155 3300028380 Bacteria 3255
122 Ga0268264_10000055 3300028381 Bacteria 314947
123 Ga0268264_10000199 3300028381 Bacteria 122707
124 Ga0268264_10042261 3300028381 Bacteria 3773
125 Ga0307517_10000710 3300028786 Bacteria 57392
126 Ga0265338_10027047 3300028800 Bacteria 5766
127 Ga0265338_10050643 3300028800 Bacteria 3751
128 Ga0265338_10068662 3300028800 Bacteria 3052
129 Ga0265327_10000140 3300031251 Bacteria 158935
130 Ga0265327_10002306 3300031251 Bacteria 20397
131 Ga0265327_10011515 3300031251 Bacteria 6077
132 Ga0265327_10025140 3300031251 Bacteria 3479
133 Ga0307513_10000276 3300031456 Bacteria 74546
134 Ga0307513_10005771 3300031456 Bacteria 16278
135 Ga0307513_10033021 3300031456 Bacteria 5824
136 Ga0265314_10022702 3300031711 Bacteria 4803
137 Ga0307516_10000022 3300031730 Bacteria 191854
138 Ga0307406_10001735 3300031901 Bacteria 11953
139 Ga0307414_10079624 3300032004 Bacteria 2392
140 Ga0373936_0004465 3300035113 Bacteria 5292
141 Ga0373927_0000188 3300035695 Bacteria 49189
142 Ga0373925_0000067 3300037068 Bacteria 110348
143 Ga0395899_0000361 3300037312 Bacteria 55292
144 Ga0395900_0000237 3300037418 Bacteria 86507
145 Ga0395898_0002832 3300037466 Bacteria 19843
146 Ga0395905_0001770 3300037471 Bacteria 25092
147 Ga0395905_0088806 3300037471 Bacteria 2897
148 Ga0436364_0886514 3300037853 Bacteria 2264
149 Ga0395901_0000028 3300038443 Bacteria 242653
150 Ga0395901_0102593 3300038443 Bacteria 3002
151 Ga0436365_0392834 3300039437 Bacteria 5276
152 Ga0436365_0475330 3300039437 Bacteria 4239
153 Ga0436365_0785177 3300039437 Bacteria 135054
154 Ga0436361_0236226 3300039447 Bacteria 4800
155 Ga0436361_1046256 3300039447 Bacteria 8685
156 Ga0436363_1372154 3300039450 Bacteria 3306
157 Ga0495650_0000024 3300046471 Bacteria 496674
158 Ga0495643_0007327 3300046522 Bacteria 7129
159 Ga0495654_0000026 3300046530 Bacteria 234940
160 Ga0495609_0036241 3300046538 Bacteria 2228
161 Ga0495633_0000162 3300046558 Bacteria 87434
162 Ga0495668_0000587 3300046616 Bacteria 44244
163 Ga0495668_0024028 3300046616 Bacteria 3469
164 Ga0495611_0017620 3300046648 Bacteria 3057
165 Ga0495625_0002881 3300046660 Bacteria 17986
166 Ga0495625_0010558 3300046660 Bacteria 7627
167 Ga0495625_0028177 3300046660 Bacteria 4215
168 Ga0495625_0041012 3300046660 Bacteria 3371
169 Ga0495669_0000004 3300046684 Bacteria 208878
170 Ga0495669_0000438 3300046684 Bacteria 19819
171 Ga0495613_0000380 3300046689 Bacteria 38251
172 Ga0495649_0003163 3300046694 Bacteria 11250
173 Ga0495687_010687 3300047443 Bacteria 5012
174 Ga0495677_0012546 3300047445 Bacteria 3090
175 Ga0495686_0002721 3300047472 Bacteria 16176
176 Ga0495686_0005750 3300047472 Bacteria 9691
177 Ga0496101_0030923 3300048904 Bacteria 3759
178 Ga0496102_0043286 3300048905 Bacteria 4082
179 Ga0496102_0052558 3300048905 Bacteria 3713
180 Ga0496107_0064951 3300048910 Bacteria 2645
181 Ga0496109_0001775 3300048912 Bacteria 17923
182 Ga0496112_0043683 3300048915 Bacteria 4388
183 Ga0496115_0004795 3300048918 Bacteria 9813
184 Ga0496115_0015023 3300048918 Bacteria 5869
185 Ga0496116_0020458 3300048919 Bacteria 5025
186 Ga0496117_0024647 3300048920 Bacteria 4750
187 Ga0496118_0008872 3300048921 Bacteria 10277
188 Ga0496119_0018798 3300048922 Bacteria 5123
189 Ga0496121_0000067 3300048924 Bacteria 261543
190 Ga0496121_0037917 3300048924 Bacteria 4275
191 Ga0496122_0008141 3300048925 Bacteria 11417
192 Ga0496123_0000657 3300048926 Bacteria 57135
193 Ga0496125_0000771 3300048928 Bacteria 52335
194 Ga0501033_0003276 3300049570 Bacteria 13398
195 Ga0501034_0008187 3300049571 Bacteria 11087
196 Ga0501037_0023709 3300049573 Bacteria 4536
197 Ga0501257_001176 3300049686 Bacteria 5354
198 Ga0501044_0001952 3300049823 Bacteria 23850
199 nmdc:mga00v17_2018_c1 3300050491 Bacteria 10467
200 Ga0500635_0000374 3300053080 Bacteria 14027
201 Ga0500643_000547 3300053087 Bacteria 26273
202 Ga0500643_001767 3300053087 Bacteria 11894
203 Ga0500643_012976 3300053087 Bacteria 2964
204 Ga0500644_0010884 3300053088 Bacteria 2471
205 Ga0500641_0000303 3300053096 Bacteria 18342
206 Ga0500555_003709 3300053103 Bacteria 4342
207 Ga0500556_0000460 3300053104 Bacteria 28688
208 Ga0500572_002039 3300053111 Bacteria 5026
209 Ga0500595_003559 3300053119 Bacteria 7233
210 Ga0500595_004838 3300053119 Bacteria 5955
211 Ga0500608_000140 3300053122 Bacteria 29717
212 Ga0500608_004417 3300053122 Bacteria 5444
213 Ga0500559_0000006 3300053136 Bacteria 229895
214 Ga0500622_0003199 3300053156 Bacteria 11152
215 Ga0500622_0011542 3300053156 Bacteria 4809
216 Ga0500636_0030369 3300053177 Bacteria 3195
217 Ga0500637_0033199 3300053178 Bacteria 2881
218 Ga0500645_000922 3300053730 Bacteria 16914
219 Ga0500645_001269 3300053730 Bacteria 13238
220 Ga0500645_002534 3300053730 Bacteria 8062

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2643221699 2644550278 505
2 3300028800 Ga0265338_10068662 Ga0265338_100686622 516
3 3300039450 Ga0436363_1372154 Ga0436363_1372154_24_1769 527
4 3300005618 Ga0068864_100000250 Ga0068864_10000025050 541
5 3300005841 Ga0068863_100000019 Ga0068863_10000001927 541
6 3300009092 Ga0105250_10010470 Ga0105250_100104702 541
7 3300026088 Ga0207641_10000005 Ga0207641_10000005190 541
8 3300026095 Ga0207676_10000049 Ga0207676_1000004950 541
9 3300039437 Ga0436365_0392834 Ga0436365_0392834_1685_3577 546
10 3300005563 Ga0068855_100059639 Ga0068855_1000596392 553
11 3300009177 Ga0105248_10003187 Ga0105248_1000318717 556
12 3300025941 Ga0207711_10006276 Ga0207711_100062769 556
13 3300048922 Ga0496119_0018798 Ga0496119_0018798_1157_3058 556
14 3300048924 Ga0496121_0000067 Ga0496121_0000067_222681_224582 559
15 3300005262 Ga0065165_1002716 Ga0065165_10027164 562
16 3300025295 Ga0209564_1004177 Ga0209564_10041772 562
17 3300026078 Ga0207702_10083912 Ga0207702_100839122 562
18 3300021384 Ga0213876_10000449 Ga0213876_1000044912 563
19 3300037853 Ga0436364_0886514 Ga0436364_0886514_380_2233 563
20 3300039437 Ga0436365_0785177 Ga0436365_0785177_118113_119966 563
21 3300005842 Ga0068858_100000479 Ga0068858_10000047942 564
22 3300026035 Ga0207703_10000138 Ga0207703_1000013842 564
23 3300046522 Ga0495643_0007327 Ga0495643_0007327_3671_5614 565
24 3300046538 Ga0495609_0036241 Ga0495609_0036241_197_2140 565
25 3300046616 Ga0495668_0024028 Ga0495668_0024028_241_2184 565
26 3300047443 Ga0495687_010687 Ga0495687_010687_1671_3614 565
27 3300053119 Ga0500595_003559 Ga0500595_003559_3492_5435 565
28 3300053122 Ga0500608_004417 Ga0500608_004417_358_2301 565
29 3300048905 Ga0496102_0052558 Ga0496102_0052558_1029_2930 566
30 3300048920 Ga0496117_0024647 Ga0496117_0024647_1942_3843 566
31 3300048921 Ga0496118_0008872 Ga0496118_0008872_2661_4562 566
32 3300047472 Ga0495686_0002721 Ga0495686_0002721_12710_14638 567
33 3300048910 Ga0496107_0064951 Ga0496107_0064951_131_2062 569
34 3300048924 Ga0496121_0037917 Ga0496121_0037917_22_1953 569
35 3300013100 Ga0157373_10009051 Ga0157373_100090514 571
36 3300046660 Ga0495625_0002881 Ga0495625_0002881_3344_5269 572
37 3300038443 Ga0395901_0102593 Ga0395901_0102593_566_2464 573
38 3300013100 Ga0157373_10009308 Ga0157373_100093085 577
39 3300025297 Ga0209758_1001935 Ga0209758_100193522 577
40 3300035695 Ga0373927_0000188 Ga0373927_0000188_2345_4246 579
41 3300037068 Ga0373925_0000067 Ga0373925_0000067_8237_10138 579
42 3300053087 Ga0500643_012976 Ga0500643_012976_455_2305 581
43 3300005458 Ga0070681_10014639 Ga0070681_100146394 583
44 3300009093 Ga0105240_10036381 Ga0105240_100363814 583
45 3300013307 Ga0157372_10157479 Ga0157372_101574792 583
46 3300025913 Ga0207695_10027052 Ga0207695_100270524 583
47 3300025949 Ga0207667_10027816 Ga0207667_100278164 583
48 3300009093 Ga0105240_10036638 Ga0105240_100366388 584
49 3300025913 Ga0207695_10066155 Ga0207695_100661553 584
50 3300005841 Ga0068863_100029203 Ga0068863_1000292035 585
51 3300005843 Ga0068860_100003086 Ga0068860_10000308619 585
52 3300025972 Ga0207668_10056370 Ga0207668_100563702 585
53 3300025986 Ga0207658_10034120 Ga0207658_100341202 585
54 3300026088 Ga0207641_10016747 Ga0207641_100167472 585
55 3300028380 Ga0268265_10005509 Ga0268265_100055097 585
56 3300028381 Ga0268264_10042261 Ga0268264_100422612 585
57 3300053103 Ga0500555_003709 Ga0500555_003709_717_2627 585
58 3300048918 Ga0496115_0004795 Ga0496115_0004795_3657_5579 587
59 3300039447 Ga0436361_0236226 Ga0436361_0236226_2619_4496 588
60 3300047472 Ga0495686_0005750 Ga0495686_0005750_5841_7748 588
61 3300005844 Ga0068862_100018954 Ga0068862_1000189542 589
62 3300028380 Ga0268265_10046155 Ga0268265_100461552 589
63 3300053122 Ga0500608_000140 Ga0500608_000140_19828_21759 589
64 3300005347 Ga0070668_100009642 Ga0070668_1000096422 590
65 3300005548 Ga0070665_100002379 Ga0070665_10000237919 591
66 3300005843 Ga0068860_100000651 Ga0068860_10000065117 591
67 3300028379 Ga0268266_10000003 Ga0268266_10000003128 591
68 3300028381 Ga0268264_10000055 Ga0268264_1000005588 591
69 3300031456 Ga0307513_10033021 Ga0307513_100330213 591
70 3300048918 Ga0496115_0015023 Ga0496115_0015023_1984_3906 591
71 3300031730 Ga0307516_10000022 Ga0307516_1000002282 592
72 3300053088 Ga0500644_0010884 Ga0500644_0010884_282_2195 592
73 3300053156 Ga0500622_0003199 Ga0500622_0003199_4776_6647 592
74 3300046616 Ga0495668_0000587 Ga0495668_0000587_40292_42232 593
75 3300053096 Ga0500641_0000303 Ga0500641_0000303_9652_11538 593
76 3300046684 Ga0495669_0000004 Ga0495669_0000004_138643_140556 594
77 3300047445 Ga0495677_0012546 Ga0495677_0012546_234_2147 594
78 3300053730 Ga0500645_000922 Ga0500645_000922_1523_3439 594
79 3300026041 Ga0207639_10017787 Ga0207639_100177876 595
80 3300053080 Ga0500635_0000374 Ga0500635_0000374_5855_7798 595
81 3300053177 Ga0500636_0030369 Ga0500636_0030369_22_1965 595
82 3300053178 Ga0500637_0033199 Ga0500637_0033199_665_2608 595
83 3300031251 Ga0265327_10002306 Ga0265327_100023066 597
84 3300005347 Ga0070668_100019437 Ga0070668_1000194376 598
85 3300025972 Ga0207668_10033871 Ga0207668_100338712 598
86 3300031251 Ga0265327_10011515 Ga0265327_100115154 598
87 3300046660 Ga0495625_0010558 Ga0495625_0010558_4596_6521 598
88 3300005331 Ga0070670_100000009 Ga0070670_10000000980 599
89 3300005335 Ga0070666_10017410 Ga0070666_100174102 599
90 3300005347 Ga0070668_100000191 Ga0070668_10000019133 599
91 3300005367 Ga0070667_100000078 Ga0070667_10000007862 599
92 3300005548 Ga0070665_100001281 Ga0070665_10000128125 599
93 3300005618 Ga0068864_100000052 Ga0068864_10000005273 599
94 3300005841 Ga0068863_100014509 Ga0068863_1000145092 599
95 3300005843 Ga0068860_100000292 Ga0068860_10000029258 599
96 3300005844 Ga0068862_100003472 Ga0068862_1000034724 599
97 3300009553 Ga0105249_10001734 Ga0105249_100017342 599
98 3300013306 Ga0163162_10088379 Ga0163162_100883793 599
99 3300025903 Ga0207680_10015161 Ga0207680_100151614 599
100 3300025925 Ga0207650_10000014 Ga0207650_10000014231 599
101 3300025945 Ga0207679_10004918 Ga0207679_100049187 599
102 3300025961 Ga0207712_10002549 Ga0207712_1000254911 599
103 3300025972 Ga0207668_10000073 Ga0207668_1000007310 599
104 3300025986 Ga0207658_10000485 Ga0207658_1000048514 599
105 3300026088 Ga0207641_10003291 Ga0207641_100032915 599
106 3300026095 Ga0207676_10000069 Ga0207676_1000006924 599
107 3300028379 Ga0268266_10006930 Ga0268266_1000693011 599
108 3300028380 Ga0268265_10003965 Ga0268265_100039654 599
109 3300028381 Ga0268264_10000199 Ga0268264_1000019966 599
110 3300005366 Ga0070659_100128787 Ga0070659_1001287871 600
111 3300009177 Ga0105248_10004634 Ga0105248_100046346 600
112 3300025932 Ga0207690_10003870 Ga0207690_100038708 600
113 3300025938 Ga0207704_10000936 Ga0207704_1000093615 600
114 3300031901 Ga0307406_10001735 Ga0307406_100017357 600
115 3300046471 Ga0495650_0000024 Ga0495650_0000024_395269_397191 600
116 3300046530 Ga0495654_0000026 Ga0495654_0000026_111179_113098 600
117 3300046660 Ga0495625_0028177 Ga0495625_0028177_198_2117 600
118 3300053104 Ga0500556_0000460 Ga0500556_0000460_14313_16235 600
119 3300005563 Ga0068855_100182768 Ga0068855_1001827682 601
120 3300009093 Ga0105240_10008207 Ga0105240_1000820717 601
121 3300025913 Ga0207695_10046195 Ga0207695_100461956 601
122 3300025949 Ga0207667_10029796 Ga0207667_100297967 601
123 3300025949 Ga0207667_10099105 Ga0207667_100991052 601
124 3300046689 Ga0495613_0000380 Ga0495613_0000380_6334_8262 601
125 3300049686 Ga0501257_001176 Ga0501257_001176_1680_3584 601
126 iso_pu_bacteria 2643221699 2644552553 601
127 iso_pu_bacteria 2791355048 2792460999 601
128 iso_pu_bacteria 2843744320 2843749282 601
129 iso_pu_bacteria 2849560528 2849562741 601
130 iso_pu_bacteria 2849573788 2849577980 601
131 iso_pu_bacteria 2898329390 2898331360 601
132 3300037312 Ga0395899_0000361 Ga0395899_0000361_466_2394 602
133 3300037418 Ga0395900_0000237 Ga0395900_0000237_22817_24745 602
134 3300037466 Ga0395898_0002832 Ga0395898_0002832_1818_3746 602
135 3300037471 Ga0395905_0001770 Ga0395905_0001770_2919_4847 602
136 3300038443 Ga0395901_0000028 Ga0395901_0000028_179104_181032 602
137 3300053087 Ga0500643_000547 Ga0500643_000547_22423_24312 602
138 3300053730 Ga0500645_001269 Ga0500645_001269_7880_9769 602
139 iso_pu_bacteria 2643221552 2643781475 602
140 3300025304 Ga0209257_1000924 Ga0209257_100092421 603
141 iso_pu_bacteria 2857504554 2857507180 603
142 3300003791 Ga0055530_10002290 Ga0055530_100022904 604
143 3300005262 Ga0065165_1002504 Ga0065165_10025046 604
144 3300005355 Ga0070671_100057001 Ga0070671_1000570012 604
145 3300005844 Ga0068862_100007846 Ga0068862_1000078462 604
146 3300009177 Ga0105248_10062704 Ga0105248_100627042 604
147 3300025297 Ga0209758_1000215 Ga0209758_100021526 604
148 3300025298 Ga0209050_1000049 Ga0209050_1000049228 604
149 3300025304 Ga0209257_1002694 Ga0209257_10026942 604
150 3300028800 Ga0265338_10050643 Ga0265338_100506433 604
151 3300031251 Ga0265327_10025140 Ga0265327_100251402 604
152 3300031711 Ga0265314_10022702 Ga0265314_100227024 604
153 3300046694 Ga0495649_0003163 Ga0495649_0003163_2086_3966 604
154 3300028800 Ga0265338_10027047 Ga0265338_100270472 605
155 3300046684 Ga0495669_0000438 Ga0495669_0000438_16537_18426 605
156 3300005458 Ga0070681_10120765 Ga0070681_101207652 606
157 3300005530 Ga0070679_100016316 Ga0070679_1000163166 606
158 3300025250 Ga0209026_1000525 Ga0209026_100052526 606
159 3300025909 Ga0207705_10008855 Ga0207705_100088555 606
160 3300031251 Ga0265327_10000140 Ga0265327_10000140141 606
161 3300031456 Ga0307513_10000276 Ga0307513_1000027622 606
162 3300053111 Ga0500572_002039 Ga0500572_002039_1058_2977 606
163 3300053136 Ga0500559_0000006 Ga0500559_0000006_155353_157242 606
164 iso_pu_bacteria 2643221598 2643999029 606
165 3300009551 Ga0105238_10003874 Ga0105238_100038742 608
166 3300025924 Ga0207694_10023691 Ga0207694_100236915 608
167 3300005347 Ga0070668_100000555 Ga0070668_10000055525 609
168 3300005366 Ga0070659_100005136 Ga0070659_10000513611 609
169 3300005548 Ga0070665_100011613 Ga0070665_10001161310 609
170 3300025972 Ga0207668_10000067 Ga0207668_100000675 609
171 3300025986 Ga0207658_10017820 Ga0207658_100178204 609
172 3300028379 Ga0268266_10000221 Ga0268266_1000022157 609
173 3300035113 Ga0373936_0004465 Ga0373936_0004465_670_2589 609
174 3300053730 Ga0500645_002534 Ga0500645_002534_886_2793 609
175 iso_pu_bacteria 2884960567 2884961876 609
176 iso_pu_bacteria 2928531327 2928536004 609
177 iso_pu_bacteria 2941485952 2941489317 609
178 3300005347 Ga0070668_100003024 Ga0070668_1000030244 610
179 3300005618 Ga0068864_100006930 Ga0068864_1000069308 610
180 3300014325 Ga0163163_10062925 Ga0163163_100629253 610
181 3300014325 Ga0163163_10122513 Ga0163163_101225132 610
182 3300025292 Ga0209676_1002687 Ga0209676_10026879 610
183 3300025933 Ga0207706_10062040 Ga0207706_100620402 610
184 3300026088 Ga0207641_10060513 Ga0207641_100605133 610
185 3300028786 Ga0307517_10000710 Ga0307517_1000071047 610
186 3300031456 Ga0307513_10005771 Ga0307513_1000577111 610
187 3300032004 Ga0307414_10079624 Ga0307414_100796242 610
188 3300046648 Ga0495611_0017620 Ga0495611_0017620_857_2797 610
189 3300046660 Ga0495625_0041012 Ga0495625_0041012_1017_2984 610
190 3300048904 Ga0496101_0030923 Ga0496101_0030923_942_2852 610
191 3300048905 Ga0496102_0043286 Ga0496102_0043286_1826_3742 610
192 3300048912 Ga0496109_0001775 Ga0496109_0001775_13699_15615 610
193 3300048915 Ga0496112_0043683 Ga0496112_0043683_2160_4076 610
194 3300053087 Ga0500643_001767 Ga0500643_001767_7935_9875 610
195 3300053119 Ga0500595_004838 Ga0500595_004838_1952_3865 610
196 iso_pu_bacteria 2585428106 2587917565 610
197 iso_pu_bacteria 2643221614 2644086329 610
198 iso_pu_bacteria 2643221640 2644226910 610
199 iso_pu_bacteria 2643221642 2644233622 610
200 iso_pu_bacteria 2643221661 2644344827 610
201 iso_pu_bacteria 2643221666 2644367570 610
202 3300005331 Ga0070670_100037751 Ga0070670_1000377513 611
203 3300005353 Ga0070669_100013030 Ga0070669_1000130302 611
204 3300005355 Ga0070671_100053264 Ga0070671_1000532643 611
205 3300005367 Ga0070667_100006944 Ga0070667_1000069447 611
206 3300005841 Ga0068863_100006335 Ga0068863_10000633511 611
207 3300005842 Ga0068858_100001420 Ga0068858_1000014209 611
208 3300006042 Ga0075368_10006199 Ga0075368_100061993 611
209 3300006051 Ga0075364_10002414 Ga0075364_1000241410 611
210 3300006178 Ga0075367_10004143 Ga0075367_100041432 611
211 3300009177 Ga0105248_10007703 Ga0105248_1000770311 611
212 3300013306 Ga0163162_10049072 Ga0163162_100490723 611
213 3300014325 Ga0163163_10011534 Ga0163163_100115348 611
214 3300014968 Ga0157379_10000663 Ga0157379_100006636 611
215 3300025925 Ga0207650_10024605 Ga0207650_100246052 611
216 3300025931 Ga0207644_10043282 Ga0207644_100432823 611
217 3300025941 Ga0207711_10049023 Ga0207711_100490232 611
218 3300025972 Ga0207668_10005570 Ga0207668_100055702 611
219 3300025986 Ga0207658_10005254 Ga0207658_100052547 611
220 3300037471 Ga0395905_0088806 Ga0395905_0088806_673_2592 611
221 3300050491 nmdc:mga00v17_2018_c1 nmdc:mga00v17_2018_c1_432_2321 611
222 iso_pu_bacteria 2643221663 2644352991 611
223 3300021361 Ga0213872_10006271 Ga0213872_100062715 612
224 3300039437 Ga0436365_0475330 Ga0436365_0475330_975_2846 612
225 3300039447 Ga0436361_1046256 Ga0436361_1046256_188_2056 612
226 iso_pu_bacteria 2643221574 2643882792 612
227 3300048919 Ga0496116_0020458 Ga0496116_0020458_673_2565 614
228 3300048928 Ga0496125_0000771 Ga0496125_0000771_3627_5519 614
229 3300053156 Ga0500622_0011542 Ga0500622_0011542_2264_4198 614
230 3300049570 Ga0501033_0003276 Ga0501033_0003276_4229_6145 615
231 3300049571 Ga0501034_0008187 Ga0501034_0008187_6909_8828 615
232 3300049573 Ga0501037_0023709 Ga0501037_0023709_398_2314 615
233 3300049823 Ga0501044_0001952 Ga0501044_0001952_4826_6742 615
234 iso_pu_bacteria 2928972540 2928974045 615
235 iso_pu_bacteria 2977240413 2977240987 615
236 3300025292 Ga0209676_1000082 Ga0209676_100008298 617
237 3300025304 Ga0209257_1000459 Ga0209257_100045915 617
238 3300003578 Ga0006562J51391_1069963 Ga0006562J51391_10699631 619
239 3300013104 Ga0157370_10097002 Ga0157370_100970022 619
240 3300013105 Ga0157369_10030218 Ga0157369_100302182 619
241 3300046558 Ga0495633_0000162 Ga0495633_0000162_32665_34623 619
242 3300048925 Ga0496122_0008141 Ga0496122_0008141_7079_8938 619
243 3300048926 Ga0496123_0000657 Ga0496123_0000657_15323_17182 619

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08275

DNAG_N

DNA primase catalytic core, N-terminal domain

138

266

0.98

PF01807

zf-CHC2

CHC2 zinc finger

29

107

0.96

PF01751

Toprim

Toprim domain

279

358

0.92

PF13155

Toprim_2

Toprim-like

281

368

0.92

PF13662

Toprim_4

Toprim domain

279

355

0.88

PF13362

Toprim_3

Toprim domain

279

374

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
1d0q-assembly1.cif.gz_B structure of the zinc-binding domain of bacillus stearothermophilus dna primase 0.956 1 95
5vaz-assembly2.cif.gz_B crystal structure of a dna primase domain from pseudomonas aeruginosa 0.8936 112 423
1d0q-assembly1.cif.gz_B structure of the zinc-binding domain of bacillus stearothermophilus dna primase 0.8843 1 95
3b39-assembly1.cif.gz_A structure of the dnag primase catalytic domain bound to ssdna 0.8772 103 420
1eqn-assembly4.cif.gz_D e.coli primase catalytic core 0.8733 112 420
ID Description Score Start End Superfamily
af_P9WNW1_1_101_3.90.580.10 Alpha Beta;Alpha-Beta Complex;DNA Primase; Chain A;Zinc finger, CHC2-type?domain 0.956 2 94 3.90.580.10
4e2kA01 Alpha Beta;Alpha-Beta Complex;DNA primase DNAg catalytic core, N-terminal domain;DNA primase, catalytic core, N-terminal domain 0.9457 106 238 3.90.980.10
4e2kA01 Alpha Beta;Alpha-Beta Complex;DNA primase DNAg catalytic core, N-terminal domain;DNA primase, catalytic core, N-terminal domain 0.932 106 238 3.90.980.10
5gujA01 Alpha Beta;Alpha-Beta Complex;DNA primase DNAg catalytic core, N-terminal domain;DNA primase, catalytic core, N-terminal domain 0.9304 108 238 3.90.980.10
5gujA01 Alpha Beta;Alpha-Beta Complex;DNA primase DNAg catalytic core, N-terminal domain;DNA primase, catalytic core, N-terminal domain 0.917 108 238 3.90.980.10
ID Description Score Start End GO Terms
AF-A0A831Y4Q6-F1-model_v4 Zinc finger CHC2-type domain-containing protein 0.9826 1 88 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-A0A3D5UVF1-F1-model_v4 DNA primase 0.9752 1 86 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-A0A7S3YBI0-F1-model_v4 Zinc finger CHC2-type domain-containing protein 0.9697 7 90 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-W3Y5L9-F1-model_v4 deleted 0.9681 3 95
AF-A0A533ZZD2-F1-model_v4 Zinc finger CHC2-type domain-containing protein 0.9635 1 89 GO:0003677
GO:0003896
GO:0005737
GO:0008270

Feature Viewer

pLDDT pTM Quality
86.03 0.57 Medium
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map