F346028

General Info

Members Datasets Scaffolds Average Seq Length
233 116 466 370

Family's Representative Sequence

Representative Sequence 3300009093|Ga0105240_10203883|Ga0105240_102038831
Length 370
Sequence MPPTANDWLERIRALPLPSRVKVLNVCGGHERAISMSGLRTALPAAVELIPGPGCPVCVCPEEDVYEAIQLALHEKVTLLAFGDMLRVPVNVPRSEPRSLEQAKAAGADIRPIASPAEAVRIAESCRGPVVFFAAGFETTTAPVAAMLAEGVPDNLFVLLSGRLTWPAVAMLLESGDAGFDALIAPGHVSTVMGPEEWEFVPHRHHVPAAIAGFRPDTLLAALHAVLSQHLTGQASLQNCYPEVVRPGGNSRARRLLSQVMEVADANWRGIGMIPKSGFVLAETYSAHDARRALPAYRNDVRKRMGEMPPGCDCAHVVLGKLYPDQCRLYGVACTPRKPIGPCMVSDEGACRIWWASGKRRNERAAAATV

Samples

Sample ID Description Type Environment
1 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
2 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
3 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
4 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
5 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
6 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
7 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
8 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
9 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
10 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
11 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
12 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
13 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
14 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
15 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
16 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
17 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
18 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
19 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
20 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
21 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
22 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
40 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
41 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
42 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
43 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
44 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
45 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
46 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
47 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
48 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
49 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
50 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
51 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
52 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
53 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
54 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
55 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
56 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
57 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
58 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
59 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
60 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
61 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
62 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
63 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
64 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
65 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
66 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
67 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
68 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
69 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
70 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
71 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
72 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
73 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
74 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
75 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
76 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
77 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
78 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
79 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
80 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
81 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
82 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
83 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
98 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
99 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
100 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
101 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
102 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
103 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
104 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
105 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
106 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
107 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
108 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
109 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
112 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
113 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
114 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
115 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
116 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.57
Metatranscriptomes 0.43
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.86
Nodule 0
Rhizoplane 1.29
Rhizosphere 75.11
Stem 0
Stem Tuber 0
Unclassified 3.86

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105240_10203883 3300009093 Bacteria 2316
2 Ga0070676_10026409 3300005328 Bacteria 3288
3 Ga0070669_100007057 3300005353 Bacteria 8073
4 Ga0070669_100128353 3300005353 Bacteria 1942
5 Ga0070675_100122886 3300005354 Bacteria 2207
6 Ga0070673_100003966 3300005364 Bacteria 9303
7 Ga0070688_100042091 3300005365 Bacteria 2808
8 Ga0070678_100027589 3300005456 Bacteria 3857
9 Ga0070662_100016977 3300005457 Bacteria 4895
10 Ga0068867_100091511 3300005459 Bacteria 2309
11 Ga0070672_100203405 3300005543 Bacteria 1656
12 Ga0068864_100066150 3300005618 Bacteria 3137
13 Ga0068861_100095377 3300005719 Bacteria 2356
14 Ga0068851_10075069 3300005834 Bacteria 1756
15 Ga0068862_100102280 3300005844 Bacteria 2508
16 Ga0068865_100287236 3300006881 Bacteria 1312
17 Ga0105242_10113852 3300009176 Bacteria 2310
18 Ga0105248_10281250 3300009177 Bacteria 1873
19 Ga0105237_10376295 3300009545 Bacteria 1425
20 Ga0105239_10011915 3300010375 Bacteria 9700
21 Ga0157375_10070364 3300013308 Bacteria 3509
22 Ga0157380_10144306 3300014326 Bacteria 2049
23 Ga0207682_10001914 3300025893 Bacteria 9455
24 Ga0207645_10036582 3300025907 Bacteria 3152
25 Ga0207643_10001841 3300025908 Bacteria 11741
26 Ga0207681_10003166 3300025923 Bacteria 10334
27 Ga0207706_10082376 3300025933 Bacteria 2828
28 Ga0207686_10047916 3300025934 Bacteria 2644
29 Ga0207704_10043930 3300025938 Bacteria 2643
30 Ga0207691_10022506 3300025940 Bacteria 5943
31 Ga0207691_10073984 3300025940 Bacteria 3073
32 Ga0207689_10008637 3300025942 Bacteria 8871
33 Ga0207651_10025373 3300025960 Unclassified 3683
34 Ga0207668_10102000 3300025972 Bacteria 2134
35 Ga0207708_10094989 3300026075 Bacteria 2302
36 Ga0207648_10096115 3300026089 Bacteria 2592
37 Ga0207676_10230043 3300026095 Bacteria 1657
38 Ga0207675_100060449 3300026118 Bacteria 3537
39 Ga0207683_10053174 3300026121 Bacteria 3550
40 Ga0268265_10030459 3300028380 Bacteria 3886
41 Ga0265337_1008790 3300028556 Bacteria 3643
42 Ga0265334_10030379 3300028573 Bacteria 2163
43 Ga0265336_10000128 3300028666 Bacteria 55655
44 Ga0265338_10000119 3300028800 Bacteria 146599
45 Ga0265327_10001803 3300031251 Bacteria 25135
46 Ga0265327_10027354 3300031251 Bacteria 3285
47 Ga0265316_10049365 3300031344 Bacteria 3315
48 Ga0307509_10000022 3300031507 Bacteria 247822
49 Ga0316575_10002473 3300031665 Bacteria 6219
50 Ga0316575_10003727 3300031665 Bacteria 5291
51 Ga0316575_10013527 3300031665 Bacteria 3050
52 Ga0316575_10024412 3300031665 Bacteria 2340
53 Ga0316575_10033023 3300031665 Bacteria 2029
54 Ga0316575_10059206 3300031665 Unclassified 1528
55 Ga0316579_10001823 3300031691 Bacteria 7863
56 Ga0316579_10068664 3300031691 Bacteria 1676
57 Ga0316576_10036362 3300031727 Bacteria 3520
58 Ga0316576_10053053 3300031727 Bacteria 2954
59 Ga0316576_10196527 3300031727 Bacteria 1520
60 Ga0316578_10002152 3300031728 Bacteria 8488
61 Ga0316578_10018228 3300031728 Bacteria 3841
62 Ga0316578_10102033 3300031728 Unclassified 1720
63 Ga0307405_10083643 3300031731 Bacteria 2093
64 Ga0316577_10012705 3300031733 Bacteria 4592
65 Ga0316577_10015048 3300031733 Bacteria 4252
66 Ga0316577_10030025 3300031733 Bacteria 3033
67 Ga0316577_10044623 3300031733 Bacteria 2480
68 Ga0316577_10052851 3300031733 Bacteria 2267
69 Ga0316577_10123611 3300031733 Bacteria 1454
70 Ga0307413_10078114 3300031824 Bacteria 2111
71 Ga0307415_100030681 3300032126 Bacteria 3454
72 Ga0316583_10002626 3300032133 Bacteria 6274
73 Ga0316583_10025860 3300032133 Bacteria 2096
74 Ga0316583_10046796 3300032133 Bacteria 1526
75 Ga0316585_10000346 3300032137 Bacteria 10556
76 Ga0316585_10011973 3300032137 Unclassified 2563
77 Ga0316580_10006452 3300032139 Bacteria 3466
78 Ga0316580_10046666 3300032139 Bacteria 1335
79 Ga0316593_10007501 3300032168 Bacteria 2999
80 Ga0373952_0000307 3300035092 Bacteria 8142
81 Ga0373936_0000648 3300035113 Bacteria 12056
82 Ga0373960_0042611 3300035121 Bacteria 1318
83 Ga0316574_0001060 3300035398 Bacteria 12529
84 Ga0316574_0003267 3300035398 Bacteria 8328
85 Ga0316574_0003492 3300035398 Bacteria 8111
86 Ga0316574_0004931 3300035398 Bacteria 7069
87 Ga0316574_0006481 3300035398 Bacteria 6330
88 Ga0316574_0012976 3300035398 Bacteria 4779
89 Ga0316574_0017911 3300035398 Bacteria 4153
90 Ga0316574_0018164 3300035398 Bacteria 4128
91 Ga0316574_0027356 3300035398 Bacteria 3435
92 Ga0316574_0040026 3300035398 Bacteria 2885
93 Ga0316574_0042033 3300035398 Bacteria 2819
94 Ga0316574_0085889 3300035398 Bacteria 2002
95 Ga0316574_0207291 3300035398 Unclassified 1258
96 Ga0316582_0000983 3300036647 Bacteria 11857
97 Ga0316582_0006083 3300036647 Bacteria 6295
98 Ga0316582_0018394 3300036647 Bacteria 4066
99 Ga0316582_0033663 3300036647 Bacteria 3149
100 Ga0316582_0035936 3300036647 Bacteria 3063
101 Ga0316582_0050216 3300036647 Bacteria 2641
102 Ga0316582_0058644 3300036647 Bacteria 2462
103 Ga0316582_0121413 3300036647 Bacteria 1748
104 Ga0316582_0127382 3300036647 Archaea 1707
105 Ga0316584_0000566 3300036712 Bacteria 19912
106 Ga0316584_0008884 3300036712 Bacteria 6947
107 Ga0316584_0021880 3300036712 Unclassified 4655
108 Ga0316584_0025755 3300036712 Bacteria 4316
109 Ga0316584_0039759 3300036712 Bacteria 3502
110 Ga0316584_0063518 3300036712 Bacteria 2764
111 Ga0316584_0064891 3300036712 Bacteria 2735
112 Ga0316584_0065958 3300036712 Bacteria 2712
113 Ga0316584_0079207 3300036712 Bacteria 2461
114 Ga0316584_0094222 3300036712 Bacteria 2242
115 Ga0316584_0100558 3300036712 Bacteria 2165
116 Ga0316581_0007490 3300037588 Unclassified 2931
117 Ga0400484_03002 3300038725 Bacteria 8193
118 Ga0400484_18661 3300038725 Bacteria 23908
119 Ga0400484_40842 3300038725 Bacteria 7016
120 Ga0400490_20538 3300038726 Bacteria 12545
121 Ga0400490_21055 3300038726 Bacteria 18975
122 Ga0400490_25919 3300038726 Bacteria 9243
123 Ga0400490_38249 3300038726 Bacteria 12156
124 Ga0400490_41991 3300038726 Bacteria 13235
125 Ga0400490_50290 3300038726 Bacteria 4903
126 Ga0400490_52519 3300038726 Bacteria 13619
127 Ga0400491_08955 3300038727 Bacteria 1682
128 Ga0400491_26908 3300038727 Bacteria 3108
129 Ga0400485_02898 3300038735 Bacteria 20319
130 Ga0400485_03634 3300038735 Bacteria 2257
131 Ga0400485_11390 3300038735 Bacteria 4669
132 Ga0400485_12691 3300038735 Bacteria 11749
133 Ga0400488_02515 3300038741 Bacteria 19855
134 Ga0400488_20235 3300038741 Bacteria 2192
135 Ga0400488_24375 3300038741 Bacteria 6731
136 Ga0400488_55291 3300038741 Bacteria 2762
137 Ga0400488_58415 3300038741 Bacteria 3496
138 Ga0400488_60383 3300038741 Bacteria 4126
139 Ga0400488_62377 3300038741 Bacteria 17830
140 Ga0400486_02382 3300038742 Bacteria 1328
141 Ga0400486_04953 3300038742 Bacteria 4248
142 Ga0400486_06140 3300038742 Bacteria 135791
143 Ga0400486_22614 3300038742 Bacteria 13077
144 Ga0400486_30182 3300038742 Bacteria 34714
145 Ga0400483_072164 3300039062 Bacteria 20984
146 Ga0400483_141661 3300039062 Bacteria 13608
147 Ga0400483_150396 3300039062 Bacteria 11523
148 Ga0400483_164358 3300039062 Bacteria 22122
149 Ga0400483_196150 3300039062 Bacteria 11857
150 Ga0400483_203509 3300039062 Bacteria 8316
151 Ga0400483_229812 3300039062 Unclassified 3370
152 Ga0400483_281608 3300039062 Bacteria 2831
153 Ga0400489_90522 3300039093 Bacteria 16972
154 Ga0400487_00519 3300039110 Bacteria 7815
155 Ga0400487_01639 3300039110 Bacteria 2772
156 Ga0400487_02530 3300039110 Bacteria 6290
157 Ga0400487_08294 3300039110 Bacteria 2672
158 Ga0400487_24198 3300039110 Bacteria 78489
159 Ga0400487_24791 3300039110 Bacteria 81428
160 Ga0400487_31727 3300039110 Bacteria 18262
161 Ga0400487_41175 3300039110 Bacteria 2280
162 Ga0400487_41960 3300039110 Bacteria 7269
163 Ga0400487_53631 3300039110 Bacteria 5717
164 Ga0400487_54377 3300039110 Bacteria 7669
165 Ga0400487_63461 3300039110 Bacteria 1553
166 Ga0451577_0004938 3300042876 Bacteria 13873
167 Ga0451577_0107963 3300042876 Bacteria 2488
168 Ga0451577_0126256 3300042876 Bacteria 2292
169 Ga0451577_0153840 3300042876 Bacteria 2069
170 Ga0453683_0030105 3300044673 Bacteria 3433
171 Ga0453684_0006744 3300044712 Bacteria 21617
172 Ga0453684_0027042 3300044712 Bacteria 8249
173 Ga0453684_0033662 3300044712 Bacteria 7137
174 Ga0453684_0148442 3300044712 Bacteria 2789
175 Ga0451576_0039305 3300045051 Bacteria 5007
176 Ga0496110_0154039 3300048913 Bacteria 2082
177 Ga0496110_0370460 3300048913 Bacteria 1305
178 Ga0496114_0025312 3300048917 Bacteria 4851
179 Ga0496119_0000557 3300048922 Bacteria 50500
180 Ga0496120_0000014 3300048923 Bacteria 323163
181 Ga0496126_0013390 3300048929 Bacteria 8347
182 Ga0501031_0082823 3300049568 Bacteria 2091
183 Ga0501032_0009148 3300049569 Bacteria 7189
184 Ga0501032_0084493 3300049569 Bacteria 2110
185 Ga0501033_0036833 3300049570 Bacteria 3664
186 Ga0501033_0191283 3300049570 Bacteria 1464
187 Ga0501034_0011114 3300049571 Bacteria 9343
188 Ga0501036_0006873 3300049572 Bacteria 9248
189 Ga0501036_0079058 3300049572 Bacteria 2782
190 Ga0501037_0002091 3300049573 Bacteria 14466
191 Ga0501037_0020692 3300049573 Bacteria 4858
192 Ga0501037_0029251 3300049573 Bacteria 4070
193 Ga0501038_0006436 3300049574 Bacteria 10871
194 Ga0501039_0004202 3300049575 Bacteria 10842
195 Ga0501039_0004260 3300049575 Bacteria 10772
196 Ga0501040_0004014 3300049576 Bacteria 9562
197 Ga0501041_0001004 3300049577 Bacteria 15446
198 Ga0501042_0012421 3300049578 Bacteria 5770
199 Ga0501043_0096659 3300049579 Bacteria 2322
200 Ga0501046_0001929 3300049580 Bacteria 19693
201 Ga0501046_0011839 3300049580 Bacteria 7447
202 Ga0501048_0020105 3300049582 Bacteria 4897
203 Ga0501068_0033778 3300049584 Bacteria 3048
204 Ga0501069_0015368 3300049585 Bacteria 4102
205 Ga0501070_0003592 3300049586 Bacteria 13409
206 Ga0501070_0005421 3300049586 Bacteria 10889
207 Ga0501071_0004614 3300049587 Bacteria 8745
208 Ga0501071_0114204 3300049587 Bacteria 1997
209 Ga0501072_0006535 3300049588 Bacteria 8880
210 Ga0501072_0038932 3300049588 Bacteria 3732
211 Ga0501074_0133242 3300049590 Bacteria 1777
212 Ga0501075_0005677 3300049591 Bacteria 8539
213 Ga0501075_0077655 3300049591 Bacteria 2512
214 Ga0501075_0251195 3300049591 Unclassified 1348
215 Ga0501076_0023767 3300049592 Bacteria 4728
216 Ga0501076_0026071 3300049592 Bacteria 4524
217 Ga0501077_0003971 3300049593 Bacteria 8922
218 Ga0501077_0025447 3300049593 Bacteria 3759
219 Ga0501079_0004453 3300049741 Bacteria 10380
220 Ga0501079_0052316 3300049741 Bacteria 3152
221 Ga0501080_0008557 3300049742 Bacteria 9280
222 Ga0501081_0001709 3300049743 Bacteria 13630
223 Ga0501081_0099305 3300049743 Bacteria 2056
224 Ga0501035_0038891 3300049822 Bacteria 4307
225 Ga0501035_0121837 3300049822 Bacteria 2279
226 Ga0501044_0052723 3300049823 Bacteria 4189
227 Ga0501045_0007225 3300049824 Bacteria 7710
228 Ga0500639_069399 3300053163 Bacteria 1799
229 Ga0500637_0049347 3300053178 Bacteria 2395
230 Ga0501084_0021131 3300054114 Bacteria 5428
231 Ga0501082_0010233 3300060353 Bacteria 8074
232 Ga0530510_0001942 3300061734 Bacteria 14152
233 Ga0530510_0112976 3300061734 Bacteria 1990
234 Ga0105240_10203883
235 Ga0070676_10026409
236 Ga0070669_100007057
237 Ga0070669_100128353
238 Ga0070675_100122886
239 Ga0070673_100003966
240 Ga0070688_100042091
241 Ga0070678_100027589
242 Ga0070662_100016977
243 Ga0068867_100091511
244 Ga0070672_100203405
245 Ga0068864_100066150
246 Ga0068861_100095377
247 Ga0068851_10075069
248 Ga0068862_100102280
249 Ga0068865_100287236
250 Ga0105242_10113852
251 Ga0105248_10281250
252 Ga0105237_10376295
253 Ga0105239_10011915
254 Ga0157375_10070364
255 Ga0157380_10144306
256 Ga0207682_10001914
257 Ga0207645_10036582
258 Ga0207643_10001841
259 Ga0207681_10003166
260 Ga0207706_10082376
261 Ga0207686_10047916
262 Ga0207704_10043930
263 Ga0207691_10022506
264 Ga0207691_10073984
265 Ga0207689_10008637
266 Ga0207651_10025373
267 Ga0207668_10102000
268 Ga0207708_10094989
269 Ga0207648_10096115
270 Ga0207676_10230043
271 Ga0207675_100060449
272 Ga0207683_10053174
273 Ga0268265_10030459
274 Ga0265337_1008790
275 Ga0265334_10030379
276 Ga0265336_10000128
277 Ga0265338_10000119
278 Ga0265327_10001803
279 Ga0265327_10027354
280 Ga0265316_10049365
281 Ga0307509_10000022
282 Ga0316575_10002473
283 Ga0316575_10003727
284 Ga0316575_10013527
285 Ga0316575_10024412
286 Ga0316575_10033023
287 Ga0316575_10059206
288 Ga0316579_10001823
289 Ga0316579_10068664
290 Ga0316576_10036362
291 Ga0316576_10053053
292 Ga0316576_10196527
293 Ga0316578_10002152
294 Ga0316578_10018228
295 Ga0316578_10102033
296 Ga0307405_10083643
297 Ga0316577_10012705
298 Ga0316577_10015048
299 Ga0316577_10030025
300 Ga0316577_10044623
301 Ga0316577_10052851
302 Ga0316577_10123611
303 Ga0307413_10078114
304 Ga0307415_100030681
305 Ga0316583_10002626
306 Ga0316583_10025860
307 Ga0316583_10046796
308 Ga0316585_10000346
309 Ga0316585_10011973
310 Ga0316580_10006452
311 Ga0316580_10046666
312 Ga0316593_10007501
313 Ga0373952_0000307
314 Ga0373936_0000648
315 Ga0373960_0042611
316 Ga0316574_0001060
317 Ga0316574_0003267
318 Ga0316574_0003492
319 Ga0316574_0004931
320 Ga0316574_0006481
321 Ga0316574_0012976
322 Ga0316574_0017911
323 Ga0316574_0018164
324 Ga0316574_0027356
325 Ga0316574_0040026
326 Ga0316574_0042033
327 Ga0316574_0085889
328 Ga0316574_0207291
329 Ga0316582_0000983
330 Ga0316582_0006083
331 Ga0316582_0018394
332 Ga0316582_0033663
333 Ga0316582_0035936
334 Ga0316582_0050216
335 Ga0316582_0058644
336 Ga0316582_0121413
337 Ga0316582_0127382
338 Ga0316584_0000566
339 Ga0316584_0008884
340 Ga0316584_0021880
341 Ga0316584_0025755
342 Ga0316584_0039759
343 Ga0316584_0063518
344 Ga0316584_0064891
345 Ga0316584_0065958
346 Ga0316584_0079207
347 Ga0316584_0094222
348 Ga0316584_0100558
349 Ga0316581_0007490
350 Ga0400484_03002
351 Ga0400484_18661
352 Ga0400484_40842
353 Ga0400490_20538
354 Ga0400490_21055
355 Ga0400490_25919
356 Ga0400490_38249
357 Ga0400490_41991
358 Ga0400490_50290
359 Ga0400490_52519
360 Ga0400491_08955
361 Ga0400491_26908
362 Ga0400485_02898
363 Ga0400485_03634
364 Ga0400485_11390
365 Ga0400485_12691
366 Ga0400488_02515
367 Ga0400488_20235
368 Ga0400488_24375
369 Ga0400488_55291
370 Ga0400488_58415
371 Ga0400488_60383
372 Ga0400488_62377
373 Ga0400486_02382
374 Ga0400486_04953
375 Ga0400486_06140
376 Ga0400486_22614
377 Ga0400486_30182
378 Ga0400483_072164
379 Ga0400483_141661
380 Ga0400483_150396
381 Ga0400483_164358
382 Ga0400483_196150
383 Ga0400483_203509
384 Ga0400483_229812
385 Ga0400483_281608
386 Ga0400489_90522
387 Ga0400487_00519
388 Ga0400487_01639
389 Ga0400487_02530
390 Ga0400487_08294
391 Ga0400487_24198
392 Ga0400487_24791
393 Ga0400487_31727
394 Ga0400487_41175
395 Ga0400487_41960
396 Ga0400487_53631
397 Ga0400487_54377
398 Ga0400487_63461
399 Ga0451577_0004938
400 Ga0451577_0107963
401 Ga0451577_0126256
402 Ga0451577_0153840
403 Ga0453683_0030105
404 Ga0453684_0006744
405 Ga0453684_0027042
406 Ga0453684_0033662
407 Ga0453684_0148442
408 Ga0451576_0039305
409 Ga0496110_0154039
410 Ga0496110_0370460
411 Ga0496114_0025312
412 Ga0496119_0000557
413 Ga0496120_0000014
414 Ga0496126_0013390
415 Ga0501031_0082823
416 Ga0501032_0009148
417 Ga0501032_0084493
418 Ga0501033_0036833
419 Ga0501033_0191283
420 Ga0501034_0011114
421 Ga0501036_0006873
422 Ga0501036_0079058
423 Ga0501037_0002091
424 Ga0501037_0020692
425 Ga0501037_0029251
426 Ga0501038_0006436
427 Ga0501039_0004202
428 Ga0501039_0004260
429 Ga0501040_0004014
430 Ga0501041_0001004
431 Ga0501042_0012421
432 Ga0501043_0096659
433 Ga0501046_0001929
434 Ga0501046_0011839
435 Ga0501048_0020105
436 Ga0501068_0033778
437 Ga0501069_0015368
438 Ga0501070_0003592
439 Ga0501070_0005421
440 Ga0501071_0004614
441 Ga0501071_0114204
442 Ga0501072_0006535
443 Ga0501072_0038932
444 Ga0501074_0133242
445 Ga0501075_0005677
446 Ga0501075_0077655
447 Ga0501075_0251195
448 Ga0501076_0023767
449 Ga0501076_0026071
450 Ga0501077_0003971
451 Ga0501077_0025447
452 Ga0501079_0004453
453 Ga0501079_0052316
454 Ga0501080_0008557
455 Ga0501081_0001709
456 Ga0501081_0099305
457 Ga0501035_0038891
458 Ga0501035_0121837
459 Ga0501044_0052723
460 Ga0501045_0007225
461 Ga0500639_069399
462 Ga0500637_0049347
463 Ga0501084_0021131
464 Ga0501082_0010233
465 Ga0530510_0001942
466 Ga0530510_0112976

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01924

HypD

Hydrogenase formation hypA family

4

358

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3vys-assembly1.cif.gz_B crystal structure of the hypc-hypd-hype complex (form i) 0.912 8 362
3vys-assembly1.cif.gz_B crystal structure of the hypc-hypd-hype complex (form i) 0.8786 8 362
3ju2-assembly1.cif.gz_A crystal structure of protein smc04130 from sinorhizobium meliloti 1021 0.5733 173 216
8e92-assembly1.cif.gz_B d-cycloserine and glutamate bound human glun1a-glun2c nmda receptor in intact conformation 0.5128 159 217
5iej-assembly1.cif.gz_A solution structure of the bef3-activated conformation of sdrg from pseudomonas melonis fr1 0.4443 147 216
ID Description Score Start End Superfamily
2z1dB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HypD, alpha/beta domain 1 0.9184 8 254 3.40.50.11750
af_P24192_73_194_3.40.50.11740 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HypD, alpha/beta domain 2 0.9174 64 185 3.40.50.11740
af_Q58400_104_253_3.40.50.11750 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HypD, alpha/beta domain 1 0.9051 108 254 3.40.50.11750
af_P24192_73_194_3.40.50.11740 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HypD, alpha/beta domain 2 0.8959 64 185 3.40.50.11740
af_Q58400_104_253_3.40.50.11750 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HypD, alpha/beta domain 1 0.8826 108 254 3.40.50.11750
ID Description Score Start End GO Terms
AF-A0A7C1XFT8-F1-model_v4 Hydrogenase formation protein HypD 0.9885 4 282 GO:0005506
GO:0051539
GO:0051604
GO:0070025
AF-A0A3N5KXM1-F1-model_v4 Hydrogenase formation protein HypD 0.9817 6 326 GO:0005506
GO:0051539
GO:0051604
GO:0070025
AF-A0A7C1XFT8-F1-model_v4 Hydrogenase formation protein HypD 0.9815 4 282 GO:0005506
GO:0051539
GO:0051604
GO:0070025
AF-A0A451A9P2-F1-model_v4 Hydrogenase expression/formation protein HypD 0.9783 4 198 GO:0005506
GO:0051539
GO:0051604
GO:0070025
AF-A0A3N5KXM1-F1-model_v4 Hydrogenase formation protein HypD 0.9727 6 326 GO:0005506
GO:0051539
GO:0051604
GO:0070025

Map