F342016

General Info

Members Datasets Scaffolds Average Seq Length
229 189 208 364

Family's Representative Sequence

Representative Sequence 3300013104|Ga0157370_10015548|Ga0157370_100155486
Length 413
Sequence VVGEVFGACLFATNDFGRIKRSTQTKDTYMPGPLAGIRVLEVASIGPGPFCAMMLADMGAEVIRIDRRADVGRRPWVPPRADILSRGRRSLALDLKQPEGAQVLLDMAAQADLLVEGFRPGVMERLGVGPETCLARNPKLVYGRMTGWGQSGPLAQAAGHDINYIALSGALHGIGHPDTGPVPPLNLVGDFGGGGAMLAFGLACALIEARGSGRGQVVDAAMTEGSALLMSMFYSTHAAGRWHRLGENMLDGAAHFYGTYRCADGRWLALGSVEPQFYALLLDTLGIGNATEWPQHERARWPELKRKLAERFATRTRDDWCALMEGTDICFAPVLDLDEAPRHPHAVARGSFVSVDGTVQPAPVPRFSRSQPATPHGAPVVGAHSEALLAAFGFDASRVEALRAAGVFAQAAS

Samples

Sample ID Description Type Environment
1 2501025502 Paraburkholderia unamae MTI-641 Isolate Rhizosphere
2 2510917013 Paraburkholderia unamae MTI-641 Isolate Rhizosphere
3 2511231027 Phyllobacterium sp. YR531 Isolate Rhizosphere
4 2513237150 Cupriavidus taiwanensis STM6018 Isolate Nodule
5 2513237165 Cupriavidus neocaledonicus STM6070 Isolate Nodule
6 2643221541 Sphingomonas sp. Root50 Isolate Unclassified
7 2643221585 Pelomonas sp. Root662 Isolate Unclassified
8 2643221606 Sphingomonas sp. Root720 Isolate Unclassified
9 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
10 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
11 2643221656 Pelomonas sp. Root405 Isolate Unclassified
12 2643221671 Sphingomonas sp. Root1294 Isolate Unclassified
13 2738541307 Variovorax sp. GV008 Isolate Unclassified
14 2738541337 Pelomonas sp. BT06 Isolate Unclassified
15 2791355137 Paraburkholderia piptadeniae STM7183 Isolate Unclassified
16 2842871566 Phyllobacterium sp. R-73111 Isolate Unclassified
17 2901300506 Cupriavidus sp. UYMSc13B Isolate Unclassified
18 2904615490 Paraburkholderia franconis CNPSo 3157 Isolate Unclassified
19 2928521798 Phyllobacterium ifriqiyense 1451 Isolate Rhizosphere
20 2954011201 Phyllobacterium ifrigiyense W4I11 Isolate Rhizosphere
21 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
22 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
23 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
24 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
25 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
26 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
27 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
28 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
29 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
30 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
31 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
32 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
33 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
34 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
35 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
36 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
37 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
38 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
39 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
40 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
41 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
42 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
43 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
44 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
45 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
46 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
47 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
48 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
49 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
50 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
51 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
52 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
53 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
54 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
55 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
56 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
57 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
58 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
59 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
60 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
61 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
62 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
63 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
64 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
65 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
66 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
67 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
68 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
69 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
70 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
71 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
73 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
75 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
76 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
77 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300028017 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 Metagenome Rhizosphere
101 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
103 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
104 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
105 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
106 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
107 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
108 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
109 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
110 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
111 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
112 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
113 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
114 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
115 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
116 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
117 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
118 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
119 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
120 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
121 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
122 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
123 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
124 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
125 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
126 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
127 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
128 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
129 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
130 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
131 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
132 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
133 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
134 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
135 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
136 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
137 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
138 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
139 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
140 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
141 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
142 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
143 3300042126 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0218F_E14_070516_87 Metagenome Rhizosphere
144 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
145 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
146 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
147 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
148 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
149 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
150 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
151 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
152 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
153 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
154 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
155 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
156 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
157 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
158 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
159 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
160 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
161 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
162 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
163 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
164 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
165 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
166 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
167 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
168 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
169 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
170 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
171 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
172 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
173 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
174 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
175 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
176 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
177 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
178 3300049706 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control Metagenome Rhizosphere
179 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
180 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
181 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
182 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
183 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
184 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
185 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
186 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
187 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
188 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
189 644736347 Cupriavidus taiwanensis LMG 19424 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 90.83
Metatranscriptomes 0
Isolates 9.17

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.47
Nodule 1.31
Rhizoplane 1.75
Rhizosphere 64.63
Stem 0
Stem Tuber 0
Unclassified 14.85

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10015453 3300001989 Bacteria 2774
2 JGI25150J39212_1000352 3300002774 Bacteria 22643
3 JGI25406J46586_10001690 3300003203 Bacteria 10414
4 JGI25153J46596_10000007 3300003215 Bacteria 377573
5 JGI25153J46596_10000147 3300003215 Bacteria 71745
6 rootL2_10019537 3300003322 Bacteria 4718
7 rootH1_10054241 3300003323 Bacteria 2556
8 Ga0055526_1003019 3300003771 Bacteria 10980
9 Ga0055537_1001682 3300003773 Bacteria 8196
10 Ga0055536_1027410 3300003781 Bacteria 1575
11 Ga0055530_10001913 3300003791 Bacteria 14247
12 Ga0055540_1001953 3300003792 Bacteria 11524
13 Ga0055531_10000011 3300003794 Bacteria 195010
14 Ga0055531_10002195 3300003794 Bacteria 13295
15 Ga0055531_10002363 3300003794 Bacteria 12686
16 Ga0065165_1013063 3300005262 Bacteria 3327
17 Ga0065715_10112449 3300005293 Bacteria 2529
18 Ga0070676_10003043 3300005328 Bacteria 8664
19 Ga0070670_100000969 3300005331 Bacteria 22537
20 Ga0070677_10001227 3300005333 Bacteria 8229
21 Ga0068868_100040019 3300005338 Bacteria 3646
22 Ga0070669_100073217 3300005353 Bacteria 2537
23 Ga0070675_100002351 3300005354 Bacteria 14063
24 Ga0070671_100000797 3300005355 Bacteria 22748
25 Ga0070674_100002744 3300005356 Bacteria 9733
26 Ga0070713_100301222 3300005436 Unclassified 1476
27 Ga0070708_100052048 3300005445 Bacteria 3630
28 Ga0070678_100011661 3300005456 Bacteria 5432
29 Ga0068867_100002774 3300005459 Bacteria 12328
30 Ga0070672_100000926 3300005543 Bacteria 17645
31 Ga0070664_100099256 3300005564 Bacteria 2530
32 Ga0068852_100133355 3300005616 Bacteria 2290
33 Ga0068858_100010335 3300005842 Bacteria 8842
34 Ga0068862_100087266 3300005844 Bacteria 2714
35 Ga0081455_10025797 3300005937 Bacteria 5418
36 Ga0081539_10000169 3300005985 Bacteria 153327
37 Ga0081539_10028233 3300005985 Bacteria 3532
38 Ga0097621_100031523 3300006237 Bacteria 4208
39 Ga0075370_10002546 3300006353 Bacteria 8481
40 Ga0068871_100046709 3300006358 Bacteria 3488
41 Ga0068865_100009028 3300006881 Bacteria 6167
42 Ga0111539_10265531 3300009094 Bacteria 1998
43 Ga0105247_10001684 3300009101 Bacteria 15604
44 Ga0114129_10006946 3300009147 Bacteria 16105
45 Ga0105242_10006277 3300009176 Bacteria 9156
46 Ga0157370_10015548 3300013104 Bacteria 7737
47 Ga0157375_10028179 3300013308 Bacteria 5260
48 Ga0182008_10002889 3300014497 Bacteria 10629
49 Ga0157379_10013576 3300014968 Bacteria 7138
50 Ga0182006_1000214 3300015261 Bacteria 56285
51 Ga0213872_10000146 3300021361 Bacteria 64624
52 Ga0213876_10020374 3300021384 Bacteria 3504
53 Ga0207425_1000019 3300025245 Bacteria 399942
54 Ga0209129_1001264 3300025258 Bacteria 14480
55 Ga0209565_1000062 3300025263 Bacteria 184007
56 Ga0209673_1002907 3300025273 Bacteria 10823
57 Ga0209676_1000907 3300025292 Bacteria 37287
58 Ga0209676_1006782 3300025292 Bacteria 5560
59 Ga0209025_1000034 3300025294 Bacteria 413205
60 Ga0209025_1000762 3300025294 Bacteria 53705
61 Ga0209025_1000829 3300025294 Bacteria 49175
62 Ga0209564_1000361 3300025295 Bacteria 84398
63 Ga0209758_1000017 3300025297 Bacteria 754393
64 Ga0209758_1000019 3300025297 Bacteria 743682
65 Ga0209758_1003420 3300025297 Bacteria 14475
66 Ga0209758_1030630 3300025297 Bacteria 2225
67 Ga0209050_1000001 3300025298 Bacteria 3563507
68 Ga0209050_1014958 3300025298 Bacteria 3299
69 Ga0209050_1015604 3300025298 Bacteria 3176
70 Ga0209050_1017677 3300025298 Bacteria 2823
71 Ga0209051_1000109 3300025303 Bacteria 153862
72 Ga0209257_1000017 3300025304 Bacteria 866287
73 Ga0209257_1000748 3300025304 Bacteria 49128
74 Ga0209257_1000755 3300025304 Bacteria 48833
75 Ga0207682_10004370 3300025893 Bacteria 5923
76 Ga0207642_10030025 3300025899 Bacteria 2259
77 Ga0207710_10000929 3300025900 Bacteria 15612
78 Ga0207645_10015291 3300025907 Bacteria 5104
79 Ga0207643_10012470 3300025908 Bacteria 4593
80 Ga0207681_10061520 3300025923 Bacteria 2581
81 Ga0207650_10001017 3300025925 Bacteria 21068
82 Ga0207659_10000361 3300025926 Bacteria 27251
83 Ga0207644_10004630 3300025931 Bacteria 8950
84 Ga0207669_10001548 3300025937 Bacteria 9806
85 Ga0207691_10000792 3300025940 Bacteria 31429
86 Ga0207679_10057068 3300025945 Bacteria 2886
87 Ga0207651_10017262 3300025960 Bacteria 4259
88 Ga0207712_10016126 3300025961 Bacteria 4832
89 Ga0207668_10337642 3300025972 Bacteria 1256
90 Ga0207677_10133696 3300026023 Bacteria 1888
91 Ga0207703_10012037 3300026035 Bacteria 6738
92 Ga0207648_10002362 3300026089 Bacteria 20372
93 Ga0207683_10001592 3300026121 Bacteria 20430
94 Ga0207698_10155570 3300026142 Bacteria 1991
95 Ga0265356_1001845 3300028017 Bacteria 2976
96 Ga0268265_10245991 3300028380 Bacteria 1581
97 Ga0307517_10001511 3300028786 Bacteria 38826
98 Ga0307515_10018386 3300028794 Bacteria 12656
99 Ga0265332_10000003 3300031238 Bacteria 482849
100 Ga0265327_10007957 3300031251 Bacteria 8020
101 Ga0307513_10049357 3300031456 Bacteria 4560
102 Ga0307513_10191683 3300031456 Bacteria 1895
103 Ga0307509_10000004 3300031507 Bacteria 535507
104 Ga0307408_100000010 3300031548 Bacteria 420048
105 Ga0307408_100046176 3300031548 Bacteria 3115
106 Ga0307508_10002731 3300031616 Bacteria 18438
107 Ga0316576_10037880 3300031727 Bacteria 3454
108 Ga0307516_10000012 3300031730 Bacteria 224120
109 Ga0307405_10002920 3300031731 Bacteria 7709
110 Ga0316577_10023086 3300031733 Bacteria 3454
111 Ga0307410_10012430 3300031852 Bacteria 4924
112 Ga0307410_10015659 3300031852 Bacteria 4504
113 Ga0307406_10083594 3300031901 Bacteria 2129
114 Ga0307409_100124305 3300031995 Bacteria 2191
115 Ga0307416_100215218 3300032002 Bacteria 1837
116 Ga0307411_10000197 3300032005 Bacteria 19519
117 Ga0307411_10068698 3300032005 Bacteria 2390
118 Ga0373959_0002759 3300034820 Bacteria 2789
119 Ga0373940_0008770 3300035088 Bacteria 2331
120 Ga0373951_0005431 3300035091 Bacteria 2961
121 Ga0373939_0000009 3300035114 Bacteria 69322
122 Ga0373960_0002007 3300035121 Bacteria 4567
123 Ga0373943_0004117 3300035170 Bacteria 6597
124 Ga0316574_0035059 3300035398 Bacteria 3064
125 Ga0373931_0004641 3300035691 Bacteria 6283
126 Ga0373935_0040884 3300035692 Bacteria 2911
127 Ga0373927_0068411 3300035695 Bacteria 2298
128 Ga0373947_0003121 3300035725 Bacteria 9859
129 Ga0373947_0078525 3300035725 Bacteria 2038
130 Ga0316582_0008852 3300036647 Bacteria 5428
131 Ga0373925_0015134 3300037068 Bacteria 5576
132 Ga0373925_0143188 3300037068 Bacteria 1872
133 Ga0373925_0195123 3300037068 Bacteria 1608
134 Ga0395899_0006745 3300037312 Bacteria 8893
135 Ga0395899_0023157 3300037312 Bacteria 4707
136 Ga0395900_0000729 3300037418 Bacteria 43752
137 Ga0395900_0027364 3300037418 Bacteria 5839
138 Ga0395900_0123172 3300037418 Bacteria 2659
139 Ga0395898_0024149 3300037466 Bacteria 6134
140 Ga0395898_0024845 3300037466 Bacteria 6040
141 Ga0395898_0161207 3300037466 Bacteria 2145
142 Ga0395905_0002528 3300037471 Bacteria 20178
143 Ga0395905_0067439 3300037471 Bacteria 3351
144 Ga0395901_0002357 3300038443 Bacteria 19210
145 Ga0395901_0064773 3300038443 Bacteria 3804
146 Ga0395901_0119005 3300038443 Bacteria 2775
147 Ga0395901_0469867 3300038443 Bacteria 1284
148 Ga0436365_0739955 3300039437 Bacteria 3450
149 Ga0436361_0041739 3300039447 Bacteria 2640
150 Ga0436361_0305518 3300039447 Bacteria 51549
151 Ga0436361_0368060 3300039447 Bacteria 1274
152 Ga0436361_0946801 3300039447 Bacteria 3041
153 Ga0436363_0190747 3300039450 Bacteria 3578
154 Ga0439436_0003863 3300041404 Bacteria 4588
155 Ga0439439_0026908 3300041406 Bacteria 1451
156 Ga0439463_000852 3300042016 Bacteria 8363
157 Ga0450888_000277 3300042126 Bacteria 4782
158 Ga0439460_0000953 3300042461 Bacteria 6634
159 Ga0450893_0000602 3300042532 Bacteria 5123
160 Ga0451577_0030710 3300042876 Bacteria 4852
161 Ga0453684_0092600 3300044712 Bacteria 3725
162 Ga0453684_0120754 3300044712 Bacteria 3164
163 Ga0451576_0001147 3300045051 Bacteria 47866
164 Ga0451576_0020765 3300045051 Bacteria 7148
165 Ga0451576_0098153 3300045051 Bacteria 3046
166 Ga0451576_0139854 3300045051 Bacteria 2525
167 Ga0495638_0032495 3300046460 Bacteria 3345
168 Ga0495650_0004836 3300046471 Bacteria 9014
169 Ga0495637_0012637 3300046520 Bacteria 4031
170 Ga0495648_0076875 3300046524 Bacteria 1915
171 Ga0495609_0006609 3300046538 Bacteria 5897
172 Ga0495649_0074140 3300046694 Unclassified 1823
173 Ga0495636_0040634 3300047318 Bacteria 1928
174 Ga0495672_0001296 3300047320 Bacteria 24949
175 Ga0495626_0003191 3300048091 Bacteria 10662
176 Ga0496102_0000265 3300048905 Bacteria 67005
177 Ga0496102_0043936 3300048905 Bacteria 4053
178 Ga0496103_0047999 3300048906 Bacteria 2638
179 Ga0496105_0074013 3300048908 Bacteria 2814
180 Ga0496116_0000943 3300048919 Bacteria 35796
181 Ga0496117_0011269 3300048920 Bacteria 8022
182 Ga0496118_0005532 3300048921 Bacteria 14336
183 Ga0496119_0009215 3300048922 Bacteria 8517
184 Ga0496121_0004935 3300048924 Bacteria 17501
185 Ga0496122_0016686 3300048925 Bacteria 6924
186 Ga0496123_0003615 3300048926 Bacteria 17132
187 Ga0496124_0006344 3300048927 Bacteria 12910
188 Ga0496126_0001481 3300048929 Bacteria 36491
189 Ga0501034_0000312 3300049571 Bacteria 86122
190 Ga0501036_0006431 3300049572 Bacteria 9541
191 Ga0501047_0094029 3300049581 Bacteria 2877
192 Ga0501068_0000438 3300049584 Bacteria 21136
193 Ga0501070_0118966 3300049586 Bacteria 2183
194 Ga0501073_0002209 3300049589 Bacteria 14543
195 Ga0501235_000634 3300049669 Bacteria 7071
196 Ga0501221_012370 3300049704 Bacteria 1552
197 Ga0501229_009150 3300049706 Bacteria 1243
198 Ga0501080_0065052 3300049742 Bacteria 3392
199 Ga0501083_0012977 3300049744 Bacteria 5822
200 Ga0501035_0003001 3300049822 Bacteria 16204
201 Ga0501044_0089958 3300049823 Bacteria 3098
202 nmdc:mga07m45_68160_c1 3300050496 Bacteria 2023
203 nmdc:mga05p37_108929_c1 3300050507 Bacteria 3407
204 Ga0500595_001333 3300053119 Bacteria 13348
205 Ga0500658_0000047 3300053134 Bacteria 66543
206 Ga0500616_0030987 3300053153 Bacteria 2934
207 Ga0500616_0053046 3300053153 Bacteria 2129
208 Ga0501082_0001873 3300060353 Bacteria 18508

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2901300506 2901302147 295
2 3300037068 Ga0373925_0195123 Ga0373925_0195123_30_977 314
3 3300042876 Ga0451577_0030710 Ga0451577_0030710_3849_4841 322
4 3300035091 Ga0373951_0005431 Ga0373951_0005431_1966_2949 325
5 3300049706 Ga0501229_009150 Ga0501229_009150_36_1019 325
6 3300048905 Ga0496102_0043936 Ga0496102_0043936_2989_4008 326
7 3300021384 Ga0213876_10020374 Ga0213876_100203742 330
8 3300039437 Ga0436365_0739955 Ga0436365_0739955_1118_2122 330
9 3300009147 Ga0114129_10006946 Ga0114129_100069462 334
10 3300050507 nmdc:mga05p37_108929_c1 nmdc:mga05p37_108929_c1_270_1292 334
11 3300039447 Ga0436361_0946801 Ga0436361_0946801_1917_2993 335
12 3300002774 JGI25150J39212_1000352 JGI25150J39212_10003521 336
13 3300003215 JGI25153J46596_10000147 JGI25153J46596_1000014748 336
14 3300003771 Ga0055526_1003019 Ga0055526_10030198 336
15 3300003773 Ga0055537_1001682 Ga0055537_10016822 336
16 3300003781 Ga0055536_1027410 Ga0055536_10274101 336
17 3300003791 Ga0055530_10001913 Ga0055530_100019136 336
18 3300003792 Ga0055540_1001953 Ga0055540_10019537 336
19 3300003794 Ga0055531_10002195 Ga0055531_100021956 336
20 3300003794 Ga0055531_10002363 Ga0055531_100023635 336
21 3300005445 Ga0070708_100052048 Ga0070708_1000520483 336
22 3300025245 Ga0207425_1000019 Ga0207425_100001995 336
23 3300025258 Ga0209129_1001264 Ga0209129_10012641 336
24 3300025263 Ga0209565_1000062 Ga0209565_100006240 336
25 3300025273 Ga0209673_1002907 Ga0209673_10029073 336
26 3300025292 Ga0209676_1000907 Ga0209676_100090724 336
27 3300025292 Ga0209676_1006782 Ga0209676_10067826 336
28 3300025294 Ga0209025_1000829 Ga0209025_100082925 336
29 3300025295 Ga0209564_1000361 Ga0209564_100036126 336
30 3300025297 Ga0209758_1000019 Ga0209758_1000019492 336
31 3300025297 Ga0209758_1030630 Ga0209758_10306304 336
32 3300025298 Ga0209050_1000001 Ga0209050_10000011687 336
33 3300025298 Ga0209050_1014958 Ga0209050_10149582 336
34 3300025298 Ga0209050_1017677 Ga0209050_10176774 336
35 3300025303 Ga0209051_1000109 Ga0209051_100010943 336
36 3300025304 Ga0209257_1000748 Ga0209257_100074825 336
37 3300025304 Ga0209257_1000755 Ga0209257_100075525 336
38 iso_pu_bacteria 2738541337 2739055171 337
39 iso_pu_bacteria 2643221585 2643935171 338
40 iso_pu_bacteria 2643221639 2644221965 338
41 iso_pu_bacteria 2643221646 2644257253 338
42 iso_pu_bacteria 2643221656 2644314931 338
43 3300005436 Ga0070713_100301222 Ga0070713_1003012221 339
44 3300044712 Ga0453684_0092600 Ga0453684_0092600_2371_3396 339
45 iso_pu_bacteria 2513237150 2513954030 339
46 iso_pu_bacteria 2513237165 2514040150 339
47 iso_pu_bacteria 644736347 644746821 339
48 3300037471 Ga0395905_0002528 Ga0395905_0002528_1144_2172 340
49 iso_pu_bacteria 2511231027 2511391775 340
50 iso_pu_bacteria 2842871566 2842876157 340
51 iso_pu_bacteria 2928521798 2928526139 340
52 iso_pu_bacteria 2954011201 2954014963 340
53 3300003322 rootL2_10019537 rootL2_100195376 341
54 3300003323 rootH1_10054241 rootH1_100542414 341
55 3300006353 Ga0075370_10002546 Ga0075370_100025461 341
56 3300046524 Ga0495648_0076875 Ga0495648_0076875_816_1898 341
57 3300048908 Ga0496105_0074013 Ga0496105_0074013_446_1534 341
58 3300048919 Ga0496116_0000943 Ga0496116_0000943_33593_34681 341
59 3300048920 Ga0496117_0011269 Ga0496117_0011269_989_2077 341
60 3300048921 Ga0496118_0005532 Ga0496118_0005532_11479_12567 341
61 3300048922 Ga0496119_0009215 Ga0496119_0009215_5512_6600 341
62 3300048924 Ga0496121_0004935 Ga0496121_0004935_6103_7191 341
63 3300049581 Ga0501047_0094029 Ga0501047_0094029_736_1866 341
64 3300049823 Ga0501044_0089958 Ga0501044_0089958_1014_2144 341
65 3300050496 nmdc:mga07m45_68160_c1 nmdc:mga07m45_68160_c1_847_1878 341
66 3300003794 Ga0055531_10000011 Ga0055531_1000001150 342
67 3300025298 Ga0209050_1015604 Ga0209050_10156042 342
68 3300025304 Ga0209257_1000017 Ga0209257_1000017222 342
69 3300028794 Ga0307515_10018386 Ga0307515_100183867 342
70 3300032005 Ga0307411_10000197 Ga0307411_100001973 342
71 3300034820 Ga0373959_0002759 Ga0373959_0002759_1099_2133 342
72 3300035088 Ga0373940_0008770 Ga0373940_0008770_224_1258 342
73 3300035114 Ga0373939_0000009 Ga0373939_0000009_31014_32048 342
74 3300035121 Ga0373960_0002007 Ga0373960_0002007_159_1193 342
75 3300035691 Ga0373931_0004641 Ga0373931_0004641_3236_4270 342
76 3300042126 Ga0450888_000277 Ga0450888_000277_1787_2821 342
77 3300042532 Ga0450893_0000602 Ga0450893_0000602_1396_2430 342
78 3300045051 Ga0451576_0139854 Ga0451576_0139854_1023_2057 342
79 3300049669 Ga0501235_000634 Ga0501235_000634_3099_4133 342
80 3300049704 Ga0501221_012370 Ga0501221_012370_252_1286 342
81 3300025294 Ga0209025_1000762 Ga0209025_100076235 343
82 3300031548 Ga0307408_100000010 Ga0307408_100000010100 343
83 3300047318 Ga0495636_0040634 Ga0495636_0040634_231_1298 343
84 3300048925 Ga0496122_0016686 Ga0496122_0016686_1864_2949 344
85 3300025297 Ga0209758_1003420 Ga0209758_10034205 348
86 3300005262 Ga0065165_1013063 Ga0065165_10130631 349
87 3300031456 Ga0307513_10049357 Ga0307513_100493573 349
88 3300041406 Ga0439439_0026908 Ga0439439_0026908_354_1439 349
89 3300003215 JGI25153J46596_10000007 JGI25153J46596_10000007235 350
90 3300009094 Ga0111539_10265531 Ga0111539_102655312 350
91 3300025297 Ga0209758_1000017 Ga0209758_1000017232 350
92 3300049822 Ga0501035_0003001 Ga0501035_0003001_6634_7968 351
93 3300046538 Ga0495609_0006609 Ga0495609_0006609_969_2084 352
94 3300009176 Ga0105242_10006277 Ga0105242_100062772 353
95 3300031730 Ga0307516_10000012 Ga0307516_1000001236 353
96 3300047320 Ga0495672_0001296 Ga0495672_0001296_17539_18624 353
97 3300049572 Ga0501036_0006431 Ga0501036_0006431_3009_4841 353
98 3300005842 Ga0068858_100010335 Ga0068858_1000103352 356
99 3300026035 Ga0207703_10012037 Ga0207703_100120372 356
100 3300049744 Ga0501083_0012977 Ga0501083_0012977_2922_4010 356
101 3300060353 Ga0501082_0001873 Ga0501082_0001873_3468_4556 356
102 3300046520 Ga0495637_0012637 Ga0495637_0012637_2330_3439 358
103 3300048091 Ga0495626_0003191 Ga0495626_0003191_6509_7618 358
104 3300048926 Ga0496123_0003615 Ga0496123_0003615_8488_9615 358
105 3300053153 Ga0500616_0053046 Ga0500616_0053046_38_1192 358
106 3300003203 JGI25406J46586_10001690 JGI25406J46586_100016909 359
107 3300005985 Ga0081539_10000169 Ga0081539_1000016944 359
108 3300031727 Ga0316576_10037880 Ga0316576_100378804 359
109 3300031733 Ga0316577_10023086 Ga0316577_100230864 359
110 3300035398 Ga0316574_0035059 Ga0316574_0035059_1183_2322 359
111 3300036647 Ga0316582_0008852 Ga0316582_0008852_2481_3620 359
112 3300037418 Ga0395900_0000729 Ga0395900_0000729_14414_15565 359
113 3300038443 Ga0395901_0002357 Ga0395901_0002357_3498_4661 360
114 3300038443 Ga0395901_0469867 Ga0395901_0469867_118_1242 361
115 3300046471 Ga0495650_0004836 Ga0495650_0004836_6690_7793 361
116 iso_pu_bacteria 2738541307 2738883795 362
117 3300005985 Ga0081539_10028233 Ga0081539_100282335 363
118 3300048905 Ga0496102_0000265 Ga0496102_0000265_53744_54865 363
119 3300048906 Ga0496103_0047999 Ga0496103_0047999_1081_2202 363
120 3300031238 Ga0265332_10000003 Ga0265332_1000000331 364
121 3300039447 Ga0436361_0041739 Ga0436361_0041739_217_1317 364
122 3300005293 Ga0065715_10112449 Ga0065715_101124492 365
123 3300005328 Ga0070676_10003043 Ga0070676_100030435 365
124 3300005331 Ga0070670_100000969 Ga0070670_10000096912 365
125 3300005333 Ga0070677_10001227 Ga0070677_100012277 365
126 3300005338 Ga0068868_100040019 Ga0068868_1000400193 365
127 3300005353 Ga0070669_100073217 Ga0070669_1000732171 365
128 3300005354 Ga0070675_100002351 Ga0070675_10000235112 365
129 3300005355 Ga0070671_100000797 Ga0070671_10000079717 365
130 3300005356 Ga0070674_100002744 Ga0070674_1000027445 365
131 3300005456 Ga0070678_100011661 Ga0070678_1000116613 365
132 3300005459 Ga0068867_100002774 Ga0068867_1000027741 365
133 3300005543 Ga0070672_100000926 Ga0070672_1000009264 365
134 3300005564 Ga0070664_100099256 Ga0070664_1000992563 365
135 3300005616 Ga0068852_100133355 Ga0068852_1001333552 365
136 3300006237 Ga0097621_100031523 Ga0097621_1000315234 365
137 3300006358 Ga0068871_100046709 Ga0068871_1000467092 365
138 3300006881 Ga0068865_100009028 Ga0068865_1000090286 365
139 3300013308 Ga0157375_10028179 Ga0157375_100281792 365
140 3300025893 Ga0207682_10004370 Ga0207682_100043704 365
141 3300025899 Ga0207642_10030025 Ga0207642_100300252 365
142 3300025907 Ga0207645_10015291 Ga0207645_100152914 365
143 3300025908 Ga0207643_10012470 Ga0207643_100124702 365
144 3300025923 Ga0207681_10061520 Ga0207681_100615201 365
145 3300025925 Ga0207650_10001017 Ga0207650_1000101714 365
146 3300025926 Ga0207659_10000361 Ga0207659_100003614 365
147 3300025931 Ga0207644_10004630 Ga0207644_100046308 365
148 3300025937 Ga0207669_10001548 Ga0207669_100015485 365
149 3300025940 Ga0207691_10000792 Ga0207691_100007924 365
150 3300025945 Ga0207679_10057068 Ga0207679_100570683 365
151 3300025960 Ga0207651_10017262 Ga0207651_100172623 365
152 3300026023 Ga0207677_10133696 Ga0207677_101336962 365
153 3300026089 Ga0207648_10002362 Ga0207648_100023629 365
154 3300026121 Ga0207683_10001592 Ga0207683_1000159215 365
155 3300037312 Ga0395899_0006745 Ga0395899_0006745_3241_4341 365
156 3300037418 Ga0395900_0027364 Ga0395900_0027364_1943_3043 365
157 3300037466 Ga0395898_0024149 Ga0395898_0024149_4193_5293 365
158 3300039450 Ga0436363_0190747 Ga0436363_0190747_965_2104 365
159 3300025294 Ga0209025_1000034 Ga0209025_1000034107 366
160 3300028786 Ga0307517_10001511 Ga0307517_1000151124 366
161 3300031456 Ga0307513_10191683 Ga0307513_101916832 366
162 3300031616 Ga0307508_10002731 Ga0307508_100027317 366
163 3300031731 Ga0307405_10002920 Ga0307405_100029206 366
164 3300031852 Ga0307410_10012430 Ga0307410_100124302 366
165 3300031901 Ga0307406_10083594 Ga0307406_100835942 366
166 3300032002 Ga0307416_100215218 Ga0307416_1002152182 366
167 3300037312 Ga0395899_0023157 Ga0395899_0023157_2810_3919 366
168 3300037418 Ga0395900_0123172 Ga0395900_0123172_597_1706 366
169 3300037466 Ga0395898_0024845 Ga0395898_0024845_598_1707 366
170 3300037471 Ga0395905_0067439 Ga0395905_0067439_184_1293 366
171 3300038443 Ga0395901_0064773 Ga0395901_0064773_1907_3016 366
172 3300046460 Ga0495638_0032495 Ga0495638_0032495_579_1694 366
173 3300053134 Ga0500658_0000047 Ga0500658_0000047_22497_23597 366
174 3300031507 Ga0307509_10000004 Ga0307509_10000004134 367
175 3300046694 Ga0495649_0074140 Ga0495649_0074140_270_1418 367
176 3300044712 Ga0453684_0120754 Ga0453684_0120754_914_2056 369
177 3300045051 Ga0451576_0098153 Ga0451576_0098153_749_1891 369
178 3300009101 Ga0105247_10001684 Ga0105247_100016844 370
179 3300014968 Ga0157379_10013576 Ga0157379_100135762 370
180 3300025900 Ga0207710_10000929 Ga0207710_100009295 370
181 3300025961 Ga0207712_10016126 Ga0207712_100161264 370
182 3300028017 Ga0265356_1001845 Ga0265356_10018452 370
183 3300042016 Ga0439463_000852 Ga0439463_000852_4658_5776 370
184 3300042461 Ga0439460_0000953 Ga0439460_0000953_2813_3931 370
185 3300025972 Ga0207668_10337642 Ga0207668_103376421 371
186 3300031548 Ga0307408_100046176 Ga0307408_1000461762 371
187 3300031852 Ga0307410_10015659 Ga0307410_100156592 371
188 3300031995 Ga0307409_100124305 Ga0307409_1001243052 371
189 3300032005 Ga0307411_10068698 Ga0307411_100686982 371
190 3300035170 Ga0373943_0004117 Ga0373943_0004117_3480_4598 371
191 3300035692 Ga0373935_0040884 Ga0373935_0040884_689_1807 371
192 3300035695 Ga0373927_0068411 Ga0373927_0068411_547_1665 371
193 3300035725 Ga0373947_0003121 Ga0373947_0003121_2484_3602 371
194 3300035725 Ga0373947_0078525 Ga0373947_0078525_273_1391 371
195 3300037068 Ga0373925_0015134 Ga0373925_0015134_1553_2671 371
196 3300048929 Ga0496126_0001481 Ga0496126_0001481_14807_15973 371
197 3300049571 Ga0501034_0000312 Ga0501034_0000312_67826_68998 371
198 3300049584 Ga0501068_0000438 Ga0501068_0000438_13324_14496 371
199 3300049586 Ga0501070_0118966 Ga0501070_0118966_14_1186 371
200 3300049589 Ga0501073_0002209 Ga0501073_0002209_10058_11230 371
201 3300049742 Ga0501080_0065052 Ga0501080_0065052_92_1231 371
202 iso_pu_bacteria 2501025502 2501081346 371
203 iso_pu_bacteria 2510917013 2511094195 371
204 iso_pu_bacteria 2643221541 2643731103 371
205 iso_pu_bacteria 2643221606 2644044245 371
206 iso_pu_bacteria 2643221671 2644391831 371
207 3300005937 Ga0081455_10025797 Ga0081455_100257972 372
208 iso_pu_bacteria 2791355137 2792839198 372
209 3300005844 Ga0068862_100087266 Ga0068862_1000872663 373
210 3300021361 Ga0213872_10000146 Ga0213872_1000014647 373
211 3300028380 Ga0268265_10245991 Ga0268265_102459911 373
212 3300037466 Ga0395898_0161207 Ga0395898_0161207_215_1342 373
213 3300038443 Ga0395901_0119005 Ga0395901_0119005_978_2105 373
214 3300039447 Ga0436361_0305518 Ga0436361_0305518_2450_3586 373
215 3300045051 Ga0451576_0001147 Ga0451576_0001147_23124_24257 373
216 3300053119 Ga0500595_001333 Ga0500595_001333_8453_9607 373
217 iso_pu_bacteria 2904615490 2904625371 373
218 3300039447 Ga0436361_0368060 Ga0436361_0368060_90_1229 374
219 3300041404 Ga0439436_0003863 Ga0439436_0003863_3002_4162 374
220 3300037068 Ga0373925_0143188 Ga0373925_0143188_486_1646 376
221 3300053153 Ga0500616_0030987 Ga0500616_0030987_1269_2444 377
222 3300031251 Ga0265327_10007957 Ga0265327_100079573 379
223 3300045051 Ga0451576_0020765 Ga0451576_0020765_2610_3788 379
224 3300013104 Ga0157370_10015548 Ga0157370_100155486 384
225 3300026142 Ga0207698_10155570 Ga0207698_101555702 384
226 3300048927 Ga0496124_0006344 Ga0496124_0006344_9204_10445 384
227 3300001989 JGI24739J22299_10015453 JGI24739J22299_100154532 387
228 3300014497 Ga0182008_10002889 Ga0182008_100028897 387
229 3300015261 Ga0182006_1000214 Ga0182006_100021426 387

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02515

CoA_transf_3

CoA-transferase family III

34

385

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2gd0-assembly1.cif.gz_A the 1,1-proton transfer reaction mechanism by alpha-methylacyl-coa racemase is catalyzed by an aspartate/histidine pair and involves a smooth, methionine-rich surface for binding the fatty acyl moiety 0.9616 11 371
2yim-assembly2.cif.gz_C the enolisation chemistry of a thioester-dependent racemase: the 1.4 a crystal structure of a complex with a planar reaction intermediate analogue 0.9615 11 371
2g04-assembly2.cif.gz_D crystal structure of fatty acid-coa racemase from mycobacterium tuberculosis h37rv 0.9551 12 360
2gd0-assembly1.cif.gz_A the 1,1-proton transfer reaction mechanism by alpha-methylacyl-coa racemase is catalyzed by an aspartate/histidine pair and involves a smooth, methionine-rich surface for binding the fatty acyl moiety 0.9536 11 371
2yim-assembly2.cif.gz_C the enolisation chemistry of a thioester-dependent racemase: the 1.4 a crystal structure of a complex with a planar reaction intermediate analogue 0.9536 11 371
ID Description Score Start End Superfamily
af_O06543_1_217_3.40.50.10540 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.9705 11 226 3.40.50.10540
af_Q9VIK0_212_295_3.30.1540.10 Alpha Beta;2-Layer Sandwich;formyl-coa transferase, domain 3;formyl-coa transferase, domain 3 0.9567 229 314 3.30.1540.10
af_Q9VIK0_1_211_3.40.50.10540 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.9535 13 226 3.40.50.10540
af_O06543_1_217_3.40.50.10540 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.953 11 226 3.40.50.10540
1x74A04 Alpha Beta;2-Layer Sandwich;formyl-coa transferase, domain 3;formyl-coa transferase, domain 3 0.9417 222 313 3.30.1540.10
ID Description Score Start End GO Terms
AF-A0A3D3T3A1-F1-model_v4 Carnitine dehydratase 0.9819 123 213 GO:0003824
GO:0016020
AF-A0A529VSP7-F1-model_v4 CoA transferase 0.9811 85 221 GO:0016740
AF-A0A0W1IF47-F1-model_v4 Carnitine dehydratase 0.9809 11 386 GO:0003824
AF-A0A7Y4TB76-F1-model_v4 CoA transferase 0.9751 12 221 GO:0016740
AF-A0A089XK39-F1-model_v4 Fatty acid-CoA racemase 0.9746 10 373 GO:0003824

Feature Viewer

pLDDT pTM Quality
89.82 0.88 High
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Predicted Structure (AlphaFold2)

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