F340690

General Info

Members Datasets Scaffolds Average Seq Length
228 168 223 365

Family's Representative Sequence

Representative Sequence 3300005367|Ga0070667_100233445|Ga0070667_1002334452
Length 414
Sequence MARIDRLLRKTVELSGSDLHFKTDTGKAYIRIHGELFEVGDEPHYTDSEFRTMLFELLRPEQVVRFIETQELDFAVEIVGVSRFRGNAYVQRGHVQAAFRVIPYEIETMEELNLPQACYDFVQRPRGLVLVTGPAGSGKSTSLAAMIDRINRTQSVHIVTIEDPVEFVHDDHKALVNQRELDVDTNSFANALKYVLRQDPDVILVGEMRDLETIHLAITAAETGHLVFGTLHTVDAVQTVDRIVDVFPIHQQQQIRMQLSVNLLGVVSQTLVRKLDGNGRVAAFEVLVANSAVRNLVRENKTYQISSLIQTGGKAKMHTLDQYLAALVSKGLISMEDARMKSKDPNEFGRLIALGKPTGGGSTGDVGPQEGSGGPQTKSAPIASAESSAAPGANPDVAPPQQGKVERYKPSWRK

Samples

Sample ID Description Type Environment
1 2795385470 Labedaea rhizosphaerae DSM 45361 Isolate Rhizosphere
2 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
3 2929297113 Heliophilum fasciatum MTM Isolate Rhizosphere
4 3300004800 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
14 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
15 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
16 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
17 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
23 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
24 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
25 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
26 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
27 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
28 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
32 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
33 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
34 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
35 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
38 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
39 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
40 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
41 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
42 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
43 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
47 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
48 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
49 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
50 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
51 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
52 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
53 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
54 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
55 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
56 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
57 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
85 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
86 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
90 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
91 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
92 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
93 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
94 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
95 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
96 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
97 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
98 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
99 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
100 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
101 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
102 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
103 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
104 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
105 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
106 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
107 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
108 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
109 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
110 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
111 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
112 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
113 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
114 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
115 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
116 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
117 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
118 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
119 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
120 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
121 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
122 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
123 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
124 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
125 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
126 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
127 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
128 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
129 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
130 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
131 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
132 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
133 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
134 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
135 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
136 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
137 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
138 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
139 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
140 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
141 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
142 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
145 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
146 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
147 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
148 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
149 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
150 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
151 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
152 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
153 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
154 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
155 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
156 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
157 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
158 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
159 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
160 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
161 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
162 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
163 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
164 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
165 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
166 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
167 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
168 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.93
Metatranscriptomes 1.32
Isolates 1.75

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.82
Nodule 0
Rhizoplane 0.44
Rhizosphere 89.91
Stem 0
Stem Tuber 0
Unclassified 4.82

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0058861_10101846 3300004800 Bacteria 1565
2 Ga0070682_100065251 3300005337 Bacteria 2313
3 Ga0070660_100241458 3300005339 Bacteria 1472
4 Ga0070668_100006238 3300005347 Bacteria 8830
5 Ga0070673_100040033 3300005364 Bacteria 3593
6 Ga0070667_100229410 3300005367 Bacteria 1655
7 Ga0070667_100233445 3300005367 Bacteria 1641
8 Ga0070709_10044558 3300005434 Bacteria 2748
9 Ga0070714_100027991 3300005435 Bacteria 4672
10 Ga0070714_100149723 3300005435 Bacteria 2102
11 Ga0070714_100564067 3300005435 Bacteria 1091
12 Ga0070713_100040966 3300005436 Bacteria 3770
13 Ga0070701_10034510 3300005438 Bacteria 2534
14 Ga0070711_100096727 3300005439 Bacteria 2140
15 Ga0070700_100192937 3300005441 Bacteria 1425
16 Ga0070708_100004322 3300005445 Bacteria 11162
17 Ga0070708_100139371 3300005445 Bacteria 2248
18 Ga0070663_100002579 3300005455 Bacteria 10227
19 Ga0070678_100087355 3300005456 Bacteria 2381
20 Ga0070706_100197912 3300005467 Bacteria 1877
21 Ga0070707_100052365 3300005468 Bacteria 3914
22 Ga0070707_100055608 3300005468 Bacteria 3794
23 Ga0070698_100000600 3300005471 Bacteria 38715
24 Ga0070698_100001138 3300005471 Bacteria 29427
25 Ga0070699_100001302 3300005518 Bacteria 23032
26 Ga0070679_100109862 3300005530 Bacteria 2743
27 Ga0070679_100158641 3300005530 Bacteria 2236
28 Ga0070697_100028527 3300005536 Bacteria 4469
29 Ga0070697_100087498 3300005536 Bacteria 2572
30 Ga0070697_100138274 3300005536 Bacteria 2047
31 Ga0070672_100022846 3300005543 Bacteria 4600
32 Ga0070696_100297613 3300005546 Bacteria 1235
33 Ga0070665_100035198 3300005548 Bacteria 5035
34 Ga0068855_100033314 3300005563 Bacteria 6150
35 Ga0068852_100261784 3300005616 Bacteria 1661
36 Ga0068863_100000414 3300005841 Bacteria 43506
37 Ga0068858_100000007 3300005842 Bacteria 247001
38 Ga0068858_100034884 3300005842 Bacteria 4666
39 Ga0068860_100000017 3300005843 Bacteria 307083
40 Ga0068862_100169836 3300005844 Bacteria 1952
41 Ga0081455_10000947 3300005937 Bacteria 37110
42 Ga0070717_10062663 3300006028 Bacteria 3084
43 Ga0075428_100000044 3300006844 Bacteria 99935
44 Ga0075431_100033101 3300006847 Bacteria 5327
45 Ga0075431_100064895 3300006847 Bacteria 3770
46 Ga0075431_100178756 3300006847 Bacteria 2178
47 Ga0075434_100267619 3300006871 Bacteria 1728
48 Ga0075429_100035189 3300006880 Bacteria 4355
49 Ga0068865_100014869 3300006881 Bacteria 4952
50 Ga0075436_100019094 3300006914 Bacteria 4696
51 Ga0075436_100055667 3300006914 Bacteria 2731
52 Ga0075435_100063922 3300007076 Bacteria 2990
53 Ga0099794_10075083 3300007265 Bacteria 1661
54 Ga0105240_10024399 3300009093 Bacteria 7969
55 Ga0111539_10037683 3300009094 Bacteria 5837
56 Ga0111539_10131593 3300009094 Bacteria 2929
57 Ga0111539_10328059 3300009094 Bacteria 1781
58 Ga0105248_10000991 3300009177 Bacteria 31449
59 Ga0105237_10000092 3300009545 Bacteria 122239
60 Ga0105237_10073263 3300009545 Bacteria 3417
61 Ga0105239_10003937 3300010375 Bacteria 17989
62 Ga0105239_10047002 3300010375 Bacteria 4729
63 Ga0105246_10290284 3300011119 Bacteria 1316
64 Ga0157374_10163322 3300013296 Bacteria 2170
65 Ga0157374_10308194 3300013296 Bacteria 1567
66 Ga0157372_10000004 3300013307 Bacteria 435659
67 Ga0157380_10185225 3300014326 Bacteria 1833
68 Ga0157379_10000002 3300014968 Bacteria 179727
69 Ga0157379_10000363 3300014968 Bacteria 36411
70 Ga0157379_10065006 3300014968 Bacteria 3260
71 Ga0157379_10077330 3300014968 Bacteria 2980
72 Ga0157376_10090808 3300014969 Bacteria 2644
73 Ga0206354_10431928 3300020081 Bacteria 1817
74 Ga0206353_11014137 3300020082 Bacteria 1537
75 Ga0207682_10035509 3300025893 Bacteria 2014
76 Ga0207680_10000276 3300025903 Bacteria 24642
77 Ga0207680_10002717 3300025903 Bacteria 8266
78 Ga0207685_10025880 3300025905 Bacteria 2032
79 Ga0207705_10002281 3300025909 Bacteria 14838
80 Ga0207705_10006501 3300025909 Bacteria 8660
81 Ga0207705_10167981 3300025909 Bacteria 1651
82 Ga0207684_10014983 3300025910 Bacteria 6674
83 Ga0207684_10104696 3300025910 Bacteria 2420
84 Ga0207695_10062736 3300025913 Bacteria 3835
85 Ga0207671_10000004 3300025914 Bacteria 1022356
86 Ga0207671_10055915 3300025914 Bacteria 2923
87 Ga0207657_10113377 3300025919 Bacteria 2237
88 Ga0207652_10013798 3300025921 Bacteria 6535
89 Ga0207652_10155799 3300025921 Bacteria 2046
90 Ga0207646_10013644 3300025922 Bacteria 7760
91 Ga0207646_10015783 3300025922 Bacteria 7113
92 Ga0207646_10074197 3300025922 Bacteria 3039
93 Ga0207646_10290413 3300025922 Bacteria 1477
94 Ga0207681_10034198 3300025923 Bacteria 3340
95 Ga0207664_10041555 3300025929 Bacteria 3582
96 Ga0207709_10017487 3300025935 Bacteria 4001
97 Ga0207691_10037568 3300025940 Bacteria 4485
98 Ga0207711_10000775 3300025941 Bacteria 31424
99 Ga0207689_10020765 3300025942 Bacteria 5523
100 Ga0207667_10102983 3300025949 Bacteria 2945
101 Ga0207667_10369166 3300025949 Bacteria 1463
102 Ga0207668_10160611 3300025972 Bacteria 1751
103 Ga0207658_10138784 3300025986 Bacteria 1964
104 Ga0207703_10000001 3300026035 Bacteria 822925
105 Ga0207703_10025245 3300026035 Bacteria 4674
106 Ga0207639_10146839 3300026041 Bacteria 1971
107 Ga0207678_10000459 3300026067 Bacteria 36973
108 Ga0207678_10096151 3300026067 Bacteria 2531
109 Ga0207708_10034702 3300026075 Bacteria 3837
110 Ga0207702_10112181 3300026078 Bacteria 2426
111 Ga0207641_10001039 3300026088 Bacteria 28147
112 Ga0207676_10269560 3300026095 Bacteria 1541
113 Ga0207675_100251944 3300026118 Bacteria 1709
114 Ga0209974_10006243 3300027876 Bacteria 4168
115 Ga0207428_10058013 3300027907 Bacteria 3073
116 Ga0268266_10003532 3300028379 Bacteria 15522
117 Ga0268266_10076049 3300028379 Bacteria 2917
118 Ga0268265_10045061 3300028380 Bacteria 3289
119 Ga0268264_10000033 3300028381 Bacteria 404123
120 Ga0307517_10020762 3300028786 Bacteria 8347
121 Ga0307515_10072682 3300028794 Bacteria 4635
122 Ga0265338_10000115 3300028800 Bacteria 147317
123 Ga0265338_10069224 3300028800 Bacteria 3033
124 Ga0265338_10140204 3300028800 Bacteria 1895
125 Ga0307511_10000444 3300030521 Bacteria 44383
126 Ga0265330_10011656 3300031235 Bacteria 4120
127 Ga0265332_10000071 3300031238 Bacteria 86362
128 Ga0265332_10013427 3300031238 Bacteria 3629
129 Ga0265328_10041442 3300031239 Bacteria 1695
130 Ga0265320_10039066 3300031240 Bacteria 2375
131 Ga0265329_10007194 3300031242 Bacteria 4327
132 Ga0265339_10000529 3300031249 Bacteria 29857
133 Ga0265331_10000051 3300031250 Bacteria 181262
134 Ga0265327_10040102 3300031251 Bacteria 2536
135 Ga0265327_10064985 3300031251 Bacteria 1847
136 Ga0265316_10000030 3300031344 Bacteria 162620
137 Ga0307513_10024556 3300031456 Bacteria 7012
138 Ga0307509_10000086 3300031507 Bacteria 128783
139 Ga0307509_10319463 3300031507 Bacteria 1290
140 Ga0307408_100025712 3300031548 Unclassified 4034
141 Ga0265314_10000942 3300031711 Bacteria 34243
142 Ga0265314_10004952 3300031711 Bacteria 12152
143 Ga0265314_10020211 3300031711 Bacteria 5143
144 Ga0265342_10027739 3300031712 Bacteria 3533
145 Ga0265342_10124131 3300031712 Bacteria 1451
146 Ga0316576_10097045 3300031727 Bacteria 2200
147 Ga0307410_10099363 3300031852 Bacteria 2083
148 Ga0307406_10000088 3300031901 Bacteria 52833
149 Ga0307406_10006840 3300031901 Bacteria 6311
150 Ga0307406_10006975 3300031901 Bacteria 6255
151 Ga0307409_100012314 3300031995 Bacteria 5445
152 Ga0307409_100089797 3300031995 Bacteria 2513
153 Ga0307416_100146314 3300032002 Unclassified 2158
154 Ga0307415_100023893 3300032126 Bacteria 3805
155 Ga0307415_100110741 3300032126 Bacteria 2036
156 Ga0307415_100115501 3300032126 Bacteria 2001
157 Ga0307507_10008632 3300033179 Bacteria 13981
158 Ga0307510_10035045 3300033180 Bacteria 5609
159 Ga0373936_0000005 3300035113 Bacteria 325848
160 Ga0373946_0058509 3300035171 Bacteria 1633
161 Ga0373955_0110735 3300035172 Unclassified 1587
162 Ga0373935_0082914 3300035692 Bacteria 2086
163 Ga0373927_0003842 3300035695 Bacteria 10671
164 Ga0373947_0005984 3300035725 Bacteria 7091
165 Ga0373947_0006327 3300035725 Bacteria 6880
166 Ga0373937_0025762 3300036401 Bacteria 5311
167 Ga0373925_0002847 3300037068 Bacteria 13657
168 Ga0373925_0006234 3300037068 Bacteria 8797
169 Ga0395899_0217235 3300037312 Bacteria 1326
170 Ga0395900_0346132 3300037418 Bacteria 1461
171 Ga0436364_1393745 3300037853 Bacteria 1528
172 Ga0395901_0023451 3300038443 Bacteria 6327
173 Ga0395901_0266814 3300038443 Bacteria 1781
174 Ga0451577_0155486 3300042876 Bacteria 2058
175 Ga0451577_0184108 3300042876 Unclassified 1883
176 Ga0466969_0000321 3300044656 Bacteria 26470
177 Ga0466972_0013138 3300044658 Bacteria 4160
178 Ga0453683_0029211 3300044673 Bacteria 3488
179 Ga0466966_0000470 3300044684 Bacteria 25884
180 Ga0466961_0007079 3300044693 Bacteria 7134
181 Ga0453684_0007341 3300044712 Bacteria 20355
182 Ga0453684_0009780 3300044712 Bacteria 16641
183 Ga0466959_0003790 3300045049 Bacteria 10025
184 Ga0451576_0002029 3300045051 Bacteria 31966
185 Ga0451576_0164232 3300045051 Unclassified 2317
186 Ga0466958_0101333 3300045836 Bacteria 1791
187 Ga0495580_0003566 3300046472 Bacteria 13223
188 Ga0495625_0061475 3300046660 Bacteria 2658
189 Ga0495672_0189631 3300047320 Bacteria 1035
190 Ga0496102_0000238 3300048905 Bacteria 72121
191 Ga0496126_0000027 3300048929 Bacteria 396518
192 Ga0501034_0138092 3300049571 Bacteria 2418
193 Ga0501047_0160879 3300049581 Bacteria 2117
194 Ga0501068_0060584 3300049584 Bacteria 2298
195 Ga0501070_0024805 3300049586 Bacteria 5029
196 Ga0501070_0105416 3300049586 Bacteria 2330
197 Ga0501071_0126963 3300049587 Bacteria 1893
198 Ga0501072_0116724 3300049588 Bacteria 2126
199 Ga0501073_0037674 3300049589 Bacteria 3432
200 Ga0501073_0173880 3300049589 Bacteria 1491
201 Ga0501081_0021001 3300049743 Bacteria 4358
202 nmdc:mga03683_31452_c1 3300050489 Bacteria 2129
203 nmdc:mga03n38_43557_c1 3300050490 Bacteria 1967
204 nmdc:mga09592_55552_c1 3300050508 Bacteria 3346
205 nmdc:mga09592_81816_c1 3300050508 Bacteria 2752
206 nmdc:mga09592_89834_c1 3300050508 Bacteria 2624
207 nmdc:mga0qj67_359808_c1 3300050509 Bacteria 1176
208 nmdc:mga06r32_233_c3 3300050510 Bacteria 6448
209 nmdc:mga06r32_28574_c1 3300050510 Bacteria 5221
210 nmdc:mga08y16_5911_c1 3300050511 Bacteria 12829
211 nmdc:mga0n895_67140_c1 3300050512 Bacteria 3551
212 nmdc:mga08x19_143337_c1 3300050514 Bacteria 1615
213 nmdc:mga08x19_15077_c1 3300050514 Bacteria 4696
214 Ga0500635_0033071 3300053080 Bacteria 1685
215 Ga0495619_0013355 3300053085 Bacteria 5175
216 Ga0500647_0036347 3300053091 Bacteria 2355
217 Ga0500640_004660 3300053095 Bacteria 5008
218 Ga0500554_001740 3300053102 Bacteria 4193
219 Ga0500572_004356 3300053111 Bacteria 3216
220 Ga0500595_001808 3300053119 Bacteria 11092
221 Ga0500597_010497 3300053120 Bacteria 3310
222 Ga0500608_000926 3300053122 Bacteria 10538
223 Ga0500637_0062306 3300053178 Bacteria 2137

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049584 Ga0501068_0060584 Ga0501068_0060584_50_967 304
2 3300053178 Ga0500637_0062306 Ga0500637_0062306_1152_2126 305
3 3300014968 Ga0157379_10065006 Ga0157379_100650062 307
4 3300050509 nmdc:mga0qj67_359808_c1 nmdc:mga0qj67_359808_c1_219_1166 315
5 3300050514 nmdc:mga08x19_143337_c1 nmdc:mga08x19_143337_c1_35_1012 320
6 3300005536 Ga0070697_100087498 Ga0070697_1000874982 327
7 3300047320 Ga0495672_0189631 Ga0495672_0189631_16_1020 334
8 3300035172 Ga0373955_0110735 Ga0373955_0110735_285_1310 341
9 3300036401 Ga0373937_0025762 Ga0373937_0025762_3165_4190 341
10 3300042876 Ga0451577_0184108 Ga0451577_0184108_137_1240 341
11 3300045051 Ga0451576_0164232 Ga0451576_0164232_77_1180 341
12 iso_pu_bacteria 2929297113 2929297819 343
13 3300009094 Ga0111539_10037683 Ga0111539_100376832 344
14 3300050511 nmdc:mga08y16_5911_c1 nmdc:mga08y16_5911_c1_10846_11946 344
15 3300013296 Ga0157374_10308194 Ga0157374_103081942 345
16 3300025922 Ga0207646_10015783 Ga0207646_100157836 345
17 3300027907 Ga0207428_10058013 Ga0207428_100580132 345
18 3300014968 Ga0157379_10000363 Ga0157379_1000036319 346
19 3300014969 Ga0157376_10090808 Ga0157376_100908082 346
20 3300028800 Ga0265338_10000115 Ga0265338_1000011579 346
21 3300035725 Ga0373947_0005984 Ga0373947_0005984_4709_5782 346
22 3300037068 Ga0373925_0002847 Ga0373925_0002847_8120_9193 346
23 3300046472 Ga0495580_0003566 Ga0495580_0003566_8144_9217 346
24 3300049589 Ga0501073_0037674 Ga0501073_0037674_301_1377 346
25 3300005445 Ga0070708_100004322 Ga0070708_1000043228 347
26 3300005468 Ga0070707_100055608 Ga0070707_1000556081 347
27 3300005518 Ga0070699_100001302 Ga0070699_10000130212 347
28 3300006914 Ga0075436_100019094 Ga0075436_1000190943 347
29 3300025910 Ga0207684_10014983 Ga0207684_100149835 347
30 3300030521 Ga0307511_10000444 Ga0307511_1000044422 347
31 3300050514 nmdc:mga08x19_15077_c1 nmdc:mga08x19_15077_c1_1894_2940 347
32 3300005468 Ga0070707_100052365 Ga0070707_1000523655 348
33 3300005471 Ga0070698_100000600 Ga0070698_10000060016 348
34 3300005536 Ga0070697_100028527 Ga0070697_1000285272 348
35 3300005563 Ga0068855_100033314 Ga0068855_1000333145 348
36 3300007265 Ga0099794_10075083 Ga0099794_100750831 348
37 3300010375 Ga0105239_10047002 Ga0105239_100470022 348
38 3300013296 Ga0157374_10163322 Ga0157374_101633222 348
39 3300025909 Ga0207705_10002281 Ga0207705_100022814 348
40 3300025922 Ga0207646_10074197 Ga0207646_100741977 348
41 3300025922 Ga0207646_10290413 Ga0207646_102904132 348
42 3300050489 nmdc:mga03683_31452_c1 nmdc:mga03683_31452_c1_313_1362 348
43 3300050490 nmdc:mga03n38_43557_c1 nmdc:mga03n38_43557_c1_870_1919 348
44 3300005434 Ga0070709_10044558 Ga0070709_100445583 349
45 3300005435 Ga0070714_100149723 Ga0070714_1001497233 349
46 3300005435 Ga0070714_100564067 Ga0070714_1005640671 349
47 3300009094 Ga0111539_10131593 Ga0111539_101315931 349
48 3300027876 Ga0209974_10006243 Ga0209974_100062433 349
49 3300028800 Ga0265338_10140204 Ga0265338_101402042 349
50 3300031727 Ga0316576_10097045 Ga0316576_100970452 349
51 3300042876 Ga0451577_0155486 Ga0451577_0155486_75_1127 349
52 3300044673 Ga0453683_0029211 Ga0453683_0029211_1218_2270 349
53 3300044712 Ga0453684_0007341 Ga0453684_0007341_6883_7965 349
54 3300045051 Ga0451576_0002029 Ga0451576_0002029_13363_14415 349
55 3300025910 Ga0207684_10104696 Ga0207684_101046962 350
56 3300025922 Ga0207646_10013644 Ga0207646_100136449 350
57 3300031901 Ga0307406_10006840 Ga0307406_100068402 350
58 3300032126 Ga0307415_100110741 Ga0307415_1001107412 350
59 3300044712 Ga0453684_0007341 Ga0453684_0007341_5810_6877 350
60 3300050508 nmdc:mga09592_55552_c1 nmdc:mga09592_55552_c1_975_2099 350
61 3300005438 Ga0070701_10034510 Ga0070701_100345102 351
62 3300006028 Ga0070717_10062663 Ga0070717_100626632 351
63 3300011119 Ga0105246_10290284 Ga0105246_102902842 351
64 3300025935 Ga0207709_10017487 Ga0207709_100174872 351
65 3300025942 Ga0207689_10020765 Ga0207689_100207652 351
66 3300026075 Ga0207708_10034702 Ga0207708_100347022 351
67 3300026095 Ga0207676_10269560 Ga0207676_102695602 351
68 3300028786 Ga0307517_10020762 Ga0307517_100207624 351
69 3300028800 Ga0265338_10069224 Ga0265338_100692242 351
70 3300031456 Ga0307513_10024556 Ga0307513_100245562 351
71 3300031507 Ga0307509_10000086 Ga0307509_1000008652 351
72 3300031548 Ga0307408_100025712 Ga0307408_1000257123 351
73 3300031852 Ga0307410_10099363 Ga0307410_100993632 351
74 3300031901 Ga0307406_10000088 Ga0307406_1000008844 351
75 3300031995 Ga0307409_100012314 Ga0307409_1000123146 351
76 3300032002 Ga0307416_100146314 Ga0307416_1001463143 351
77 3300035113 Ga0373936_0000005 Ga0373936_0000005_57559_58671 351
78 3300050508 nmdc:mga09592_81816_c1 nmdc:mga09592_81816_c1_851_1963 351
79 3300053080 Ga0500635_0033071 Ga0500635_0033071_331_1443 351
80 3300053091 Ga0500647_0036347 Ga0500647_0036347_695_1807 351
81 3300053095 Ga0500640_004660 Ga0500640_004660_1384_2496 351
82 3300053102 Ga0500554_001740 Ga0500554_001740_1384_2496 351
83 3300053111 Ga0500572_004356 Ga0500572_004356_468_1580 351
84 3300053119 Ga0500595_001808 Ga0500595_001808_8597_9709 351
85 3300053120 Ga0500597_010497 Ga0500597_010497_142_1254 351
86 3300005441 Ga0070700_100192937 Ga0070700_1001929372 352
87 3300005445 Ga0070708_100139371 Ga0070708_1001393711 352
88 3300009093 Ga0105240_10024399 Ga0105240_100243995 352
89 3300031507 Ga0307509_10319463 Ga0307509_103194631 352
90 3300031711 Ga0265314_10020211 Ga0265314_100202113 352
91 3300044712 Ga0453684_0009780 Ga0453684_0009780_11817_12917 352
92 3300049586 Ga0501070_0024805 Ga0501070_0024805_2397_3512 352
93 3300049586 Ga0501070_0105416 Ga0501070_0105416_588_1709 352
94 3300049587 Ga0501071_0126963 Ga0501071_0126963_697_1818 352
95 3300049588 Ga0501072_0116724 Ga0501072_0116724_744_1865 352
96 3300049743 Ga0501081_0021001 Ga0501081_0021001_1380_2501 352
97 3300005471 Ga0070698_100001138 Ga0070698_10000113816 353
98 3300005548 Ga0070665_100035198 Ga0070665_1000351982 353
99 3300025921 Ga0207652_10013798 Ga0207652_100137984 353
100 3300025949 Ga0207667_10102983 Ga0207667_101029832 353
101 3300026067 Ga0207678_10096151 Ga0207678_100961512 353
102 3300026118 Ga0207675_100251944 Ga0207675_1002519442 353
103 3300028379 Ga0268266_10003532 Ga0268266_1000353213 353
104 3300049571 Ga0501034_0138092 Ga0501034_0138092_528_1652 353
105 iso_pu_bacteria 2818991472 2819747442 353
106 3300005364 Ga0070673_100040033 Ga0070673_1000400332 354
107 3300005456 Ga0070678_100087355 Ga0070678_1000873552 354
108 3300005543 Ga0070672_100022846 Ga0070672_1000228463 354
109 3300006871 Ga0075434_100267619 Ga0075434_1002676192 354
110 3300007076 Ga0075435_100063922 Ga0075435_1000639222 354
111 3300025893 Ga0207682_10035509 Ga0207682_100355092 354
112 3300025923 Ga0207681_10034198 Ga0207681_100341982 354
113 3300025940 Ga0207691_10037568 Ga0207691_100375682 354
114 3300025972 Ga0207668_10160611 Ga0207668_101606112 354
115 3300035171 Ga0373946_0058509 Ga0373946_0058509_181_1293 354
116 3300035692 Ga0373935_0082914 Ga0373935_0082914_44_1156 354
117 3300035695 Ga0373927_0003842 Ga0373927_0003842_3652_4764 354
118 3300035725 Ga0373947_0006327 Ga0373947_0006327_3320_4432 354
119 3300037068 Ga0373925_0006234 Ga0373925_0006234_5349_6461 354
120 3300037853 Ga0436364_1393745 Ga0436364_1393745_322_1422 354
121 3300005435 Ga0070714_100027991 Ga0070714_1000279913 355
122 3300005844 Ga0068862_100169836 Ga0068862_1001698362 355
123 3300006914 Ga0075436_100055667 Ga0075436_1000556671 355
124 3300014326 Ga0157380_10185225 Ga0157380_101852251 355
125 3300025905 Ga0207685_10025880 Ga0207685_100258801 355
126 3300025929 Ga0207664_10041555 Ga0207664_100415554 355
127 3300028380 Ga0268265_10045061 Ga0268265_100450612 355
128 3300050508 nmdc:mga09592_89834_c1 nmdc:mga09592_89834_c1_722_1789 355
129 3300050512 nmdc:mga0n895_67140_c1 nmdc:mga0n895_67140_c1_1775_2857 355
130 3300005467 Ga0070706_100197912 Ga0070706_1001979121 356
131 iso_pu_bacteria 2795385470 2795785069 356
132 3300005546 Ga0070696_100297613 Ga0070696_1002976131 357
133 3300005937 Ga0081455_10000947 Ga0081455_100009475 357
134 3300028794 Ga0307515_10072682 Ga0307515_100726823 357
135 3300031235 Ga0265330_10011656 Ga0265330_100116563 357
136 3300031238 Ga0265332_10000071 Ga0265332_1000007130 357
137 3300031239 Ga0265328_10041442 Ga0265328_100414422 357
138 3300031240 Ga0265320_10039066 Ga0265320_100390661 357
139 3300031250 Ga0265331_10000051 Ga0265331_10000051144 357
140 3300031344 Ga0265316_10000030 Ga0265316_1000003014 357
141 3300031711 Ga0265314_10000942 Ga0265314_100009422 357
142 3300031712 Ga0265342_10027739 Ga0265342_100277392 357
143 3300005367 Ga0070667_100233445 Ga0070667_1002334452 358
144 3300005436 Ga0070713_100040966 Ga0070713_1000409663 358
145 3300006881 Ga0068865_100014869 Ga0068865_1000148693 358
146 3300009545 Ga0105237_10000092 Ga0105237_1000009279 358
147 3300025903 Ga0207680_10000276 Ga0207680_100002764 358
148 3300025914 Ga0207671_10000004 Ga0207671_10000004623 358
149 3300031238 Ga0265332_10013427 Ga0265332_100134272 358
150 3300031242 Ga0265329_10007194 Ga0265329_100071942 358
151 3300031249 Ga0265339_10000529 Ga0265339_1000052922 358
152 3300031711 Ga0265314_10004952 Ga0265314_100049526 358
153 3300031712 Ga0265342_10124131 Ga0265342_101241311 358
154 3300049589 Ga0501073_0173880 Ga0501073_0173880_93_1211 358
155 iso_pu_bacteria 8003314358 8003321375 358
156 3300014968 Ga0157379_10077330 Ga0157379_100773302 360
157 3300038443 Ga0395901_0266814 Ga0395901_0266814_468_1550 360
158 3300005337 Ga0070682_100065251 Ga0070682_1000652512 361
159 3300005439 Ga0070711_100096727 Ga0070711_1000967272 361
160 3300010375 Ga0105239_10003937 Ga0105239_1000393710 361
161 3300031251 Ga0265327_10064985 Ga0265327_100649852 361
162 3300053085 Ga0495619_0013355 Ga0495619_0013355_378_1613 361
163 3300053122 Ga0500608_000926 Ga0500608_000926_1857_3092 361
164 3300005347 Ga0070668_100006238 Ga0070668_1000062387 362
165 3300005455 Ga0070663_100002579 Ga0070663_10000257910 362
166 3300005842 Ga0068858_100000007 Ga0068858_100000007167 362
167 3300006844 Ga0075428_100000044 Ga0075428_10000004479 362
168 3300006847 Ga0075431_100178756 Ga0075431_1001787562 362
169 3300009177 Ga0105248_10000991 Ga0105248_1000099126 362
170 3300014968 Ga0157379_10000002 Ga0157379_10000002107 362
171 3300025941 Ga0207711_10000775 Ga0207711_100007753 362
172 3300026035 Ga0207703_10000001 Ga0207703_1000000179 362
173 3300026041 Ga0207639_10146839 Ga0207639_101468392 362
174 3300026067 Ga0207678_10000459 Ga0207678_1000045932 362
175 3300033179 Ga0307507_10008632 Ga0307507_1000863212 362
176 3300033180 Ga0307510_10035045 Ga0307510_100350456 362
177 3300037312 Ga0395899_0217235 Ga0395899_0217235_73_1164 362
178 3300037418 Ga0395900_0346132 Ga0395900_0346132_66_1157 362
179 3300038443 Ga0395901_0023451 Ga0395901_0023451_667_1755 362
180 3300044658 Ga0466972_0013138 Ga0466972_0013138_601_1689 362
181 3300048929 Ga0496126_0000027 Ga0496126_0000027_235688_236776 362
182 3300020082 Ga0206353_11014137 Ga0206353_110141372 363
183 3300026078 Ga0207702_10112181 Ga0207702_101121811 363
184 3300031901 Ga0307406_10006975 Ga0307406_100069756 363
185 3300049581 Ga0501047_0160879 Ga0501047_0160879_911_2047 363
186 3300005339 Ga0070660_100241458 Ga0070660_1002414582 364
187 3300006847 Ga0075431_100033101 Ga0075431_1000331014 364
188 3300006847 Ga0075431_100064895 Ga0075431_1000648951 364
189 3300006880 Ga0075429_100035189 Ga0075429_1000351895 364
190 3300009094 Ga0111539_10328059 Ga0111539_103280592 364
191 3300013307 Ga0157372_10000004 Ga0157372_10000004282 364
192 3300031251 Ga0265327_10040102 Ga0265327_100401021 364
193 3300031995 Ga0307409_100089797 Ga0307409_1000897972 364
194 3300032126 Ga0307415_100023893 Ga0307415_1000238932 364
195 3300032126 Ga0307415_100115501 Ga0307415_1001155012 364
196 3300044656 Ga0466969_0000321 Ga0466969_0000321_22544_23638 364
197 3300044684 Ga0466966_0000470 Ga0466966_0000470_258_1352 364
198 3300044693 Ga0466961_0007079 Ga0466961_0007079_3816_4910 364
199 3300045049 Ga0466959_0003790 Ga0466959_0003790_3818_4912 364
200 3300045836 Ga0466958_0101333 Ga0466958_0101333_641_1750 364
201 3300046660 Ga0495625_0061475 Ga0495625_0061475_453_1550 364
202 3300050510 nmdc:mga06r32_233_c3 nmdc:mga06r32_233_c3_2804_3898 364
203 3300050510 nmdc:mga06r32_28574_c1 nmdc:mga06r32_28574_c1_2512_3606 364
204 3300004800 Ga0058861_10101846 Ga0058861_101018462 365
205 3300005367 Ga0070667_100229410 Ga0070667_1002294102 365
206 3300005530 Ga0070679_100109862 Ga0070679_1001098622 365
207 3300005530 Ga0070679_100158641 Ga0070679_1001586412 365
208 3300005536 Ga0070697_100138274 Ga0070697_1001382742 365
209 3300005616 Ga0068852_100261784 Ga0068852_1002617842 365
210 3300005841 Ga0068863_100000414 Ga0068863_10000041418 365
211 3300005842 Ga0068858_100034884 Ga0068858_1000348842 365
212 3300005843 Ga0068860_100000017 Ga0068860_100000017157 365
213 3300009545 Ga0105237_10073263 Ga0105237_100732634 365
214 3300020081 Ga0206354_10431928 Ga0206354_104319282 365
215 3300025903 Ga0207680_10002717 Ga0207680_100027171 365
216 3300025909 Ga0207705_10006501 Ga0207705_100065018 365
217 3300025909 Ga0207705_10167981 Ga0207705_101679812 365
218 3300025913 Ga0207695_10062736 Ga0207695_100627364 365
219 3300025914 Ga0207671_10055915 Ga0207671_100559151 365
220 3300025919 Ga0207657_10113377 Ga0207657_101133772 365
221 3300025921 Ga0207652_10155799 Ga0207652_101557992 365
222 3300025949 Ga0207667_10369166 Ga0207667_103691662 365
223 3300025986 Ga0207658_10138784 Ga0207658_101387842 365
224 3300026035 Ga0207703_10025245 Ga0207703_100252456 365
225 3300026088 Ga0207641_10001039 Ga0207641_100010396 365
226 3300028379 Ga0268266_10076049 Ga0268266_100760492 365
227 3300028381 Ga0268264_10000033 Ga0268264_10000033245 365
228 3300048905 Ga0496102_0000238 Ga0496102_0000238_41121_42227 365

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00437

T2SSE

Type II/IV secretion system protein

7

275

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
3jvu-assembly1.cif.gz_C-2 crystal structure of unliganded p. aeruginosa pilt 0.967 9 350
3jvv-assembly1.cif.gz_C-2 crystal structure of p. aeruginosa pilt with bound amp-pcp 0.9667 9 350
3jvu-assembly1.cif.gz_C-2 crystal structure of unliganded p. aeruginosa pilt 0.9614 9 350
3jvv-assembly1.cif.gz_C-2 crystal structure of p. aeruginosa pilt with bound amp-pcp 0.9611 9 350
3jvv-assembly1.cif.gz_B-2 crystal structure of p. aeruginosa pilt with bound amp-pcp 0.956 9 350
ID Description Score Start End Superfamily
3jvvC02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9727 111 350 3.40.50.300
3jvvC02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9606 111 350 3.40.50.300
3jvvA01 Alpha Beta;2-Layer Sandwich;Beta-Lactamase; 0.951 9 109 3.30.450.90
5fl3A01 Alpha Beta;2-Layer Sandwich;Beta-Lactamase; 0.9496 9 108 3.30.450.90
3jvvA01 Alpha Beta;2-Layer Sandwich;Beta-Lactamase; 0.9419 9 109 3.30.450.90
ID Description Score Start End GO Terms
AF-A0A350M0U8-F1-model_v4 Type IV pili twitching motility protein PilT 0.991 168 353 GO:0005524
GO:0016887
AF-A0A2N2SK01-F1-model_v4 Twitching motility protein PilT 0.9884 126 354 GO:0005524
GO:0016887
AF-A0A3D1I9X2-F1-model_v4 Type IV pili twitching motility protein PilT 0.9879 160 327 GO:0016887
AF-A0A2A4VK81-F1-model_v4 Twitching motility protein PilT 0.9876 206 354 GO:0016887
AF-A0A383EYP2-F1-model_v4 Bacterial type II secretion system protein E domain-containing protein 0.9869 108 323 GO:0005524
GO:0016887

Feature Viewer

pLDDT pTM Quality
91.77 0.87 High
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Predicted Structure (AlphaFold2)

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