F333510

General Info

Members Datasets Scaffolds Average Seq Length
221 165 184 338

Family's Representative Sequence

Representative Sequence 3300031616|Ga0307508_10060304|Ga0307508_100603042
Length 377
Sequence MRPGPLIALNSFTKALYLNGNYAPGLGGVSREEGRFVARVTIDDIAREAGVSRGAVSFALNGRPGVSEATRERILRVAEQMNWRPHSAARALGGARADAVGLVVARPARTIGIEPFFGQLLAGLQDGLSAKSVSLSLMIVEDTAAEIGVYRRWVSEHRVDGFVVVDPQVKDPRFAVLEELGTPAVVLGGPGRHGRLGSVWADDREAMLSLVEYLAAIGHRRIAHLAGMPSFQHTQRRMRALRDCAKRLGLIGAVSIPTDFSDAQGAAATRTLLSSGPGNQPTAIIYDSDVMAVAGLAVATEMGVSVPERLSIVSFEDSVLTRIVHPPITALTRDAFSLGRQAAHSVLAAVENPAGVRDLKTATPALTVRGSTAAPGA

Samples

Sample ID Description Type Environment
1 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
2 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
3 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
4 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
5 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
6 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
7 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
8 2643221546 Microbacterium sp. Root53 Isolate Unclassified
9 2643221553 Microbacterium sp. Root553 Isolate Unclassified
10 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
11 2643221630 Microbacterium sp. Root322 Isolate Unclassified
12 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
13 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
14 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
15 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
16 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
17 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
18 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
19 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
20 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
21 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
22 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
23 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
24 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
25 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
26 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
27 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
28 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
29 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
30 2919395869 Microbacterium resistens 2980 Isolate Unclassified
31 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
32 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
33 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
34 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
35 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
36 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
37 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
38 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
39 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
40 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
41 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
42 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
43 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
44 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
45 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
48 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
49 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
50 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
51 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
52 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
53 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
54 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
55 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
56 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
57 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
71 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
72 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
73 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
74 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
75 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
76 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
77 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
78 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
79 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
80 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
81 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
82 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
83 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
84 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
85 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
86 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
87 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
88 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
89 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
90 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
91 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
92 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
93 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
94 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
95 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
96 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
97 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
98 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
99 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
100 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
101 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
102 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
103 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
104 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
105 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
106 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
107 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
108 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
109 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
110 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
111 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
112 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
113 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
114 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
115 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
116 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
117 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
118 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
119 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
120 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
121 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
122 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
123 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
124 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
125 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
126 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
127 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
128 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
129 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
130 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
131 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
132 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
133 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
134 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
135 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
136 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
137 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
138 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
139 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
140 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
141 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
142 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
143 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
144 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
145 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
146 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
147 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
148 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
149 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
150 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
151 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
152 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
153 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
154 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
155 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
156 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
157 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
158 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
159 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
160 3300053124 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 endosphere Metagenome Endosphere
161 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
162 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
163 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
164 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere
165 8056060235 Nocardiopsis endophytica RSe5-2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 83.26
Metatranscriptomes 0
Isolates 16.74

Biome Distribution

Category Percentage (%)
Aerial Root 0.45
Bulb 0
Endosphere 0.9
Nodule 0
Rhizoplane 10.86
Rhizosphere 65.16
Stem 0
Stem Tuber 0
Unclassified 22.62

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10003303 3300001989 Bacteria 6147
2 JGI25154J39366_1001625 3300002738 Bacteria 7581
3 JGI25406J46586_10004492 3300003203 Bacteria 6492
4 Ga0070709_10174393 3300005434 Bacteria 1505
5 Ga0070713_100420790 3300005436 Bacteria 1251
6 Ga0070665_100018811 3300005548 Bacteria 6925
7 Ga0068855_100016099 3300005563 Bacteria 8991
8 Ga0068855_100033368 3300005563 Bacteria 6144
9 Ga0068856_100168944 3300005614 Bacteria 2199
10 Ga0068862_100298960 3300005844 Bacteria 1480
11 Ga0081539_10000927 3300005985 Bacteria 55152
12 Ga0075431_100053590 3300006847 Bacteria 4158
13 Ga0075434_100535378 3300006871 Bacteria 1191
14 Ga0105240_10014959 3300009093 Bacteria 10572
15 Ga0105240_10019628 3300009093 Bacteria 9028
16 Ga0105245_10246040 3300009098 Bacteria 1736
17 Ga0105245_10397240 3300009098 Bacteria 1377
18 Ga0105241_10004215 3300009174 Bacteria 10621
19 Ga0105241_10172308 3300009174 Bacteria 1788
20 Ga0105237_10008533 3300009545 Bacteria 11074
21 Ga0105237_10266656 3300009545 Bacteria 1715
22 Ga0105238_10004800 3300009551 Bacteria 13376
23 Ga0105238_10031997 3300009551 Bacteria 5353
24 Ga0105239_10005963 3300010375 Bacteria 14179
25 Ga0105239_10017457 3300010375 Bacteria 7936
26 Ga0157369_10102819 3300013105 Bacteria 3043
27 Ga0157372_10032640 3300013307 Bacteria 5710
28 Ga0157372_10372793 3300013307 Bacteria 1663
29 Ga0157375_10493351 3300013308 Bacteria 1389
30 Ga0163163_10157390 3300014325 Bacteria 2316
31 Ga0157376_10084681 3300014969 Bacteria 2730
32 Ga0209646_1000014 3300025246 Bacteria 550484
33 Ga0207647_10002415 3300025904 Bacteria 14163
34 Ga0207647_10007208 3300025904 Bacteria 8053
35 Ga0207654_10073582 3300025911 Bacteria 2037
36 Ga0207695_10001103 3300025913 Bacteria 46908
37 Ga0207695_10008750 3300025913 Bacteria 12622
38 Ga0207671_10000389 3300025914 Bacteria 61710
39 Ga0207671_10000467 3300025914 Bacteria 55193
40 Ga0207694_10000549 3300025924 Bacteria 34007
41 Ga0207694_10001430 3300025924 Bacteria 20474
42 Ga0207679_10135780 3300025945 Bacteria 1980
43 Ga0207667_10398617 3300025949 Bacteria 1401
44 Ga0207640_10043364 3300025981 Bacteria 2874
45 Ga0207658_10043001 3300025986 Bacteria 3282
46 Ga0207678_10092400 3300026067 Bacteria 2586
47 Ga0207678_10096631 3300026067 Bacteria 2524
48 Ga0207702_10031709 3300026078 Bacteria 4406
49 Ga0207702_10369626 3300026078 Bacteria 1376
50 Ga0207698_10176235 3300026142 Bacteria 1888
51 Ga0268266_10102633 3300028379 Bacteria 2523
52 Ga0307517_10198427 3300028786 Bacteria 1259
53 Ga0307515_10023624 3300028794 Bacteria 10764
54 Ga0307515_10056710 3300028794 Bacteria 5686
55 Ga0307515_10091759 3300028794 Bacteria 3790
56 Ga0307515_10149011 3300028794 Bacteria 2458
57 Ga0307512_10016484 3300030522 Bacteria 6820
58 Ga0307512_10021847 3300030522 Bacteria 5762
59 Ga0307513_10000007 3300031456 Bacteria 451043
60 Ga0307513_10006376 3300031456 Bacteria 15421
61 Ga0307509_10043951 3300031507 Bacteria 4829
62 Ga0307508_10007907 3300031616 Bacteria 9869
63 Ga0307508_10060304 3300031616 Bacteria 3355
64 Ga0307508_10094161 3300031616 Bacteria 2586
65 Ga0307508_10218986 3300031616 Bacteria 1504
66 Ga0307405_10107394 3300031731 Bacteria 1884
67 Ga0307405_10240808 3300031731 Bacteria 1340
68 Ga0307413_10032672 3300031824 Bacteria 2953
69 Ga0326468_10000172 3300031889 Bacteria 6396
70 Ga0307406_10006693 3300031901 Bacteria 6372
71 Ga0307406_10283453 3300031901 Bacteria 1265
72 Ga0307409_100000054 3300031995 Bacteria 40959
73 Ga0307416_100000817 3300032002 Bacteria 16313
74 Ga0307416_100269216 3300032002 Bacteria 1671
75 Ga0307414_10036989 3300032004 Bacteria 3264
76 Ga0307414_10136566 3300032004 Bacteria 1913
77 Ga0307415_100000174 3300032126 Bacteria 28683
78 Ga0307507_10028329 3300033179 Bacteria 5973
79 Ga0307507_10191710 3300033179 Bacteria 1435
80 Ga0395901_0664182 3300038443 Bacteria 1044
81 Ga0439436_0007154 3300041404 Bacteria 3435
82 Ga0439439_0001614 3300041406 Bacteria 4551
83 Ga0451791_0411204 3300041451 Bacteria 2037
84 Ga0451791_0604469 3300041451 Bacteria 3692
85 Ga0451793_1383052 3300041452 Bacteria 2878
86 Ga0451793_1438464 3300041452 Bacteria 1500
87 Ga0451833_0191171 3300041491 Bacteria 2101
88 Ga0451841_0080544 3300041498 Bacteria 1216
89 Ga0451843_0429477 3300041509 Bacteria 2259
90 Ga0451853_2504315 3300041512 Bacteria 3083
91 Ga0466966_0176228 3300044684 Bacteria 1298
92 Ga0466961_0007691 3300044693 Bacteria 6862
93 Ga0466961_0117138 3300044693 Bacteria 1674
94 Ga0466961_0270337 3300044693 Bacteria 1041
95 Ga0466971_0001883 3300044719 Bacteria 8912
96 Ga0466970_0025906 3300044765 Bacteria 3072
97 Ga0466970_0027126 3300044765 Bacteria 3004
98 Ga0466959_0000597 3300045049 Bacteria 21073
99 Ga0466959_0132228 3300045049 Bacteria 1768
100 Ga0466958_0047703 3300045836 Bacteria 2586
101 Ga0466958_0057310 3300045836 Bacteria 2368
102 Ga0495627_000971 3300046453 Bacteria 19577
103 Ga0495592_0019635 3300046454 Bacteria 5141
104 Ga0495592_0039439 3300046454 Bacteria 3547
105 Ga0495651_0001022 3300046462 Bacteria 21654
106 Ga0495651_0007188 3300046462 Bacteria 8514
107 Ga0495653_0023284 3300046463 Bacteria 5007
108 Ga0495653_0054973 3300046463 Bacteria 3039
109 Ga0495580_0053447 3300046472 Bacteria 2850
110 Ga0495662_0000513 3300046476 Bacteria 17660
111 Ga0495594_0072881 3300046499 Bacteria 1911
112 Ga0495606_0000307 3300046507 Bacteria 84368
113 Ga0495608_0004653 3300046511 Bacteria 9809
114 Ga0495618_0017932 3300046514 Bacteria 4344
115 Ga0495628_0004793 3300046516 Bacteria 11913
116 Ga0495628_0336194 3300046516 Bacteria 1112
117 Ga0495630_0047084 3300046517 Bacteria 3224
118 Ga0495666_0002029 3300046526 Bacteria 10014
119 Ga0495652_0002022 3300046529 Bacteria 21559
120 Ga0495652_0020682 3300046529 Bacteria 5850
121 Ga0495665_0000872 3300046531 Bacteria 15774
122 Ga0495640_0028403 3300046533 Bacteria 4028
123 Ga0495586_0005458 3300046535 Bacteria 6801
124 Ga0495586_0029057 3300046535 Bacteria 2960
125 Ga0495645_0015013 3300046543 Bacteria 5503
126 Ga0495667_0011806 3300046559 Bacteria 5917
127 Ga0495668_0000563 3300046616 Bacteria 45601
128 Ga0495625_0000763 3300046660 Bacteria 44832
129 Ga0495635_0003230 3300046663 Bacteria 11235
130 Ga0495635_0012453 3300046663 Bacteria 5958
131 Ga0495657_0006971 3300046675 Bacteria 8769
132 Ga0495599_0019298 3300046678 Bacteria 4249
133 Ga0495623_0020824 3300046679 Bacteria 4238
134 Ga0495646_0020667 3300046680 Bacteria 4165
135 Ga0495646_0085572 3300046680 Bacteria 1829
136 Ga0495647_0111366 3300046681 Bacteria 1143
137 Ga0495613_0032455 3300046689 Bacteria 3879
138 Ga0495581_0003573 3300047315 Bacteria 8934
139 Ga0495581_0046427 3300047315 Bacteria 2510
140 Ga0495604_0001909 3300047317 Bacteria 16886
141 Ga0495674_0078830 3300047319 Bacteria 2829
142 Ga0495684_0017617 3300047471 Bacteria 5500
143 Ga0495593_0006989 3300047673 Bacteria 6614
144 Ga0495626_0000029 3300048091 Bacteria 202868
145 Ga0496100_0209481 3300048903 Bacteria 1425
146 Ga0496101_0036558 3300048904 Bacteria 3479
147 Ga0496101_0129410 3300048904 Bacteria 1916
148 Ga0496102_0029748 3300048905 Bacteria 4888
149 Ga0496102_0064486 3300048905 Bacteria 3355
150 Ga0496102_0461842 3300048905 Bacteria 1191
151 Ga0496102_0473226 3300048905 Bacteria 1174
152 Ga0496103_0165298 3300048906 Bacteria 1420
153 Ga0496104_0006638 3300048907 Bacteria 10184
154 Ga0496105_0227675 3300048908 Bacteria 1516
155 Ga0496108_0000083 3300048911 Bacteria 101924
156 Ga0496108_0011098 3300048911 Bacteria 7318
157 Ga0496108_0021481 3300048911 Bacteria 5305
158 Ga0496109_0041364 3300048912 Bacteria 4174
159 Ga0496109_0052237 3300048912 Bacteria 3724
160 Ga0496109_0144103 3300048912 Bacteria 2228
161 Ga0496110_0195805 3300048913 Bacteria 1835
162 Ga0496114_0153924 3300048917 Bacteria 1995
163 Ga0496114_0376212 3300048917 Bacteria 1257
164 Ga0496115_0130577 3300048918 Bacteria 2070
165 Ga0496118_0056558 3300048921 Bacteria 2948
166 Ga0496124_0056767 3300048927 Bacteria 3301
167 Ga0496125_0054247 3300048928 Bacteria 3278
168 Ga0496126_0013418 3300048929 Bacteria 8336
169 Ga0501039_0085854 3300049575 Bacteria 2451
170 Ga0501040_0133007 3300049576 Bacteria 1750
171 Ga0501048_0128938 3300049582 Bacteria 1789
172 Ga0501074_0019018 3300049590 Bacteria 4989
173 Ga0501035_0076832 3300049822 Bacteria 2952
174 Ga0501044_0027711 3300049823 Bacteria 5981
175 Ga0501044_0165917 3300049823 Bacteria 2183
176 nmdc:mga09592_230841_c1 3300050508 Bacteria 1603
177 nmdc:mga06r32_44506_c1 3300050510 Bacteria 4227
178 Ga0495601_0005984 3300053077 Bacteria 7097
179 Ga0495601_0008059 3300053077 Bacteria 6210
180 Ga0495612_0001923 3300053078 Bacteria 8553
181 Ga0500583_0108326 3300053092 Bacteria 1366
182 Ga0500617_108279 3300053124 Bacteria 1165
183 Ga0466962_0000519 3300061719 Bacteria 16864
184 Ga0530510_0143867 3300061734 Bacteria 1758

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048905 Ga0496102_0461842 Ga0496102_0461842_38_889 268
2 3300031824 Ga0307413_10032672 Ga0307413_100326722 287
3 3300031901 Ga0307406_10006693 Ga0307406_100066932 287
4 3300031995 Ga0307409_100000054 Ga0307409_10000005411 287
5 3300032002 Ga0307416_100000817 Ga0307416_1000008173 287
6 3300032126 Ga0307415_100000174 Ga0307415_10000017412 287
7 3300009098 Ga0105245_10397240 Ga0105245_103972402 289
8 3300048905 Ga0496102_0473226 Ga0496102_0473226_243_1160 297
9 3300028794 Ga0307515_10091759 Ga0307515_100917592 306
10 3300030522 Ga0307512_10021847 Ga0307512_100218474 306
11 3300030522 Ga0307512_10016484 Ga0307512_100164843 309
12 3300031616 Ga0307508_10007907 Ga0307508_100079073 309
13 3300046507 Ga0495606_0000307 Ga0495606_0000307_33182_34198 310
14 3300046616 Ga0495668_0000563 Ga0495668_0000563_6783_7799 310
15 3300046660 Ga0495625_0000763 Ga0495625_0000763_23990_25006 310
16 3300048091 Ga0495626_0000029 Ga0495626_0000029_1449_2465 310
17 3300005614 Ga0068856_100168944 Ga0068856_1001689442 315
18 3300026078 Ga0207702_10369626 Ga0207702_103696261 315
19 3300031616 Ga0307508_10218986 Ga0307508_102189862 317
20 3300005548 Ga0070665_100018811 Ga0070665_1000188115 318
21 3300005563 Ga0068855_100016099 Ga0068855_1000160993 318
22 3300009093 Ga0105240_10019628 Ga0105240_100196282 318
23 3300009174 Ga0105241_10172308 Ga0105241_101723083 318
24 3300009545 Ga0105237_10266656 Ga0105237_102666562 318
25 3300009551 Ga0105238_10031997 Ga0105238_100319975 318
26 3300010375 Ga0105239_10017457 Ga0105239_100174577 318
27 3300049823 Ga0501044_0165917 Ga0501044_0165917_649_1641 318
28 3300025904 Ga0207647_10002415 Ga0207647_100024156 319
29 3300025911 Ga0207654_10073582 Ga0207654_100735823 319
30 3300025913 Ga0207695_10008750 Ga0207695_100087502 319
31 3300025914 Ga0207671_10000467 Ga0207671_100004672 319
32 3300025924 Ga0207694_10001430 Ga0207694_1000143018 319
33 3300025949 Ga0207667_10398617 Ga0207667_103986172 319
34 3300026142 Ga0207698_10176235 Ga0207698_101762352 319
35 3300031456 Ga0307513_10000007 Ga0307513_10000007164 321
36 3300028786 Ga0307517_10198427 Ga0307517_101984271 323
37 3300013307 Ga0157372_10372793 Ga0157372_103727931 324
38 3300038443 Ga0395901_0664182 Ga0395901_0664182_49_1032 324
39 3300044693 Ga0466961_0270337 Ga0466961_0270337_10_999 324
40 3300048927 Ga0496124_0056767 Ga0496124_0056767_1203_2195 326
41 3300044693 Ga0466961_0117138 Ga0466961_0117138_163_1155 329
42 iso_pu_bacteria 8056060235 8056062869 330
43 3300046454 Ga0495592_0039439 Ga0495592_0039439_534_1544 331
44 3300046462 Ga0495651_0007188 Ga0495651_0007188_4800_5810 331
45 3300046463 Ga0495653_0054973 Ga0495653_0054973_1581_2591 331
46 3300046472 Ga0495580_0053447 Ga0495580_0053447_963_1973 331
47 3300046476 Ga0495662_0000513 Ga0495662_0000513_7580_8590 331
48 3300046511 Ga0495608_0004653 Ga0495608_0004653_3839_4849 331
49 3300046517 Ga0495630_0047084 Ga0495630_0047084_211_1221 331
50 3300046526 Ga0495666_0002029 Ga0495666_0002029_885_1895 331
51 3300046529 Ga0495652_0020682 Ga0495652_0020682_3839_4849 331
52 3300046531 Ga0495665_0000872 Ga0495665_0000872_7517_8527 331
53 3300046533 Ga0495640_0028403 Ga0495640_0028403_2910_3920 331
54 3300046535 Ga0495586_0005458 Ga0495586_0005458_5271_6281 331
55 3300046543 Ga0495645_0015013 Ga0495645_0015013_325_1335 331
56 3300046559 Ga0495667_0011806 Ga0495667_0011806_4034_5044 331
57 3300046663 Ga0495635_0012453 Ga0495635_0012453_2659_3669 331
58 3300046675 Ga0495657_0006971 Ga0495657_0006971_7549_8559 331
59 3300046678 Ga0495599_0019298 Ga0495599_0019298_2531_3541 331
60 3300046680 Ga0495646_0020667 Ga0495646_0020667_3044_4054 331
61 3300046689 Ga0495613_0032455 Ga0495613_0032455_2659_3669 331
62 3300047315 Ga0495581_0003573 Ga0495581_0003573_735_1745 331
63 3300047317 Ga0495604_0001909 Ga0495604_0001909_7455_8465 331
64 3300047319 Ga0495674_0078830 Ga0495674_0078830_534_1544 331
65 3300047471 Ga0495684_0017617 Ga0495684_0017617_2910_3920 331
66 3300047673 Ga0495593_0006989 Ga0495593_0006989_3669_4679 331
67 3300053077 Ga0495601_0008059 Ga0495601_0008059_3034_4044 331
68 iso_pu_bacteria 2558860112 2558911311 332
69 iso_pu_bacteria 2861520306 2861524757 332
70 iso_pu_bacteria 2884693830 2884700554 332
71 iso_pu_bacteria 2895442618 2895450225 332
72 iso_pu_bacteria 2643221601 2644013707 333
73 iso_pu_bacteria 2643221631 2644178664 333
74 iso_pu_bacteria 2751185782 2753263006 333
75 iso_pu_bacteria 2857737099 2857739716 333
76 iso_pu_bacteria 2861520306 2861522199 333
77 iso_pu_bacteria 2891395885 2891398056 333
78 3300013308 Ga0157375_10493351 Ga0157375_104933511 334
79 3300031731 Ga0307405_10107394 Ga0307405_101073941 334
80 3300031731 Ga0307405_10240808 Ga0307405_102408082 334
81 3300031889 Ga0326468_10000172 Ga0326468_100001724 334
82 3300031901 Ga0307406_10283453 Ga0307406_102834532 334
83 3300032002 Ga0307416_100269216 Ga0307416_1002692162 334
84 3300041451 Ga0451791_0604469 Ga0451791_0604469_836_1849 334
85 3300041452 Ga0451793_1383052 Ga0451793_1383052_718_1731 334
86 3300041452 Ga0451793_1438464 Ga0451793_1438464_370_1383 334
87 3300041491 Ga0451833_0191171 Ga0451833_0191171_92_1105 334
88 3300041498 Ga0451841_0080544 Ga0451841_0080544_86_1099 334
89 3300041509 Ga0451843_0429477 Ga0451843_0429477_663_1676 334
90 3300041512 Ga0451853_2504315 Ga0451853_2504315_1539_2552 334
91 3300048911 Ga0496108_0011098 Ga0496108_0011098_1095_2126 334
92 3300048912 Ga0496109_0144103 Ga0496109_0144103_913_1944 334
93 3300048913 Ga0496110_0195805 Ga0496110_0195805_292_1323 334
94 iso_pu_bacteria 2515154088 2515496147 334
95 iso_pu_bacteria 2515154129 2515719918 334
96 iso_pu_bacteria 2515154137 2515758408 334
97 iso_pu_bacteria 2515154202 2516082467 334
98 iso_pu_bacteria 2515154203 2516090411 334
99 iso_pu_bacteria 2643221631 2644178418 334
100 iso_pu_bacteria 2773857762 2774397294 334
101 iso_pu_bacteria 2808606439 2809193584 334
102 iso_pu_bacteria 2816332119 2816427730 334
103 iso_pu_bacteria 2818991472 2819738997 334
104 iso_pu_bacteria 2891968417 2891969936 334
105 iso_pu_bacteria 8056054917 8056055490 334
106 3300009098 Ga0105245_10246040 Ga0105245_102460401 335
107 3300014325 Ga0163163_10157390 Ga0163163_101573902 335
108 3300014969 Ga0157376_10084681 Ga0157376_100846812 335
109 3300046516 Ga0495628_0004793 Ga0495628_0004793_3851_4867 335
110 3300046516 Ga0495628_0336194 Ga0495628_0336194_57_1073 335
111 3300046680 Ga0495646_0085572 Ga0495646_0085572_762_1778 335
112 3300046681 Ga0495647_0111366 Ga0495647_0111366_35_1090 335
113 3300048903 Ga0496100_0209481 Ga0496100_0209481_245_1300 335
114 3300048904 Ga0496101_0036558 Ga0496101_0036558_2132_3190 335
115 3300048905 Ga0496102_0029748 Ga0496102_0029748_86_1144 335
116 3300048906 Ga0496103_0165298 Ga0496103_0165298_278_1336 335
117 3300048907 Ga0496104_0006638 Ga0496104_0006638_4037_5092 335
118 3300048911 Ga0496108_0021481 Ga0496108_0021481_775_1833 335
119 3300048912 Ga0496109_0041364 Ga0496109_0041364_2199_3257 335
120 3300048912 Ga0496109_0052237 Ga0496109_0052237_682_1737 335
121 3300048917 Ga0496114_0153924 Ga0496114_0153924_397_1455 335
122 3300048918 Ga0496115_0130577 Ga0496115_0130577_917_1975 335
123 3300053077 Ga0495601_0005984 Ga0495601_0005984_3576_4592 335
124 iso_pu_bacteria 2643221542 2643732998 335
125 iso_pu_bacteria 2643221553 2643784685 335
126 iso_pu_bacteria 2643221630 2644171790 335
127 iso_pu_bacteria 2643221724 2644678127 335
128 iso_pu_bacteria 2728369380 2730231132 335
129 iso_pu_bacteria 2747842429 2747953891 335
130 iso_pu_bacteria 2852663356 2852663615 335
131 iso_pu_bacteria 2919395869 2919397373 335
132 iso_pu_bacteria 2946080515 2946083542 335
133 iso_pu_bacteria 8004182704 8004184020 335
134 3300002738 JGI25154J39366_1001625 JGI25154J39366_10016256 336
135 3300005436 Ga0070713_100420790 Ga0070713_1004207901 336
136 3300025246 Ga0209646_1000014 Ga0209646_1000014537 336
137 3300028794 Ga0307515_10023624 Ga0307515_100236245 336
138 3300032004 Ga0307414_10036989 Ga0307414_100369892 336
139 3300032004 Ga0307414_10136566 Ga0307414_101365662 336
140 3300033179 Ga0307507_10191710 Ga0307507_101917101 336
141 3300041451 Ga0451791_0411204 Ga0451791_0411204_510_1541 336
142 3300046453 Ga0495627_000971 Ga0495627_000971_1973_3004 336
143 3300046463 Ga0495653_0023284 Ga0495653_0023284_2974_4008 336
144 3300048928 Ga0496125_0054247 Ga0496125_0054247_451_1473 336
145 iso_pu_bacteria 2811994878 2812352473 336
146 3300003203 JGI25406J46586_10004492 JGI25406J46586_100044921 337
147 3300005434 Ga0070709_10174393 Ga0070709_101743931 337
148 3300005844 Ga0068862_100298960 Ga0068862_1002989602 337
149 3300005985 Ga0081539_10000927 Ga0081539_1000092722 337
150 3300006847 Ga0075431_100053590 Ga0075431_1000535904 337
151 3300025945 Ga0207679_10135780 Ga0207679_101357801 337
152 3300026067 Ga0207678_10096631 Ga0207678_100966312 337
153 3300028794 Ga0307515_10056710 Ga0307515_100567102 337
154 3300028794 Ga0307515_10149011 Ga0307515_101490112 337
155 3300031456 Ga0307513_10006376 Ga0307513_100063765 337
156 3300031616 Ga0307508_10094161 Ga0307508_100941611 337
157 3300041404 Ga0439436_0007154 Ga0439436_0007154_1735_2784 337
158 3300041406 Ga0439439_0001614 Ga0439439_0001614_564_1613 337
159 3300044693 Ga0466961_0007691 Ga0466961_0007691_3666_4688 337
160 3300045836 Ga0466958_0057310 Ga0466958_0057310_567_1589 337
161 3300046499 Ga0495594_0072881 Ga0495594_0072881_477_1520 337
162 3300048904 Ga0496101_0129410 Ga0496101_0129410_867_1886 337
163 3300048905 Ga0496102_0064486 Ga0496102_0064486_79_1098 337
164 3300048908 Ga0496105_0227675 Ga0496105_0227675_237_1256 337
165 3300048911 Ga0496108_0000083 Ga0496108_0000083_34432_35448 337
166 3300048917 Ga0496114_0376212 Ga0496114_0376212_177_1196 337
167 3300049575 Ga0501039_0085854 Ga0501039_0085854_967_1995 337
168 3300049576 Ga0501040_0133007 Ga0501040_0133007_92_1117 337
169 3300049582 Ga0501048_0128938 Ga0501048_0128938_372_1400 337
170 3300049590 Ga0501074_0019018 Ga0501074_0019018_2319_3347 337
171 3300049822 Ga0501035_0076832 Ga0501035_0076832_1599_2627 337
172 3300049823 Ga0501044_0027711 Ga0501044_0027711_1770_2798 337
173 3300050508 nmdc:mga09592_230841_c1 nmdc:mga09592_230841_c1_400_1419 337
174 3300050510 nmdc:mga06r32_44506_c1 nmdc:mga06r32_44506_c1_351_1370 337
175 3300053092 Ga0500583_0108326 Ga0500583_0108326_62_1081 337
176 3300053124 Ga0500617_108279 Ga0500617_108279_95_1114 337
177 3300061734 Ga0530510_0143867 Ga0530510_0143867_447_1460 337
178 3300001989 JGI24739J22299_10003303 JGI24739J22299_100033036 338
179 3300005563 Ga0068855_100033368 Ga0068855_1000333683 338
180 3300006871 Ga0075434_100535378 Ga0075434_1005353781 338
181 3300009093 Ga0105240_10014959 Ga0105240_100149598 338
182 3300009174 Ga0105241_10004215 Ga0105241_100042153 338
183 3300009545 Ga0105237_10008533 Ga0105237_100085336 338
184 3300009551 Ga0105238_10004800 Ga0105238_1000480010 338
185 3300010375 Ga0105239_10005963 Ga0105239_1000596310 338
186 3300013105 Ga0157369_10102819 Ga0157369_101028193 338
187 3300013307 Ga0157372_10032640 Ga0157372_100326404 338
188 3300025904 Ga0207647_10007208 Ga0207647_100072083 338
189 3300025913 Ga0207695_10001103 Ga0207695_1000110320 338
190 3300025914 Ga0207671_10000389 Ga0207671_1000038938 338
191 3300025924 Ga0207694_10000549 Ga0207694_1000054923 338
192 3300025981 Ga0207640_10043364 Ga0207640_100433643 338
193 3300025986 Ga0207658_10043001 Ga0207658_100430012 338
194 3300026067 Ga0207678_10092400 Ga0207678_100924002 338
195 3300026078 Ga0207702_10031709 Ga0207702_100317093 338
196 3300028379 Ga0268266_10102633 Ga0268266_101026331 338
197 3300031507 Ga0307509_10043951 Ga0307509_100439512 338
198 3300031616 Ga0307508_10060304 Ga0307508_100603042 338
199 3300033179 Ga0307507_10028329 Ga0307507_100283297 338
200 3300044684 Ga0466966_0176228 Ga0466966_0176228_159_1283 338
201 3300044719 Ga0466971_0001883 Ga0466971_0001883_217_1257 338
202 3300044765 Ga0466970_0025906 Ga0466970_0025906_567_1598 338
203 3300044765 Ga0466970_0027126 Ga0466970_0027126_1021_2064 338
204 3300045049 Ga0466959_0000597 Ga0466959_0000597_11225_12265 338
205 3300045049 Ga0466959_0132228 Ga0466959_0132228_691_1722 338
206 3300045836 Ga0466958_0047703 Ga0466958_0047703_1439_2554 338
207 3300046454 Ga0495592_0019635 Ga0495592_0019635_3504_4613 338
208 3300046462 Ga0495651_0001022 Ga0495651_0001022_3023_4132 338
209 3300046514 Ga0495618_0017932 Ga0495618_0017932_2056_3165 338
210 3300046529 Ga0495652_0002022 Ga0495652_0002022_17727_18836 338
211 3300046535 Ga0495586_0029057 Ga0495586_0029057_46_1155 338
212 3300046663 Ga0495635_0003230 Ga0495635_0003230_9646_10755 338
213 3300046679 Ga0495623_0020824 Ga0495623_0020824_1003_2112 338
214 3300047315 Ga0495581_0046427 Ga0495581_0046427_428_1459 338
215 3300048921 Ga0496118_0056558 Ga0496118_0056558_1297_2364 338
216 3300048929 Ga0496126_0013418 Ga0496126_0013418_1927_2973 338
217 3300053078 Ga0495612_0001923 Ga0495612_0001923_180_1289 338
218 3300061719 Ga0466962_0000519 Ga0466962_0000519_8464_9504 338
219 iso_pu_bacteria 2643221546 2643752620 338
220 iso_pu_bacteria 2906799679 2906802869 338
221 iso_pu_bacteria 2984580707 2984582369 338

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00356

LacI

Bacterial regulatory proteins, lacI family

41

86

0.98

PF13377

Peripla_BP_3

Periplasmic binding protein-like domain

211

372

0.89

PF00532

Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

97

366

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
3k4h-assembly1.cif.gz_A crystal structure of putative transcriptional regulator laci from bacillus cereus subsp. cytotoxis nvh 391-98 0.9507 63 333
4o5a-assembly1.cif.gz_A-2 the crystal structure of a laci family transcriptional regulator from bifidobacterium animalis subsp. lactis dsm 10140 0.9341 60 338
3c3k-assembly1.cif.gz_A crystal structure of an uncharacterized protein from actinobacillus succinogenes 0.9292 62 334
3huu-assembly1.cif.gz_B crystal structure of transcription regulator like protein from staphylococcus haemolyticus 0.9284 64 336
3huu-assembly2.cif.gz_D crystal structure of transcription regulator like protein from staphylococcus haemolyticus 0.928 62 335
ID Description Score Start End Superfamily
2jcgA01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9508 5 50 1.10.260.40
4o5aA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9472 166 338 3.40.50.2300
4o5aA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9404 166 338 3.40.50.2300
3k4hB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9234 168 292 3.40.50.2300
3cs3A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9227 168 292 3.40.50.2300
ID Description Score Start End GO Terms
AF-W4TH64-F1-model_v4 deleted 0.9711 60 335
AF-A0A6V8PUR8-F1-model_v4 LacI family transcriptional regulator 0.9455 234 334 GO:0000976
GO:0003700
AF-A0A5B8IXZ4-F1-model_v4 deleted 0.943 63 337
AF-X1A5M9-F1-model_v4 Transcriptional regulator LacI/GalR-like sensor domain-containing protein 0.9351 199 335 GO:0000976
GO:0003700
AF-A0A154MPU9-F1-model_v4 Transcriptional regulator LacI/GalR-like sensor domain-containing protein 0.9346 163 338 GO:0000976
GO:0003700

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