|
Taxon Oid |
3300031889
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Soil microbial communities |
| Genome Name Sample Name |
Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO |
| Sequencing Center |
Illumina |
| Img Genome Id |
3300031889 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Ncbi Species |
Soil microbial communities |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.16.5 |
| Img Submission Id |
203717 |
|
Gold Analysis Project Id
|
Ga0326468
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0347953
|
|
Gold Study Id
|
Gs0135778
|
| Add Date |
11/30/2018 00:00:00 |
| Assembly Method |
SPAdes v. 3.9.0 |
| Comments |
released by JGI data releasing policy |
| Has Coverage |
False |
| Public Release Date |
03/04/2022 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Kevin Thai |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Kevin Thai |
| Contact Email |
[email protected] |
| Contact Name |
Kevin Thai |
| Is Published |
False |
| Sequencing Method |
Illumina NextSeq 550 |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Geographic Location |
Encinitas, CA, USA |
| Habitat |
Rhizosphere soil |
| Isolation |
Wild oat top soil |
| Isolation Country |
8855 |
| Latitude |
33.0573 |
| Longitude |
-117.223 |
| Host Name |
Chasmanthium latifolium |
| Genome Size Assembled |
1180699549 |
| Gene Count Assembled |
4381986 |