F332807

General Info

Members Datasets Scaffolds Average Seq Length
220 147 211 375

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2511231221|2512033932
Length 427
Sequence GFDLLATDGRARRGRVTTAHGTIETPAFMPVGTAATVKAMTTDAVASTGAEILLGNTYHLMLRPTAERVAQLGGLHRFMNWNKPILTDSGGFQVMSLSDLRTMSEEGVTFKSHLDGSRHHLTPERSIQIQHMLDSNITMCLDECTPFPATEAQAESSMRLSMRWARRSKDAFVERPGYGLFGIVQGGIYPEQRAESVAALTDIGFDGYAIGGLAVGEGQETMFRVLDFTEPLMVKDRPRYLMGVGRPSDLIGAVRRGVDMFDCVMPTRSGRTGQAFVRRGTINIRNARHAHDERPLDAECGCPACRSYSRGYLHHLFKADEMLGPMLLTWHNLHYYQDVMRTMRQAIADGNFEEVAGAMEARLNEGDIEATVDPIAKPGKPPKQGRPPKAGKDSDPPKAGKDSAPPKAGKDSAPPKIGREAEEKTDD

Samples

Sample ID Description Type Environment
1 2511231221 Azospirillum lipoferum 4B Isolate Rhizosphere
2 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
3 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
4 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
5 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
6 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
7 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
8 2897803580 Azospirillum doebereinerae GSF71 Isolate Unclassified
9 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
10 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
11 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
14 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
15 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
16 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
29 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
32 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
33 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
34 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
35 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
36 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
39 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
40 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
41 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
45 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
49 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
50 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
51 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
52 3300023561 Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU2 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
53 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
54 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
71 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
74 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
75 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
76 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
77 3300031828 Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Unclassified
78 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
79 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
80 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
81 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
82 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
83 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
84 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
85 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
86 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
87 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
88 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
89 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
90 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
91 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
92 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
93 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
94 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
95 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
96 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
97 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
98 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
99 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
100 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
101 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
102 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
103 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
104 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
105 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
106 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
107 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
108 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
121 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
122 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
123 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
124 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
125 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
126 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
127 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
129 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
130 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
131 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
132 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
133 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
134 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
135 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
136 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
137 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
138 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
139 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
140 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
141 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
142 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
143 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
144 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
145 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
146 3300053733 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 endosphere Metagenome Endosphere
147 8054002106 Azospirillum lipoferum 59b Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95
Metatranscriptomes 0.91
Isolates 4.09

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.09
Nodule 0.45
Rhizoplane 1.36
Rhizosphere 77.27
Stem 0
Stem Tuber 0
Unclassified 11.82

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25153J46596_10000092 3300003215 Bacteria 105005
2 Ga0065704_10107362 3300005289 Bacteria 2058
3 Ga0070690_100018814 3300005330 Bacteria 4180
4 Ga0070690_100121137 3300005330 Bacteria 1756
5 Ga0070680_100002368 3300005336 Bacteria 13929
6 Ga0070691_10013265 3300005341 Bacteria 3775
7 Ga0070669_100036412 3300005353 Bacteria 3566
8 Ga0070713_100103348 3300005436 Bacteria 2472
9 Ga0070708_100066670 3300005445 Bacteria 3231
10 Ga0070706_100097692 3300005467 Bacteria 2728
11 Ga0070698_100004001 3300005471 Bacteria 16220
12 Ga0070679_100005262 3300005530 Bacteria 11976
13 Ga0070684_100030243 3300005535 Bacteria 4599
14 Ga0070696_100057866 3300005546 Bacteria 2706
15 Ga0070665_100037527 3300005548 Bacteria 4873
16 Ga0070665_100220479 3300005548 Bacteria 1897
17 Ga0070704_100015958 3300005549 Bacteria 4734
18 Ga0070704_100118621 3300005549 Bacteria 2028
19 Ga0068855_100029299 3300005563 Bacteria 6583
20 Ga0068855_100256471 3300005563 Bacteria 1949
21 Ga0068857_100013787 3300005577 Bacteria 7041
22 Ga0068856_100125122 3300005614 Bacteria 2574
23 Ga0068863_100013386 3300005841 Bacteria 7910
24 Ga0068860_100044301 3300005843 Bacteria 4241
25 Ga0068860_100160294 3300005843 Bacteria 2169
26 Ga0081455_10003086 3300005937 Bacteria 19410
27 Ga0070717_10029690 3300006028 Bacteria 4389
28 Ga0075363_100100060 3300006048 Bacteria 1604
29 Ga0075362_10006179 3300006177 Bacteria 4446
30 Ga0075369_10000827 3300006186 Bacteria 10193
31 Ga0075366_10018878 3300006195 Bacteria 3985
32 Ga0075428_100005684 3300006844 Bacteria 13863
33 Ga0075428_100173605 3300006844 Bacteria 2335
34 Ga0075433_10031497 3300006852 Bacteria 4534
35 Ga0075434_100081647 3300006871 Bacteria 3230
36 Ga0075429_100027775 3300006880 Bacteria 4911
37 Ga0075436_100025604 3300006914 Bacteria 4060
38 Ga0075435_100007775 3300007076 Bacteria 7662
39 Ga0075435_100158322 3300007076 Bacteria 1907
40 Ga0099794_10004138 3300007265 Bacteria 5651
41 Ga0105240_10000407 3300009093 Bacteria 79940
42 Ga0105240_10000943 3300009093 Bacteria 51705
43 Ga0105240_10008364 3300009093 Bacteria 14807
44 Ga0111539_10072629 3300009094 Bacteria 4057
45 Ga0105238_10220044 3300009551 Bacteria 1875
46 Ga0105238_10232517 3300009551 Bacteria 1820
47 Ga0157373_10211578 3300013100 Bacteria 1367
48 Ga0157372_10083500 3300013307 Bacteria 3618
49 Ga0157372_10257216 3300013307 Bacteria 2027
50 Ga0157375_10154811 3300013308 Bacteria 2430
51 Ga0213872_10000996 3300021361 Bacteria 19803
52 Ga0213872_10002705 3300021361 Bacteria 10206
53 Ga0213874_10000263 3300021377 Bacteria 10106
54 Ga0213876_10031955 3300021384 Bacteria 2776
55 Ga0213875_10002041 3300021388 Bacteria 12410
56 Ga0213875_10015590 3300021388 Bacteria 3696
57 Ga0247518_102805 3300023561 Eukaryota 1998
58 Ga0209758_1000029 3300025297 Bacteria 520787
59 Ga0209758_1023667 3300025297 Bacteria 2768
60 Ga0207684_10049458 3300025910 Bacteria 3566
61 Ga0207707_10001025 3300025912 Bacteria 26798
62 Ga0207695_10000629 3300025913 Bacteria 70641
63 Ga0207695_10002369 3300025913 Bacteria 27990
64 Ga0207695_10045796 3300025913 Bacteria 4641
65 Ga0207671_10192400 3300025914 Bacteria 1591
66 Ga0207660_10005894 3300025917 Bacteria 7960
67 Ga0207660_10112887 3300025917 Bacteria 2048
68 Ga0207646_10034753 3300025922 Bacteria 4556
69 Ga0207646_10357315 3300025922 Bacteria 1320
70 Ga0207681_10051446 3300025923 Bacteria 2791
71 Ga0207694_10187957 3300025924 Bacteria 1677
72 Ga0207700_10066040 3300025928 Bacteria 2763
73 Ga0207661_10051956 3300025944 Bacteria 3272
74 Ga0207667_10019039 3300025949 Bacteria 7674
75 Ga0207667_10105842 3300025949 Bacteria 2902
76 Ga0207702_10078085 3300026078 Bacteria 2865
77 Ga0207702_10092509 3300026078 Bacteria 2650
78 Ga0207641_10027389 3300026088 Bacteria 4706
79 Ga0207674_10018319 3300026116 Bacteria 7613
80 Ga0207674_10053790 3300026116 Bacteria 4102
81 Ga0207675_100099602 3300026118 Bacteria 2737
82 Ga0207683_10025540 3300026121 Bacteria 5097
83 Ga0207428_10224383 3300027907 Bacteria 1407
84 Ga0268266_10073140 3300028379 Bacteria 2974
85 Ga0268264_10102085 3300028381 Bacteria 2495
86 Ga0268264_10135921 3300028381 Bacteria 2186
87 Ga0265318_10011939 3300028577 Bacteria 3714
88 Ga0265324_10004796 3300029957 Bacteria 5977
89 Ga0265331_10000145 3300031250 Bacteria 92545
90 Ga0265327_10000163 3300031251 Bacteria 143328
91 Ga0316043_104613 3300031828 Eukaryota 1949
92 Ga0307414_10291566 3300032004 Bacteria 1376
93 Ga0373937_0040759 3300036401 Bacteria 4234
94 Ga0316582_0127626 3300036647 Bacteria 1706
95 Ga0395899_0012741 3300037312 Bacteria 6442
96 Ga0395899_0017235 3300037312 Bacteria 5505
97 Ga0395899_0028309 3300037312 Bacteria 4220
98 Ga0395899_0046535 3300037312 Bacteria 3232
99 Ga0395900_0005722 3300037418 Bacteria 12991
100 Ga0395900_0007584 3300037418 Bacteria 11205
101 Ga0395900_0255353 3300037418 Bacteria 1752
102 Ga0395898_0004095 3300037466 Bacteria 15992
103 Ga0395898_0007168 3300037466 Bacteria 11838
104 Ga0395898_0044326 3300037466 Bacteria 4379
105 Ga0395905_0000002 3300037471 Bacteria 1356358
106 Ga0436364_0188512 3300037853 Bacteria 1159
107 Ga0436364_0202475 3300037853 Bacteria 14640
108 Ga0436364_0849321 3300037853 Bacteria 2102
109 Ga0436364_1142809 3300037853 Bacteria 40161
110 Ga0436364_1298938 3300037853 Bacteria 23501
111 Ga0395901_0013836 3300038443 Bacteria 8207
112 Ga0395901_0013936 3300038443 Bacteria 8182
113 Ga0395901_0016154 3300038443 Bacteria 7603
114 Ga0395901_0138440 3300038443 Bacteria 2558
115 Ga0400483_001775 3300039062 Unclassified 2855
116 Ga0400483_157530 3300039062 Unclassified 2336
117 Ga0400483_194980 3300039062 Bacteria 1401
118 Ga0400483_201825 3300039062 Bacteria 8498
119 Ga0400483_229655 3300039062 Bacteria 22942
120 Ga0400483_263939 3300039062 Bacteria 50980
121 Ga0436365_1924833 3300039437 Bacteria 4607
122 Ga0436360_0773990 3300039438 Bacteria 4689
123 Ga0436360_1141007 3300039438 Bacteria 2362
124 Ga0436360_1351724 3300039438 Bacteria 2885
125 Ga0436361_0084315 3300039447 Bacteria 3258
126 Ga0436361_0215284 3300039447 Bacteria 11054
127 Ga0436361_0480200 3300039447 Bacteria 2730
128 Ga0436361_0531913 3300039447 Bacteria 1392
129 Ga0436361_0620554 3300039447 Bacteria 4522
130 Ga0436361_0641214 3300039447 Bacteria 2667
131 Ga0436361_1001866 3300039447 Bacteria 37490
132 Ga0436363_0365326 3300039450 Bacteria 16368
133 Ga0451577_0101685 3300042876 Bacteria 2568
134 Ga0451577_0167143 3300042876 Bacteria 1982
135 Ga0453683_0000219 3300044673 Bacteria 76281
136 Ga0453684_0000006 3300044712 Bacteria 1364191
137 Ga0453684_0000031 3300044712 Bacteria 752632
138 Ga0453684_0005214 3300044712 Bacteria 26067
139 Ga0453684_0039377 3300044712 Bacteria 6443
140 Ga0453684_0109166 3300044712 Bacteria 3366
141 Ga0451576_0000303 3300045051 Bacteria 119347
142 Ga0451576_0009036 3300045051 Bacteria 11606
143 Ga0451576_0153699 3300045051 Bacteria 2400
144 Ga0451576_0391034 3300045051 Bacteria 1458
145 Ga0466958_0000102 3300045836 Bacteria 26984
146 Ga0495603_0016976 3300046455 Bacteria 4405
147 Ga0495640_0038118 3300046533 Bacteria 3383
148 Ga0495645_0059146 3300046543 Bacteria 2779
149 Ga0495622_0008988 3300046557 Bacteria 4628
150 Ga0495611_0030976 3300046648 Bacteria 2353
151 Ga0495649_0024335 3300046694 Bacteria 3377
152 Ga0495674_0025917 3300047319 Bacteria 5367
153 Ga0495672_0012077 3300047320 Bacteria 6048
154 Ga0496110_0112639 3300048913 Bacteria 2446
155 Ga0496111_0371580 3300048914 Bacteria 1058
156 Ga0496112_0072810 3300048915 Bacteria 3397
157 Ga0501031_0008310 3300049568 Bacteria 6751
158 Ga0501032_0082204 3300049569 Bacteria 2143
159 Ga0501032_0113940 3300049569 Bacteria 1789
160 Ga0501033_0001987 3300049570 Bacteria 17822
161 Ga0501033_0032074 3300049570 Bacteria 3944
162 Ga0501034_0001484 3300049571 Bacteria 30939
163 Ga0501034_0007258 3300049571 Bacteria 11824
164 Ga0501036_0001173 3300049572 Bacteria 19942
165 Ga0501036_0001811 3300049572 Bacteria 16557
166 Ga0501037_0019947 3300049573 Bacteria 4947
167 Ga0501037_0190376 3300049573 Bacteria 1453
168 Ga0501038_0025428 3300049574 Bacteria 5277
169 Ga0501038_0105365 3300049574 Bacteria 2342
170 Ga0501038_0120266 3300049574 Bacteria 2167
171 Ga0501039_0028719 3300049575 Bacteria 4282
172 Ga0501043_0008628 3300049579 Bacteria 8032
173 Ga0501043_0079145 3300049579 Bacteria 2583
174 Ga0501043_0326458 3300049579 Bacteria 1169
175 Ga0501046_0022621 3300049580 Bacteria 5178
176 Ga0501047_0000010 3300049581 Bacteria 429357
177 Ga0501047_0013152 3300049581 Bacteria 7838
178 Ga0501047_0064800 3300049581 Bacteria 3524
179 Ga0501047_0248101 3300049581 Bacteria 1629
180 Ga0501048_0009371 3300049582 Bacteria 7352
181 Ga0501068_0006818 3300049584 Bacteria 6316
182 Ga0501070_0186990 3300049586 Bacteria 1704
183 Ga0501073_0050818 3300049589 Bacteria 2904
184 Ga0501074_0058860 3300049590 Bacteria 2768
185 Ga0501077_0024547 3300049593 Bacteria 3829
186 Ga0501080_0028953 3300049742 Bacteria 5156
187 Ga0501083_0029641 3300049744 Bacteria 3761
188 Ga0501035_0345778 3300049822 Bacteria 1245
189 Ga0501044_0006892 3300049823 Bacteria 12511
190 Ga0501044_0250225 3300049823 Bacteria 1713
191 nmdc:mga03683_5946_c1 3300050489 Bacteria 4153
192 nmdc:mga06z11_101320_c1 3300050494 Bacteria 1580
193 nmdc:mga06z11_68562_c1 3300050494 Bacteria 1870
194 nmdc:mga09592_51255_c1 3300050508 Bacteria 3482
195 nmdc:mga0qj67_30526_c1 3300050509 Bacteria 4197
196 nmdc:mga08y16_202933_c1 3300050511 Bacteria 2054
197 nmdc:mga08y16_64269_c1 3300050511 Bacteria 3832
198 nmdc:mga0a205_23161_c1 3300050515 Bacteria 5890
199 nmdc:mga0sz30_374_c1 3300050516 Bacteria 17102
200 Ga0495601_0053083 3300053077 Bacteria 2561
201 Ga0495595_0128193 3300053084 Bacteria 1239
202 Ga0495619_0008539 3300053085 Bacteria 6481
203 Ga0500578_0073176 3300053086 Bacteria 2183
204 Ga0500555_009236 3300053103 Bacteria 2820
205 Ga0500595_002398 3300053119 Bacteria 9359
206 Ga0500595_024830 3300053119 Bacteria 2086
207 Ga0500658_0018655 3300053134 Bacteria 2604
208 Ga0500568_0003501 3300053139 Bacteria 8715
209 Ga0500616_0000712 3300053153 Bacteria 38496
210 Ga0500637_0002348 3300053178 Bacteria 8389
211 Ga0500552_000152 3300053733 Bacteria 5927

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300042876 Ga0451577_0167143 Ga0451577_0167143_955_1968 314
2 3300021377 Ga0213874_10000263 Ga0213874_100002633 332
3 3300045051 Ga0451576_0391034 Ga0451576_0391034_391_1413 340
4 3300028577 Ga0265318_10011939 Ga0265318_100119393 342
5 3300053084 Ga0495595_0128193 Ga0495595_0128193_163_1200 342
6 3300048914 Ga0496111_0371580 Ga0496111_0371580_13_1044 343
7 3300007076 Ga0075435_100158322 Ga0075435_1001583222 344
8 3300045051 Ga0451576_0009036 Ga0451576_0009036_7842_8936 344
9 3300049579 Ga0501043_0326458 Ga0501043_0326458_101_1138 345
10 3300049823 Ga0501044_0250225 Ga0501044_0250225_16_1053 345
11 3300009094 Ga0111539_10072629 Ga0111539_100726292 346
12 3300050511 nmdc:mga08y16_64269_c1 nmdc:mga08y16_64269_c1_493_1533 346
13 3300021388 Ga0213875_10015590 Ga0213875_100155903 349
14 3300037853 Ga0436364_0202475 Ga0436364_0202475_5453_6592 349
15 3300049574 Ga0501038_0120266 Ga0501038_0120266_345_1499 350
16 3300049593 Ga0501077_0024547 Ga0501077_0024547_817_1971 350
17 3300037312 Ga0395899_0028309 Ga0395899_0028309_3039_4163 353
18 3300038443 Ga0395901_0013836 Ga0395901_0013836_5436_6560 353
19 3300006048 Ga0075363_100100060 Ga0075363_1001000602 360
20 3300039450 Ga0436363_0365326 Ga0436363_0365326_3026_4237 360
21 3300037471 Ga0395905_0000002 Ga0395905_0000002_928886_929992 362
22 3300049568 Ga0501031_0008310 Ga0501031_0008310_3477_4583 362
23 3300049569 Ga0501032_0082204 Ga0501032_0082204_981_2087 362
24 3300049569 Ga0501032_0113940 Ga0501032_0113940_347_1453 362
25 3300049570 Ga0501033_0001987 Ga0501033_0001987_6451_7557 362
26 3300049572 Ga0501036_0001173 Ga0501036_0001173_9363_10469 362
27 3300049573 Ga0501037_0019947 Ga0501037_0019947_93_1199 362
28 3300049574 Ga0501038_0025428 Ga0501038_0025428_3749_4855 362
29 3300049575 Ga0501039_0028719 Ga0501039_0028719_2219_3325 362
30 3300049579 Ga0501043_0008628 Ga0501043_0008628_6124_7230 362
31 3300049579 Ga0501043_0079145 Ga0501043_0079145_775_1881 362
32 3300049581 Ga0501047_0013152 Ga0501047_0013152_3033_4139 362
33 3300005330 Ga0070690_100018814 Ga0070690_1000188144 363
34 3300005353 Ga0070669_100036412 Ga0070669_1000364123 363
35 3300005843 Ga0068860_100044301 Ga0068860_1000443012 363
36 3300013308 Ga0157375_10154811 Ga0157375_101548112 363
37 3300025923 Ga0207681_10051446 Ga0207681_100514463 363
38 3300026118 Ga0207675_100099602 Ga0207675_1000996022 363
39 3300027907 Ga0207428_10224383 Ga0207428_102243832 363
40 3300028381 Ga0268264_10102085 Ga0268264_101020852 363
41 3300044712 Ga0453684_0005214 Ga0453684_0005214_24557_25744 363
42 3300009093 Ga0105240_10000407 Ga0105240_1000040738 364
43 3300025913 Ga0207695_10002369 Ga0207695_100023695 364
44 3300039438 Ga0436360_1351724 Ga0436360_1351724_1562_2683 365
45 3300053119 Ga0500595_024830 Ga0500595_024830_737_1843 365
46 3300005467 Ga0070706_100097692 Ga0070706_1000976923 366
47 3300009093 Ga0105240_10000943 Ga0105240_1000094315 366
48 3300025913 Ga0207695_10000629 Ga0207695_1000062935 366
49 3300039447 Ga0436361_0531913 Ga0436361_0531913_169_1344 366
50 3300025917 Ga0207660_10112887 Ga0207660_101128873 367
51 3300039062 Ga0400483_201825 Ga0400483_201825_1756_2862 367
52 3300039438 Ga0436360_1141007 Ga0436360_1141007_519_1691 367
53 3300044673 Ga0453683_0000219 Ga0453683_0000219_68461_69591 367
54 3300006844 Ga0075428_100005684 Ga0075428_1000056848 368
55 3300006852 Ga0075433_10031497 Ga0075433_100314972 368
56 3300006871 Ga0075434_100081647 Ga0075434_1000816475 368
57 3300006914 Ga0075436_100025604 Ga0075436_1000256045 368
58 3300007076 Ga0075435_100007775 Ga0075435_10000777511 368
59 3300044712 Ga0453684_0039377 Ga0453684_0039377_2588_3703 368
60 3300045051 Ga0451576_0000303 Ga0451576_0000303_58675_59790 368
61 3300045051 Ga0451576_0153699 Ga0451576_0153699_961_2076 368
62 3300050509 nmdc:mga0qj67_30526_c1 nmdc:mga0qj67_30526_c1_2119_3276 368
63 3300050515 nmdc:mga0a205_23161_c1 nmdc:mga0a205_23161_c1_3314_4450 368
64 3300049570 Ga0501033_0032074 Ga0501033_0032074_1545_2663 369
65 3300049574 Ga0501038_0105365 Ga0501038_0105365_401_1519 369
66 3300049581 Ga0501047_0064800 Ga0501047_0064800_1258_2376 369
67 3300049822 Ga0501035_0345778 Ga0501035_0345778_59_1177 369
68 iso_pu_bacteria 2842775625 2842777677 369
69 3300005445 Ga0070708_100066670 Ga0070708_1000666702 370
70 3300005471 Ga0070698_100004001 Ga0070698_1000040016 370
71 3300005546 Ga0070696_100057866 Ga0070696_1000578662 370
72 3300006028 Ga0070717_10029690 Ga0070717_100296902 370
73 3300006880 Ga0075429_100027775 Ga0075429_1000277752 370
74 3300025922 Ga0207646_10034753 Ga0207646_100347532 370
75 3300025922 Ga0207646_10357315 Ga0207646_103573152 370
76 3300029957 Ga0265324_10004796 Ga0265324_100047962 370
77 3300031250 Ga0265331_10000145 Ga0265331_1000014574 370
78 3300037853 Ga0436364_0188512 Ga0436364_0188512_23_1138 370
79 3300039062 Ga0400483_001775 Ga0400483_001775_894_2030 370
80 3300039062 Ga0400483_157530 Ga0400483_157530_1066_2202 370
81 3300039062 Ga0400483_194980 Ga0400483_194980_228_1346 370
82 3300039062 Ga0400483_229655 Ga0400483_229655_2204_3391 370
83 3300039062 Ga0400483_263939 Ga0400483_263939_27186_28319 370
84 3300046455 Ga0495603_0016976 Ga0495603_0016976_1259_2398 370
85 3300046557 Ga0495622_0008988 Ga0495622_0008988_3190_4329 370
86 3300046648 Ga0495611_0030976 Ga0495611_0030976_65_1204 370
87 3300046694 Ga0495649_0024335 Ga0495649_0024335_522_1661 370
88 3300047320 Ga0495672_0012077 Ga0495672_0012077_2696_3835 370
89 3300050508 nmdc:mga09592_51255_c1 nmdc:mga09592_51255_c1_2305_3447 370
90 3300053178 Ga0500637_0002348 Ga0500637_0002348_5574_6713 370
91 3300005548 Ga0070665_100220479 Ga0070665_1002204792 371
92 3300005549 Ga0070704_100015958 Ga0070704_1000159585 371
93 3300021388 Ga0213875_10002041 Ga0213875_100020416 371
94 3300025297 Ga0209758_1023667 Ga0209758_10236672 371
95 3300036647 Ga0316582_0127626 Ga0316582_0127626_114_1241 371
96 3300037853 Ga0436364_0849321 Ga0436364_0849321_499_1632 371
97 3300037853 Ga0436364_1142809 Ga0436364_1142809_30667_31785 371
98 3300039447 Ga0436361_0215284 Ga0436361_0215284_2247_3374 371
99 3300039447 Ga0436361_0641214 Ga0436361_0641214_346_1473 371
100 3300049571 Ga0501034_0007258 Ga0501034_0007258_1658_2779 371
101 3300049572 Ga0501036_0001811 Ga0501036_0001811_1566_2687 371
102 3300049580 Ga0501046_0022621 Ga0501046_0022621_28_1149 371
103 3300049581 Ga0501047_0000010 Ga0501047_0000010_109785_110906 371
104 3300049582 Ga0501048_0009371 Ga0501048_0009371_1297_2418 371
105 3300049589 Ga0501073_0050818 Ga0501073_0050818_402_1523 371
106 3300049590 Ga0501074_0058860 Ga0501074_0058860_717_1838 371
107 3300049742 Ga0501080_0028953 Ga0501080_0028953_1650_2771 371
108 3300049744 Ga0501083_0029641 Ga0501083_0029641_616_1737 371
109 3300049823 Ga0501044_0006892 Ga0501044_0006892_3008_4129 371
110 3300053086 Ga0500578_0073176 Ga0500578_0073176_796_1914 371
111 3300053103 Ga0500555_009236 Ga0500555_009236_1082_2197 371
112 3300053119 Ga0500595_002398 Ga0500595_002398_7374_8489 371
113 3300053153 Ga0500616_0000712 Ga0500616_0000712_30141_31256 371
114 3300005330 Ga0070690_100121137 Ga0070690_1001211372 372
115 3300005436 Ga0070713_100103348 Ga0070713_1001033483 372
116 3300007265 Ga0099794_10004138 Ga0099794_100041386 372
117 3300013307 Ga0157372_10257216 Ga0157372_102572162 372
118 3300025910 Ga0207684_10049458 Ga0207684_100494583 372
119 3300025928 Ga0207700_10066040 Ga0207700_100660402 372
120 3300026121 Ga0207683_10025540 Ga0207683_100255402 372
121 3300039438 Ga0436360_0773990 Ga0436360_0773990_438_1565 372
122 3300042876 Ga0451577_0101685 Ga0451577_0101685_387_1517 372
123 3300044712 Ga0453684_0109166 Ga0453684_0109166_1149_2279 372
124 3300046533 Ga0495640_0038118 Ga0495640_0038118_708_1835 372
125 3300046543 Ga0495645_0059146 Ga0495645_0059146_278_1405 372
126 3300047319 Ga0495674_0025917 Ga0495674_0025917_1124_2251 372
127 3300048913 Ga0496110_0112639 Ga0496110_0112639_951_2081 372
128 3300053077 Ga0495601_0053083 Ga0495601_0053083_874_2001 372
129 3300053085 Ga0495619_0008539 Ga0495619_0008539_4748_5875 372
130 3300005336 Ga0070680_100002368 Ga0070680_10000236810 373
131 3300005341 Ga0070691_10013265 Ga0070691_100132651 373
132 3300005530 Ga0070679_100005262 Ga0070679_1000052624 373
133 3300005549 Ga0070704_100118621 Ga0070704_1001186212 373
134 3300005563 Ga0068855_100029299 Ga0068855_1000292995 373
135 3300005577 Ga0068857_100013787 Ga0068857_1000137872 373
136 3300005614 Ga0068856_100125122 Ga0068856_1001251223 373
137 3300005841 Ga0068863_100013386 Ga0068863_1000133864 373
138 3300005937 Ga0081455_10003086 Ga0081455_100030867 373
139 3300006177 Ga0075362_10006179 Ga0075362_100061794 373
140 3300006186 Ga0075369_10000827 Ga0075369_100008277 373
141 3300006195 Ga0075366_10018878 Ga0075366_100188783 373
142 3300006844 Ga0075428_100173605 Ga0075428_1001736053 373
143 3300009093 Ga0105240_10008364 Ga0105240_100083649 373
144 3300009551 Ga0105238_10232517 Ga0105238_102325172 373
145 3300021361 Ga0213872_10000996 Ga0213872_1000099621 373
146 3300021361 Ga0213872_10002705 Ga0213872_100027056 373
147 3300021384 Ga0213876_10031955 Ga0213876_100319552 373
148 3300023561 Ga0247518_102805 Ga0247518_1028051 373
149 3300025912 Ga0207707_10001025 Ga0207707_1000102524 373
150 3300025913 Ga0207695_10045796 Ga0207695_100457964 373
151 3300025917 Ga0207660_10005894 Ga0207660_100058945 373
152 3300025924 Ga0207694_10187957 Ga0207694_101879572 373
153 3300025949 Ga0207667_10019039 Ga0207667_100190397 373
154 3300026078 Ga0207702_10092509 Ga0207702_100925091 373
155 3300026088 Ga0207641_10027389 Ga0207641_100273891 373
156 3300026116 Ga0207674_10018319 Ga0207674_100183193 373
157 3300026116 Ga0207674_10053790 Ga0207674_100537905 373
158 3300031251 Ga0265327_10000163 Ga0265327_1000016322 373
159 3300031828 Ga0316043_104613 Ga0316043_1046131 373
160 3300036401 Ga0373937_0040759 Ga0373937_0040759_1350_2492 373
161 3300037312 Ga0395899_0012741 Ga0395899_0012741_450_1574 373
162 3300037418 Ga0395900_0007584 Ga0395900_0007584_4944_6068 373
163 3300037418 Ga0395900_0255353 Ga0395900_0255353_533_1675 373
164 3300037466 Ga0395898_0007168 Ga0395898_0007168_7965_9089 373
165 3300037466 Ga0395898_0044326 Ga0395898_0044326_1859_3001 373
166 3300038443 Ga0395901_0016154 Ga0395901_0016154_3477_4601 373
167 3300038443 Ga0395901_0138440 Ga0395901_0138440_1379_2521 373
168 3300039437 Ga0436365_1924833 Ga0436365_1924833_782_1906 373
169 3300039447 Ga0436361_0084315 Ga0436361_0084315_15_1142 373
170 3300039447 Ga0436361_0480200 Ga0436361_0480200_554_1681 373
171 3300039447 Ga0436361_0620554 Ga0436361_0620554_1088_2215 373
172 3300039447 Ga0436361_1001866 Ga0436361_1001866_27405_28532 373
173 3300044712 Ga0453684_0000006 Ga0453684_0000006_508223_509353 373
174 3300044712 Ga0453684_0000031 Ga0453684_0000031_311141_312271 373
175 3300045836 Ga0466958_0000102 Ga0466958_0000102_9010_10137 373
176 3300048915 Ga0496112_0072810 Ga0496112_0072810_1084_2244 373
177 3300049581 Ga0501047_0248101 Ga0501047_0248101_430_1551 373
178 3300049586 Ga0501070_0186990 Ga0501070_0186990_78_1202 373
179 3300050489 nmdc:mga03683_5946_c1 nmdc:mga03683_5946_c1_343_1467 373
180 3300050494 nmdc:mga06z11_101320_c1 nmdc:mga06z11_101320_c1_85_1209 373
181 3300050494 nmdc:mga06z11_68562_c1 nmdc:mga06z11_68562_c1_47_1189 373
182 3300050511 nmdc:mga08y16_202933_c1 nmdc:mga08y16_202933_c1_140_1282 373
183 3300050516 nmdc:mga0sz30_374_c1 nmdc:mga0sz30_374_c1_2619_3743 373
184 3300053134 Ga0500658_0018655 Ga0500658_0018655_1315_2439 373
185 3300053733 Ga0500552_000152 Ga0500552_000152_3131_4255 373
186 iso_pu_bacteria 2511231221 2512033932 373
187 iso_pu_bacteria 2597490356 2599101619 373
188 iso_pu_bacteria 2846952575 2846953656 373
189 iso_pu_bacteria 2848858292 2848860160 373
190 iso_pu_bacteria 2897803580 2897805519 373
191 iso_pu_bacteria 8054002106 8054004582 373
192 3300003215 JGI25153J46596_10000092 JGI25153J46596_1000009257 375
193 3300005289 Ga0065704_10107362 Ga0065704_101073622 375
194 3300005535 Ga0070684_100030243 Ga0070684_1000302434 375
195 3300005548 Ga0070665_100037527 Ga0070665_1000375275 375
196 3300005563 Ga0068855_100256471 Ga0068855_1002564712 375
197 3300005843 Ga0068860_100160294 Ga0068860_1001602942 375
198 3300009551 Ga0105238_10220044 Ga0105238_102200442 375
199 3300013100 Ga0157373_10211578 Ga0157373_102115781 375
200 3300013307 Ga0157372_10083500 Ga0157372_100835003 375
201 3300025297 Ga0209758_1000029 Ga0209758_100002945 375
202 3300025914 Ga0207671_10192400 Ga0207671_101924001 375
203 3300025944 Ga0207661_10051956 Ga0207661_100519562 375
204 3300025949 Ga0207667_10105842 Ga0207667_101058422 375
205 3300026078 Ga0207702_10078085 Ga0207702_100780852 375
206 3300028379 Ga0268266_10073140 Ga0268266_100731403 375
207 3300028381 Ga0268264_10135921 Ga0268264_101359212 375
208 3300032004 Ga0307414_10291566 Ga0307414_102915661 375
209 3300037312 Ga0395899_0017235 Ga0395899_0017235_3740_4876 375
210 3300037312 Ga0395899_0046535 Ga0395899_0046535_407_1543 375
211 3300037418 Ga0395900_0005722 Ga0395900_0005722_16_1152 375
212 3300037466 Ga0395898_0004095 Ga0395898_0004095_13927_15063 375
213 3300037853 Ga0436364_1298938 Ga0436364_1298938_1422_2555 375
214 3300038443 Ga0395901_0013936 Ga0395901_0013936_3245_4381 375
215 3300049571 Ga0501034_0001484 Ga0501034_0001484_1224_2360 375
216 3300049573 Ga0501037_0190376 Ga0501037_0190376_299_1426 375
217 3300049584 Ga0501068_0006818 Ga0501068_0006818_1680_2816 375
218 3300053139 Ga0500568_0003501 Ga0500568_0003501_2722_3852 375
219 iso_pu_bacteria 2522572158 2523102770 375
220 iso_pu_bacteria 2842333319 2842335916 375

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01702

TGT

Queuine tRNA-ribosyltransferase

8

365

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
4hqv-assembly1.cif.gz_A-2 trna-guanine transglycosylase y106f, c158v, v233g mutant in complex with queuine 0.9865 4 364
1efz-assembly1.cif.gz_A-2 mutagenesis and crystallographic studies of zymomonas mobilis trna-guanine transglycosylase to elucidate the role of serine 103 for enzymatic activity 0.9865 4 365
4q8m-assembly1.cif.gz_A-2 trna-guanine transglycosylase (tgt) mutant v262t apo structure 0.9863 4 364
1ozm-assembly1.cif.gz_A y106f mutant of z. mobilis tgt 0.9861 4 364
1wkd-assembly1.cif.gz_A trna-guanine transglycosylase 0.9859 4 364
ID Description Score Start End Superfamily
2ashB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Queuine tRNA-ribosyltransferase-like 0.9814 4 365 3.20.20.105
4jbrA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Queuine tRNA-ribosyltransferase-like 0.9739 4 365 3.20.20.105
af_Q23623_1_366_3.20.20.105 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Queuine tRNA-ribosyltransferase-like 0.9736 3 361 3.20.20.105
2ashB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Queuine tRNA-ribosyltransferase-like 0.9733 4 365 3.20.20.105
af_Q4DZ65_34_446_3.20.20.105 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Queuine tRNA-ribosyltransferase-like 0.9576 13 360 3.20.20.105
ID Description Score Start End GO Terms
AF-A0A3D3SHC0-F1-model_v4 deleted 0.9998 241 366
AF-A0A7Z9XQG1-F1-model_v4 tRNA-guanine transglycosylase (EC 2.4.2.-) 0.9997 244 366 GO:0002099
GO:0005829
GO:0008616
GO:0016757
AF-A0A257CZX3-F1-model_v4 deleted 0.9992 257 366
AF-A0A455U103-F1-model_v4 tRNA-guanine(15) transglycosylase-like domain-containing protein 0.9983 262 366 GO:0002099
GO:0005829
GO:0008616
GO:0016757
AF-A0A2H9NPR9-F1-model_v4 tRNA guanosine(34) transglycosylase Tgt 0.9981 258 366 GO:0002099
GO:0005829
GO:0008616
GO:0016757

Feature Viewer

pLDDT pTM Quality
92.57 0.92 High
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Predicted Structure (AlphaFold2)

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