F332325

General Info

Members Datasets Scaffolds Average Seq Length
220 179 188 635

Family's Representative Sequence

Representative Sequence 3300025910|Ga0207684_10078438|Ga0207684_100784381
Length 694
Sequence LLIVTPAKAGVQGDCSNAALLDSRFRGNDKEAWIAGITMFAKILIANRGEIACRVICTARRLGIATVAVYSEADRSAMHLELADEAWPIGPAPARDSYLNIAAIIEAACKSGAAAVHPGYGFLSENAEFAEACETAGVVFTGPPASAIRSMGSKAEAKVLMQRHGVPLVPGYHGADQSPARLLDEAERVGFPVLIKATAGGGGRGMRVVGSAAEFASALAAARREAEGAFGDDRVLIEKYLERPRHIEIQIFADRHGNTIHLFERDCSIQRRHQKVIEEAPAPGLDEKTRSAMGQAAVAAARAVGYVGAGTVEFIAEAGTFYFIEMNTRLQVEHPVTEAVTGLDLVEWQLRVAADEALPVCQQDLGLRGHAIEARLYAEDPEREFLPQTGTLHRLRFPEPEIARVDTGVRQGDVVTPFYDPMIAKIIAWGEDRTAALARLRRALAETAALGVVTNRDFLARVATHPEFTTGEIDTGFIERHRAVLLPPRRPASDAVLAAATLSRLSGDRFSPWARVDGWRLNGVGHQELLFRDGVEERKVTATARGRDWLLQIGEQPLLVGGEYRADGTLSVVLDGVRRHVMVLDHGLETAVFLDGESWRLVEIDLLAPSAGEDPTAGRLTAPMPGRVTQLMVEPGSRVRRGEPLIIIEAMKMEHTVAAPADGVVEAVRFAVGDLVEEGAELIALAAPQSPQQG

Samples

Sample ID Description Type Environment
1 2511231221 Azospirillum lipoferum 4B Isolate Rhizosphere
2 2513237087 Azorhizobium doebereinerae UFLA1-100 Isolate Nodule
3 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
4 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
5 2643221734 Bosea sp. Root670 Isolate Unclassified
6 2738541307 Variovorax sp. GV008 Isolate Unclassified
7 2738543013 Variovorax sp. BT01 Isolate Unclassified
8 2791355199
9 2828305725 Xanthobacter tagetidis DSM 11105 Isolate Unclassified
10 2835312727 Microvirga calopogonii CCBAU 65841 Isolate Nodule
11 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
12 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
13 2851182111 Bosea sp. Tri-44 Isolate Nodule
14 2876808645 Bradyrhizobium algeriense RST89 Isolate Unclassified
15 2879110137 Bradyrhizobium algeriense RST91 Isolate Nodule
16 2884298095 Microvirga thermotolerans HR1 Isolate Rhizosphere
17 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
18 2897803580 Azospirillum doebereinerae GSF71 Isolate Unclassified
19 2904666416 Bradyrhizobium nanningense CCBAU 51757 Isolate Unclassified
20 2917554339 Chthonobacter rhizosphaerae yh7-1 Isolate Rhizosphere
21 2917699015 Bosea sp. F3-2 Isolate Rhizosphere
22 2935769743 Bradyrhizobium sp. LB12.1 Isolate Nodule
23 2935785616 Bradyrhizobium sp. LB5.2 Isolate Nodule
24 2935793552 Bradyrhizobium sp. LB8.2 Isolate Nodule
25 2945972063 Variovorax paradoxus W2I8 Isolate Rhizosphere
26 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified
27 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
28 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
29 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
30 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
31 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
32 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
33 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
34 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
35 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
36 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
37 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
38 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
39 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
40 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
41 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
42 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
43 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
44 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
45 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
46 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
47 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
48 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
49 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
50 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
51 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
52 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
53 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
54 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
55 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
56 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
57 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
58 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
59 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
60 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
61 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
62 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
63 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
64 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
65 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
66 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
67 3300015683 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_F04 Metagenome Rhizosphere
68 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
69 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
70 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
76 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
77 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
78 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
79 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
81 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
82 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
96 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
99 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
100 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
101 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
102 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
103 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
104 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
105 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
106 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
107 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
108 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
109 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
110 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
111 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
112 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
113 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
114 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
115 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
116 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
117 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
118 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
119 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
120 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
121 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
122 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
123 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
124 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
125 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
126 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
127 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
128 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
129 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
130 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
131 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
132 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
133 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
134 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
135 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
136 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
137 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
138 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
139 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
140 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
145 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
146 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
148 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
149 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
150 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
151 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
152 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
153 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
154 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
155 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
156 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
157 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
158 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
159 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
160 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
161 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
162 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
163 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
164 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
165 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
166 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
167 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
168 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
169 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
170 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
171 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
172 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
173 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
174 641522639 Methylobacterium sp. 4-46 Isolate Nodule
175 8016522445 Bradyrhizobium sp. LM6.9 Isolate Nodule
176 8016622563 Bradyrhizobium sp. LB13.1 Isolate Nodule
177 8019547302 Bradyrhizobium sp. LB1.3 Isolate Nodule
178 8054002106 Azospirillum lipoferum 59b Isolate Unclassified
179 8057529695 Bosea vestrisii A18/4-2 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 85.84
Metatranscriptomes 0
Isolates 14.16

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.45
Nodule 5.91
Rhizoplane 2.73
Rhizosphere 64.09
Stem 0
Stem Tuber 0
Unclassified 11.82

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000038 3300003187 Bacteria 180430
2 Ga0055538_1000024 3300003751 Bacteria 241526
3 Ga0055539_1000031 3300003752 Bacteria 241526
4 Ga0055533_1000041 3300003756 Bacteria 241526
5 Ga0055525_1000049 3300003759 Bacteria 241526
6 Ga0055526_1001283 3300003771 Bacteria 18020
7 Ga0055524_1000091 3300003775 Bacteria 113761
8 Ga0055524_1005055 3300003775 Bacteria 5967
9 Ga0055541_1000022 3300003841 Bacteria 241526
10 Ga0065165_1000359 3300005262 Bacteria 74914
11 Ga0065707_10084167 3300005295 Bacteria 7582
12 Ga0070689_100071925 3300005340 Bacteria 2703
13 Ga0070709_10005894 3300005434 Bacteria 6646
14 Ga0070714_100006577 3300005435 Bacteria 8992
15 Ga0070713_100028293 3300005436 Bacteria 4425
16 Ga0070710_10007343 3300005437 Bacteria 5333
17 Ga0070711_100056413 3300005439 Bacteria 2716
18 Ga0070681_10006123 3300005458 Bacteria 11677
19 Ga0070681_10059142 3300005458 Bacteria 3812
20 Ga0070699_100131313 3300005518 Bacteria 2208
21 Ga0070679_100036077 3300005530 Bacteria 4906
22 Ga0070684_100000744 3300005535 Bacteria 22553
23 Ga0068853_100152008 3300005539 Bacteria 2084
24 Ga0070696_100001757 3300005546 Bacteria 14212
25 Ga0068855_100002312 3300005563 Bacteria 23567
26 Ga0068855_100143295 3300005563 Bacteria 2722
27 Ga0068857_100043788 3300005577 Bacteria 3970
28 Ga0068863_100038827 3300005841 Bacteria 4530
29 Ga0068860_100060803 3300005843 Bacteria 3590
30 Ga0081455_10001410 3300005937 Bacteria 29737
31 Ga0081455_10004499 3300005937 Bacteria 15590
32 Ga0081455_10014604 3300005937 Bacteria 7685
33 Ga0081455_10016377 3300005937 Bacteria 7160
34 Ga0081455_10038333 3300005937 Bacteria 4244
35 Ga0081538_10005912 3300005981 Bacteria 10903
36 Ga0081540_1000015 3300005983 Bacteria 178704
37 Ga0081540_1007787 3300005983 Bacteria 7582
38 Ga0081539_10014380 3300005985 Bacteria 5859
39 Ga0070717_10015501 3300006028 Bacteria 5890
40 Ga0070712_100011934 3300006175 Bacteria 5521
41 Ga0070712_100078208 3300006175 Bacteria 2387
42 Ga0075369_10000211 3300006186 Bacteria 17165
43 Ga0105250_10000005 3300009092 Bacteria 422580
44 Ga0105240_10002551 3300009093 Bacteria 29190
45 Ga0105240_10112145 3300009093 Bacteria 3297
46 Ga0111539_10000192 3300009094 Bacteria 71356
47 Ga0105249_10029151 3300009553 Bacteria 4984
48 Ga0099796_10000839 3300010159 Bacteria 5621
49 Ga0171462_1056 3300013250 Bacteria 29732
50 Ga0157379_10003328 3300014968 Bacteria 13618
51 Ga0183362_10001 3300015683 Bacteria 2046624
52 Ga0213872_10000726 3300021361 Bacteria 24593
53 Ga0213872_10010029 3300021361 Bacteria 4520
54 Ga0213872_10012953 3300021361 Bacteria 3911
55 Ga0213872_10013351 3300021361 Bacteria 3850
56 Ga0213872_10031247 3300021361 Bacteria 2440
57 Ga0213875_10000580 3300021388 Bacteria 29736
58 Ga0209784_100018 3300025224 Bacteria 456816
59 Ga0209566_100016 3300025225 Bacteria 456824
60 Ga0209674_100030 3300025226 Bacteria 456824
61 Ga0209563_100034 3300025230 Bacteria 456824
62 Ga0209677_100019 3300025253 Bacteria 456824
63 Ga0209130_1000062 3300025284 Bacteria 200367
64 Ga0209675_1000417 3300025291 Bacteria 34839
65 Ga0209675_1009797 3300025291 Bacteria 3345
66 Ga0209025_1000014 3300025294 Bacteria 865448
67 Ga0209025_1005025 3300025294 Bacteria 11044
68 Ga0209564_1000105 3300025295 Bacteria 218124
69 Ga0209564_1000150 3300025295 Bacteria 170318
70 Ga0209050_1009241 3300025298 Bacteria 5084
71 Ga0209256_1000108 3300025299 Bacteria 185884
72 Ga0209256_1000530 3300025299 Bacteria 55312
73 Ga0207426_1010196 3300025302 Bacteria 3665
74 Ga0207696_1000276 3300025711 Bacteria 60824
75 Ga0207692_10025979 3300025898 Bacteria 2743
76 Ga0207699_10012953 3300025906 Bacteria 4252
77 Ga0207684_10078438 3300025910 Bacteria 2809
78 Ga0207707_10005478 3300025912 Bacteria 11095
79 Ga0207693_10017414 3300025915 Bacteria 5732
80 Ga0207693_10047019 3300025915 Bacteria 3391
81 Ga0207693_10049854 3300025915 Bacteria 3288
82 Ga0207663_10019356 3300025916 Bacteria 3833
83 Ga0207657_10100599 3300025919 Bacteria 2400
84 Ga0207700_10007439 3300025928 Bacteria 6692
85 Ga0207670_10012145 3300025936 Bacteria 5027
86 Ga0207712_10067093 3300025961 Bacteria 2566
87 Ga0207641_10038472 3300026088 Bacteria 3999
88 Ga0207675_100042553 3300026118 Bacteria 4241
89 Ga0207428_10000071 3300027907 Bacteria 144369
90 Ga0268266_10017966 3300028379 Bacteria 6030
91 Ga0268264_10072809 3300028381 Bacteria 2914
92 Ga0265337_1001192 3300028556 Bacteria 13219
93 Ga0316183_1015378 3300030742 Bacteria 9501
94 Ga0265325_10000744 3300031241 Bacteria 23548
95 Ga0265339_10002592 3300031249 Bacteria 12901
96 Ga0265339_10003201 3300031249 Bacteria 11494
97 Ga0265331_10002595 3300031250 Bacteria 12153
98 Ga0265327_10001382 3300031251 Bacteria 31023
99 Ga0265313_10013880 3300031595 Bacteria 4799
100 Ga0307508_10000005 3300031616 Bacteria 286511
101 Ga0307514_10011894 3300031649 Bacteria 7242
102 Ga0265314_10021567 3300031711 Bacteria 4948
103 Ga0265342_10000011 3300031712 Bacteria 208435
104 Ga0373924_0011235 3300035410 Bacteria 3321
105 Ga0373927_0033431 3300035695 Bacteria 3349
106 Ga0373937_0002904 3300036401 Bacteria 14315
107 Ga0373937_0010837 3300036401 Bacteria 7980
108 Ga0395899_0103752 3300037312 Bacteria 2050
109 Ga0395900_0006691 3300037418 Bacteria 11976
110 Ga0395905_0088808 3300037471 Bacteria 2897
111 Ga0436364_0380413 3300037853 Bacteria 67254
112 Ga0436364_0383377 3300037853 Bacteria 7260
113 Ga0436364_0580114 3300037853 Bacteria 12001
114 Ga0436364_1396310 3300037853 Bacteria 9105
115 Ga0395901_0003649 3300038443 Bacteria 15519
116 Ga0395901_0013967 3300038443 Bacteria 8172
117 Ga0436365_0053006 3300039437 Bacteria 19049
118 Ga0436361_0260445 3300039447 Bacteria 2743
119 Ga0436361_0400618 3300039447 Bacteria 29489
120 Ga0436361_0437880 3300039447 Bacteria 10056
121 Ga0436361_0873357 3300039447 Bacteria 40424
122 Ga0436361_1102869 3300039447 Bacteria 7803
123 Ga0436363_0929221 3300039450 Bacteria 3669
124 Ga0439462_0012466 3300042015 Bacteria 2172
125 Ga0450911_000400 3300042115 Bacteria 14320
126 Ga0450893_0003413 3300042532 Bacteria 2502
127 Ga0453684_0000725 3300044712 Bacteria 116265
128 Ga0453684_0031157 3300044712 Bacteria 7503
129 Ga0466959_0044562 3300045049 Bacteria 3269
130 Ga0451576_0000842 3300045051 Bacteria 59694
131 Ga0451576_0020562 3300045051 Bacteria 7184
132 Ga0466958_0000250 3300045836 Bacteria 20747
133 Ga0495672_0020067 3300047320 Bacteria 4390
134 Ga0495680_0020335 3300047322 Bacteria 5587
135 Ga0495602_0076740 3300048088 Bacteria 2830
136 Ga0496100_0002416 3300048903 Bacteria 9463
137 Ga0496101_0040311 3300048904 Bacteria 3326
138 Ga0496102_0153428 3300048905 Bacteria 2165
139 Ga0496104_0024135 3300048907 Bacteria 5595
140 Ga0496105_0007788 3300048908 Bacteria 8313
141 Ga0496115_0008243 3300048918 Bacteria 7701
142 Ga0496117_0017181 3300048920 Bacteria 6054
143 Ga0496118_0006849 3300048921 Bacteria 12363
144 Ga0496123_0013032 3300048926 Bacteria 7018
145 Ga0496126_0074954 3300048929 Bacteria 3004
146 Ga0501032_0014224 3300049569 Bacteria 5636
147 Ga0501034_0035738 3300049571 Bacteria 5036
148 Ga0501037_0043628 3300049573 Bacteria 3295
149 Ga0501038_0016674 3300049574 Bacteria 6657
150 Ga0501039_0092175 3300049575 Bacteria 2361
151 Ga0501040_0010926 3300049576 Bacteria 5937
152 Ga0501041_0012861 3300049577 Bacteria 4957
153 Ga0501042_0006138 3300049578 Bacteria 7788
154 Ga0501042_0045981 3300049578 Bacteria 3111
155 Ga0501048_0008350 3300049582 Bacteria 7828
156 Ga0501048_0020449 3300049582 Bacteria 4850
157 Ga0501068_0013848 3300049584 Bacteria 4597
158 Ga0501068_0056725 3300049584 Bacteria 2374
159 Ga0501069_0000265 3300049585 Bacteria 23714
160 Ga0501070_0006003 3300049586 Bacteria 10343
161 Ga0501071_0001558 3300049587 Bacteria 13396
162 Ga0501072_0006945 3300049588 Bacteria 8594
163 Ga0501072_0012189 3300049588 Bacteria 6569
164 Ga0501073_0002257 3300049589 Bacteria 14427
165 Ga0501074_0017003 3300049590 Bacteria 5275
166 Ga0501075_0000247 3300049591 Bacteria 29087
167 Ga0501076_0004064 3300049592 Bacteria 10346
168 Ga0501079_0005673 3300049741 Bacteria 9319
169 Ga0501079_0037244 3300049741 Bacteria 3748
170 Ga0501080_0001803 3300049742 Bacteria 18355
171 Ga0501044_0010594 3300049823 Bacteria 10001
172 Ga0501045_0000502 3300049824 Bacteria 24311
173 Ga0501045_0013117 3300049824 Bacteria 5846
174 nmdc:mga03683_4339_c1 3300050489 Bacteria 4691
175 nmdc:mga08y16_32_c1 3300050511 Bacteria 179220
176 Ga0500650_0000121 3300053098 Bacteria 21143
177 Ga0500554_002086 3300053102 Bacteria 3872
178 Ga0500607_031039 3300053121 Bacteria 2942
179 Ga0500603_004129 3300053150 Bacteria 3107
180 Ga0500637_0004633 3300053178 Bacteria 6558
181 Ga0500645_018045 3300053730 Bacteria 2206
182 Ga0501084_0015425 3300054114 Bacteria 6335
183 Ga0501084_0030470 3300054114 Bacteria 4511
184 Ga0501082_0005960 3300060353 Bacteria 10572
185 Ga0501082_0007733 3300060353 Bacteria 9278
186 Ga0466962_0020333 3300061719 Bacteria 3190
187 Ga0530510_0004108 3300061734 Bacteria 10047
188 Ga0530510_0041437 3300061734 Bacteria 3324

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300037312 Ga0395899_0103752 Ga0395899_0103752_31_1683 457
2 3300042015 Ga0439462_0012466 Ga0439462_0012466_17_1639 470
3 3300049575 Ga0501039_0092175 Ga0501039_0092175_16_1668 484
4 iso_pu_bacteria 8019547302 8019550598 500
5 iso_pu_bacteria 8016522445 8016526571 503
6 3300048929 Ga0496126_0074954 Ga0496126_0074954_1212_2981 521
7 3300021361 Ga0213872_10013351 Ga0213872_100133513 557
8 3300039447 Ga0436361_1102869 Ga0436361_1102869_3845_5809 557
9 3300045836 Ga0466958_0000250 Ga0466958_0000250_11345_13309 560
10 3300061719 Ga0466962_0020333 Ga0466962_0020333_617_2581 560
11 3300037471 Ga0395905_0088808 Ga0395905_0088808_11_1894 561
12 3300039447 Ga0436361_0437880 Ga0436361_0437880_8048_9982 561
13 3300005546 Ga0070696_100001757 Ga0070696_1000017573 566
14 3300005563 Ga0068855_100143295 Ga0068855_1001432952 566
15 3300049741 Ga0501079_0037244 Ga0501079_0037244_1836_3734 566
16 3300005458 Ga0070681_10006123 Ga0070681_1000612310 568
17 3300005530 Ga0070679_100036077 Ga0070679_1000360773 568
18 3300005563 Ga0068855_100002312 Ga0068855_10000231219 568
19 3300009093 Ga0105240_10002551 Ga0105240_1000255110 568
20 3300045049 Ga0466959_0044562 Ga0466959_0044562_981_2930 569
21 3300005340 Ga0070689_100071925 Ga0070689_1000719252 572
22 3300037418 Ga0395900_0006691 Ga0395900_0006691_271_2256 572
23 3300005983 Ga0081540_1000015 Ga0081540_100001535 573
24 3300021361 Ga0213872_10000726 Ga0213872_1000072616 573
25 3300021361 Ga0213872_10031247 Ga0213872_100312472 573
26 3300025915 Ga0207693_10049854 Ga0207693_100498542 573
27 3300039447 Ga0436361_0260445 Ga0436361_0260445_434_2401 573
28 3300021361 Ga0213872_10010029 Ga0213872_100100293 574
29 3300025919 Ga0207657_10100599 Ga0207657_101005992 575
30 3300003751 Ga0055538_1000024 Ga0055538_100002471 580
31 3300003752 Ga0055539_1000031 Ga0055539_100003171 580
32 3300003756 Ga0055533_1000041 Ga0055533_100004171 580
33 3300003759 Ga0055525_1000049 Ga0055525_100004971 580
34 3300003841 Ga0055541_1000022 Ga0055541_100002271 580
35 3300005983 Ga0081540_1007787 Ga0081540_10077875 580
36 3300039447 Ga0436361_0400618 Ga0436361_0400618_657_2606 580
37 3300021361 Ga0213872_10012953 Ga0213872_100129532 581
38 3300025224 Ga0209784_100018 Ga0209784_10001868 581
39 3300025225 Ga0209566_100016 Ga0209566_10001668 581
40 3300025226 Ga0209674_100030 Ga0209674_10003068 581
41 3300025230 Ga0209563_100034 Ga0209563_10003468 581
42 3300025253 Ga0209677_100019 Ga0209677_10001968 581
43 3300015683 Ga0183362_10001 Ga0183362_100011252 582
44 3300028556 Ga0265337_1001192 Ga0265337_10011925 582
45 3300031250 Ga0265331_10002595 Ga0265331_100025959 582
46 3300031711 Ga0265314_10021567 Ga0265314_100215673 582
47 3300005937 Ga0081455_10001410 Ga0081455_1000141025 583
48 3300031251 Ga0265327_10001382 Ga0265327_100013825 583
49 3300048908 Ga0496105_0007788 Ga0496105_0007788_3664_5634 583
50 3300048918 Ga0496115_0008243 Ga0496115_0008243_322_2292 583
51 3300048920 Ga0496117_0017181 Ga0496117_0017181_1632_3632 583
52 3300048921 Ga0496118_0006849 Ga0496118_0006849_8791_10791 583
53 3300031649 Ga0307514_10011894 Ga0307514_100118942 584
54 3300039447 Ga0436361_0873357 Ga0436361_0873357_8294_10258 584
55 3300005458 Ga0070681_10059142 Ga0070681_100591423 585
56 3300025912 Ga0207707_10005478 Ga0207707_1000547811 585
57 3300006028 Ga0070717_10015501 Ga0070717_100155015 586
58 3300006186 Ga0075369_10000211 Ga0075369_100002113 586
59 3300053102 Ga0500554_002086 Ga0500554_002086_332_2314 586
60 3300053150 Ga0500603_004129 Ga0500603_004129_752_2734 586
61 3300053178 Ga0500637_0004633 Ga0500637_0004633_4536_6518 586
62 3300042532 Ga0450893_0003413 Ga0450893_0003413_240_2213 588
63 3300025936 Ga0207670_10012145 Ga0207670_100121454 589
64 3300036401 Ga0373937_0010837 Ga0373937_0010837_3875_5842 589
65 3300053098 Ga0500650_0000121 Ga0500650_0000121_6858_8912 589
66 3300050489 nmdc:mga03683_4339_c1 nmdc:mga03683_4339_c1_1109_3109 590
67 3300005577 Ga0068857_100043788 Ga0068857_1000437882 592
68 3300038443 Ga0395901_0003649 Ga0395901_0003649_2420_4405 592
69 3300053730 Ga0500645_018045 Ga0500645_018045_196_2136 592
70 3300005937 Ga0081455_10038333 Ga0081455_100383333 593
71 3300005985 Ga0081539_10014380 Ga0081539_100143804 593
72 3300031595 Ga0265313_10013880 Ga0265313_100138802 593
73 3300037853 Ga0436364_0383377 Ga0436364_0383377_3107_5092 593
74 3300038443 Ga0395901_0013967 Ga0395901_0013967_4696_6714 593
75 3300044712 Ga0453684_0031157 Ga0453684_0031157_1936_3921 593
76 3300005937 Ga0081455_10014604 Ga0081455_100146042 594
77 3300025302 Ga0207426_1010196 Ga0207426_10101963 594
78 3300031249 Ga0265339_10003201 Ga0265339_1000320111 594
79 3300005937 Ga0081455_10016377 Ga0081455_100163773 595
80 3300009092 Ga0105250_10000005 Ga0105250_10000005294 595
81 3300037853 Ga0436364_0580114 Ga0436364_0580114_6574_8568 595
82 3300044712 Ga0453684_0000725 Ga0453684_0000725_52210_54201 595
83 3300045051 Ga0451576_0020562 Ga0451576_0020562_4259_6250 595
84 3300005434 Ga0070709_10005894 Ga0070709_100058943 596
85 3300005435 Ga0070714_100006577 Ga0070714_1000065772 596
86 3300005436 Ga0070713_100028293 Ga0070713_1000282932 596
87 3300005437 Ga0070710_10007343 Ga0070710_100073433 596
88 3300005439 Ga0070711_100056413 Ga0070711_1000564131 596
89 3300006175 Ga0070712_100011934 Ga0070712_1000119344 596
90 3300025711 Ga0207696_1000276 Ga0207696_100027645 596
91 3300025898 Ga0207692_10025979 Ga0207692_100259792 596
92 3300025906 Ga0207699_10012953 Ga0207699_100129532 596
93 3300025915 Ga0207693_10017414 Ga0207693_100174142 596
94 3300025916 Ga0207663_10019356 Ga0207663_100193562 596
95 3300025928 Ga0207700_10007439 Ga0207700_100074395 596
96 3300035410 Ga0373924_0011235 Ga0373924_0011235_1306_3276 596
97 3300035695 Ga0373927_0033431 Ga0373927_0033431_690_2720 596
98 3300049574 Ga0501038_0016674 Ga0501038_0016674_548_2536 596
99 3300049577 Ga0501041_0012861 Ga0501041_0012861_260_2248 596
100 3300049578 Ga0501042_0006138 Ga0501042_0006138_5419_7407 596
101 3300049582 Ga0501048_0008350 Ga0501048_0008350_1065_3053 596
102 3300049587 Ga0501071_0001558 Ga0501071_0001558_9992_11980 596
103 3300049588 Ga0501072_0012189 Ga0501072_0012189_3672_5660 596
104 3300049591 Ga0501075_0000247 Ga0501075_0000247_25878_27866 596
105 3300049742 Ga0501080_0001803 Ga0501080_0001803_2694_4682 596
106 3300049824 Ga0501045_0000502 Ga0501045_0000502_3673_5661 596
107 3300054114 Ga0501084_0015425 Ga0501084_0015425_2672_4660 596
108 3300060353 Ga0501082_0005960 Ga0501082_0005960_910_2898 596
109 3300061734 Ga0530510_0041437 Ga0530510_0041437_482_2470 596
110 3300049569 Ga0501032_0014224 Ga0501032_0014224_3230_5230 597
111 3300049584 Ga0501068_0013848 Ga0501068_0013848_1155_3155 597
112 3300049585 Ga0501069_0000265 Ga0501069_0000265_7311_9311 597
113 3300049586 Ga0501070_0006003 Ga0501070_0006003_6152_8152 597
114 3300049590 Ga0501074_0017003 Ga0501074_0017003_1499_3499 597
115 3300049823 Ga0501044_0010594 Ga0501044_0010594_7777_9777 597
116 3300060353 Ga0501082_0007733 Ga0501082_0007733_5628_7628 597
117 3300005535 Ga0070684_100000744 Ga0070684_10000074416 598
118 3300025915 Ga0207693_10047019 Ga0207693_100470192 598
119 3300005937 Ga0081455_10004499 Ga0081455_100044999 599
120 3300006175 Ga0070712_100078208 Ga0070712_1000782081 600
121 3300049589 Ga0501073_0002257 Ga0501073_0002257_2038_4053 600
122 3300049584 Ga0501068_0056725 Ga0501068_0056725_371_2353 601
123 3300025291 Ga0209675_1009797 Ga0209675_10097972 602
124 3300025294 Ga0209025_1005025 Ga0209025_10050254 602
125 3300030742 Ga0316183_1015378 Ga0316183_10153784 602
126 3300031241 Ga0265325_10000744 Ga0265325_1000074420 602
127 3300005539 Ga0068853_100152008 Ga0068853_1001520081 603
128 3300009093 Ga0105240_10112145 Ga0105240_101121451 603
129 3300036401 Ga0373937_0002904 Ga0373937_0002904_4288_6306 603
130 3300047322 Ga0495680_0020335 Ga0495680_0020335_461_2392 603
131 3300048904 Ga0496101_0040311 Ga0496101_0040311_37_1992 603
132 3300049571 Ga0501034_0035738 Ga0501034_0035738_1015_3003 603
133 3300028379 Ga0268266_10017966 Ga0268266_100179663 604
134 3300049573 Ga0501037_0043628 Ga0501037_0043628_1171_3162 604
135 3300049576 Ga0501040_0010926 Ga0501040_0010926_3549_5540 604
136 3300049578 Ga0501042_0045981 Ga0501042_0045981_856_2847 604
137 3300049582 Ga0501048_0020449 Ga0501048_0020449_159_2150 604
138 3300049588 Ga0501072_0006945 Ga0501072_0006945_3901_5892 604
139 3300049592 Ga0501076_0004064 Ga0501076_0004064_249_2240 604
140 3300049741 Ga0501079_0005673 Ga0501079_0005673_2753_4744 604
141 3300049824 Ga0501045_0013117 Ga0501045_0013117_2501_4492 604
142 3300053121 Ga0500607_031039 Ga0500607_031039_510_2477 604
143 3300054114 Ga0501084_0030470 Ga0501084_0030470_2331_4322 604
144 3300061734 Ga0530510_0004108 Ga0530510_0004108_3611_5602 604
145 iso_pu_bacteria 2738541307 2738883259 604
146 iso_pu_bacteria 2791355199 2793077457 604
147 3300025298 Ga0209050_1009241 Ga0209050_10092413 605
148 3300042115 Ga0450911_000400 Ga0450911_000400_3265_5229 605
149 iso_pu_bacteria 2738543013 2739251259 605
150 3300009094 Ga0111539_10000192 Ga0111539_1000019261 607
151 3300031616 Ga0307508_10000005 Ga0307508_10000005197 609
152 iso_pu_bacteria 2876808645 2876818239 609
153 iso_pu_bacteria 2879110137 2879111714 609
154 iso_pu_bacteria 2904666416 2904672217 609
155 iso_pu_bacteria 2935769743 2935772748 609
156 iso_pu_bacteria 2935785616 2935787343 609
157 iso_pu_bacteria 2935793552 2935795869 609
158 iso_pu_bacteria 8016622563 8016623578 609
159 3300005841 Ga0068863_100038827 Ga0068863_1000388272 610
160 3300005843 Ga0068860_100060803 Ga0068860_1000608032 610
161 3300009553 Ga0105249_10029151 Ga0105249_100291514 610
162 3300025961 Ga0207712_10067093 Ga0207712_100670932 610
163 3300026088 Ga0207641_10038472 Ga0207641_100384722 610
164 3300028381 Ga0268264_10072809 Ga0268264_100728092 610
165 3300048903 Ga0496100_0002416 Ga0496100_0002416_5697_7700 610
166 iso_pu_bacteria 2545555834 2545677934 610
167 iso_pu_bacteria 641522639 641642542 610
168 iso_pu_bacteria 2945972063 2945972078 611
169 3300050511 nmdc:mga08y16_32_c1 nmdc:mga08y16_32_c1_64587_66587 612
170 3300010159 Ga0099796_10000839 Ga0099796_100008392 613
171 iso_pu_bacteria 3003665799 3003669566 613
172 3300048905 Ga0496102_0153428 Ga0496102_0153428_162_2114 614
173 3300048907 Ga0496104_0024135 Ga0496104_0024135_3007_4959 614
174 3300013250 Ga0171462_1056 Ga0171462_10565 615
175 iso_pu_bacteria 2894772417 2894777340 615
176 3300031249 Ga0265339_10002592 Ga0265339_100025922 616
177 3300031712 Ga0265342_10000011 Ga0265342_10000011153 616
178 3300048926 Ga0496123_0013032 Ga0496123_0013032_4037_6022 616
179 3300027907 Ga0207428_10000071 Ga0207428_1000007193 617
180 3300048088 Ga0495602_0076740 Ga0495602_0076740_593_2578 617
181 iso_pu_bacteria 2835312727 2835317305 617
182 iso_pu_bacteria 2884298095 2884300306 617
183 iso_pu_bacteria 2511231221 2512035912 618
184 iso_pu_bacteria 2846952575 2846957380 618
185 iso_pu_bacteria 2848858292 2848863295 618
186 iso_pu_bacteria 2897803580 2897807204 618
187 iso_pu_bacteria 8054002106 8054002630 618
188 3300021388 Ga0213875_10000580 Ga0213875_1000058021 619
189 3300037853 Ga0436364_1396310 Ga0436364_1396310_2959_4956 619
190 3300005981 Ga0081538_10005912 Ga0081538_1000591210 620
191 3300045051 Ga0451576_0000842 Ga0451576_0000842_22321_24321 620
192 iso_pu_bacteria 2513237087 2513590607 620
193 iso_pu_bacteria 2917554339 2917556048 620
194 3300005295 Ga0065707_10084167 Ga0065707_100841672 621
195 3300026118 Ga0207675_100042553 Ga0207675_1000425532 621
196 3300039450 Ga0436363_0929221 Ga0436363_0929221_1023_3029 622
197 3300047320 Ga0495672_0020067 Ga0495672_0020067_2037_4034 622
198 3300003775 Ga0055524_1005055 Ga0055524_10050556 623
199 3300014968 Ga0157379_10003328 Ga0157379_100033282 623
200 3300025299 Ga0209256_1000530 Ga0209256_100053036 623
201 3300039437 Ga0436365_0053006 Ga0436365_0053006_15318_17339 623
202 iso_pu_bacteria 2597490356 2599103696 623
203 3300025910 Ga0207684_10078438 Ga0207684_100784381 624
204 3300037853 Ga0436364_0380413 Ga0436364_0380413_64440_66476 624
205 iso_pu_bacteria 2828305725 2828308510 626
206 3300005518 Ga0070699_100131313 Ga0070699_1001313131 628
207 iso_pu_bacteria 2643221734 2644735471 635
208 iso_pu_bacteria 2851182111 2851184524 635
209 iso_pu_bacteria 2917699015 2917699327 635
210 iso_pu_bacteria 8057529695 8057530355 635
211 3300003187 JGI25151J46595_10000038 JGI25151J46595_1000003871 639
212 3300003771 Ga0055526_1001283 Ga0055526_10012835 639
213 3300003775 Ga0055524_1000091 Ga0055524_10000918 639
214 3300005262 Ga0065165_1000359 Ga0065165_100035952 639
215 3300025284 Ga0209130_1000062 Ga0209130_1000062175 639
216 3300025291 Ga0209675_1000417 Ga0209675_100041713 639
217 3300025294 Ga0209025_1000014 Ga0209025_100001464 639
218 3300025295 Ga0209564_1000105 Ga0209564_100010547 639
219 3300025295 Ga0209564_1000150 Ga0209564_1000150137 639
220 3300025299 Ga0209256_1000108 Ga0209256_1000108137 639

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00289

Biotin_carb_N

Biotin carboxylase, N-terminal domain

39

148

0.99

PF02785

Biotin_carb_C

Biotin carboxylase C-terminal domain

373

480

0.99

PF02786

CPSase_L_D2

Carbamoyl-phosphate synthase L chain, ATP binding domain

153

361

0.98

PF00364

Biotin_lipoyl

Biotin-requiring enzyme

618

685

0.96

PF02222

ATP-grasp

ATP-grasp domain

161

331

0.84

PF07478

Dala_Dala_lig_C

D-ala D-ala ligase C-terminus

160

330

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ouu-assembly1.cif.gz_A crystal structure of biotin carboxylase-beta-gamma-atp complex from campylobacter jejuni 0.9746 7 454
2vpq-assembly1.cif.gz_A crystal structure of biotin carboxylase from s. aureus complexed with amppnp 0.973 9 458
3g8d-assembly1.cif.gz_A crystal structure of the biotin carboxylase subunit, e296a mutant, of acetyl-coa carboxylase from escherichia coli 0.9693 7 453
5mlk-assembly1.cif.gz_B biotin dependent carboxylase acca3 dimer from mycobacterium tuberculosis (rv3285) 0.9687 7 452
2vpq-assembly1.cif.gz_A crystal structure of biotin carboxylase from s. aureus complexed with amppnp 0.9666 9 458
ID Description Score Start End Superfamily
af_Q9V9T5_626_691_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 1.005 572 635 2.40.50.100
af_Q553S7_647_713_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 1 572 635 2.40.50.100
af_Q91ZA3_659_724_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.9958 574 638 2.40.50.100
af_Q54KE6_162_230_3.30.1490.20 Alpha Beta;2-Layer Sandwich;Dna Ligase; domain 1;ATP-grasp fold, A domain 0.9946 139 207 3.30.1490.20
af_Q54KE6_633_699_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.9864 572 637 2.40.50.100
ID Description Score Start End GO Terms
AF-A0A323V7T1-F1-model_v4 biotin carboxylase (EC 6.3.4.14) 0.9976 7 85 GO:0005524
GO:0016874
AF-A0A7S0P767-F1-model_v4 Biotin carboxylation domain-containing protein 0.9907 7 87 GO:0005524
GO:0016874
AF-A0A4P5V8G0-F1-model_v4 biotin carboxylase (EC 6.3.4.14) 0.9864 341 456 GO:0005524
GO:0016874
AF-A0A520FYV7-F1-model_v4 biotin carboxylase (EC 6.3.4.14) 0.9862 316 456 GO:0003989
GO:0005524
AF-A0A641UVC2-F1-model_v4 deleted 0.9847 315 459

Feature Viewer

pLDDT pTM Quality
85.42 0.84 High
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Predicted Structure (AlphaFold2)

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