F330500

General Info

Members Datasets Scaffolds Average Seq Length
218 155 207 205

Family's Representative Sequence

Representative Sequence 3300053156|Ga0500622_0010885|Ga0500622_0010885_3947_4627
Length 226
Sequence MNEVILNLTSGKGPDECRWVVARLASAFAREAEAQGLRCELLERFDESPSSLLMRVTGSEAHAFTSRRQGTVQWIGDSPFRPDHKRRNWFVGVAIIPEPEAIGDLREEDIDYQAMRASGPGGQHVNKTDSAVRATHRPSGLVATAQEQRSQHANRKLARLKLAMMLEEKREQSFSGARQSQWALHQELERGNPVRVYVGERFKLKSGDQRGGEPGEILHFARSVAR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2643221560 Sphingopyxis sp. Root1497 Isolate Unclassified
3 2643221584 Caulobacter sp. Root656 Isolate Unclassified
4 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
5 2739367664 Novosphingobium sp. GV002 Isolate Unclassified
6 2739367865 Novosphingobium sp. GV013 Isolate Unclassified
7 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
8 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
9 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified
10 2935353572 Pseudomonas protegens TECH19 Isolate Unclassified
11 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
12 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
13 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
14 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
15 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
16 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
17 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
18 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
19 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
20 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
21 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
22 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
23 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
24 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
27 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
28 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
31 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
32 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
33 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
34 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
35 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
36 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
38 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
39 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
41 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
42 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
43 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
44 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
45 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
46 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
47 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
48 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
51 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
52 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
53 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
57 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
59 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
77 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
78 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
79 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
80 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
81 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
82 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
83 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
84 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
85 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
86 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
87 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
88 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
89 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
90 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
91 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
92 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
93 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
94 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
95 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
96 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
97 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
98 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
99 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
100 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
101 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
102 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
103 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
104 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
105 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
106 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
107 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
108 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
109 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
110 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
111 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
112 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
113 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
114 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
115 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
116 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
117 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
118 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
119 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
120 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
121 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
122 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
123 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
124 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
125 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
126 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
127 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
128 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
129 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
130 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
131 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
132 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
133 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
134 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
135 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
136 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
137 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
138 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
139 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
140 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
141 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
142 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
143 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
144 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
145 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
146 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
147 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
148 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
149 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
150 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
151 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
152 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
153 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
154 8019769354 Pseudomonas sp. MSSRFD41 Isolate Rhizosphere
155 8057798959 Pseudomonas piscis BW16M1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.95
Metatranscriptomes 0
Isolates 5.05

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 20.64
Nodule 0
Rhizoplane 2.29
Rhizosphere 61.93
Stem 0
Stem Tuber 0
Unclassified 15.14

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1467723 2162886007 Bacteria 2737
2 JGI24740J21852_10009800 3300001979 Bacteria 3728
3 JGI24739J22299_10005553 3300001989 Bacteria 4780
4 JGI24735J21928_10006962 3300002067 Bacteria 3698
5 JGI25153J46596_10000261 3300003215 Bacteria 42248
6 JGI25153J46596_10043013 3300003215 Bacteria 1373
7 rootH1_10140126 3300003316 Bacteria 1163
8 rootH2_10050112 3300003320 Bacteria 4061
9 rootH2_10079839 3300003320 Bacteria 4981
10 rootL2_10253715 3300003322 Bacteria 1931
11 rootH1_10006076 3300003323 Bacteria 21487
12 rootH1_10070754 3300003323 Bacteria 1398
13 Ga0055530_10006019 3300003791 Bacteria 5557
14 Ga0055530_10010877 3300003791 Bacteria 3316
15 Ga0055530_10038813 3300003791 Bacteria 1181
16 Ga0055540_1001340 3300003792 Bacteria 14839
17 Ga0055531_10008960 3300003794 Bacteria 5181
18 Ga0055531_10008970 3300003794 Bacteria 5177
19 Ga0065714_10119753 3300005288 Bacteria 1322
20 Ga0065704_10000361 3300005289 Bacteria 27784
21 Ga0070658_10248344 3300005327 Bacteria 1509
22 Ga0068853_100157911 3300005539 Bacteria 2044
23 Ga0070686_100124056 3300005544 Bacteria 1777
24 Ga0068855_100022422 3300005563 Bacteria 7569
25 Ga0068855_100128165 3300005563 Bacteria 2900
26 Ga0068855_100344992 3300005563 Bacteria 1641
27 Ga0068857_100573360 3300005577 Bacteria 1065
28 Ga0068852_100001483 3300005616 Bacteria 15865
29 Ga0068852_100299582 3300005616 Bacteria 1556
30 Ga0068859_100008061 3300005617 Bacteria 10679
31 Ga0068864_100465472 3300005618 Bacteria 1211
32 Ga0068851_10002249 3300005834 Bacteria 8482
33 Ga0081539_10087352 3300005985 Bacteria 1620
34 Ga0070716_100278452 3300006173 Bacteria 1153
35 Ga0075366_10000951 3300006195 Bacteria 14104
36 Ga0097621_100521871 3300006237 Bacteria 1078
37 Ga0075370_10090477 3300006353 Bacteria 1765
38 Ga0075429_100404307 3300006880 Bacteria 1196
39 Ga0097620_100008061 3300006931 Bacteria 10679
40 Ga0105240_10121435 3300009093 Bacteria 3145
41 Ga0105243_10000012 3300009148 Bacteria 300885
42 Ga0105243_10109007 3300009148 Bacteria 2312
43 Ga0105248_10033656 3300009177 Bacteria 5726
44 Ga0105237_10001576 3300009545 Bacteria 29681
45 Ga0105237_10010344 3300009545 Bacteria 9935
46 Ga0105249_10007037 3300009553 Bacteria 9815
47 Ga0105249_10107198 3300009553 Bacteria 2637
48 Ga0105239_10005247 3300010375 Bacteria 15243
49 Ga0105239_10384228 3300010375 Bacteria 1587
50 Ga0157373_10342772 3300013100 Bacteria 1065
51 Ga0157371_10002004 3300013102 Bacteria 20138
52 Ga0157371_10035459 3300013102 Bacteria 3574
53 Ga0157371_10164530 3300013102 Bacteria 1584
54 Ga0157369_10052993 3300013105 Bacteria 4387
55 Ga0157372_10033373 3300013307 Bacteria 5653
56 Ga0163161_10013871 3300017792 Bacteria 5614
57 Ga0207425_1000026 3300025245 Bacteria 301303
58 Ga0209129_1009627 3300025258 Bacteria 2515
59 Ga0209565_1000099 3300025263 Bacteria 131080
60 Ga0209673_1005961 3300025273 Bacteria 6002
61 Ga0209676_1005775 3300025292 Bacteria 6333
62 Ga0209676_1009587 3300025292 Bacteria 4158
63 Ga0209676_1015818 3300025292 Bacteria 2757
64 Ga0209676_1050229 3300025292 Bacteria 1102
65 Ga0209025_1000876 3300025294 Bacteria 47312
66 Ga0209025_1042589 3300025294 Bacteria 1927
67 Ga0209564_1001189 3300025295 Bacteria 29952
68 Ga0209564_1001518 3300025295 Bacteria 23130
69 Ga0209758_1000004 3300025297 Bacteria 1375322
70 Ga0209758_1000200 3300025297 Bacteria 132890
71 Ga0209758_1051973 3300025297 Bacteria 1422
72 Ga0209050_1000001 3300025298 Bacteria 3563507
73 Ga0209050_1007068 3300025298 Bacteria 6434
74 Ga0209050_1022665 3300025298 Bacteria 2243
75 Ga0209051_1002171 3300025303 Bacteria 14542
76 Ga0209051_1013346 3300025303 Bacteria 3916
77 Ga0209257_1000886 3300025304 Bacteria 42023
78 Ga0209257_1000904 3300025304 Bacteria 41554
79 Ga0209257_1008248 3300025304 Bacteria 5995
80 Ga0207656_10009038 3300025321 Bacteria 3693
81 Ga0207647_10003195 3300025904 Bacteria 12290
82 Ga0207705_10188197 3300025909 Bacteria 1560
83 Ga0207695_10352234 3300025913 Bacteria 1359
84 Ga0207695_10363888 3300025913 Bacteria 1333
85 Ga0207671_10001560 3300025914 Bacteria 26209
86 Ga0207671_10002524 3300025914 Bacteria 19503
87 Ga0207706_10030888 3300025933 Bacteria 4776
88 Ga0207709_10000006 3300025935 Bacteria 800946
89 Ga0207711_10018879 3300025941 Bacteria 5733
90 Ga0207667_10004075 3300025949 Bacteria 17955
91 Ga0207667_10096522 3300025949 Bacteria 3051
92 Ga0207667_10552538 3300025949 Bacteria 1164
93 Ga0207712_10049182 3300025961 Bacteria 2936
94 Ga0207639_10010889 3300026041 Bacteria 6307
95 Ga0207676_10417073 3300026095 Bacteria 1258
96 Ga0207674_10061770 3300026116 Bacteria 3785
97 Ga0207698_10000865 3300026142 Bacteria 17601
98 Ga0307515_10000077 3300028794 Bacteria 228162
99 Ga0307515_10004178 3300028794 Bacteria 30048
100 Ga0265327_10153750 3300031251 Bacteria 1067
101 Ga0307408_100002142 3300031548 Bacteria 14142
102 Ga0307408_100029392 3300031548 Bacteria 3808
103 Ga0265314_10004847 3300031711 Bacteria 12304
104 Ga0307405_10075078 3300031731 Bacteria 2188
105 Ga0307406_10046061 3300031901 Bacteria 2742
106 Ga0307412_10007667 3300031911 Bacteria 6130
107 Ga0307416_100305959 3300032002 Bacteria 1583
108 Ga0307414_10090637 3300032004 Bacteria 2270
109 Ga0307507_10000097 3300033179 Bacteria 139761
110 Ga0373939_0124234 3300035114 Bacteria 914
111 Ga0373927_0031458 3300035695 Unclassified 3458
112 Ga0373925_0004545 3300037068 Bacteria 10480
113 Ga0395905_0000192 3300037471 Bacteria 97111
114 Ga0395905_0134379 3300037471 Bacteria 2327
115 Ga0395901_1084529 3300038443 Bacteria 772
116 Ga0237819_00436 3300038705 Bacteria 14308
117 Ga0439461_0052501 3300041410 Bacteria 907
118 Ga0466961_0081601 3300044693 Bacteria 2046
119 Ga0466961_0103493 3300044693 Bacteria 1793
120 Ga0453684_0011666 3300044712 Bacteria 14663
121 Ga0453684_0012979 3300044712 Bacteria 13628
122 Ga0453684_0013412 3300044712 Bacteria 13311
123 Ga0451576_0000002 3300045051 Bacteria 1670975
124 Ga0466958_0078658 3300045836 Bacteria 2027
125 Ga0495627_000681 3300046453 Bacteria 26157
126 Ga0495638_0000011 3300046460 Bacteria 442453
127 Ga0495638_0003139 3300046460 Bacteria 13080
128 Ga0495638_0063850 3300046460 Bacteria 2269
129 Ga0495650_0001261 3300046471 Bacteria 26122
130 Ga0495650_0109863 3300046471 Bacteria 1025
131 Ga0495585_0000235 3300046492 Bacteria 57308
132 Ga0495607_0180042 3300046501 Bacteria 1060
133 Ga0495583_0001457 3300046506 Bacteria 23902
134 Ga0495583_0165644 3300046506 Bacteria 910
135 Ga0495606_0000497 3300046507 Bacteria 64227
136 Ga0495606_0025698 3300046507 Bacteria 4211
137 Ga0495616_0000013 3300046513 Bacteria 202334
138 Ga0495620_0010517 3300046515 Bacteria 4878
139 Ga0495628_0176156 3300046516 Bacteria 1620
140 Ga0495631_0100623 3300046518 Bacteria 1244
141 Ga0495632_0080902 3300046519 Bacteria 1549
142 Ga0495643_0001399 3300046522 Bacteria 22471
143 Ga0495648_0000036 3300046524 Bacteria 195997
144 Ga0495648_0035054 3300046524 Bacteria 3257
145 Ga0495609_0021017 3300046538 Bacteria 3012
146 Ga0495622_0071825 3300046557 Bacteria 1597
147 Ga0495633_0000361 3300046558 Bacteria 48960
148 Ga0495633_0017357 3300046558 Bacteria 3683
149 Ga0495668_0000058 3300046616 Bacteria 195501
150 Ga0495668_0419600 3300046616 Bacteria 736
151 Ga0495625_0000641 3300046660 Bacteria 50345
152 Ga0495625_0001098 3300046660 Bacteria 35115
153 Ga0495625_0007675 3300046660 Bacteria 9349
154 Ga0495625_0027057 3300046660 Bacteria 4323
155 Ga0495625_0084052 3300046660 Bacteria 2211
156 Ga0495625_0321685 3300046660 Bacteria 985
157 Ga0495658_0012925 3300046683 Bacteria 4241
158 Ga0495669_0000047 3300046684 Bacteria 82672
159 Ga0495670_0000024 3300046691 Bacteria 91893
160 Ga0495671_0000054 3300046692 Bacteria 115885
161 Ga0495671_0333657 3300046692 Bacteria 728
162 Ga0495660_0000424 3300046810 Bacteria 35801
163 Ga0495660_0017048 3300046810 Bacteria 4182
164 Ga0495683_0034692 3300047323 Bacteria 2565
165 Ga0495673_0000158 3300047469 Bacteria 116122
166 Ga0495681_0000663 3300047470 Bacteria 26140
167 Ga0495686_0000121 3300047472 Bacteria 164238
168 Ga0495686_0046325 3300047472 Bacteria 2749
169 Ga0495614_0046483 3300048089 Bacteria 1861
170 Ga0495615_0000019 3300048090 Bacteria 54462
171 Ga0496101_0082581 3300048904 Bacteria 2378
172 Ga0496101_0352570 3300048904 Bacteria 1157
173 Ga0496106_0051045 3300048909 Bacteria 3118
174 Ga0496107_0000019 3300048910 Bacteria 150224
175 Ga0496110_0019647 3300048913 Bacteria 5690
176 Ga0496116_0000093 3300048919 Bacteria 205660
177 Ga0496116_0008730 3300048919 Bacteria 8746
178 Ga0496117_0004355 3300048920 Bacteria 15707
179 Ga0496117_0213715 3300048920 Bacteria 1079
180 Ga0496118_0051883 3300048921 Bacteria 3134
181 Ga0496121_0000061 3300048924 Bacteria 275757
182 Ga0496121_0000637 3300048924 Bacteria 65479
183 Ga0496121_0048386 3300048924 Bacteria 3617
184 Ga0496122_0002243 3300048925 Bacteria 28074
185 Ga0496122_0067530 3300048925 Bacteria 2574
186 Ga0496123_0003131 3300048926 Bacteria 18980
187 Ga0496123_0021177 3300048926 Bacteria 5060
188 Ga0496124_0000374 3300048927 Bacteria 81451
189 Ga0496124_0009258 3300048927 Bacteria 10159
190 Ga0496125_0000798 3300048928 Bacteria 51397
191 Ga0496125_0065000 3300048928 Bacteria 2894
192 Ga0496126_0000512 3300048929 Bacteria 75587
193 Ga0495678_132876 3300049459 Bacteria 823
194 Ga0495682_0013263 3300049460 Bacteria 3141
195 nmdc:mga0k408_1713_c1 3300050493 Bacteria 11794
196 nmdc:mga09592_714389_c1 3300050508 Bacteria 852
197 Ga0500643_013669 3300053087 Bacteria 2857
198 Ga0500643_017201 3300053087 Bacteria 2427
199 Ga0500646_0152973 3300053090 Bacteria 765
200 Ga0500562_053734 3300053108 Bacteria 1079
201 Ga0500595_000379 3300053119 Bacteria 28661
202 Ga0500608_004312 3300053122 Bacteria 5484
203 Ga0500614_004403 3300053123 Bacteria 2977
204 Ga0500618_000105 3300053125 Bacteria 68057
205 Ga0500642_0000002 3300053130 Bacteria 795093
206 Ga0500622_0010885 3300053156 Bacteria 4968
207 Ga0500645_000038 3300053730 Bacteria 112786

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300006237 Ga0097621_100521871 Ga0097621_1005218712 175
2 3300017792 Ga0163161_10013871 Ga0163161_100138712 175
3 3300025913 Ga0207695_10363888 Ga0207695_103638882 175
4 3300025914 Ga0207671_10001560 Ga0207671_1000156010 175
5 3300053090 Ga0500646_0152973 Ga0500646_0152973_51_584 175
6 3300046471 Ga0495650_0109863 Ga0495650_0109863_25_582 181
7 3300046501 Ga0495607_0180042 Ga0495607_0180042_210_791 185
8 3300046506 Ga0495583_0165644 Ga0495583_0165644_11_571 185
9 3300048924 Ga0496121_0000061 Ga0496121_0000061_6665_7234 186
10 3300053119 Ga0500595_000379 Ga0500595_000379_24223_24852 193
11 iso_pu_bacteria 2935353572 2935359302 197
12 iso_pu_bacteria 8019769354 8019775282 197
13 iso_pu_bacteria 8057798959 8057799442 197
14 3300003316 rootH1_10140126 rootH1_101401261 198
15 3300005618 Ga0068864_100465472 Ga0068864_1004654722 199
16 3300026095 Ga0207676_10417073 Ga0207676_104170732 199
17 iso_pu_bacteria 2739367664 2739652302 199
18 iso_pu_bacteria 2739367865 2740030776 199
19 3300009148 Ga0105243_10109007 Ga0105243_101090073 200
20 3300009553 Ga0105249_10107198 Ga0105249_101071982 200
21 3300013102 Ga0157371_10002004 Ga0157371_1000200424 200
22 3300046507 Ga0495606_0025698 Ga0495606_0025698_744_1373 200
23 3300046810 Ga0495660_0000424 Ga0495660_0000424_33045_33674 200
24 3300047472 Ga0495686_0046325 Ga0495686_0046325_1000_1629 200
25 iso_pu_bacteria 2643221560 2643823049 200
26 iso_pu_bacteria 2643221584 2643929287 200
27 iso_pu_bacteria 2928959182 2928962468 200
28 3300003323 rootH1_10070754 rootH1_100707542 201
29 3300005288 Ga0065714_10119753 Ga0065714_101197531 201
30 3300006195 Ga0075366_10000951 Ga0075366_100009516 201
31 3300006353 Ga0075370_10090477 Ga0075370_100904772 201
32 3300009093 Ga0105240_10121435 Ga0105240_101214352 201
33 3300009545 Ga0105237_10001576 Ga0105237_1000157617 201
34 3300009545 Ga0105237_10010344 Ga0105237_100103444 201
35 3300010375 Ga0105239_10005247 Ga0105239_100052478 201
36 3300025914 Ga0207671_10002524 Ga0207671_1000252417 201
37 3300028794 Ga0307515_10000077 Ga0307515_1000007719 201
38 3300028794 Ga0307515_10004178 Ga0307515_1000417821 201
39 3300031251 Ga0265327_10153750 Ga0265327_101537501 201
40 3300031548 Ga0307408_100002142 Ga0307408_10000214217 201
41 3300032002 Ga0307416_100305959 Ga0307416_1003059591 201
42 3300033179 Ga0307507_10000097 Ga0307507_1000009730 201
43 3300038443 Ga0395901_1084529 Ga0395901_1084529_108_740 201
44 3300046492 Ga0495585_0000235 Ga0495585_0000235_50463_51077 201
45 3300046516 Ga0495628_0176156 Ga0495628_0176156_100_714 201
46 3300046518 Ga0495631_0100623 Ga0495631_0100623_269_883 201
47 3300046524 Ga0495648_0035054 Ga0495648_0035054_1193_1807 201
48 3300046538 Ga0495609_0021017 Ga0495609_0021017_606_1220 201
49 3300046557 Ga0495622_0071825 Ga0495622_0071825_555_1169 201
50 3300046558 Ga0495633_0000361 Ga0495633_0000361_46396_47010 201
51 3300046616 Ga0495668_0000058 Ga0495668_0000058_68255_68869 201
52 3300046616 Ga0495668_0419600 Ga0495668_0419600_51_665 201
53 3300046660 Ga0495625_0000641 Ga0495625_0000641_43852_44466 201
54 3300046660 Ga0495625_0007675 Ga0495625_0007675_518_1132 201
55 3300046660 Ga0495625_0027057 Ga0495625_0027057_1107_1721 201
56 3300046683 Ga0495658_0012925 Ga0495658_0012925_2920_3534 201
57 3300046692 Ga0495671_0333657 Ga0495671_0333657_65_679 201
58 3300048089 Ga0495614_0046483 Ga0495614_0046483_33_647 201
59 3300049459 Ga0495678_132876 Ga0495678_132876_70_684 201
60 3300049460 Ga0495682_0013263 Ga0495682_0013263_2431_3045 201
61 3300050493 nmdc:mga0k408_1713_c1 nmdc:mga0k408_1713_c1_8596_9210 201
62 3300053122 Ga0500608_004312 Ga0500608_004312_3408_4022 201
63 3300053123 Ga0500614_004403 Ga0500614_004403_1037_1651 201
64 3300053125 Ga0500618_000105 Ga0500618_000105_10195_10809 201
65 3300003323 rootH1_10006076 rootH1_1000607621 202
66 3300005985 Ga0081539_10087352 Ga0081539_100873522 202
67 3300006173 Ga0070716_100278452 Ga0070716_1002784521 202
68 3300044712 Ga0453684_0013412 Ga0453684_0013412_5904_6530 202
69 3300045051 Ga0451576_0000002 Ga0451576_0000002_161208_161825 202
70 iso_pu_bacteria 2721755487 2722729173 202
71 iso_pu_bacteria 2904780799 2904780895 202
72 iso_pu_bacteria 2919177583 2919180641 202
73 3300001979 JGI24740J21852_10009800 JGI24740J21852_100098006 203
74 3300001989 JGI24739J22299_10005553 JGI24739J22299_100055533 203
75 3300002067 JGI24735J21928_10006962 JGI24735J21928_100069626 203
76 3300003215 JGI25153J46596_10000261 JGI25153J46596_1000026122 203
77 3300003215 JGI25153J46596_10043013 JGI25153J46596_100430132 203
78 3300003320 rootH2_10050112 rootH2_100501122 203
79 3300003320 rootH2_10079839 rootH2_100798392 203
80 3300003791 Ga0055530_10006019 Ga0055530_100060195 203
81 3300003791 Ga0055530_10010877 Ga0055530_100108772 203
82 3300003791 Ga0055530_10038813 Ga0055530_100388131 203
83 3300003792 Ga0055540_1001340 Ga0055540_100134011 203
84 3300003794 Ga0055531_10008960 Ga0055531_100089602 203
85 3300003794 Ga0055531_10008970 Ga0055531_100089702 203
86 3300005327 Ga0070658_10248344 Ga0070658_102483442 203
87 3300005539 Ga0068853_100157911 Ga0068853_1001579112 203
88 3300005544 Ga0070686_100124056 Ga0070686_1001240562 203
89 3300005563 Ga0068855_100022422 Ga0068855_10002242211 203
90 3300005563 Ga0068855_100128165 Ga0068855_1001281653 203
91 3300005577 Ga0068857_100573360 Ga0068857_1005733601 203
92 3300005616 Ga0068852_100001483 Ga0068852_1000014832 203
93 3300005616 Ga0068852_100299582 Ga0068852_1002995822 203
94 3300005617 Ga0068859_100008061 Ga0068859_1000080618 203
95 3300005834 Ga0068851_10002249 Ga0068851_100022493 203
96 3300006880 Ga0075429_100404307 Ga0075429_1004043072 203
97 3300006931 Ga0097620_100008061 Ga0097620_1000080618 203
98 3300009177 Ga0105248_10033656 Ga0105248_100336562 203
99 3300009553 Ga0105249_10007037 Ga0105249_100070376 203
100 3300010375 Ga0105239_10384228 Ga0105239_103842283 203
101 3300013100 Ga0157373_10342772 Ga0157373_103427722 203
102 3300013102 Ga0157371_10035459 Ga0157371_100354592 203
103 3300013102 Ga0157371_10164530 Ga0157371_101645301 203
104 3300013105 Ga0157369_10052993 Ga0157369_100529936 203
105 3300013307 Ga0157372_10033373 Ga0157372_100333732 203
106 3300025245 Ga0207425_1000026 Ga0207425_100002622 203
107 3300025258 Ga0209129_1009627 Ga0209129_10096272 203
108 3300025263 Ga0209565_1000099 Ga0209565_100009949 203
109 3300025273 Ga0209673_1005961 Ga0209673_10059613 203
110 3300025292 Ga0209676_1005775 Ga0209676_10057753 203
111 3300025292 Ga0209676_1009587 Ga0209676_10095872 203
112 3300025292 Ga0209676_1015818 Ga0209676_10158182 203
113 3300025292 Ga0209676_1050229 Ga0209676_10502291 203
114 3300025294 Ga0209025_1000876 Ga0209025_100087622 203
115 3300025294 Ga0209025_1042589 Ga0209025_10425892 203
116 3300025295 Ga0209564_1001189 Ga0209564_100118932 203
117 3300025295 Ga0209564_1001518 Ga0209564_100151819 203
118 3300025297 Ga0209758_1000004 Ga0209758_1000004964 203
119 3300025297 Ga0209758_1000200 Ga0209758_100020028 203
120 3300025297 Ga0209758_1051973 Ga0209758_10519732 203
121 3300025298 Ga0209050_1000001 Ga0209050_10000012965 203
122 3300025298 Ga0209050_1007068 Ga0209050_10070683 203
123 3300025298 Ga0209050_1022665 Ga0209050_10226652 203
124 3300025303 Ga0209051_1002171 Ga0209051_10021714 203
125 3300025303 Ga0209051_1013346 Ga0209051_10133462 203
126 3300025304 Ga0209257_1000886 Ga0209257_100088621 203
127 3300025304 Ga0209257_1000904 Ga0209257_100090421 203
128 3300025304 Ga0209257_1008248 Ga0209257_10082482 203
129 3300025321 Ga0207656_10009038 Ga0207656_100090384 203
130 3300025904 Ga0207647_10003195 Ga0207647_100031953 203
131 3300025909 Ga0207705_10188197 Ga0207705_101881972 203
132 3300025913 Ga0207695_10352234 Ga0207695_103522342 203
133 3300025933 Ga0207706_10030888 Ga0207706_100308886 203
134 3300025941 Ga0207711_10018879 Ga0207711_100188798 203
135 3300025949 Ga0207667_10004075 Ga0207667_100040752 203
136 3300025949 Ga0207667_10096522 Ga0207667_100965223 203
137 3300025961 Ga0207712_10049182 Ga0207712_100491822 203
138 3300026041 Ga0207639_10010889 Ga0207639_100108898 203
139 3300026116 Ga0207674_10061770 Ga0207674_100617705 203
140 3300026142 Ga0207698_10000865 Ga0207698_1000086516 203
141 3300031548 Ga0307408_100029392 Ga0307408_1000293923 203
142 3300031731 Ga0307405_10075078 Ga0307405_100750782 203
143 3300031901 Ga0307406_10046061 Ga0307406_100460612 203
144 3300031911 Ga0307412_10007667 Ga0307412_100076678 203
145 3300032004 Ga0307414_10090637 Ga0307414_100906372 203
146 3300037471 Ga0395905_0000192 Ga0395905_0000192_76195_76821 203
147 3300037471 Ga0395905_0134379 Ga0395905_0134379_394_1011 203
148 3300038705 Ga0237819_00436 Ga0237819_00436_2356_2979 203
149 3300041410 Ga0439461_0052501 Ga0439461_0052501_52_678 203
150 3300044693 Ga0466961_0081601 Ga0466961_0081601_1226_1852 203
151 3300044693 Ga0466961_0103493 Ga0466961_0103493_59_685 203
152 3300045836 Ga0466958_0078658 Ga0466958_0078658_1082_1699 203
153 3300046453 Ga0495627_000681 Ga0495627_000681_9812_10435 203
154 3300046460 Ga0495638_0000011 Ga0495638_0000011_103117_103743 203
155 3300046460 Ga0495638_0003139 Ga0495638_0003139_3927_4553 203
156 3300046471 Ga0495650_0001261 Ga0495650_0001261_9801_10424 203
157 3300046506 Ga0495583_0001457 Ga0495583_0001457_1278_1904 203
158 3300046507 Ga0495606_0000497 Ga0495606_0000497_46232_46849 203
159 3300046513 Ga0495616_0000013 Ga0495616_0000013_27092_27712 203
160 3300046515 Ga0495620_0010517 Ga0495620_0010517_3715_4338 203
161 3300046519 Ga0495632_0080902 Ga0495632_0080902_351_977 203
162 3300046522 Ga0495643_0001399 Ga0495643_0001399_2878_3495 203
163 3300046524 Ga0495648_0000036 Ga0495648_0000036_102971_103597 203
164 3300046558 Ga0495633_0017357 Ga0495633_0017357_1755_2381 203
165 3300046660 Ga0495625_0001098 Ga0495625_0001098_6581_7198 203
166 3300046660 Ga0495625_0084052 Ga0495625_0084052_1280_1903 203
167 3300046660 Ga0495625_0321685 Ga0495625_0321685_198_824 203
168 3300046684 Ga0495669_0000047 Ga0495669_0000047_11984_12601 203
169 3300046691 Ga0495670_0000024 Ga0495670_0000024_68372_68989 203
170 3300046692 Ga0495671_0000054 Ga0495671_0000054_113954_114580 203
171 3300046810 Ga0495660_0017048 Ga0495660_0017048_1753_2379 203
172 3300047323 Ga0495683_0034692 Ga0495683_0034692_1247_1864 203
173 3300047469 Ga0495673_0000158 Ga0495673_0000158_114191_114817 203
174 3300047470 Ga0495681_0000663 Ga0495681_0000663_9795_10418 203
175 3300047472 Ga0495686_0000121 Ga0495686_0000121_21268_21885 203
176 3300048090 Ga0495615_0000019 Ga0495615_0000019_1550_2170 203
177 3300048904 Ga0496101_0082581 Ga0496101_0082581_122_748 203
178 3300048904 Ga0496101_0352570 Ga0496101_0352570_55_678 203
179 3300048909 Ga0496106_0051045 Ga0496106_0051045_1787_2413 203
180 3300048910 Ga0496107_0000019 Ga0496107_0000019_83990_84616 203
181 3300048913 Ga0496110_0019647 Ga0496110_0019647_260_886 203
182 3300048919 Ga0496116_0000093 Ga0496116_0000093_116284_116904 203
183 3300048920 Ga0496117_0213715 Ga0496117_0213715_83_703 203
184 3300048921 Ga0496118_0051883 Ga0496118_0051883_1961_2581 203
185 3300048924 Ga0496121_0000637 Ga0496121_0000637_8492_9118 203
186 3300048924 Ga0496121_0048386 Ga0496121_0048386_1078_1701 203
187 3300048925 Ga0496122_0002243 Ga0496122_0002243_13732_14352 203
188 3300048926 Ga0496123_0003131 Ga0496123_0003131_1082_1702 203
189 3300048927 Ga0496124_0000374 Ga0496124_0000374_72547_73167 203
190 3300048927 Ga0496124_0009258 Ga0496124_0009258_2074_2700 203
191 3300048928 Ga0496125_0000798 Ga0496125_0000798_49218_49844 203
192 3300048929 Ga0496126_0000512 Ga0496126_0000512_50074_50694 203
193 3300050508 nmdc:mga09592_714389_c1 nmdc:mga09592_714389_c1_194_820 203
194 3300053087 Ga0500643_013669 Ga0500643_013669_634_1251 203
195 3300053087 Ga0500643_017201 Ga0500643_017201_885_1511 203
196 3300053108 Ga0500562_053734 Ga0500562_053734_276_893 203
197 3300053130 Ga0500642_0000002 Ga0500642_0000002_725235_725861 203
198 3300053156 Ga0500622_0010885 Ga0500622_0010885_3947_4627 203
199 3300053730 Ga0500645_000038 Ga0500645_000038_98634_99251 203
200 3300003322 rootL2_10253715 rootL2_102537152 204
201 3300005563 Ga0068855_100344992 Ga0068855_1003449922 204
202 3300025949 Ga0207667_10552538 Ga0207667_105525382 204
203 3300031711 Ga0265314_10004847 Ga0265314_100048472 204
204 3300035114 Ga0373939_0124234 Ga0373939_0124234_108_734 204
205 3300035695 Ga0373927_0031458 Ga0373927_0031458_212_838 204
206 3300037068 Ga0373925_0004545 Ga0373925_0004545_3621_4247 204
207 3300044712 Ga0453684_0011666 Ga0453684_0011666_3856_4488 204
208 3300044712 Ga0453684_0012979 Ga0453684_0012979_10027_10677 204
209 2162886007 SwRhRL2b_contig_1467723 SwRhRL2b_0259.00007710 205
210 3300005289 Ga0065704_10000361 Ga0065704_1000036121 205
211 3300009148 Ga0105243_10000012 Ga0105243_10000012222 205
212 3300025935 Ga0207709_10000006 Ga0207709_10000006522 205
213 3300046460 Ga0495638_0063850 Ga0495638_0063850_601_1248 205
214 3300048919 Ga0496116_0008730 Ga0496116_0008730_3884_4507 205
215 3300048920 Ga0496117_0004355 Ga0496117_0004355_11213_11836 205
216 3300048925 Ga0496122_0067530 Ga0496122_0067530_1575_2198 205
217 3300048926 Ga0496123_0021177 Ga0496123_0021177_3868_4491 205
218 3300048928 Ga0496125_0065000 Ga0496125_0065000_884_1507 205

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00472

RF-1

RF-1 domain

99

206

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
6c4h-assembly1.cif.gz_v conformation of methylated ggq in the peptidyl transferase center during translation termination (ptc region) 0.8709 106 167
6c4h-assembly1.cif.gz_v conformation of methylated ggq in the peptidyl transferase center during translation termination (ptc region) 0.8455 106 167
5u4j-assembly1.cif.gz_v structural basis of co-translational quality control by arfa and rf2 bound to ribosome 0.8421 4 100
7sa4-assembly1.cif.gz_8 damaged 70s ribosome with prfh bound 0.7863 4 205
7sa4-assembly1.cif.gz_8 damaged 70s ribosome with prfh bound 0.7763 4 205
ID Description Score Start End Superfamily
af_Q8ILH8_172_251_3.30.160.20 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.8797 100 178 3.30.160.20
af_A0A1D8PLX1_260_347_3.30.160.20 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.8717 105 188 3.30.160.20
6c4hv00 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.8709 106 167 3.30.160.20
af_A4I1J1_287_346_3.30.160.20 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.8668 107 165 3.30.160.20
af_Q4DIB4_298_393_3.30.160.20 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.8605 99 186 3.30.160.20
ID Description Score Start End GO Terms
AF-A0A7S3A2G8-F1-model_v4 Prokaryotic-type class I peptide chain release factors domain-containing protein 0.9054 106 166 GO:0003747
GO:0005739
AF-Q21NY3-F1-model_v4 Class I peptide chain release factor 0.9047 1 205 GO:0003747
AF-Q21NY3-F1-model_v4 Class I peptide chain release factor 0.9006 1 205 GO:0003747
AF-A0A7R9YIM0-F1-model_v4 Prokaryotic-type class I peptide chain release factors domain-containing protein 0.855 98 188 GO:0003747
AF-A0A800DFT2-F1-model_v4 PCRF domain-containing protein 0.8503 98 188 GO:0003747
GO:0005737

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pLDDT pTM Quality
86.78 0.66 Medium
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Predicted Structure (AlphaFold2)

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