F328371
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 217 | 160 | 434 | 393 |
Family's Representative Sequence
| Representative Sequence | 3300005329|Ga0070683_100165880|Ga0070683_1001658802 |
| Length | 420 |
| Sequence | LTAGHGEGFRPAIGLPDSTQLFYNSLMSSITVISSAGQPVGRFGGYGGRYVPESLIPACQAVADAFAQAWADPGFRGSLARLLSVYAGRPTPLTPALRLSAELGVTVLLKREDLTHTGSHKINNVMGQALLARRMGRTRLIAETGAGMHGVATATAGALLGLPVKVFMGERDVERQAHNVFRMRLLGAEVVPVTTGSRTLKDATSAAMRHWVADADEAYYCVGSVIGPHPYPTMVREFQRVIGDEARRQCATELPAAVPDYVVACVGGGSNAAGTFAGFIDTAAKLVGVEAEGGSGASNGEIGVLHGFQSLFLQDEHGQIKEAHSIAAGLDYPGVGPEHAYLRDLGRARYVTVSDAEAIAAAVRLARTEGILPAIESAHALAWVIRSAGTSFLPSGSTVLVTLSGRGDKDVTTLMAEAEL |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 2 | 3300003203 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 3 | 3300003911 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 4 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Metagenome | Rhizosphere |
| 6 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005365 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG | Metagenome | Rhizosphere |
| 8 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 10 | 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 12 | 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Metagenome | Rhizosphere |
| 13 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 14 | 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Metagenome | Rhizosphere |
| 15 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 16 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 17 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 18 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 19 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 20 | 3300005981 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 | Metagenome | Rhizosphere |
| 21 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 22 | 3300006048 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 | Metagenome | Endosphere |
| 23 | 3300006852 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Metagenome | Rhizosphere |
| 24 | 3300006871 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Metagenome | Rhizosphere |
| 25 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 26 | 3300006914 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Metagenome | Rhizosphere |
| 27 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 28 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 29 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 30 | 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 31 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 32 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 33 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 35 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300025939 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 47 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300028556 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG | Metagenome | Rhizosphere |
| 50 | 3300028558 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG | Metagenome | Rhizosphere |
| 51 | 3300028563 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG | Metagenome | Rhizosphere |
| 52 | 3300028577 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG | Metagenome | Rhizosphere |
| 53 | 3300028666 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG | Metagenome | Rhizosphere |
| 54 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 55 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 56 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 57 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 58 | 3300031507 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM | Metagenome | Unclassified |
| 59 | 3300031616 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM | Metagenome | Unclassified |
| 60 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 61 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 62 | 3300033179 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM | Metagenome | Unclassified |
| 63 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 64 | 3300035111 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 65 | 3300035113 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 | Metagenome | Rhizosphere |
| 66 | 3300035120 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 | Metagenome | Rhizosphere |
| 67 | 3300035172 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 | Metagenome | Rhizosphere |
| 68 | 3300035207 | Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 | Metagenome | Rhizosphere |
| 69 | 3300035691 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 | Metagenome | Rhizosphere |
| 70 | 3300035692 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 71 | 3300035695 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 | Metagenome | Rhizosphere |
| 72 | 3300035724 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 | Metagenome | Rhizosphere |
| 73 | 3300035725 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 | Metagenome | Rhizosphere |
| 74 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 75 | 3300036647 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA | Metagenome | Rhizosphere |
| 76 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 77 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 78 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 79 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 80 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 81 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 82 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 83 | 3300046462 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere | Metagenome | Rhizosphere |
| 84 | 3300046463 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere | Metagenome | Rhizosphere |
| 85 | 3300046472 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere | Metagenome | Rhizosphere |
| 86 | 3300046507 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere | Metagenome | Rhizosphere |
| 87 | 3300046511 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere | Metagenome | Rhizosphere |
| 88 | 3300046514 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere | Metagenome | Rhizosphere |
| 89 | 3300046516 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere | Metagenome | Rhizosphere |
| 90 | 3300046517 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere | Metagenome | Rhizosphere |
| 91 | 3300046526 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere | Metagenome | Rhizosphere |
| 92 | 3300046529 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere | Metagenome | Rhizosphere |
| 93 | 3300046536 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere | Metagenome | Rhizosphere |
| 94 | 3300046543 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere | Metagenome | Rhizosphere |
| 95 | 3300046559 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere | Metagenome | Rhizosphere |
| 96 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 97 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 98 | 3300046663 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere | Metagenome | Rhizosphere |
| 99 | 3300046675 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere | Metagenome | Rhizosphere |
| 100 | 3300046809 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere | Metagenome | Rhizosphere |
| 101 | 3300047317 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere | Metagenome | Rhizosphere |
| 102 | 3300047319 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere | Metagenome | Rhizosphere |
| 103 | 3300047322 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere | Metagenome | Rhizosphere |
| 104 | 3300047323 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere | Metagenome | Rhizosphere |
| 105 | 3300047471 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere | Metagenome | Rhizosphere |
| 106 | 3300048088 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere | Metagenome | Rhizosphere |
| 107 | 3300048091 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere | Metagenome | Rhizosphere |
| 108 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 109 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 110 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 111 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 112 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 113 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 114 | 3300049568 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 115 | 3300049569 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 116 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 117 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 118 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 119 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 120 | 3300049576 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 121 | 3300049577 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 122 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 123 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 124 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 125 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 126 | 3300049582 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 127 | 3300049584 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 | Metagenome | Rhizosphere |
| 128 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 129 | 3300049587 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 | Metagenome | Rhizosphere |
| 130 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 131 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 132 | 3300049591 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 | Metagenome | Rhizosphere |
| 133 | 3300049592 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 | Metagenome | Rhizosphere |
| 134 | 3300049593 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 | Metagenome | Rhizosphere |
| 135 | 3300049741 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 | Metagenome | Rhizosphere |
| 136 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 137 | 3300049743 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 | Metagenome | Rhizosphere |
| 138 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 139 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 140 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 141 | 3300049824 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 142 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 143 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 144 | 3300050512 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation | Metagenome | Rhizosphere |
| 145 | 3300050513 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation | Metagenome | Rhizosphere |
| 146 | 3300050514 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation | Metagenome | Rhizosphere |
| 147 | 3300050515 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation | Metagenome | Rhizosphere |
| 148 | 3300053077 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere | Metagenome | Rhizosphere |
| 149 | 3300053085 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere | Metagenome | Rhizosphere |
| 150 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
| 151 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 152 | 3300061734 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) | Metagenome | Rhizosphere |
| 153 | 2622736626 | Micromonospora rhizosphaerae DSM 45431 | Isolate | Rhizosphere |
| 154 | 2751185782 | Actinoplanes subtropicus NRRL B-24665 | Isolate | Rhizosphere |
| 155 | 2880489317 | Micromonospora ureilytica DSM 101692 | Isolate | Unclassified |
| 156 | 2891562705 | Microbispora tritici MT50 | Isolate | Unclassified |
| 157 | 2895442618 | Nonomuraea phyllanthi PA1-10 | Isolate | Unclassified |
| 158 | 2917736166 | Amycolatopsis dendrobii DR6-1 | Isolate | Unclassified |
| 159 | 8055066027 | Sphaerisporangium corydalis NEAU-YHS15 | Isolate | Unclassified |
| 160 | 8055172936 | Sphaerisporangium perillae NEAU-ZS1 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 95.39 |
| Metatranscriptomes | 0.92 |
| Isolates | 3.69 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 0.46 |
| Nodule | 0 |
| Rhizoplane | 2.3 |
| Rhizosphere | 90.78 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0070683_100165880 | 3300005329 | Bacteria | 2095 |
| 2 | JGI25406J46586_10000575 | 3300003203 | Bacteria | 17352 |
| 3 | JGI25405J52794_10000150 | 3300003911 | Bacteria | 8496 |
| 4 | Ga0070683_100007875 | 3300005329 | Bacteria | 9027 |
| 5 | Ga0070670_100263421 | 3300005331 | Bacteria | 1503 |
| 6 | Ga0068868_100071910 | 3300005338 | Bacteria | 2759 |
| 7 | Ga0070668_100003240 | 3300005347 | Bacteria | 11994 |
| 8 | Ga0070668_100010877 | 3300005347 | Bacteria | 6771 |
| 9 | Ga0070688_100095080 | 3300005365 | Archaea | 1955 |
| 10 | Ga0070714_100017807 | 3300005435 | Bacteria | 5761 |
| 11 | Ga0070713_100148008 | 3300005436 | Bacteria | 2086 |
| 12 | Ga0070708_100091175 | 3300005445 | Bacteria | 2775 |
| 13 | Ga0070708_100218380 | 3300005445 | Bacteria | 1787 |
| 14 | Ga0070681_10118220 | 3300005458 | Bacteria | 2587 |
| 15 | Ga0070706_100029058 | 3300005467 | Bacteria | 5093 |
| 16 | Ga0070706_100254475 | 3300005467 | Bacteria | 1639 |
| 17 | Ga0070684_100029168 | 3300005535 | Bacteria | 4673 |
| 18 | Ga0070697_100054293 | 3300005536 | Bacteria | 3257 |
| 19 | Ga0070697_100139564 | 3300005536 | Bacteria | 2037 |
| 20 | Ga0068855_100045909 | 3300005563 | Bacteria | 5165 |
| 21 | Ga0070664_100182834 | 3300005564 | Bacteria | 1864 |
| 22 | Ga0068858_100044488 | 3300005842 | Bacteria | 4115 |
| 23 | Ga0068860_100134024 | 3300005843 | Bacteria | 2378 |
| 24 | Ga0081455_10000422 | 3300005937 | Bacteria | 55396 |
| 25 | Ga0081538_10001160 | 3300005981 | Bacteria | 27853 |
| 26 | Ga0081539_10000187 | 3300005985 | Bacteria | 145407 |
| 27 | Ga0081539_10001977 | 3300005985 | Bacteria | 31209 |
| 28 | Ga0081539_10005158 | 3300005985 | Bacteria | 13590 |
| 29 | Ga0081539_10066125 | 3300005985 | Bacteria | 1961 |
| 30 | Ga0075363_100014323 | 3300006048 | Bacteria | 3871 |
| 31 | Ga0075433_10007127 | 3300006852 | Bacteria | 8852 |
| 32 | Ga0075433_10051701 | 3300006852 | Bacteria | 3579 |
| 33 | Ga0075433_10125026 | 3300006852 | Bacteria | 2284 |
| 34 | Ga0075434_100156562 | 3300006871 | Bacteria | 2297 |
| 35 | Ga0075429_100044351 | 3300006880 | Bacteria | 3869 |
| 36 | Ga0075436_100007573 | 3300006914 | Bacteria | 7417 |
| 37 | Ga0105240_10021325 | 3300009093 | Bacteria | 8618 |
| 38 | Ga0105240_10520350 | 3300009093 | Bacteria | 1320 |
| 39 | Ga0157370_10135208 | 3300013104 | Bacteria | 2298 |
| 40 | Ga0157378_10004941 | 3300013297 | Bacteria | 11688 |
| 41 | Ga0206353_11177061 | 3300020082 | Bacteria | 2341 |
| 42 | Ga0206353_11983092 | 3300020082 | Bacteria | 3251 |
| 43 | Ga0207707_10089983 | 3300025912 | Bacteria | 2682 |
| 44 | Ga0207695_10029042 | 3300025913 | Bacteria | 6120 |
| 45 | Ga0207695_10177640 | 3300025913 | Bacteria | 2051 |
| 46 | Ga0207660_10122437 | 3300025917 | Bacteria | 1971 |
| 47 | Ga0207660_10246582 | 3300025917 | Bacteria | 1409 |
| 48 | Ga0207657_10115449 | 3300025919 | Bacteria | 2213 |
| 49 | Ga0207652_10073818 | 3300025921 | Bacteria | 2968 |
| 50 | Ga0207700_10159758 | 3300025928 | Bacteria | 1871 |
| 51 | Ga0207664_10016728 | 3300025929 | Bacteria | 5357 |
| 52 | Ga0207665_10030010 | 3300025939 | Bacteria | 3593 |
| 53 | Ga0207691_10128518 | 3300025940 | Bacteria | 2240 |
| 54 | Ga0207689_10300499 | 3300025942 | Bacteria | 1330 |
| 55 | Ga0207667_10103038 | 3300025949 | Bacteria | 2944 |
| 56 | Ga0207668_10011731 | 3300025972 | Bacteria | 5338 |
| 57 | Ga0207658_10061380 | 3300025986 | Bacteria | 2809 |
| 58 | Ga0207703_10279579 | 3300026035 | Bacteria | 1515 |
| 59 | Ga0207678_10088232 | 3300026067 | Bacteria | 2651 |
| 60 | Ga0207678_10138343 | 3300026067 | Bacteria | 2078 |
| 61 | Ga0207641_10435928 | 3300026088 | Bacteria | 1264 |
| 62 | Ga0207674_10027440 | 3300026116 | Bacteria | 6022 |
| 63 | Ga0268266_10317584 | 3300028379 | Bacteria | 1457 |
| 64 | Ga0265337_1002697 | 3300028556 | Bacteria | 7972 |
| 65 | Ga0265326_10008482 | 3300028558 | Bacteria | 3098 |
| 66 | Ga0265319_1000841 | 3300028563 | Bacteria | 19572 |
| 67 | Ga0265318_10004111 | 3300028577 | Bacteria | 7133 |
| 68 | Ga0265336_10011336 | 3300028666 | Bacteria | 3035 |
| 69 | Ga0265338_10038890 | 3300028800 | Bacteria | 4498 |
| 70 | Ga0265339_10006361 | 3300031249 | Bacteria | 7763 |
| 71 | Ga0265327_10012839 | 3300031251 | Bacteria | 5613 |
| 72 | Ga0265327_10018885 | 3300031251 | Bacteria | 4257 |
| 73 | Ga0307513_10037444 | 3300031456 | Bacteria | 5399 |
| 74 | Ga0307509_10009125 | 3300031507 | Bacteria | 12469 |
| 75 | Ga0307508_10022881 | 3300031616 | Bacteria | 5679 |
| 76 | Ga0307406_10278768 | 3300031901 | Bacteria | 1274 |
| 77 | Ga0307409_100038922 | 3300031995 | Bacteria | 3523 |
| 78 | Ga0307507_10015884 | 3300033179 | Bacteria | 8813 |
| 79 | Ga0307507_10021156 | 3300033179 | Bacteria | 7254 |
| 80 | Ga0307510_10191516 | 3300033180 | Bacteria | 1592 |
| 81 | Ga0373923_0037019 | 3300035111 | Bacteria | 1995 |
| 82 | Ga0373936_0075941 | 3300035113 | Bacteria | 1391 |
| 83 | Ga0373957_0038762 | 3300035120 | Bacteria | 1785 |
| 84 | Ga0373955_0008542 | 3300035172 | Bacteria | 4760 |
| 85 | Ga0373942_0000257 | 3300035207 | Bacteria | 14167 |
| 86 | Ga0373942_0037606 | 3300035207 | Bacteria | 1309 |
| 87 | Ga0373931_0001257 | 3300035691 | Bacteria | 10821 |
| 88 | Ga0373931_0013301 | 3300035691 | Bacteria | 4005 |
| 89 | Ga0373931_0021172 | 3300035691 | Bacteria | 3261 |
| 90 | Ga0373935_0013426 | 3300035692 | Bacteria | 4941 |
| 91 | Ga0373927_0076506 | 3300035695 | Bacteria | 2167 |
| 92 | Ga0373933_0021867 | 3300035724 | Bacteria | 3638 |
| 93 | Ga0373947_0166087 | 3300035725 | Bacteria | 1430 |
| 94 | Ga0373937_0039264 | 3300036401 | Bacteria | 4314 |
| 95 | Ga0316582_0089877 | 3300036647 | Bacteria | 2020 |
| 96 | Ga0395900_0008077 | 3300037418 | Bacteria | 10833 |
| 97 | Ga0395900_0019467 | 3300037418 | Bacteria | 6921 |
| 98 | Ga0395898_0330473 | 3300037466 | Bacteria | 1453 |
| 99 | Ga0395901_0023928 | 3300038443 | Bacteria | 6266 |
| 100 | Ga0395901_0037805 | 3300038443 | Bacteria | 4992 |
| 101 | Ga0436361_1077790 | 3300039447 | Bacteria | 1648 |
| 102 | Ga0466963_0035419 | 3300044694 | Bacteria | 3252 |
| 103 | Ga0466968_0077830 | 3300044735 | Bacteria | 1453 |
| 104 | Ga0495629_0078197 | 3300046459 | Bacteria | 2310 |
| 105 | Ga0495651_0172229 | 3300046462 | Bacteria | 1540 |
| 106 | Ga0495653_0007473 | 3300046463 | Eukaryota | 8938 |
| 107 | Ga0495653_0009485 | 3300046463 | Bacteria | 7968 |
| 108 | Ga0495653_0062601 | 3300046463 | Bacteria | 2810 |
| 109 | Ga0495580_0063335 | 3300046472 | Bacteria | 2594 |
| 110 | Ga0495580_0141468 | 3300046472 | Bacteria | 1668 |
| 111 | Ga0495606_0001022 | 3300046507 | Bacteria | 40570 |
| 112 | Ga0495608_0022848 | 3300046511 | Bacteria | 4291 |
| 113 | Ga0495618_0012255 | 3300046514 | Bacteria | 5205 |
| 114 | Ga0495618_0046516 | 3300046514 | Bacteria | 2739 |
| 115 | Ga0495628_0016145 | 3300046516 | Bacteria | 6230 |
| 116 | Ga0495630_0012878 | 3300046517 | Bacteria | 6076 |
| 117 | Ga0495630_0124048 | 3300046517 | Bacteria | 1960 |
| 118 | Ga0495666_0020747 | 3300046526 | Bacteria | 3253 |
| 119 | Ga0495652_0184257 | 3300046529 | Bacteria | 1599 |
| 120 | Ga0495587_0044328 | 3300046536 | Bacteria | 2646 |
| 121 | Ga0495645_0144409 | 3300046543 | Bacteria | 1658 |
| 122 | Ga0495667_0005079 | 3300046559 | Bacteria | 8902 |
| 123 | Ga0495668_0004302 | 3300046616 | Bacteria | 10196 |
| 124 | Ga0495625_0001209 | 3300046660 | Bacteria | 32800 |
| 125 | Ga0495635_0001516 | 3300046663 | Bacteria | 15547 |
| 126 | Ga0495657_0028721 | 3300046675 | Bacteria | 3908 |
| 127 | Ga0495600_0062267 | 3300046809 | Bacteria | 2437 |
| 128 | Ga0495604_0072514 | 3300047317 | Bacteria | 2602 |
| 129 | Ga0495674_0051112 | 3300047319 | Bacteria | 3644 |
| 130 | Ga0495674_0070746 | 3300047319 | Bacteria | 3014 |
| 131 | Ga0495680_0037241 | 3300047322 | Bacteria | 3897 |
| 132 | Ga0495683_0022178 | 3300047323 | Bacteria | 3267 |
| 133 | Ga0495684_0037379 | 3300047471 | Bacteria | 3723 |
| 134 | Ga0495602_0097372 | 3300048088 | Bacteria | 2424 |
| 135 | Ga0495626_0001021 | 3300048091 | Bacteria | 24080 |
| 136 | Ga0496102_0252021 | 3300048905 | Bacteria | 1665 |
| 137 | Ga0496102_0444943 | 3300048905 | Bacteria | 1216 |
| 138 | Ga0496105_0023879 | 3300048908 | Bacteria | 4965 |
| 139 | Ga0496108_0000201 | 3300048911 | Bacteria | 55200 |
| 140 | Ga0496115_0010867 | 3300048918 | Bacteria | 6814 |
| 141 | Ga0496119_0018678 | 3300048922 | Bacteria | 5145 |
| 142 | Ga0496126_0023758 | 3300048929 | Bacteria | 5935 |
| 143 | Ga0501031_0045015 | 3300049568 | Archaea | 2879 |
| 144 | Ga0501031_0124020 | 3300049568 | Bacteria | 1687 |
| 145 | Ga0501032_0040486 | 3300049569 | Archaea | 3167 |
| 146 | Ga0501032_0098990 | 3300049569 | Bacteria | 1932 |
| 147 | Ga0501034_0003155 | 3300049571 | Bacteria | 18963 |
| 148 | Ga0501036_0004527 | 3300049572 | Bacteria | 11226 |
| 149 | Ga0501036_0014135 | 3300049572 | Archaea | 6639 |
| 150 | Ga0501038_0000188 | 3300049574 | Bacteria | 53537 |
| 151 | Ga0501038_0118689 | 3300049574 | Bacteria | 2184 |
| 152 | Ga0501039_0000619 | 3300049575 | Bacteria | 25707 |
| 153 | Ga0501039_0060995 | 3300049575 | Archaea | 2920 |
| 154 | Ga0501040_0000115 | 3300049576 | Bacteria | 42224 |
| 155 | Ga0501040_0010677 | 3300049576 | Archaea | 6006 |
| 156 | Ga0501041_0000088 | 3300049577 | Bacteria | 36823 |
| 157 | Ga0501042_0000088 | 3300049578 | Bacteria | 35961 |
| 158 | Ga0501042_0010475 | 3300049578 | Archaea | 6220 |
| 159 | Ga0501043_0008869 | 3300049579 | Archaea | 7914 |
| 160 | Ga0501043_0023651 | 3300049579 | Bacteria | 4818 |
| 161 | Ga0501046_0038042 | 3300049580 | Archaea | 3863 |
| 162 | Ga0501046_0051400 | 3300049580 | Bacteria | 3252 |
| 163 | Ga0501046_0222161 | 3300049580 | Archaea | 1398 |
| 164 | Ga0501047_0002696 | 3300049581 | Bacteria | 16904 |
| 165 | Ga0501047_0055131 | 3300049581 | Bacteria | 3844 |
| 166 | Ga0501048_0002928 | 3300049582 | Archaea | 13045 |
| 167 | Ga0501068_0006062 | 3300049584 | Bacteria | 6646 |
| 168 | Ga0501068_0074753 | 3300049584 | Archaea | 2072 |
| 169 | Ga0501070_0130442 | 3300049586 | Archaea | 2077 |
| 170 | Ga0501071_0001257 | 3300049587 | Archaea | 14364 |
| 171 | Ga0501071_0001761 | 3300049587 | Bacteria | 12759 |
| 172 | Ga0501072_0000992 | 3300049588 | Bacteria | 20973 |
| 173 | Ga0501072_0189770 | 3300049588 | Bacteria | 1639 |
| 174 | Ga0501074_0002278 | 3300049590 | Bacteria | 13353 |
| 175 | Ga0501074_0143073 | 3300049590 | Bacteria | 1710 |
| 176 | Ga0501075_0001264 | 3300049591 | Bacteria | 16370 |
| 177 | Ga0501075_0142931 | 3300049591 | Bacteria | 1824 |
| 178 | Ga0501076_0000602 | 3300049592 | Bacteria | 23034 |
| 179 | Ga0501076_0087019 | 3300049592 | Archaea | 2511 |
| 180 | Ga0501077_0008296 | 3300049593 | Bacteria | 6423 |
| 181 | Ga0501077_0023880 | 3300049593 | Bacteria | 3878 |
| 182 | Ga0501079_0000907 | 3300049741 | Bacteria | 20335 |
| 183 | Ga0501080_0003490 | 3300049742 | Bacteria | 13851 |
| 184 | Ga0501080_0016695 | 3300049742 | Bacteria | 6779 |
| 185 | Ga0501080_0146011 | 3300049742 | Bacteria | 2186 |
| 186 | Ga0501081_0003133 | 3300049743 | Bacteria | 10507 |
| 187 | Ga0501081_0011874 | 3300049743 | Archaea | 5706 |
| 188 | Ga0501083_0051919 | 3300049744 | Bacteria | 2756 |
| 189 | Ga0501083_0057143 | 3300049744 | Bacteria | 2613 |
| 190 | Ga0501035_0040711 | 3300049822 | Archaea | 4197 |
| 191 | Ga0501044_0125326 | 3300049823 | Archaea | 2566 |
| 192 | Ga0501045_0000351 | 3300049824 | Bacteria | 27309 |
| 193 | nmdc:mga05p37_54487_c1 | 3300050507 | Bacteria | 4921 |
| 194 | nmdc:mga09592_22433_c1 | 3300050508 | Bacteria | 5210 |
| 195 | nmdc:mga0n895_2497_c1 | 3300050512 | Bacteria | 14390 |
| 196 | nmdc:mga0rr50_1751_c1 | 3300050513 | Bacteria | 11977 |
| 197 | nmdc:mga08x19_104269_c1 | 3300050514 | Bacteria | 1884 |
| 198 | nmdc:mga08x19_7112_c1 | 3300050514 | Bacteria | 6644 |
| 199 | nmdc:mga08x19_76116_c1 | 3300050514 | Bacteria | 2195 |
| 200 | nmdc:mga0a205_43496_c1 | 3300050515 | Bacteria | 4331 |
| 201 | Ga0495601_0044938 | 3300053077 | Bacteria | 2777 |
| 202 | Ga0495619_0004475 | 3300053085 | Bacteria | 8925 |
| 203 | Ga0495619_0031468 | 3300053085 | Bacteria | 3438 |
| 204 | Ga0501084_0004006 | 3300054114 | Archaea | 11999 |
| 205 | Ga0501084_0033737 | 3300054114 | Bacteria | 4281 |
| 206 | Ga0501082_0002343 | 3300060353 | Bacteria | 16578 |
| 207 | Ga0501082_0198037 | 3300060353 | Bacteria | 1748 |
| 208 | Ga0530510_0000464 | 3300061734 | Bacteria | 26163 |
| 209 | Ga0530510_0012482 | 3300061734 | Archaea | 5967 |
| 210 | 2623590296 | 2622736626 | Bacteria | 7181580 |
| 211 | 2753271546 | 2751185782 | Bacteria | 11227053 |
| 212 | 2880490967 | 2880489317 | Bacteria | 7096270 |
| 213 | 2891563748 | 2891562705 | Bacteria | 8039471 |
| 214 | 2895451183 | 2895442618 | Bacteria | 11027144 |
| 215 | 2917740287 | 2917736166 | Bacteria | 9690793 |
| 216 | 8055070956 | 8055066027 | Bacteria | 9479577 |
| 217 | 8055173350 | 8055172936 | Bacteria | 9305943 |
| 218 | Ga0070683_100165880 | |||
| 219 | JGI25406J46586_10000575 | |||
| 220 | JGI25405J52794_10000150 | |||
| 221 | Ga0070683_100007875 | |||
| 222 | Ga0070670_100263421 | |||
| 223 | Ga0068868_100071910 | |||
| 224 | Ga0070668_100003240 | |||
| 225 | Ga0070668_100010877 | |||
| 226 | Ga0070688_100095080 | |||
| 227 | Ga0070714_100017807 | |||
| 228 | Ga0070713_100148008 | |||
| 229 | Ga0070708_100091175 | |||
| 230 | Ga0070708_100218380 | |||
| 231 | Ga0070681_10118220 | |||
| 232 | Ga0070706_100029058 | |||
| 233 | Ga0070706_100254475 | |||
| 234 | Ga0070684_100029168 | |||
| 235 | Ga0070697_100054293 | |||
| 236 | Ga0070697_100139564 | |||
| 237 | Ga0068855_100045909 | |||
| 238 | Ga0070664_100182834 | |||
| 239 | Ga0068858_100044488 | |||
| 240 | Ga0068860_100134024 | |||
| 241 | Ga0081455_10000422 | |||
| 242 | Ga0081538_10001160 | |||
| 243 | Ga0081539_10000187 | |||
| 244 | Ga0081539_10001977 | |||
| 245 | Ga0081539_10005158 | |||
| 246 | Ga0081539_10066125 | |||
| 247 | Ga0075363_100014323 | |||
| 248 | Ga0075433_10007127 | |||
| 249 | Ga0075433_10051701 | |||
| 250 | Ga0075433_10125026 | |||
| 251 | Ga0075434_100156562 | |||
| 252 | Ga0075429_100044351 | |||
| 253 | Ga0075436_100007573 | |||
| 254 | Ga0105240_10021325 | |||
| 255 | Ga0105240_10520350 | |||
| 256 | Ga0157370_10135208 | |||
| 257 | Ga0157378_10004941 | |||
| 258 | Ga0206353_11177061 | |||
| 259 | Ga0206353_11983092 | |||
| 260 | Ga0207707_10089983 | |||
| 261 | Ga0207695_10029042 | |||
| 262 | Ga0207695_10177640 | |||
| 263 | Ga0207660_10122437 | |||
| 264 | Ga0207660_10246582 | |||
| 265 | Ga0207657_10115449 | |||
| 266 | Ga0207652_10073818 | |||
| 267 | Ga0207700_10159758 | |||
| 268 | Ga0207664_10016728 | |||
| 269 | Ga0207665_10030010 | |||
| 270 | Ga0207691_10128518 | |||
| 271 | Ga0207689_10300499 | |||
| 272 | Ga0207667_10103038 | |||
| 273 | Ga0207668_10011731 | |||
| 274 | Ga0207658_10061380 | |||
| 275 | Ga0207703_10279579 | |||
| 276 | Ga0207678_10088232 | |||
| 277 | Ga0207678_10138343 | |||
| 278 | Ga0207641_10435928 | |||
| 279 | Ga0207674_10027440 | |||
| 280 | Ga0268266_10317584 | |||
| 281 | Ga0265337_1002697 | |||
| 282 | Ga0265326_10008482 | |||
| 283 | Ga0265319_1000841 | |||
| 284 | Ga0265318_10004111 | |||
| 285 | Ga0265336_10011336 | |||
| 286 | Ga0265338_10038890 | |||
| 287 | Ga0265339_10006361 | |||
| 288 | Ga0265327_10012839 | |||
| 289 | Ga0265327_10018885 | |||
| 290 | Ga0307513_10037444 | |||
| 291 | Ga0307509_10009125 | |||
| 292 | Ga0307508_10022881 | |||
| 293 | Ga0307406_10278768 | |||
| 294 | Ga0307409_100038922 | |||
| 295 | Ga0307507_10015884 | |||
| 296 | Ga0307507_10021156 | |||
| 297 | Ga0307510_10191516 | |||
| 298 | Ga0373923_0037019 | |||
| 299 | Ga0373936_0075941 | |||
| 300 | Ga0373957_0038762 | |||
| 301 | Ga0373955_0008542 | |||
| 302 | Ga0373942_0000257 | |||
| 303 | Ga0373942_0037606 | |||
| 304 | Ga0373931_0001257 | |||
| 305 | Ga0373931_0013301 | |||
| 306 | Ga0373931_0021172 | |||
| 307 | Ga0373935_0013426 | |||
| 308 | Ga0373927_0076506 | |||
| 309 | Ga0373933_0021867 | |||
| 310 | Ga0373947_0166087 | |||
| 311 | Ga0373937_0039264 | |||
| 312 | Ga0316582_0089877 | |||
| 313 | Ga0395900_0008077 | |||
| 314 | Ga0395900_0019467 | |||
| 315 | Ga0395898_0330473 | |||
| 316 | Ga0395901_0023928 | |||
| 317 | Ga0395901_0037805 | |||
| 318 | Ga0436361_1077790 | |||
| 319 | Ga0466963_0035419 | |||
| 320 | Ga0466968_0077830 | |||
| 321 | Ga0495629_0078197 | |||
| 322 | Ga0495651_0172229 | |||
| 323 | Ga0495653_0007473 | |||
| 324 | Ga0495653_0009485 | |||
| 325 | Ga0495653_0062601 | |||
| 326 | Ga0495580_0063335 | |||
| 327 | Ga0495580_0141468 | |||
| 328 | Ga0495606_0001022 | |||
| 329 | Ga0495608_0022848 | |||
| 330 | Ga0495618_0012255 | |||
| 331 | Ga0495618_0046516 | |||
| 332 | Ga0495628_0016145 | |||
| 333 | Ga0495630_0012878 | |||
| 334 | Ga0495630_0124048 | |||
| 335 | Ga0495666_0020747 | |||
| 336 | Ga0495652_0184257 | |||
| 337 | Ga0495587_0044328 | |||
| 338 | Ga0495645_0144409 | |||
| 339 | Ga0495667_0005079 | |||
| 340 | Ga0495668_0004302 | |||
| 341 | Ga0495625_0001209 | |||
| 342 | Ga0495635_0001516 | |||
| 343 | Ga0495657_0028721 | |||
| 344 | Ga0495600_0062267 | |||
| 345 | Ga0495604_0072514 | |||
| 346 | Ga0495674_0051112 | |||
| 347 | Ga0495674_0070746 | |||
| 348 | Ga0495680_0037241 | |||
| 349 | Ga0495683_0022178 | |||
| 350 | Ga0495684_0037379 | |||
| 351 | Ga0495602_0097372 | |||
| 352 | Ga0495626_0001021 | |||
| 353 | Ga0496102_0252021 | |||
| 354 | Ga0496102_0444943 | |||
| 355 | Ga0496105_0023879 | |||
| 356 | Ga0496108_0000201 | |||
| 357 | Ga0496115_0010867 | |||
| 358 | Ga0496119_0018678 | |||
| 359 | Ga0496126_0023758 | |||
| 360 | Ga0501031_0045015 | |||
| 361 | Ga0501031_0124020 | |||
| 362 | Ga0501032_0040486 | |||
| 363 | Ga0501032_0098990 | |||
| 364 | Ga0501034_0003155 | |||
| 365 | Ga0501036_0004527 | |||
| 366 | Ga0501036_0014135 | |||
| 367 | Ga0501038_0000188 | |||
| 368 | Ga0501038_0118689 | |||
| 369 | Ga0501039_0000619 | |||
| 370 | Ga0501039_0060995 | |||
| 371 | Ga0501040_0000115 | |||
| 372 | Ga0501040_0010677 | |||
| 373 | Ga0501041_0000088 | |||
| 374 | Ga0501042_0000088 | |||
| 375 | Ga0501042_0010475 | |||
| 376 | Ga0501043_0008869 | |||
| 377 | Ga0501043_0023651 | |||
| 378 | Ga0501046_0038042 | |||
| 379 | Ga0501046_0051400 | |||
| 380 | Ga0501046_0222161 | |||
| 381 | Ga0501047_0002696 | |||
| 382 | Ga0501047_0055131 | |||
| 383 | Ga0501048_0002928 | |||
| 384 | Ga0501068_0006062 | |||
| 385 | Ga0501068_0074753 | |||
| 386 | Ga0501070_0130442 | |||
| 387 | Ga0501071_0001257 | |||
| 388 | Ga0501071_0001761 | |||
| 389 | Ga0501072_0000992 | |||
| 390 | Ga0501072_0189770 | |||
| 391 | Ga0501074_0002278 | |||
| 392 | Ga0501074_0143073 | |||
| 393 | Ga0501075_0001264 | |||
| 394 | Ga0501075_0142931 | |||
| 395 | Ga0501076_0000602 | |||
| 396 | Ga0501076_0087019 | |||
| 397 | Ga0501077_0008296 | |||
| 398 | Ga0501077_0023880 | |||
| 399 | Ga0501079_0000907 | |||
| 400 | Ga0501080_0003490 | |||
| 401 | Ga0501080_0016695 | |||
| 402 | Ga0501080_0146011 | |||
| 403 | Ga0501081_0003133 | |||
| 404 | Ga0501081_0011874 | |||
| 405 | Ga0501083_0051919 | |||
| 406 | Ga0501083_0057143 | |||
| 407 | Ga0501035_0040711 | |||
| 408 | Ga0501044_0125326 | |||
| 409 | Ga0501045_0000351 | |||
| 410 | nmdc:mga05p37_54487_c1 | |||
| 411 | nmdc:mga09592_22433_c1 | |||
| 412 | nmdc:mga0n895_2497_c1 | |||
| 413 | nmdc:mga0rr50_1751_c1 | |||
| 414 | nmdc:mga08x19_104269_c1 | |||
| 415 | nmdc:mga08x19_7112_c1 | |||
| 416 | nmdc:mga08x19_76116_c1 | |||
| 417 | nmdc:mga0a205_43496_c1 | |||
| 418 | Ga0495601_0044938 | |||
| 419 | Ga0495619_0004475 | |||
| 420 | Ga0495619_0031468 | |||
| 421 | Ga0501084_0004006 | |||
| 422 | Ga0501084_0033737 | |||
| 423 | Ga0501082_0002343 | |||
| 424 | Ga0501082_0198037 | |||
| 425 | Ga0530510_0000464 | |||
| 426 | Ga0530510_0012482 | |||
| 427 | 2623590296 | |||
| 428 | 2753271546 | |||
| 429 | 2880490967 | |||
| 430 | 2891563748 | |||
| 431 | 2895451183 | |||
| 432 | 2917740287 | |||
| 433 | 8055070956 | |||
| 434 | 8055173350 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 6am9-assembly2.cif.gz_D | engineered tryptophan synthase b-subunit from pyrococcus furiosus, pftrpb2b9, with ser-bound in a predominantly closed state. | 0.9737 | 16 | 390 |
| 2trs-assembly1.cif.gz_B | crystal structures of mutant (betak87t) tryptophan synthase alpha2 beta2 complex with ligands bound to the active sites of the alpha and beta subunits reveal ligand-induced conformational changes | 0.9731 | 16 | 390 |
| 6cut-assembly1.cif.gz_A | engineered holo trpb from pyrococcus furiosus, pftrpb7e6 with (2s,3s)-isopropylserine bound as the external aldimine | 0.9725 | 16 | 390 |
| 5vm5-assembly2.cif.gz_D | engineered tryptophan synthase b-subunit from pyrococcus furiosus, pftrpb2b9, with ser bound | 0.9694 | 16 | 390 |
| 7rnp-assembly2.cif.gz_B | engineered tryptophan synthase b-subunit from pyrococcus furiosus, pftrpb2b9_h275e with 4-cl-trp non-covalently bound | 0.966 | 16 | 389 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_P43283_44_197_3.60.21.10 | Alpha Beta;4-Layer Sandwich;Purple Acid Phosphatase; chain A, domain 2;Metallo-dependent phosphatases | 0.9878 | 61 | 206 | 3.60.21.10 |
| af_P14671_91_282_3.40.50.1100 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; | 0.9872 | 26 | 210 | 3.40.50.1100 |
| af_Q60179_69_392_3.40.50.1100 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; | 0.9735 | 65 | 383 | 3.40.50.1100 |
| 2rhgB01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; | 0.9726 | 20 | 211 | 3.40.50.1100 |
| af_Q60179_69_392_3.40.50.1100 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; | 0.9557 | 65 | 383 | 3.40.50.1100 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A317YN28-F1-model_v4 | tryptophan synthase (EC 4.2.1.20) | 1.001 | 110 | 212 |
GO:0004834
GO:0005737 |
| AF-A0A7S0MB55-F1-model_v4 | Tryptophan synthase (EC 4.2.1.20) | 0.9928 | 20 | 226 |
GO:0004834
GO:0005737 GO:0006568 |
| AF-A0A2N8GT80-F1-model_v4 | deleted | 0.9909 | 86 | 195 |
|
| AF-A0A4V6ME42-F1-model_v4 | Tryptophan synthase beta chain (EC 4.2.1.20) | 0.9906 | 10 | 389 |
GO:0003677
GO:0003700 GO:0004834 GO:0005737 GO:0006568 |
| AF-A0A538HQA8-F1-model_v4 | tryptophan synthase (EC 4.2.1.20) | 0.989 | 19 | 332 |
GO:0004834
GO:0005737 GO:0006568 |