F325287

General Info

Members Datasets Scaffolds Average Seq Length
214 141 213 379

Family's Representative Sequence

Representative Sequence 3300025939|Ga0207665_10034403|Ga0207665_100344032
Length 398
Sequence VSTSAERLEFRNVATVRELAHRLAELADRPMAVMHVCGSHEQAIARFGLRAVFPENLDVIMGPGCPVCVTDLPEVDEAVVLAKQGVHIASYGDMLRVPGTVQSLTDAQSDGAKIHIVYSPRQAVELAREMPDEEVVFFASGFETTAVATAAIIVDPDLPKNFSVLSAHKYIPPVMEIVAEMPQTRVEGFLAAGHAATITGWGVFEKFVERHKLPVVVAGFEPADILAGLVELTQLVRDRTPRVVNMFPRCVTKEGNLPAQRELWRVFRTIGGQWRGIAHIPNGNLRIRDEWSHVDARERFPIDLTTLWDYAPPRLAADCICGDIMSGIASPKDCKLFGNACLPDTPVGACMVSTEGTCRIWQQYGGRPNLSIEPSPRVRGEGGRRPDEGNSTNSGGIA

Samples

Sample ID Description Type Environment
1 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
2 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
11 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
12 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
19 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
20 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
21 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
22 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
28 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
29 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
31 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
33 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
34 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
35 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
36 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
37 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
38 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
39 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
40 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
66 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
67 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
68 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
69 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
70 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
71 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
72 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
73 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
74 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
75 3300034817 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1 Metagenome Rhizosphere
76 3300034819 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1 Metagenome Rhizosphere
77 3300034957 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 Metagenome Rhizosphere
78 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
79 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
80 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
81 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
82 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
83 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
84 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
85 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
86 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
87 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
88 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
89 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
90 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
91 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
92 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
93 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
94 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
95 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
96 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
97 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
98 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
99 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
100 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
101 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
102 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
103 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
104 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
105 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
106 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
107 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
108 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
109 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
121 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
122 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
123 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
124 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
125 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
126 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
127 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
128 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
129 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
130 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
131 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
132 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
133 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
134 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
135 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
136 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
137 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
138 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
139 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
140 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
141 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.47
Nodule 0
Rhizoplane 2.8
Rhizosphere 96.26
Stem 0
Stem Tuber 0
Unclassified 0.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065712_10079761 3300005290 Bacteria 3182
2 Ga0065707_10084219 3300005295 Bacteria 7504
3 Ga0070683_100000084 3300005329 Bacteria 64212
4 Ga0070690_100193546 3300005330 Unclassified 1411
5 Ga0070670_100008488 3300005331 Bacteria 8761
6 Ga0070689_100002074 3300005340 Bacteria 13014
7 Ga0070687_100004047 3300005343 Bacteria 5790
8 Ga0070669_100013201 3300005353 Bacteria 5872
9 Ga0070675_100000268 3300005354 Bacteria 34283
10 Ga0070675_100000325 3300005354 Bacteria 32228
11 Ga0070675_100012990 3300005354 Bacteria 6539
12 Ga0070688_100013777 3300005365 Bacteria 4570
13 Ga0070688_100072775 3300005365 Bacteria 2203
14 Ga0070700_100000020 3300005441 Bacteria 135275
15 Ga0070694_100003291 3300005444 Bacteria 9660
16 Ga0070698_100000463 3300005471 Bacteria 42985
17 Ga0070699_100222290 3300005518 Bacteria 1683
18 Ga0070684_100001712 3300005535 Bacteria 15975
19 Ga0070672_100025224 3300005543 Bacteria 4407
20 Ga0068855_100318767 3300005563 Bacteria 1719
21 Ga0070664_100082042 3300005564 Bacteria 2780
22 Ga0068857_100018435 3300005577 Bacteria 6123
23 Ga0068854_100002086 3300005578 Bacteria 12254
24 Ga0070702_100000514 3300005615 Bacteria 13931
25 Ga0068859_100000356 3300005617 Bacteria 45708
26 Ga0068859_100014395 3300005617 Bacteria 7937
27 Ga0068859_100039994 3300005617 Bacteria 4706
28 Ga0068863_100159384 3300005841 Bacteria 2161
29 Ga0068858_100032655 3300005842 Bacteria 4833
30 Ga0068860_100004455 3300005843 Bacteria 14290
31 Ga0068860_100118457 3300005843 Bacteria 2535
32 Ga0068862_100001145 3300005844 Bacteria 25114
33 Ga0068862_100036056 3300005844 Bacteria 4190
34 Ga0068862_100063813 3300005844 Bacteria 3170
35 Ga0075434_100158376 3300006871 Bacteria 2284
36 Ga0075429_100083839 3300006880 Bacteria 2778
37 Ga0097620_100000356 3300006931 Bacteria 45708
38 Ga0097620_100014395 3300006931 Bacteria 7937
39 Ga0097620_100039993 3300006931 Bacteria 4706
40 Ga0075435_100008463 3300007076 Bacteria 7383
41 Ga0111539_10090852 3300009094 Bacteria 3588
42 Ga0105245_10000112 3300009098 Bacteria 78964
43 Ga0105245_10356191 3300009098 Bacteria 1451
44 Ga0105249_10139611 3300009553 Bacteria 2322
45 Ga0105239_10194838 3300010375 Bacteria 2269
46 Ga0105239_10431113 3300010375 Bacteria 1494
47 Ga0157378_10000109 3300013297 Bacteria 78488
48 Ga0157378_10195148 3300013297 Bacteria 1912
49 Ga0163162_10060459 3300013306 Bacteria 3824
50 Ga0163162_10478104 3300013306 Bacteria 1377
51 Ga0157375_10000247 3300013308 Bacteria 49223
52 Ga0157377_10013420 3300014745 Bacteria 4146
53 Ga0157379_10092993 3300014968 Bacteria 2705
54 Ga0207643_10074804 3300025908 Unclassified 1954
55 Ga0207681_10013080 3300025923 Bacteria 5132
56 Ga0207650_10000026 3300025925 Bacteria 264152
57 Ga0207659_10000108 3300025926 Bacteria 48905
58 Ga0207659_10000952 3300025926 Bacteria 17318
59 Ga0207659_10012227 3300025926 Bacteria 5449
60 Ga0207687_10000626 3300025927 Bacteria 23854
61 Ga0207670_10002498 3300025936 Bacteria 9661
62 Ga0207665_10034403 3300025939 Bacteria 3362
63 Ga0207691_10079130 3300025940 Bacteria 2959
64 Ga0207691_10110083 3300025940 Unclassified 2450
65 Ga0207689_10007376 3300025942 Bacteria 9644
66 Ga0207661_10000037 3300025944 Bacteria 148458
67 Ga0207679_10111555 3300025945 Bacteria 2160
68 Ga0207712_10151847 3300025961 Bacteria 1790
69 Ga0207640_10007527 3300025981 Bacteria 6014
70 Ga0207703_10040724 3300026035 Unclassified 3720
71 Ga0207708_10000021 3300026075 Bacteria 186005
72 Ga0207641_10343361 3300026088 Unclassified 1421
73 Ga0207674_10009956 3300026116 Bacteria 10817
74 Ga0209995_1001716 3300027471 Bacteria 3408
75 Ga0209999_1003835 3300027543 Bacteria 2702
76 Ga0209983_1000887 3300027665 Bacteria 6581
77 Ga0209971_1000441 3300027682 Bacteria 11057
78 Ga0209966_1014028 3300027695 Bacteria 1491
79 Ga0209974_10001701 3300027876 Bacteria 7974
80 Ga0268265_10049254 3300028380 Bacteria 3167
81 Ga0268264_10005093 3300028381 Bacteria 11137
82 Ga0268264_10040401 3300028381 Bacteria 3854
83 Ga0265330_10006260 3300031235 Bacteria 5884
84 Ga0265320_10037656 3300031240 Bacteria 2435
85 Ga0265339_10069316 3300031249 Bacteria 1883
86 Ga0307509_10131211 3300031507 Bacteria 2461
87 Ga0265313_10013388 3300031595 Bacteria 4925
88 Ga0265342_10107631 3300031712 Bacteria 1581
89 Ga0307407_10012683 3300031903 Bacteria 4061
90 Ga0307409_100010666 3300031995 Bacteria 5733
91 Ga0307414_10090529 3300032004 Bacteria 2271
92 Ga0373930_0002258 3300034816 Bacteria 2970
93 Ga0373948_0001365 3300034817 Bacteria 3359
94 Ga0373958_0001874 3300034819 Bacteria 2884
95 Ga0373938_0001180 3300034957 Bacteria 4216
96 Ga0373928_0005196 3300035084 Bacteria 2484
97 Ga0373929_0000910 3300035085 Bacteria 5759
98 Ga0373940_0006058 3300035088 Bacteria 2658
99 Ga0373949_0006830 3300035090 Bacteria 2506
100 Ga0373923_0003443 3300035111 Bacteria 5073
101 Ga0373932_0006327 3300035112 Bacteria 2800
102 Ga0373939_0015043 3300035114 Bacteria 2017
103 Ga0373941_0001730 3300035115 Bacteria 4691
104 Ga0373960_0003422 3300035121 Bacteria 3591
105 Ga0373942_0004047 3300035207 Bacteria 3420
106 Ga0373961_0002313 3300035241 Bacteria 4977
107 Ga0373961_0011551 3300035241 Bacteria 2193
108 Ga0373962_0016299 3300035242 Bacteria 1915
109 Ga0373931_0005902 3300035691 Bacteria 5693
110 Ga0373937_0003956 3300036401 Bacteria 12528
111 Ga0451577_0000553 3300042876 Bacteria 61075
112 Ga0451577_0035974 3300042876 Bacteria 4460
113 Ga0451577_0069768 3300042876 Bacteria 3134
114 Ga0451577_0213221 3300042876 Bacteria 1744
115 Ga0451577_0252205 3300042876 Bacteria 1597
116 Ga0451577_0274895 3300042876 Bacteria 1526
117 Ga0453683_0000525 3300044673 Bacteria 43051
118 Ga0453683_0004164 3300044673 Bacteria 10357
119 Ga0453683_0005076 3300044673 Bacteria 9236
120 Ga0453683_0025266 3300044673 Bacteria 3775
121 Ga0453683_0042169 3300044673 Bacteria 2865
122 Ga0453684_0000362 3300044712 Bacteria 187378
123 Ga0453684_0001091 3300044712 Bacteria 85722
124 Ga0453684_0001576 3300044712 Bacteria 63117
125 Ga0453684_0007571 3300044712 Bacteria 19913
126 Ga0453684_0022758 3300044712 Bacteria 9279
127 Ga0453684_0023094 3300044712 Bacteria 9185
128 Ga0453684_0093453 3300044712 Bacteria 3704
129 Ga0453684_0138327 3300044712 Bacteria 2912
130 Ga0453684_0206895 3300044712 Bacteria 2283
131 Ga0453684_0218192 3300044712 Bacteria 2211
132 Ga0453684_0261128 3300044712 Bacteria 1983
133 Ga0453684_0284743 3300044712 Bacteria 1883
134 Ga0453684_0388520 3300044712 Bacteria 1565
135 Ga0453684_0408370 3300044712 Bacteria 1519
136 Ga0451576_0001176 3300045051 Bacteria 46924
137 Ga0451576_0062443 3300045051 Bacteria 3883
138 Ga0451576_0077912 3300045051 Bacteria 3449
139 Ga0451576_0128270 3300045051 Bacteria 2643
140 Ga0451576_0189949 3300045051 Bacteria 2145
141 Ga0451576_0284599 3300045051 Bacteria 1728
142 Ga0495580_0001557 3300046472 Bacteria 20185
143 Ga0495594_0040531 3300046499 Bacteria 2549
144 Ga0495608_0000150 3300046511 Bacteria 50307
145 Ga0495598_0018652 3300046537 Bacteria 1806
146 Ga0495659_0008345 3300046664 Bacteria 3296
147 Ga0495669_0002866 3300046684 Bacteria 7075
148 Ga0495670_0017797 3300046691 Bacteria 3500
149 Ga0496102_0359188 3300048905 Bacteria 1371
150 Ga0496103_0051484 3300048906 Bacteria 2549
151 Ga0496107_0113519 3300048910 Bacteria 1993
152 Ga0496109_0150797 3300048912 Bacteria 2176
153 Ga0496110_0226528 3300048913 Bacteria 1700
154 Ga0496113_0214732 3300048916 Bacteria 1532
155 Ga0501031_0017689 3300049568 Bacteria 4635
156 Ga0501031_0295599 3300049568 Bacteria 1050
157 Ga0501033_0080853 3300049570 Bacteria 2384
158 Ga0501036_0013096 3300049572 Bacteria 6891
159 Ga0501036_0016609 3300049572 Bacteria 6147
160 Ga0501038_0163037 3300049574 Archaea 1810
161 Ga0501039_0033112 3300049575 Bacteria 3987
162 Ga0501039_0243394 3300049575 Bacteria 1414
163 Ga0501040_0225253 3300049576 Bacteria 1334
164 Ga0501041_0067219 3300049577 Bacteria 2197
165 Ga0501042_0031173 3300049578 Archaea 3772
166 Ga0501042_0088724 3300049578 Bacteria 2219
167 Ga0501043_0183484 3300049579 Archaea 1630
168 Ga0501046_0027787 3300049580 Bacteria 4612
169 Ga0501048_0090734 3300049582 Archaea 2155
170 Ga0501071_0076880 3300049587 Bacteria 2438
171 Ga0501071_0287556 3300049587 Bacteria 1245
172 Ga0501071_0341644 3300049587 Bacteria 1138
173 Ga0501072_0182216 3300049588 Bacteria 1675
174 Ga0501073_0000393 3300049589 Bacteria 29670
175 Ga0501073_0011332 3300049589 Bacteria 6521
176 Ga0501075_0017106 3300049591 Bacteria 5234
177 Ga0501075_0037143 3300049591 Bacteria 3638
178 Ga0501075_0065060 3300049591 Bacteria 2751
179 Ga0501076_0018263 3300049592 Bacteria 5344
180 Ga0501076_0022828 3300049592 Bacteria 4813
181 Ga0501077_0200603 3300049593 Bacteria 1267
182 Ga0501079_0070470 3300049741 Bacteria 2700
183 Ga0501080_0030343 3300049742 Bacteria 5036
184 Ga0501080_0353224 3300049742 Bacteria 1327
185 Ga0501081_0017225 3300049743 Bacteria 4780
186 Ga0501081_0024067 3300049743 Archaea 4087
187 Ga0501081_0085461 3300049743 Bacteria 2214
188 Ga0501081_0253454 3300049743 Bacteria 1285
189 Ga0501045_0025150 3300049824 Bacteria 4277
190 Ga0501045_0044375 3300049824 Bacteria 3238
191 Ga0501045_0213445 3300049824 Bacteria 1437
192 nmdc:mga09592_190701_c1 3300050508 Bacteria 1774
193 nmdc:mga09592_20103_c1 3300050508 Bacteria 5487
194 nmdc:mga09592_78065_c1 3300050508 Bacteria 2817
195 nmdc:mga0n895_238814_c1 3300050512 Bacteria 1844
196 nmdc:mga0n895_25057_c1 3300050512 Bacteria 5631
197 nmdc:mga0rr50_4581_c1 3300050513 Bacteria 8138
198 nmdc:mga0rr50_79531_c1 3300050513 Bacteria 2525
199 nmdc:mga0a205_208270_c1 3300050515 Bacteria 1844
200 Ga0500566_0158135 3300053094 Bacteria 1184
201 Ga0501084_0040445 3300054114 Bacteria 3900
202 Ga0590071_000093 3300059421 Bacteria 24885
203 Ga0590074_001352 3300059423 Bacteria 3923
204 Ga0590075_000035 3300059424 Bacteria 35738
205 Ga0590077_000278 3300059426 Bacteria 14559
206 Ga0501082_0109162 3300060353 Bacteria 2395
207 Ga0501082_0183092 3300060353 Bacteria 1822
208 Ga0501082_0273102 3300060353 Bacteria 1471
209 Ga0530510_0003846 3300061734 Bacteria 10343
210 Ga0530510_0049920 3300061734 Bacteria 3022
211 Ga0530510_0105977 3300061734 Bacteria 2057
212 Ga0530510_0108111 3300061734 Bacteria 2036
213 Ga0530510_0232370 3300061734 Bacteria 1372

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300061734 Ga0530510_0232370 Ga0530510_0232370_13_939 306
2 3300053094 Ga0500566_0158135 Ga0500566_0158135_26_1054 337
3 3300048905 Ga0496102_0359188 Ga0496102_0359188_327_1343 338
4 3300049568 Ga0501031_0295599 Ga0501031_0295599_20_1039 339
5 3300013297 Ga0157378_10195148 Ga0157378_101951484 341
6 3300049574 Ga0501038_0163037 Ga0501038_0163037_611_1648 344
7 3300049570 Ga0501033_0080853 Ga0501033_0080853_53_1102 347
8 3300049575 Ga0501039_0033112 Ga0501039_0033112_39_1088 347
9 3300049591 Ga0501075_0017106 Ga0501075_0017106_80_1129 347
10 3300006880 Ga0075429_100083839 Ga0075429_1000838393 348
11 3300050508 nmdc:mga09592_20103_c1 nmdc:mga09592_20103_c1_1338_2468 348
12 3300005343 Ga0070687_100004047 Ga0070687_1000040476 349
13 3300049591 Ga0501075_0065060 Ga0501075_0065060_417_1562 350
14 3300006871 Ga0075434_100158376 Ga0075434_1001583762 355
15 3300050512 nmdc:mga0n895_238814_c1 nmdc:mga0n895_238814_c1_517_1623 355
16 3300046472 Ga0495580_0001557 Ga0495580_0001557_5529_6671 358
17 3300049587 Ga0501071_0341644 Ga0501071_0341644_31_1107 358
18 3300035111 Ga0373923_0003443 Ga0373923_0003443_2390_3523 359
19 3300046511 Ga0495608_0000150 Ga0495608_0000150_40508_41641 359
20 3300005615 Ga0070702_100000514 Ga0070702_1000005146 361
21 3300044712 Ga0453684_0261128 Ga0453684_0261128_803_1939 361
22 3300049589 Ga0501073_0011332 Ga0501073_0011332_4348_5499 363
23 3300046537 Ga0495598_0018652 Ga0495598_0018652_117_1289 367
24 3300046664 Ga0495659_0008345 Ga0495659_0008345_2004_3176 367
25 3300046684 Ga0495669_0002866 Ga0495669_0002866_683_1855 367
26 3300046691 Ga0495670_0017797 Ga0495670_0017797_953_2125 367
27 3300036401 Ga0373937_0003956 Ga0373937_0003956_6997_8118 370
28 3300049589 Ga0501073_0000393 Ga0501073_0000393_1972_3087 371
29 3300049742 Ga0501080_0030343 Ga0501080_0030343_1122_2237 371
30 3300005329 Ga0070683_100000084 Ga0070683_10000008419 372
31 3300005331 Ga0070670_100008488 Ga0070670_1000084887 372
32 3300005441 Ga0070700_100000020 Ga0070700_100000020121 372
33 3300005535 Ga0070684_100001712 Ga0070684_10000171216 372
34 3300005578 Ga0068854_100002086 Ga0068854_1000020863 372
35 3300013297 Ga0157378_10000109 Ga0157378_1000010915 372
36 3300013308 Ga0157375_10000247 Ga0157375_1000024736 372
37 3300025925 Ga0207650_10000026 Ga0207650_1000002659 372
38 3300025944 Ga0207661_10000037 Ga0207661_1000003719 372
39 3300025981 Ga0207640_10007527 Ga0207640_100075276 372
40 3300026075 Ga0207708_10000021 Ga0207708_1000002114 372
41 3300031903 Ga0307407_10012683 Ga0307407_100126835 372
42 3300031995 Ga0307409_100010666 Ga0307409_1000106665 372
43 3300032004 Ga0307414_10090529 Ga0307414_100905292 372
44 3300005354 Ga0070675_100000325 Ga0070675_10000032529 373
45 3300005471 Ga0070698_100000463 Ga0070698_10000046313 373
46 3300005577 Ga0068857_100018435 Ga0068857_1000184355 373
47 3300009098 Ga0105245_10000112 Ga0105245_1000011254 373
48 3300009098 Ga0105245_10356191 Ga0105245_103561912 373
49 3300010375 Ga0105239_10431113 Ga0105239_104311132 373
50 3300013306 Ga0163162_10478104 Ga0163162_104781042 373
51 3300014745 Ga0157377_10013420 Ga0157377_100134203 373
52 3300025926 Ga0207659_10000952 Ga0207659_1000095213 373
53 3300025927 Ga0207687_10000626 Ga0207687_1000062619 373
54 3300026116 Ga0207674_10009956 Ga0207674_100099566 373
55 3300031595 Ga0265313_10013388 Ga0265313_100133883 373
56 3300005518 Ga0070699_100222290 Ga0070699_1002222902 374
57 3300005841 Ga0068863_100159384 Ga0068863_1001593842 374
58 3300005843 Ga0068860_100118457 Ga0068860_1001184571 374
59 3300005844 Ga0068862_100063813 Ga0068862_1000638133 374
60 3300007076 Ga0075435_100008463 Ga0075435_1000084636 374
61 3300010375 Ga0105239_10194838 Ga0105239_101948382 374
62 3300014968 Ga0157379_10092993 Ga0157379_100929932 374
63 3300026088 Ga0207641_10343361 Ga0207641_103433612 374
64 3300028380 Ga0268265_10049254 Ga0268265_100492542 374
65 3300050513 nmdc:mga0rr50_4581_c1 nmdc:mga0rr50_4581_c1_3743_4900 374
66 3300005617 Ga0068859_100039994 Ga0068859_1000399944 375
67 3300005844 Ga0068862_100036056 Ga0068862_1000360564 375
68 3300006931 Ga0097620_100039993 Ga0097620_1000399934 375
69 3300009553 Ga0105249_10139611 Ga0105249_101396112 375
70 3300025939 Ga0207665_10034403 Ga0207665_100344032 375
71 3300025961 Ga0207712_10151847 Ga0207712_101518472 375
72 3300031240 Ga0265320_10037656 Ga0265320_100376562 375
73 3300031249 Ga0265339_10069316 Ga0265339_100693162 375
74 3300031507 Ga0307509_10131211 Ga0307509_101312112 375
75 3300031712 Ga0265342_10107631 Ga0265342_101076312 375
76 3300034816 Ga0373930_0002258 Ga0373930_0002258_902_2032 375
77 3300034817 Ga0373948_0001365 Ga0373948_0001365_263_1393 375
78 3300034819 Ga0373958_0001874 Ga0373958_0001874_1027_2157 375
79 3300034957 Ga0373938_0001180 Ga0373938_0001180_2469_3599 375
80 3300035084 Ga0373928_0005196 Ga0373928_0005196_350_1480 375
81 3300035085 Ga0373929_0000910 Ga0373929_0000910_4595_5725 375
82 3300035088 Ga0373940_0006058 Ga0373940_0006058_279_1409 375
83 3300035090 Ga0373949_0006830 Ga0373949_0006830_884_2014 375
84 3300035112 Ga0373932_0006327 Ga0373932_0006327_884_2014 375
85 3300035114 Ga0373939_0015043 Ga0373939_0015043_306_1436 375
86 3300035115 Ga0373941_0001730 Ga0373941_0001730_690_1820 375
87 3300035121 Ga0373960_0003422 Ga0373960_0003422_1281_2411 375
88 3300035207 Ga0373942_0004047 Ga0373942_0004047_826_1956 375
89 3300035241 Ga0373961_0002313 Ga0373961_0002313_2969_4099 375
90 3300035242 Ga0373962_0016299 Ga0373962_0016299_728_1858 375
91 3300035691 Ga0373931_0005902 Ga0373931_0005902_4167_5297 375
92 3300044673 Ga0453683_0000525 Ga0453683_0000525_23760_24890 375
93 3300044712 Ga0453684_0218192 Ga0453684_0218192_370_1500 375
94 3300045051 Ga0451576_0128270 Ga0451576_0128270_1096_2226 375
95 3300045051 Ga0451576_0189949 Ga0451576_0189949_776_1906 375
96 3300050508 nmdc:mga09592_190701_c1 nmdc:mga09592_190701_c1_563_1696 375
97 3300050512 nmdc:mga0n895_25057_c1 nmdc:mga0n895_25057_c1_1137_2270 375
98 3300044673 Ga0453683_0000525 Ga0453683_0000525_20720_21853 376
99 3300044673 Ga0453683_0005076 Ga0453683_0005076_5409_6542 376
100 3300044712 Ga0453684_0284743 Ga0453684_0284743_259_1392 376
101 3300045051 Ga0451576_0001176 Ga0451576_0001176_2506_3639 376
102 3300059421 Ga0590071_000093 Ga0590071_000093_18570_19718 376
103 3300059423 Ga0590074_001352 Ga0590074_001352_523_1671 376
104 3300059424 Ga0590075_000035 Ga0590075_000035_32252_33400 376
105 3300059426 Ga0590077_000278 Ga0590077_000278_12975_14123 376
106 3300044712 Ga0453684_0007571 Ga0453684_0007571_9461_10597 377
107 3300044712 Ga0453684_0023094 Ga0453684_0023094_5444_6580 377
108 3300044712 Ga0453684_0206895 Ga0453684_0206895_923_2059 377
109 3300044712 Ga0453684_0388520 Ga0453684_0388520_55_1191 377
110 3300049587 Ga0501071_0287556 Ga0501071_0287556_18_1166 377
111 3300005353 Ga0070669_100013201 Ga0070669_1000132011 378
112 3300005444 Ga0070694_100003291 Ga0070694_1000032917 378
113 3300005563 Ga0068855_100318767 Ga0068855_1003187673 378
114 3300005844 Ga0068862_100001145 Ga0068862_10000114518 378
115 3300013306 Ga0163162_10060459 Ga0163162_100604594 378
116 3300025923 Ga0207681_10013080 Ga0207681_100130802 378
117 3300025940 Ga0207691_10079130 Ga0207691_100791303 378
118 3300025942 Ga0207689_10007376 Ga0207689_100073766 378
119 3300027471 Ga0209995_1001716 Ga0209995_10017163 378
120 3300027543 Ga0209999_1003835 Ga0209999_10038351 378
121 3300027665 Ga0209983_1000887 Ga0209983_10008877 378
122 3300027682 Ga0209971_1000441 Ga0209971_10004416 378
123 3300027695 Ga0209966_1014028 Ga0209966_10140282 378
124 3300027876 Ga0209974_10001701 Ga0209974_100017014 378
125 3300028381 Ga0268264_10040401 Ga0268264_100404013 378
126 3300031235 Ga0265330_10006260 Ga0265330_100062602 378
127 3300042876 Ga0451577_0000553 Ga0451577_0000553_53232_54371 378
128 3300042876 Ga0451577_0252205 Ga0451577_0252205_21_1160 378
129 3300044673 Ga0453683_0004164 Ga0453683_0004164_8429_9568 378
130 3300044712 Ga0453684_0000362 Ga0453684_0000362_133008_134147 378
131 3300045051 Ga0451576_0077912 Ga0451576_0077912_1789_2928 378
132 3300048906 Ga0496103_0051484 Ga0496103_0051484_1008_2150 378
133 3300048910 Ga0496107_0113519 Ga0496107_0113519_789_1931 378
134 3300048913 Ga0496110_0226528 Ga0496110_0226528_26_1168 378
135 3300049572 Ga0501036_0016609 Ga0501036_0016609_1075_2217 378
136 3300049577 Ga0501041_0067219 Ga0501041_0067219_637_1779 378
137 3300049591 Ga0501075_0037143 Ga0501075_0037143_1964_3106 378
138 3300049741 Ga0501079_0070470 Ga0501079_0070470_91_1233 378
139 3300049824 Ga0501045_0044375 Ga0501045_0044375_489_1631 378
140 3300050508 nmdc:mga09592_78065_c1 nmdc:mga09592_78065_c1_1189_2328 378
141 3300050515 nmdc:mga0a205_208270_c1 nmdc:mga0a205_208270_c1_91_1233 378
142 3300061734 Ga0530510_0003846 Ga0530510_0003846_607_1746 378
143 3300061734 Ga0530510_0049920 Ga0530510_0049920_1330_2469 378
144 3300042876 Ga0451577_0035974 Ga0451577_0035974_2945_4087 379
145 3300042876 Ga0451577_0069768 Ga0451577_0069768_1191_2333 379
146 3300044673 Ga0453683_0025266 Ga0453683_0025266_1378_2520 379
147 3300044673 Ga0453683_0042169 Ga0453683_0042169_96_1238 379
148 3300044712 Ga0453684_0001576 Ga0453684_0001576_17641_18783 379
149 3300044712 Ga0453684_0022758 Ga0453684_0022758_5670_6815 379
150 3300044712 Ga0453684_0093453 Ga0453684_0093453_1742_2884 379
151 3300044712 Ga0453684_0138327 Ga0453684_0138327_554_1696 379
152 3300044712 Ga0453684_0408370 Ga0453684_0408370_261_1403 379
153 3300045051 Ga0451576_0284599 Ga0451576_0284599_176_1318 379
154 3300049743 Ga0501081_0017225 Ga0501081_0017225_637_1779 379
155 3300049743 Ga0501081_0253454 Ga0501081_0253454_110_1252 379
156 3300050513 nmdc:mga0rr50_79531_c1 nmdc:mga0rr50_79531_c1_436_1602 379
157 3300060353 Ga0501082_0109162 Ga0501082_0109162_206_1348 379
158 3300060353 Ga0501082_0183092 Ga0501082_0183092_435_1580 379
159 3300061734 Ga0530510_0108111 Ga0530510_0108111_22_1164 379
160 3300042876 Ga0451577_0213221 Ga0451577_0213221_496_1650 380
161 3300046499 Ga0495594_0040531 Ga0495594_0040531_438_1586 380
162 3300049743 Ga0501081_0085461 Ga0501081_0085461_606_1760 380
163 3300044712 Ga0453684_0001091 Ga0453684_0001091_68081_69232 381
164 3300049592 Ga0501076_0018263 Ga0501076_0018263_1048_2217 381
165 3300042876 Ga0451577_0274895 Ga0451577_0274895_90_1277 383
166 3300045051 Ga0451576_0062443 Ga0451576_0062443_1333_2520 383
167 3300005295 Ga0065707_10084219 Ga0065707_100842193 384
168 3300049575 Ga0501039_0243394 Ga0501039_0243394_151_1308 384
169 3300049578 Ga0501042_0031173 Ga0501042_0031173_2308_3465 384
170 3300049579 Ga0501043_0183484 Ga0501043_0183484_191_1348 384
171 3300049580 Ga0501046_0027787 Ga0501046_0027787_2136_3293 384
172 3300049582 Ga0501048_0090734 Ga0501048_0090734_110_1267 384
173 3300049743 Ga0501081_0024067 Ga0501081_0024067_913_2070 384
174 3300049824 Ga0501045_0025150 Ga0501045_0025150_1794_2951 384
175 3300054114 Ga0501084_0040445 Ga0501084_0040445_569_1726 384
176 3300005330 Ga0070690_100193546 Ga0070690_1001935462 385
177 3300005340 Ga0070689_100002074 Ga0070689_10000207411 385
178 3300005354 Ga0070675_100000268 Ga0070675_10000026826 385
179 3300005365 Ga0070688_100013777 Ga0070688_1000137771 385
180 3300005543 Ga0070672_100025224 Ga0070672_1000252243 385
181 3300005617 Ga0068859_100000356 Ga0068859_10000035623 385
182 3300005842 Ga0068858_100032655 Ga0068858_1000326552 385
183 3300005843 Ga0068860_100004455 Ga0068860_1000044553 385
184 3300006931 Ga0097620_100000356 Ga0097620_10000035623 385
185 3300025908 Ga0207643_10074804 Ga0207643_100748042 385
186 3300025926 Ga0207659_10000108 Ga0207659_1000010821 385
187 3300025936 Ga0207670_10002498 Ga0207670_100024988 385
188 3300025940 Ga0207691_10110083 Ga0207691_101100832 385
189 3300026035 Ga0207703_10040724 Ga0207703_100407242 385
190 3300028381 Ga0268264_10005093 Ga0268264_100050935 385
191 3300049572 Ga0501036_0013096 Ga0501036_0013096_249_1412 385
192 3300049576 Ga0501040_0225253 Ga0501040_0225253_51_1214 385
193 3300049578 Ga0501042_0088724 Ga0501042_0088724_356_1519 385
194 3300049587 Ga0501071_0076880 Ga0501071_0076880_874_2037 385
195 3300049588 Ga0501072_0182216 Ga0501072_0182216_129_1292 385
196 3300049592 Ga0501076_0022828 Ga0501076_0022828_183_1346 385
197 3300049593 Ga0501077_0200603 Ga0501077_0200603_62_1225 385
198 3300049742 Ga0501080_0353224 Ga0501080_0353224_121_1284 385
199 3300049824 Ga0501045_0213445 Ga0501045_0213445_153_1316 385
200 3300060353 Ga0501082_0273102 Ga0501082_0273102_249_1412 385
201 3300061734 Ga0530510_0105977 Ga0530510_0105977_643_1806 385
202 3300049568 Ga0501031_0017689 Ga0501031_0017689_3357_4526 387
203 3300005290 Ga0065712_10079761 Ga0065712_100797613 388
204 3300005354 Ga0070675_100012990 Ga0070675_1000129907 388
205 3300005365 Ga0070688_100072775 Ga0070688_1000727752 388
206 3300005564 Ga0070664_100082042 Ga0070664_1000820423 388
207 3300005617 Ga0068859_100014395 Ga0068859_1000143954 388
208 3300006931 Ga0097620_100014395 Ga0097620_1000143954 388
209 3300009094 Ga0111539_10090852 Ga0111539_100908523 388
210 3300025926 Ga0207659_10012227 Ga0207659_100122276 388
211 3300025945 Ga0207679_10111555 Ga0207679_101115553 388
212 3300035241 Ga0373961_0011551 Ga0373961_0011551_587_1846 388
213 3300048912 Ga0496109_0150797 Ga0496109_0150797_885_2051 388
214 3300048916 Ga0496113_0214732 Ga0496113_0214732_138_1304 388

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01924

HypD

Hydrogenase formation hypA family

14

365

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
3vys-assembly1.cif.gz_B crystal structure of the hypc-hypd-hype complex (form i) 0.8989 8 370
3vys-assembly1.cif.gz_B crystal structure of the hypc-hypd-hype complex (form i) 0.8849 8 370
6znr-assembly1.cif.gz_E maeb pta domain r535a mutant 0.4046 15 213
1hgx-assembly1.cif.gz_B hypoxanthine-guanine-xanthine phosphoribosyltransferase (hgxprtase) 0.3732 20 68
6znk-assembly1.cif.gz_A maeb pta domain n718d mutant 0.3731 15 213
ID Description Score Start End Superfamily
3vyuB03 Special;Helix non-globular;Arc Repressor Mutant, subunit A; 0.9331 323 370 6.10.20.100
af_Q58400_104_253_3.40.50.11750 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HypD, alpha/beta domain 1 0.9211 115 261 3.40.50.11750
af_P24192_73_194_3.40.50.11740 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HypD, alpha/beta domain 2 0.9059 79 188 3.40.50.11740
af_Q58400_104_253_3.40.50.11750 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HypD, alpha/beta domain 1 0.8977 115 261 3.40.50.11750
3vytB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HypD, alpha/beta domain 2 0.8662 76 309 3.40.50.11740
ID Description Score Start End GO Terms
AF-A0A257UWM0-F1-model_v4 Hydrogenase formation protein HypD 0.978 41 375 GO:0005506
GO:0051539
GO:0051604
GO:0070025
AF-A0A257UWM0-F1-model_v4 Hydrogenase formation protein HypD 0.9752 41 375 GO:0005506
GO:0051539
GO:0051604
GO:0070025
AF-A0A7C6AGW8-F1-model_v4 Hydrogenase formation protein HypD 0.9712 86 267 GO:0005506
GO:0051539
GO:0051604
GO:0070025
AF-A0A6A9T187-F1-model_v4 Hydrogenase formation protein HypD 0.9667 11 375 GO:0005506
GO:0051539
GO:0051604
GO:0070025
AF-A0A661V2Z1-F1-model_v4 Hydrogenase formation protein HypD 0.9643 93 301 GO:0005506
GO:0051539
GO:0051604
GO:0070025

Feature Viewer

pLDDT pTM Quality
84.11 0.83 High
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Predicted Structure (AlphaFold2)

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