F324239

General Info

Members Datasets Scaffolds Average Seq Length
213 148 206 404

Family's Representative Sequence

Representative Sequence 3300033180|Ga0307510_10050323|Ga0307510_100503232
Length 486
Sequence MSRWPRLMVLRPIVFAIHLHPRCLRIRADVSEEAAQDVDRTRAEYTAAILCDEDPMHGYAKTQCRPRRILLSWLLDQRYRRWVKCLQAFKFELRPNGRQRQQMRCFAGSCRYVYNKGLALQKARFYAGESKLNYAGLCKLLTQWRSQTETLWLKEAPTHSLQQALKDLERAYMNFFAKRADLPRFKKKGRHESFRYPDPMQIKLDPMNSRLFLPKLGWLRYRNSRAILGLVKNVTVSRSCGRWFVSIQTERELEQPLPRGGAVGIDLGVVRFATLSDGTFYAPLNSFKRHAAALRKGQQAMCRKQKFSNNWRKAKERIQRIHARIGNARRDYLHKTSTAISQNHAMVCLEDLQVRNMSRSAAGTSENPGKHVRAKAGLNRSILDQGWFEFRRQLEYKLAWNGGSLILVPPQNTSRRCPQCNCVSARNRRTQERFHCIACGFEANADRVGAINILRAGHARCACGVSDSDRQQQEPTEAIQEQLRAA

Samples

Sample ID Description Type Environment
1 2600255292 Janthinobacterium lividum NFR18 Isolate Rhizoplane
2 2671180115 Cedecea sp. NFIX57 Isolate Rhizoplane
3 2791355137 Paraburkholderia piptadeniae STM7183 Isolate Unclassified
4 2863421361 Burkholderia cenocepacia CACua-24 Isolate Rhizosphere
5 2891670763 Buttiauxella sp. B2 Isolate Rhizosphere
6 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
7 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
8 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
9 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
10 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
11 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
12 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
13 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
16 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
33 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
34 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
35 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
41 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
42 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
43 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
46 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
47 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
48 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
51 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
52 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
53 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
54 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
55 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
56 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
57 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
58 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
59 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
87 3300028017 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 Metagenome Rhizosphere
88 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
91 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
92 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
93 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
94 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
95 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
96 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
97 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
98 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
99 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
100 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
101 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
102 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
103 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
104 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
105 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
106 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
107 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
108 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
109 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
110 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
111 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
112 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
113 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
114 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
115 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
116 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
117 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
118 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
119 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
120 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
121 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
122 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
123 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
124 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
125 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
126 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
127 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
128 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
129 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
130 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
131 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
132 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
133 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
134 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
135 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
136 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
137 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
140 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
142 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
143 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
144 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
145 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
146 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
147 640753048 Serratia proteamaculans 568 Isolate Endosphere
148 8020945358 Burkholderia sp. BE17 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.71
Metatranscriptomes 0
Isolates 3.29

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.63
Nodule 0.94
Rhizoplane 2.35
Rhizosphere 75.59
Stem 0
Stem Tuber 0
Unclassified 15.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25158J39367_1000922 3300002739 Bacteria 5500
2 JGI25159J45721_1001024 3300002987 Bacteria 12003
3 JGI25161J50226_1000353 3300003374 Bacteria 23885
4 Ga0055543_1002582 3300004625 Bacteria 5869
5 Ga0065165_1006774 3300005262 Bacteria 5864
6 Ga0070683_100354795 3300005329 Bacteria 1396
7 Ga0070682_100065647 3300005337 Bacteria 2307
8 Ga0070660_100116712 3300005339 Bacteria 2128
9 Ga0070671_100015613 3300005355 Bacteria 6136
10 Ga0070659_100217552 3300005366 Bacteria 1576
11 Ga0070667_100031697 3300005367 Bacteria 4406
12 Ga0070681_10024510 3300005458 Bacteria 6072
13 Ga0070679_100114001 3300005530 Bacteria 2688
14 Ga0070684_100044131 3300005535 Bacteria 3854
15 Ga0068853_100091825 3300005539 Bacteria 2671
16 Ga0070665_100060126 3300005548 Bacteria 3809
17 Ga0070665_100065990 3300005548 Bacteria 3630
18 Ga0068855_100208198 3300005563 Bacteria 2199
19 Ga0068855_100458660 3300005563 Bacteria 1390
20 Ga0070664_100117069 3300005564 Bacteria 2331
21 Ga0068857_100149292 3300005577 Bacteria 2117
22 Ga0068852_100076941 3300005616 Bacteria 2947
23 Ga0068859_100000248 3300005617 Bacteria 53199
24 Ga0068859_100000422 3300005617 Bacteria 42364
25 Ga0068863_100030192 3300005841 Bacteria 5178
26 Ga0068863_100039972 3300005841 Bacteria 4461
27 Ga0068858_100015550 3300005842 Bacteria 7156
28 Ga0068858_100020737 3300005842 Bacteria 6140
29 Ga0068860_100000461 3300005843 Bacteria 51002
30 Ga0068860_100000725 3300005843 Bacteria 37556
31 Ga0068860_100147594 3300005843 Bacteria 2263
32 Ga0068862_100174009 3300005844 Bacteria 1928
33 Ga0097620_100000248 3300006931 Bacteria 53199
34 Ga0097620_100000422 3300006931 Bacteria 42364
35 Ga0079104_1001205 3300006946 Bacteria 18398
36 Ga0099794_10034713 3300007265 Bacteria 2378
37 Ga0099795_10018598 3300007788 Bacteria 2236
38 Ga0099795_10043257 3300007788 Bacteria 1611
39 Ga0105250_10014981 3300009092 Bacteria 3179
40 Ga0105240_10062106 3300009093 Bacteria 4652
41 Ga0105240_10086503 3300009093 Bacteria 3839
42 Ga0105240_10427393 3300009093 Bacteria 1487
43 Ga0105247_10000222 3300009101 Bacteria 54538
44 Ga0105247_10000875 3300009101 Bacteria 22797
45 Ga0105247_10028012 3300009101 Bacteria 3407
46 Ga0105243_10275096 3300009148 Bacteria 1514
47 Ga0105241_10020260 3300009174 Bacteria 4912
48 Ga0105241_10030017 3300009174 Bacteria 4060
49 Ga0105242_10022466 3300009176 Bacteria 4961
50 Ga0105248_10207645 3300009177 Bacteria 2207
51 Ga0105237_10048285 3300009545 Bacteria 4279
52 Ga0105237_10142860 3300009545 Bacteria 2388
53 Ga0105237_10150960 3300009545 Bacteria 2320
54 Ga0105237_10176157 3300009545 Bacteria 2139
55 Ga0105237_10198480 3300009545 Bacteria 2006
56 Ga0105237_10313865 3300009545 Bacteria 1571
57 Ga0105238_10099355 3300009551 Bacteria 2893
58 Ga0105238_10184781 3300009551 Bacteria 2061
59 Ga0105239_10027915 3300010375 Bacteria 6209
60 Ga0105246_10116100 3300011119 Bacteria 1975
61 Ga0157371_10049379 3300013102 Bacteria 2989
62 Ga0157369_10011539 3300013105 Bacteria 10036
63 Ga0157369_10182073 3300013105 Bacteria 2211
64 Ga0157374_10152669 3300013296 Bacteria 2246
65 Ga0163162_10015829 3300013306 Bacteria 7370
66 Ga0157372_10122450 3300013307 Bacteria 2989
67 Ga0163163_10039192 3300014325 Bacteria 4623
68 Ga0163163_10184597 3300014325 Bacteria 2133
69 Ga0163163_10337253 3300014325 Bacteria 1563
70 Ga0182008_10000087 3300014497 Bacteria 72133
71 Ga0157379_10017730 3300014968 Bacteria 6273
72 Ga0182005_1000033 3300015265 Bacteria 184761
73 Ga0213872_10001762 3300021361 Bacteria 13555
74 Ga0228598_1000033 3300024227 Bacteria 19469
75 Ga0209436_100265 3300025208 Bacteria 23973
76 Ga0209130_1000549 3300025284 Bacteria 37476
77 Ga0209257_1003118 3300025304 Bacteria 14826
78 Ga0207642_10000029 3300025899 Bacteria 46159
79 Ga0207710_10000403 3300025900 Bacteria 28711
80 Ga0207710_10010788 3300025900 Bacteria 3848
81 Ga0207685_10044518 3300025905 Bacteria 1678
82 Ga0207705_10013207 3300025909 Bacteria 5962
83 Ga0207654_10013720 3300025911 Bacteria 4173
84 Ga0207695_10005736 3300025913 Bacteria 16355
85 Ga0207695_10033661 3300025913 Bacteria 5584
86 Ga0207671_10087378 3300025914 Bacteria 2344
87 Ga0207671_10185967 3300025914 Bacteria 1618
88 Ga0207693_10146553 3300025915 Bacteria 1856
89 Ga0207660_10202465 3300025917 Bacteria 1551
90 Ga0207657_10091570 3300025919 Bacteria 2535
91 Ga0207649_10101728 3300025920 Bacteria 1903
92 Ga0207681_10010618 3300025923 Bacteria 5647
93 Ga0207644_10001570 3300025931 Bacteria 14759
94 Ga0207644_10028010 3300025931 Bacteria 3896
95 Ga0207686_10000183 3300025934 Bacteria 48418
96 Ga0207691_10262216 3300025940 Bacteria 1490
97 Ga0207711_10177543 3300025941 Bacteria 1935
98 Ga0207661_10070285 3300025944 Bacteria 2857
99 Ga0207667_10005255 3300025949 Bacteria 15798
100 Ga0207667_10013165 3300025949 Bacteria 9483
101 Ga0207667_10169422 3300025949 Bacteria 2244
102 Ga0207640_10235001 3300025981 Bacteria 1413
103 Ga0207658_10009713 3300025986 Bacteria 6533
104 Ga0207658_10018588 3300025986 Bacteria 4802
105 Ga0207703_10000284 3300026035 Bacteria 56248
106 Ga0207703_10000514 3300026035 Bacteria 40038
107 Ga0207703_10001191 3300026035 Bacteria 24462
108 Ga0207703_10007503 3300026035 Bacteria 8656
109 Ga0207641_10003263 3300026088 Bacteria 14447
110 Ga0207641_10004279 3300026088 Bacteria 12409
111 Ga0207641_10010937 3300026088 Bacteria 7437
112 Ga0207641_10070584 3300026088 Bacteria 3001
113 Ga0207674_10121560 3300026116 Bacteria 2578
114 Ga0207675_100033704 3300026118 Unclassified 4771
115 Ga0207683_10079002 3300026121 Bacteria 2916
116 Ga0207698_10211243 3300026142 Bacteria 1746
117 Ga0209281_1001158 3300027111 Bacteria 18416
118 Ga0265356_1001839 3300028017 Bacteria 2987
119 Ga0268266_10002788 3300028379 Bacteria 18226
120 Ga0268266_10060296 3300028379 Bacteria 3270
121 Ga0268264_10000034 3300028381 Bacteria 401894
122 Ga0268264_10000156 3300028381 Bacteria 155304
123 Ga0268264_10076040 3300028381 Bacteria 2856
124 Ga0265334_10019647 3300028573 Bacteria 2776
125 Ga0307511_10011928 3300030521 Bacteria 8546
126 Ga0307509_10000028 3300031507 Bacteria 223572
127 Ga0307509_10000115 3300031507 Bacteria 116444
128 Ga0307518_10113651 3300031838 Bacteria 1926
129 Ga0307510_10000001 3300033180 Bacteria 1172244
130 Ga0307510_10000910 3300033180 Bacteria 31249
131 Ga0307510_10050323 3300033180 Bacteria 4422
132 Ga0373932_0044602 3300035112 Bacteria 1294
133 Ga0395900_0000882 3300037418 Bacteria 39334
134 Ga0395900_0002552 3300037418 Bacteria 19961
135 Ga0395898_0000346 3300037466 Bacteria 104661
136 Ga0395898_0000421 3300037466 Bacteria 90307
137 Ga0395905_0088290 3300037471 Bacteria 2906
138 Ga0395901_0000174 3300038443 Bacteria 83279
139 Ga0395901_0000278 3300038443 Bacteria 63368
140 Ga0395901_0002183 3300038443 Bacteria 19984
141 Ga0395901_0022537 3300038443 Bacteria 6455
142 Ga0395901_0057082 3300038443 Bacteria 4060
143 Ga0400484_27430 3300038725 Bacteria 3366
144 Ga0400490_15825 3300038726 Bacteria 12116
145 Ga0400483_131630 3300039062 Bacteria 1487
146 Ga0400483_225534 3300039062 Bacteria 6239
147 Ga0400483_234234 3300039062 Bacteria 5961
148 Ga0436360_0137854 3300039438 Bacteria 1626
149 Ga0436361_0576920 3300039447 Bacteria 94641
150 Ga0439448_0002146 3300042005 Bacteria 5311
151 Ga0466965_0064989 3300044683 Bacteria 1827
152 Ga0453684_0135374 3300044712 Bacteria 2951
153 Ga0466970_0052401 3300044765 Bacteria 2178
154 Ga0466958_0188225 3300045836 Bacteria 1311
155 Ga0466967_0258993 3300045976 Bacteria 1664
156 Ga0495627_014910 3300046453 Bacteria 2696
157 Ga0495591_036166 3300046458 Bacteria 1439
158 Ga0495650_0013677 3300046471 Bacteria 4278
159 Ga0495594_0000323 3300046499 Bacteria 23671
160 Ga0495583_0000283 3300046506 Bacteria 81166
161 Ga0495616_0046609 3300046513 Bacteria 2187
162 Ga0495616_0061802 3300046513 Bacteria 1836
163 Ga0495631_0012189 3300046518 Bacteria 4206
164 Ga0495648_0001019 3300046524 Bacteria 28606
165 Ga0495654_0000461 3300046530 Bacteria 33935
166 Ga0495598_0030113 3300046537 Bacteria 1518
167 Ga0495609_0000222 3300046538 Bacteria 55849
168 Ga0495670_0002931 3300046691 Bacteria 8408
169 Ga0495660_0005235 3300046810 Bacteria 7781
170 Ga0495683_0000185 3300047323 Bacteria 61212
171 Ga0495673_0059932 3300047469 Bacteria 1634
172 Ga0495681_0039146 3300047470 Bacteria 2317
173 Ga0496102_0012348 3300048905 Bacteria 7391
174 Ga0496104_0067904 3300048907 Bacteria 3387
175 Ga0496112_0117117 3300048915 Bacteria 2634
176 Ga0496117_0065081 3300048920 Bacteria 2481
177 Ga0496118_0079270 3300048921 Bacteria 2318
178 Ga0496121_0003311 3300048924 Bacteria 23135
179 Ga0496121_0017345 3300048924 Bacteria 7363
180 Ga0496121_0032611 3300048924 Bacteria 4731
181 Ga0496121_0097684 3300048924 Bacteria 2275
182 Ga0496122_0002779 3300048925 Bacteria 24076
183 Ga0496123_0010440 3300048926 Bacteria 8208
184 Ga0496123_0068802 3300048926 Bacteria 2227
185 Ga0496125_0000194 3300048928 Bacteria 130058
186 Ga0496125_0001728 3300048928 Bacteria 30378
187 Ga0496125_0014226 3300048928 Bacteria 7758
188 Ga0496125_0017806 3300048928 Bacteria 6761
189 Ga0496125_0059634 3300048928 Bacteria 3073
190 Ga0496125_0079435 3300048928 Bacteria 2516
191 Ga0496125_0100682 3300048928 Bacteria 2129
192 Ga0496125_0239563 3300048928 Bacteria 1153
193 Ga0496126_0003706 3300048929 Bacteria 19056
194 Ga0496126_0007968 3300048929 Bacteria 11509
195 Ga0496126_0086779 3300048929 Bacteria 2758
196 Ga0501031_0002302 3300049568 Bacteria 12105
197 Ga0501034_0091636 3300049571 Bacteria 3037
198 Ga0501034_0162640 3300049571 Bacteria 2202
199 Ga0501037_0048800 3300049573 Bacteria 3101
200 Ga0501035_0007847 3300049822 Bacteria 9975
201 Ga0501045_0121419 3300049824 Bacteria 1940
202 Ga0495655_0011357 3300053083 Bacteria 1787
203 Ga0500555_010259 3300053103 Bacteria 2682
204 Ga0500595_041735 3300053119 Bacteria 1473
205 Ga0500622_0004167 3300053156 Bacteria 9245
206 Ga0466962_0024229 3300061719 Bacteria 2915

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300011119 Ga0105246_10116100 Ga0105246_101161002 329
2 iso_pu_bacteria 2891670763 2891675261 336
3 3300009545 Ga0105237_10142860 Ga0105237_101428602 340
4 3300053119 Ga0500595_041735 Ga0500595_041735_368_1456 352
5 3300009177 Ga0105248_10207645 Ga0105248_102076451 353
6 3300028379 Ga0268266_10002788 Ga0268266_1000278810 353
7 3300048928 Ga0496125_0239563 Ga0496125_0239563_44_1135 353
8 3300007265 Ga0099794_10034713 Ga0099794_100347132 360
9 3300006946 Ga0079104_1001205 Ga0079104_10012052 361
10 3300027111 Ga0209281_1001158 Ga0209281_10011582 361
11 iso_pu_bacteria 2671180115 2671589652 375
12 3300025915 Ga0207693_10146553 Ga0207693_101465532 376
13 3300025934 Ga0207686_10000183 Ga0207686_1000018311 376
14 3300026118 Ga0207675_100033704 Ga0207675_1000337042 376
15 3300005548 Ga0070665_100065990 Ga0070665_1000659903 377
16 3300026121 Ga0207683_10079002 Ga0207683_100790022 377
17 3300028379 Ga0268266_10060296 Ga0268266_100602962 377
18 3300031507 Ga0307509_10000115 Ga0307509_100001159 381
19 3300028573 Ga0265334_10019647 Ga0265334_100196473 385
20 3300033180 Ga0307510_10000001 Ga0307510_10000001572 386
21 3300005355 Ga0070671_100015613 Ga0070671_1000156133 388
22 3300005367 Ga0070667_100031697 Ga0070667_1000316973 388
23 3300005617 Ga0068859_100000248 Ga0068859_10000024842 388
24 3300005841 Ga0068863_100030192 Ga0068863_1000301924 388
25 3300005843 Ga0068860_100147594 Ga0068860_1001475941 388
26 3300006931 Ga0097620_100000248 Ga0097620_10000024842 388
27 3300007788 Ga0099795_10018598 Ga0099795_100185982 388
28 3300009101 Ga0105247_10000222 Ga0105247_100002223 388
29 3300009148 Ga0105243_10275096 Ga0105243_102750962 388
30 3300014325 Ga0163163_10039192 Ga0163163_100391924 388
31 3300014325 Ga0163163_10337253 Ga0163163_103372531 388
32 3300014968 Ga0157379_10017730 Ga0157379_100177304 388
33 3300025931 Ga0207644_10028010 Ga0207644_100280103 388
34 3300025940 Ga0207691_10262216 Ga0207691_102622161 388
35 3300025986 Ga0207658_10009713 Ga0207658_100097134 388
36 3300026035 Ga0207703_10001191 Ga0207703_100011912 388
37 3300026088 Ga0207641_10010937 Ga0207641_100109374 388
38 3300028381 Ga0268264_10076040 Ga0268264_100760403 388
39 3300025304 Ga0209257_1003118 Ga0209257_100311813 390
40 iso_pu_bacteria 2863421361 2863427634 391
41 iso_pu_bacteria 8020945358 8020949202 391
42 3300038443 Ga0395901_0000278 Ga0395901_0000278_12173_13429 392
43 3300049573 Ga0501037_0048800 Ga0501037_0048800_1164_2378 393
44 3300049824 Ga0501045_0121419 Ga0501045_0121419_539_1753 393
45 3300049571 Ga0501034_0091636 Ga0501034_0091636_1472_2683 394
46 3300005548 Ga0070665_100060126 Ga0070665_1000601262 395
47 3300005563 Ga0068855_100458660 Ga0068855_1004586601 395
48 3300005617 Ga0068859_100000422 Ga0068859_10000042219 395
49 3300005841 Ga0068863_100039972 Ga0068863_1000399722 395
50 3300005842 Ga0068858_100015550 Ga0068858_1000155504 395
51 3300005842 Ga0068858_100020737 Ga0068858_1000207373 395
52 3300005843 Ga0068860_100000461 Ga0068860_10000046133 395
53 3300005843 Ga0068860_100000725 Ga0068860_10000072521 395
54 3300006931 Ga0097620_100000422 Ga0097620_10000042226 395
55 3300009092 Ga0105250_10014981 Ga0105250_100149811 395
56 3300009093 Ga0105240_10086503 Ga0105240_100865032 395
57 3300009101 Ga0105247_10000875 Ga0105247_1000087514 395
58 3300009101 Ga0105247_10028012 Ga0105247_100280124 395
59 3300009174 Ga0105241_10020260 Ga0105241_100202603 395
60 3300009174 Ga0105241_10030017 Ga0105241_100300173 395
61 3300009176 Ga0105242_10022466 Ga0105242_100224664 395
62 3300009545 Ga0105237_10048285 Ga0105237_100482853 395
63 3300009545 Ga0105237_10150960 Ga0105237_101509602 395
64 3300009545 Ga0105237_10176157 Ga0105237_101761572 395
65 3300009551 Ga0105238_10099355 Ga0105238_100993553 395
66 3300010375 Ga0105239_10027915 Ga0105239_100279155 395
67 3300013306 Ga0163162_10015829 Ga0163162_100158293 395
68 3300014325 Ga0163163_10184597 Ga0163163_101845972 395
69 3300024227 Ga0228598_1000033 Ga0228598_10000333 395
70 3300025900 Ga0207710_10000403 Ga0207710_1000040318 395
71 3300025900 Ga0207710_10010788 Ga0207710_100107882 395
72 3300025909 Ga0207705_10013207 Ga0207705_100132075 395
73 3300025911 Ga0207654_10013720 Ga0207654_100137203 395
74 3300025914 Ga0207671_10087378 Ga0207671_100873784 395
75 3300025931 Ga0207644_10001570 Ga0207644_1000157012 395
76 3300025941 Ga0207711_10177543 Ga0207711_101775432 395
77 3300025949 Ga0207667_10005255 Ga0207667_100052557 395
78 3300025986 Ga0207658_10018588 Ga0207658_100185883 395
79 3300026035 Ga0207703_10000284 Ga0207703_1000028419 395
80 3300026035 Ga0207703_10000514 Ga0207703_1000051413 395
81 3300026035 Ga0207703_10007503 Ga0207703_100075034 395
82 3300026088 Ga0207641_10003263 Ga0207641_100032633 395
83 3300026088 Ga0207641_10004279 Ga0207641_100042796 395
84 3300028381 Ga0268264_10000034 Ga0268264_10000034104 395
85 3300028381 Ga0268264_10000156 Ga0268264_1000015696 395
86 3300037418 Ga0395900_0000882 Ga0395900_0000882_14944_16131 395
87 3300037418 Ga0395900_0002552 Ga0395900_0002552_4516_5793 395
88 3300037471 Ga0395905_0088290 Ga0395905_0088290_354_1655 395
89 3300038443 Ga0395901_0000174 Ga0395901_0000174_75128_76405 395
90 3300038725 Ga0400484_27430 Ga0400484_27430_1981_3201 395
91 3300038726 Ga0400490_15825 Ga0400490_15825_5836_7056 395
92 3300039062 Ga0400483_131630 Ga0400483_131630_105_1325 395
93 3300039062 Ga0400483_225534 Ga0400483_225534_4574_5875 395
94 3300039062 Ga0400483_234234 Ga0400483_234234_3835_5079 395
95 3300042005 Ga0439448_0002146 Ga0439448_0002146_250_1494 395
96 3300044683 Ga0466965_0064989 Ga0466965_0064989_415_1635 395
97 3300046453 Ga0495627_014910 Ga0495627_014910_364_1584 395
98 3300046458 Ga0495591_036166 Ga0495591_036166_12_1232 395
99 3300046471 Ga0495650_0013677 Ga0495650_0013677_672_1892 395
100 3300046499 Ga0495594_0000323 Ga0495594_0000323_413_1633 395
101 3300046506 Ga0495583_0000283 Ga0495583_0000283_45105_46325 395
102 3300046513 Ga0495616_0046609 Ga0495616_0046609_793_2013 395
103 3300046513 Ga0495616_0061802 Ga0495616_0061802_139_1359 395
104 3300046518 Ga0495631_0012189 Ga0495631_0012189_575_1795 395
105 3300046524 Ga0495648_0001019 Ga0495648_0001019_748_1968 395
106 3300046530 Ga0495654_0000461 Ga0495654_0000461_18650_19870 395
107 3300046538 Ga0495609_0000222 Ga0495609_0000222_9506_10726 395
108 3300046691 Ga0495670_0002931 Ga0495670_0002931_2329_3549 395
109 3300046810 Ga0495660_0005235 Ga0495660_0005235_1279_2499 395
110 3300047323 Ga0495683_0000185 Ga0495683_0000185_41200_42420 395
111 3300047469 Ga0495673_0059932 Ga0495673_0059932_229_1449 395
112 3300048905 Ga0496102_0012348 Ga0496102_0012348_2204_3424 395
113 3300048907 Ga0496104_0067904 Ga0496104_0067904_1815_3059 395
114 3300048915 Ga0496112_0117117 Ga0496112_0117117_1259_2503 395
115 3300048920 Ga0496117_0065081 Ga0496117_0065081_439_1683 395
116 3300048921 Ga0496118_0079270 Ga0496118_0079270_354_1598 395
117 3300048924 Ga0496121_0003311 Ga0496121_0003311_20907_22136 395
118 3300048924 Ga0496121_0032611 Ga0496121_0032611_3178_4398 395
119 3300048924 Ga0496121_0097684 Ga0496121_0097684_635_1879 395
120 3300048926 Ga0496123_0068802 Ga0496123_0068802_675_1919 395
121 3300048928 Ga0496125_0000194 Ga0496125_0000194_19856_21076 395
122 3300048928 Ga0496125_0001728 Ga0496125_0001728_21168_22388 395
123 3300048928 Ga0496125_0017806 Ga0496125_0017806_3175_4395 395
124 3300048928 Ga0496125_0100682 Ga0496125_0100682_303_1532 395
125 3300049822 Ga0501035_0007847 Ga0501035_0007847_7281_8468 395
126 iso_pu_bacteria 640753048 640938607 395
127 3300009093 Ga0105240_10062106 Ga0105240_100621063 396
128 3300009545 Ga0105237_10198480 Ga0105237_101984801 396
129 3300013105 Ga0157369_10011539 Ga0157369_100115394 396
130 3300021361 Ga0213872_10001762 Ga0213872_1000176216 396
131 3300025899 Ga0207642_10000029 Ga0207642_1000002911 396
132 3300025913 Ga0207695_10005736 Ga0207695_1000573610 396
133 3300025913 Ga0207695_10033661 Ga0207695_100336613 396
134 3300025923 Ga0207681_10010618 Ga0207681_100106181 396
135 3300025949 Ga0207667_10013165 Ga0207667_100131653 396
136 3300038443 Ga0395901_0057082 Ga0395901_0057082_1547_2788 396
137 3300039447 Ga0436361_0576920 Ga0436361_0576920_43310_44524 396
138 3300045976 Ga0466967_0258993 Ga0466967_0258993_16_1236 396
139 3300061719 Ga0466962_0024229 Ga0466962_0024229_270_1502 396
140 3300009545 Ga0105237_10313865 Ga0105237_103138652 397
141 3300049568 Ga0501031_0002302 Ga0501031_0002302_2950_4197 397
142 iso_pu_bacteria 2600255292 2601669063 397
143 iso_pu_bacteria 2791355137 2792839707 397
144 3300005329 Ga0070683_100354795 Ga0070683_1003547951 398
145 3300005337 Ga0070682_100065647 Ga0070682_1000656473 398
146 3300005339 Ga0070660_100116712 Ga0070660_1001167122 398
147 3300005366 Ga0070659_100217552 Ga0070659_1002175522 398
148 3300005458 Ga0070681_10024510 Ga0070681_100245102 398
149 3300005530 Ga0070679_100114001 Ga0070679_1001140012 398
150 3300005535 Ga0070684_100044131 Ga0070684_1000441311 398
151 3300005539 Ga0068853_100091825 Ga0068853_1000918253 398
152 3300005563 Ga0068855_100208198 Ga0068855_1002081981 398
153 3300005564 Ga0070664_100117069 Ga0070664_1001170693 398
154 3300005577 Ga0068857_100149292 Ga0068857_1001492923 398
155 3300005616 Ga0068852_100076941 Ga0068852_1000769412 398
156 3300009093 Ga0105240_10427393 Ga0105240_104273931 398
157 3300009551 Ga0105238_10184781 Ga0105238_101847812 398
158 3300013105 Ga0157369_10182073 Ga0157369_101820733 398
159 3300013296 Ga0157374_10152669 Ga0157374_101526693 398
160 3300013307 Ga0157372_10122450 Ga0157372_101224503 398
161 3300025914 Ga0207671_10185967 Ga0207671_101859672 398
162 3300025917 Ga0207660_10202465 Ga0207660_102024652 398
163 3300025919 Ga0207657_10091570 Ga0207657_100915703 398
164 3300025920 Ga0207649_10101728 Ga0207649_101017281 398
165 3300025944 Ga0207661_10070285 Ga0207661_100702852 398
166 3300025949 Ga0207667_10169422 Ga0207667_101694222 398
167 3300025981 Ga0207640_10235001 Ga0207640_102350011 398
168 3300026088 Ga0207641_10070584 Ga0207641_100705843 398
169 3300026116 Ga0207674_10121560 Ga0207674_101215602 398
170 3300026142 Ga0207698_10211243 Ga0207698_102112432 398
171 3300031838 Ga0307518_10113651 Ga0307518_101136513 398
172 3300033180 Ga0307510_10000910 Ga0307510_100009109 398
173 3300033180 Ga0307510_10050323 Ga0307510_100503232 398
174 3300035112 Ga0373932_0044602 Ga0373932_0044602_55_1269 398
175 3300039438 Ga0436360_0137854 Ga0436360_0137854_329_1546 398
176 3300044765 Ga0466970_0052401 Ga0466970_0052401_446_1660 398
177 3300045836 Ga0466958_0188225 Ga0466958_0188225_31_1245 398
178 3300048924 Ga0496121_0017345 Ga0496121_0017345_966_2222 398
179 3300048928 Ga0496125_0079435 Ga0496125_0079435_813_2027 398
180 3300048929 Ga0496126_0003706 Ga0496126_0003706_11123_12379 398
181 3300048929 Ga0496126_0086779 Ga0496126_0086779_1433_2659 398
182 3300053156 Ga0500622_0004167 Ga0500622_0004167_385_1599 398
183 3300046537 Ga0495598_0030113 Ga0495598_0030113_159_1376 399
184 3300047470 Ga0495681_0039146 Ga0495681_0039146_66_1274 399
185 3300049571 Ga0501034_0162640 Ga0501034_0162640_160_1413 399
186 3300053103 Ga0500555_010259 Ga0500555_010259_1421_2638 399
187 3300007788 Ga0099795_10043257 Ga0099795_100432572 400
188 3300013102 Ga0157371_10049379 Ga0157371_100493793 400
189 3300025905 Ga0207685_10044518 Ga0207685_100445182 400
190 3300037466 Ga0395898_0000346 Ga0395898_0000346_65108_66322 400
191 3300037466 Ga0395898_0000421 Ga0395898_0000421_7161_8384 400
192 3300038443 Ga0395901_0002183 Ga0395901_0002183_13417_14640 400
193 3300038443 Ga0395901_0022537 Ga0395901_0022537_587_1810 400
194 3300044712 Ga0453684_0135374 Ga0453684_0135374_1406_2629 400
195 3300053083 Ga0495655_0011357 Ga0495655_0011357_57_1271 400
196 3300002739 JGI25158J39367_1000922 JGI25158J39367_10009223 401
197 3300002987 JGI25159J45721_1001024 JGI25159J45721_10010249 401
198 3300003374 JGI25161J50226_1000353 JGI25161J50226_10003534 401
199 3300004625 Ga0055543_1002582 Ga0055543_10025824 401
200 3300005262 Ga0065165_1006774 Ga0065165_10067743 401
201 3300005844 Ga0068862_100174009 Ga0068862_1001740093 401
202 3300014497 Ga0182008_10000087 Ga0182008_1000008752 401
203 3300015265 Ga0182005_1000033 Ga0182005_1000033134 401
204 3300025208 Ga0209436_100265 Ga0209436_10026518 401
205 3300025284 Ga0209130_1000549 Ga0209130_100054918 401
206 3300028017 Ga0265356_1001839 Ga0265356_10018393 401
207 3300030521 Ga0307511_10011928 Ga0307511_100119289 401
208 3300031507 Ga0307509_10000028 Ga0307509_10000028165 401
209 3300048925 Ga0496122_0002779 Ga0496122_0002779_989_2230 401
210 3300048926 Ga0496123_0010440 Ga0496123_0010440_2160_3401 401
211 3300048928 Ga0496125_0014226 Ga0496125_0014226_610_1851 401
212 3300048928 Ga0496125_0059634 Ga0496125_0059634_187_1428 401
213 3300048929 Ga0496126_0007968 Ga0496126_0007968_8531_9883 401

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12323

HTH_OrfB_IS605

Helix-turn-helix domain

85

130

0.95

PF01385

OrfB_IS605

Probable transposase

228

361

0.92

PF07282

OrfB_Zn_ribbon

Putative transposase DNA-binding domain

387

453

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
8ex9-assembly1.cif.gz_A isdra2 tnpb in complex with rerna and cognate dna, conformation 2 (ruvc domain unresolved) 0.9346 3 166
8ex9-assembly1.cif.gz_A isdra2 tnpb in complex with rerna and cognate dna, conformation 2 (ruvc domain unresolved) 0.9184 3 166
8exa-assembly1.cif.gz_A isdra2 tnpb in complex with rerna and cognate dna, conformation 1 (ruvc domain resolved) 0.8648 3 383
8h1j-assembly1.cif.gz_A cryo-em structure of the tnpb-omegarna-target dna ternary complex 0.8621 1 383
8exa-assembly1.cif.gz_A isdra2 tnpb in complex with rerna and cognate dna, conformation 1 (ruvc domain resolved) 0.86 3 383
ID Description Score Start End Superfamily
af_A0A1D6N0J7_2_99_1.20.58.90 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.6138 204 316 1.20.58.90
af_P9WNC1_2_123_3.20.190.10 Alpha Beta;Alpha-Beta Barrel;N-terminal domain of MutM-like DNA repair proteins;MutM-like, N-terminal 0.5933 141 167 3.20.190.10
af_A0A1D6PI21_2_104_1.20.58.90 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.5851 204 322 1.20.58.90
af_A0A1D8PPQ0_1_179_3.20.190.10 Alpha Beta;Alpha-Beta Barrel;N-terminal domain of MutM-like DNA repair proteins;MutM-like, N-terminal 0.5851 140 167 3.20.190.10
af_Q946Y7_2_104_1.20.58.90 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.5725 204 317 1.20.58.90
ID Description Score Start End GO Terms
AF-A0A6D0YGS3-F1-model_v4 deleted 0.9961 1 154
AF-A0A822PL05-F1-model_v4 deleted 0.9952 24 106
AF-A0A775YWF4-F1-model_v4 Helix-turn-helix domain-containing protein 0.9882 1 146
AF-A0A4T7Z3N9-F1-model_v4 Helix-turn-helix domain-containing protein 0.986 1 139
AF-A0A6D0YGS3-F1-model_v4 deleted 0.9832 1 154

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Predicted Structure (AlphaFold2)

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