F314108

General Info

Members Datasets Scaffolds Average Seq Length
205 152 194 621

Family's Representative Sequence

Representative Sequence 3300037312|Ga0395899_0009380|Ga0395899_0009380_4250_6184
Length 644
Sequence MNDTLLVYYEDELRHLRELGGEFAQAFPKVASRLGLDAFECADPYVERLLEGFSFLAARVRMQMDAQFPRFTQHLAEMIYPGLLAPTPSMTVVQIEPDRTHPALARGIVVPRGTALSSQLDRESTTRCEYRTAHALTLLPLRLMSAAYRGFDCLPHGWMPRLDGTPKAVLTLRFEWGPAAQSTMRLLDRLPLYLRGSEGVAELLHLRMTAHCPAAALRIGEGRTARYVPLATRCVQAKGFDDSEALLPAPSATYRGCRLLREFFAFPERYAFVELSVLDELAAAMREAGDADKIAFEIVLLLDAHDAMLEASVDASSFALHCTPAVNLFPRRADRIAVDDRRFEHHVVIDRTRPLDFEVFAIEGIDGYSAGDAAPQRFAPFYRARDPGEAVRAPGYFQMRRAPRLLSASERMRGARSRYAGTEVFVALVTPDEAPYASDLRQLGADVLCTNRDLPLSMPVGVGATDFTGDGQLQAVEHVRCLAGPTAPRPALAEPANLWRLLDMLSTSRLPLFAGAGFGETLGVAPPPGSDDASALRQWLAALCPADDAVGRHHIASLQTAGAKAITRRLPLPGPVCYGRGLQITLTFDERAQDGARTSLLGTVLAVALAEYMPINQFAETVVCTPARSIVTRYPARAGRCEIL

Samples

Sample ID Description Type Environment
1 2513237150 Cupriavidus taiwanensis STM6018 Isolate Nodule
2 2806310737 Pseudomonas mosselii BS011 Isolate Unclassified
3 2806310745 Pseudomonas mosselii PtA1 Isolate Unclassified
4 2821131069 Duganella sp. 1224 Isolate Unclassified
5 2857542790 Achromobacter sp. R-72367 Isolate Unclassified
6 3007872151 Pseudomonas sp. SWRI51 Isolate Rhizosphere
7 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
8 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
9 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
10 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
11 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
12 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
13 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
14 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
15 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
16 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
17 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
18 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
19 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
20 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
21 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
22 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
23 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
24 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
34 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
35 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
36 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
37 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
38 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
39 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
40 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
42 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
43 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
44 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
45 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
48 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
59 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
60 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
61 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
62 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
63 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
64 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
65 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
66 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
67 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
68 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
69 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
70 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
71 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
72 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
73 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
74 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
75 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
76 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
77 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
78 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
79 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
80 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
81 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
82 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
83 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
84 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
85 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
86 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
87 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
88 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
89 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
90 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
91 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
92 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
93 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
94 3300042136 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 Metagenome Rhizosphere
95 3300042137 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_072516_1519 Metagenome Rhizosphere
96 3300042142 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_072516_1610 Metagenome Rhizosphere
97 3300042533 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 Metagenome Rhizosphere
98 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
99 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
100 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
101 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
102 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
103 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
104 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
105 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
106 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
107 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
108 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
109 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
110 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
111 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
112 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
113 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
114 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
115 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
116 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
117 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
118 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
119 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
120 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
121 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
122 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
123 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
124 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
125 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
126 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
127 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
129 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
130 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
139 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
142 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
143 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
144 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
145 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
146 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
147 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
148 644736347 Cupriavidus taiwanensis LMG 19424 Isolate Nodule
149 8001522603 Methylomicrobium sp. RS1 Isolate Unclassified
150 8002392321 Alcaligenes faecalis Mc250 Isolate Rhizosphere
151 8056115690 Pseudomonas muyukensis COW39 Isolate Rhizosphere
152 8056137416 Pseudomonas fakonensis COW40 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.15
Metatranscriptomes 0.49
Isolates 5.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.73
Nodule 0.98
Rhizoplane 0.98
Rhizosphere 70.24
Stem 0
Stem Tuber 0
Unclassified 17.07

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10002464 3300002067 Bacteria 6429
2 JGI25151J46595_10002389 3300003187 Bacteria 11371
3 rootH1_10017937 3300003316 Unclassified 2954
4 rootH2_10010338 3300003320 Bacteria 9137
5 rootL2_10007041 3300003322 Unclassified 3784
6 rootL2_10007042 3300003322 Bacteria 30124
7 rootL2_10058672 3300003322 Bacteria 1759
8 Ga0055526_1001191 3300003771 Bacteria 18835
9 Ga0055537_1004645 3300003773 Bacteria 3879
10 Ga0055524_1006169 3300003775 Bacteria 5234
11 Ga0055534_1001153 3300003784 Bacteria 11154
12 Ga0055530_10000037 3300003791 Bacteria 116741
13 Ga0065165_1021988 3300005262 Bacteria 2200
14 Ga0070670_100005770 3300005331 Bacteria 10460
15 Ga0070671_100074145 3300005355 Bacteria 2843
16 Ga0070667_100019325 3300005367 Bacteria 5652
17 Ga0070694_100012071 3300005444 Bacteria 5365
18 Ga0070681_10004052 3300005458 Bacteria 13833
19 Ga0070681_10036345 3300005458 Bacteria 4946
20 Ga0070679_100014071 3300005530 Bacteria 7673
21 Ga0070686_100022039 3300005544 Bacteria 3792
22 Ga0068855_100015262 3300005563 Bacteria 9246
23 Ga0068855_100233411 3300005563 Bacteria 2058
24 Ga0068863_100000024 3300005841 Bacteria 186277
25 Ga0068860_100000529 3300005843 Bacteria 46619
26 Ga0081539_10000007 3300005985 Bacteria 532790
27 Ga0105240_10005419 3300009093 Bacteria 19014
28 Ga0114129_10328072 3300009147 Bacteria 2033
29 Ga0105237_10013334 3300009545 Bacteria 8623
30 Ga0105239_10004753 3300010375 Bacteria 16127
31 Ga0157373_10007719 3300013100 Bacteria 7995
32 Ga0157370_10002384 3300013104 Bacteria 22669
33 Ga0157369_10000666 3300013105 Bacteria 44321
34 Ga0157369_10002234 3300013105 Bacteria 23310
35 Ga0157369_10004016 3300013105 Bacteria 17440
36 Ga0157369_10029131 3300013105 Bacteria 6103
37 Ga0157374_10002645 3300013296 Bacteria 15082
38 Ga0157374_10012859 3300013296 Bacteria 7291
39 Ga0163162_10095966 3300013306 Bacteria 3053
40 Ga0157372_10004855 3300013307 Bacteria 14290
41 Ga0182008_10011844 3300014497 Bacteria 4625
42 Ga0209672_100634 3300025228 Bacteria 18174
43 Ga0209759_1002695 3300025256 Bacteria 7586
44 Ga0209565_1000021 3300025263 Bacteria 406281
45 Ga0209675_1000908 3300025291 Bacteria 18924
46 Ga0209025_1007220 3300025294 Bacteria 8365
47 Ga0209564_1000142 3300025295 Bacteria 178742
48 Ga0209564_1000158 3300025295 Bacteria 164425
49 Ga0209564_1001196 3300025295 Bacteria 29715
50 Ga0209050_1000058 3300025298 Bacteria 325558
51 Ga0209256_1000816 3300025299 Bacteria 39817
52 Ga0209256_1001716 3300025299 Bacteria 21021
53 Ga0207647_10039982 3300025904 Bacteria 2956
54 Ga0207695_10023631 3300025913 Bacteria 6936
55 Ga0207671_10012081 3300025914 Bacteria 6975
56 Ga0207657_10000367 3300025919 Bacteria 47554
57 Ga0207667_10008677 3300025949 Bacteria 12045
58 Ga0207658_10077784 3300025986 Bacteria 2532
59 Ga0207702_10079034 3300026078 Bacteria 2850
60 Ga0207641_10000068 3300026088 Bacteria 155114
61 Ga0209371_1000207 3300027312 Bacteria 83268
62 Ga0268264_10001911 3300028381 Bacteria 18823
63 Ga0265323_10001454 3300028653 Bacteria 11624
64 Ga0307515_10035213 3300028794 Bacteria 8156
65 Ga0307515_10054636 3300028794 Bacteria 5857
66 Ga0265330_10000288 3300031235 Bacteria 36642
67 Ga0265330_10002027 3300031235 Bacteria 11241
68 Ga0265330_10004170 3300031235 Bacteria 7380
69 Ga0265330_10007782 3300031235 Bacteria 5202
70 Ga0265329_10000585 3300031242 Bacteria 18851
71 Ga0265339_10000991 3300031249 Bacteria 21756
72 Ga0265331_10016979 3300031250 Bacteria 3808
73 Ga0265316_10000185 3300031344 Bacteria 71392
74 Ga0265316_10000191 3300031344 Bacteria 71027
75 Ga0265316_10000290 3300031344 Bacteria 56689
76 Ga0265316_10002118 3300031344 Bacteria 20859
77 Ga0265316_10070370 3300031344 Bacteria 2698
78 Ga0307513_10092229 3300031456 Bacteria 3084
79 Ga0307509_10000036 3300031507 Bacteria 190164
80 Ga0307509_10001260 3300031507 Bacteria 42936
81 Ga0307408_100007496 3300031548 Bacteria 7216
82 Ga0316579_10004552 3300031691 Bacteria 5518
83 Ga0316579_10023708 3300031691 Bacteria 2757
84 Ga0265314_10000001 3300031711 Bacteria 3792860
85 Ga0265342_10000976 3300031712 Bacteria 28362
86 Ga0316576_10039760 3300031727 Bacteria 3377
87 Ga0316578_10008134 3300031728 Bacteria 5315
88 Ga0316577_10004296 3300031733 Bacteria 7338
89 Ga0307414_10000055 3300032004 Bacteria 116524
90 Ga0316580_10003867 3300032139 Bacteria 4295
91 Ga0316593_10000100 3300032168 Bacteria 11188
92 Ga0307510_10000003 3300033180 Bacteria 756654
93 Ga0373936_0001627 3300035113 Bacteria 8224
94 Ga0316574_0000694 3300035398 Bacteria 14321
95 Ga0316574_0001014 3300035398 Bacteria 12677
96 Ga0316574_0055707 3300035398 Bacteria 2472
97 Ga0316582_0027814 3300036647 Bacteria 3420
98 Ga0316582_0070637 3300036647 Bacteria 2259
99 Ga0316584_0021367 3300036712 Bacteria 4703
100 Ga0316584_0032152 3300036712 Bacteria 3882
101 Ga0395899_0003894 3300037312 Bacteria 11768
102 Ga0395899_0009380 3300037312 Bacteria 7514
103 Ga0395900_0000077 3300037418 Bacteria 179525
104 Ga0395900_0005034 3300037418 Bacteria 13872
105 Ga0395900_0006992 3300037418 Bacteria 11691
106 Ga0395898_0000883 3300037466 Bacteria 48881
107 Ga0395898_0018238 3300037466 Bacteria 7158
108 Ga0395898_0085064 3300037466 Bacteria 3048
109 Ga0395905_0010529 3300037471 Bacteria 8984
110 Ga0395901_0000309 3300038443 Bacteria 59989
111 Ga0395901_0000530 3300038443 Bacteria 43967
112 Ga0400484_11966 3300038725 Unclassified 2222
113 Ga0400490_47679 3300038726 Bacteria 119204
114 Ga0400485_21149 3300038735 Bacteria 44285
115 Ga0400486_19638 3300038742 Bacteria 39761
116 Ga0400483_075456 3300039062 Bacteria 32523
117 Ga0400483_174450 3300039062 Bacteria 9080
118 Ga0400483_191813 3300039062 Bacteria 6488
119 Ga0400483_240525 3300039062 Bacteria 26340
120 Ga0400487_35380 3300039110 Unclassified 4498
121 Ga0400487_35778 3300039110 Bacteria 3044
122 Ga0400487_64640 3300039110 Bacteria 31253
123 Ga0439448_0000082 3300042005 Bacteria 16729
124 Ga0450900_000155 3300042136 Bacteria 4207
125 Ga0450902_000014 3300042137 Bacteria 16820
126 Ga0450905_000977 3300042142 Bacteria 3578
127 Ga0450901_000136 3300042533 Bacteria 8104
128 Ga0466969_0018981 3300044656 Bacteria 3578
129 Ga0453683_0063955 3300044673 Bacteria 2300
130 Ga0466966_0003215 3300044684 Bacteria 10770
131 Ga0466963_0004198 3300044694 Bacteria 8349
132 Ga0466964_0004526 3300044706 Bacteria 5135
133 Ga0453684_0058447 3300044712 Bacteria 4981
134 Ga0453684_0083905 3300044712 Bacteria 3964
135 Ga0466968_0013000 3300044735 Bacteria 3267
136 Ga0466970_0002856 3300044765 Bacteria 8348
137 Ga0466957_0014087 3300044842 Bacteria 4653
138 Ga0451576_0048689 3300045051 Unclassified 4450
139 Ga0451576_0092505 3300045051 Bacteria 3146
140 Ga0466958_0056171 3300045836 Bacteria 2391
141 Ga0495638_0011523 3300046460 Bacteria 6089
142 Ga0495653_0000005 3300046463 Bacteria 367438
143 Ga0495580_0008469 3300046472 Bacteria 8181
144 Ga0495584_0000105 3300046491 Bacteria 57062
145 Ga0495616_0000191 3300046513 Bacteria 51332
146 Ga0495616_0003074 3300046513 Bacteria 10814
147 Ga0495633_0001521 3300046558 Bacteria 17883
148 Ga0495656_0018678 3300046615 Bacteria 2668
149 Ga0495668_0000028 3300046616 Bacteria 286629
150 Ga0495611_0055731 3300046648 Bacteria 1789
151 Ga0495674_0066790 3300047319 Bacteria 3118
152 Ga0495686_0000080 3300047472 Bacteria 201665
153 Ga0495686_0000337 3300047472 Bacteria 77142
154 Ga0496112_0108813 3300048915 Bacteria 2742
155 Ga0496114_0009502 3300048917 Bacteria 7718
156 Ga0496116_0046657 3300048919 Bacteria 2922
157 Ga0496121_0005176 3300048924 Bacteria 16915
158 Ga0496121_0028864 3300048924 Bacteria 5152
159 Ga0496121_0042578 3300048924 Bacteria 3946
160 Ga0496122_0033383 3300048925 Bacteria 4234
161 Ga0496123_0032287 3300048926 Bacteria 3794
162 Ga0496124_0000894 3300048927 Bacteria 48157
163 Ga0501032_0002974 3300049569 Bacteria 13154
164 Ga0501032_0009021 3300049569 Bacteria 7248
165 Ga0501033_0001594 3300049570 Bacteria 19939
166 Ga0501033_0002957 3300049570 Bacteria 14213
167 Ga0501033_0036047 3300049570 Bacteria 3707
168 Ga0501036_0004807 3300049572 Bacteria 10918
169 Ga0501036_0039814 3300049572 Bacteria 3976
170 Ga0501037_0002776 3300049573 Bacteria 12676
171 Ga0501038_0008444 3300049574 Bacteria 9473
172 Ga0501039_0005521 3300049575 Bacteria 9568
173 Ga0501039_0045481 3300049575 Bacteria 3391
174 Ga0501042_0001122 3300049578 Bacteria 15421
175 Ga0501043_0104779 3300049579 Bacteria 2223
176 Ga0501046_0001218 3300049580 Bacteria 24929
177 Ga0501047_0003767 3300049581 Bacteria 14271
178 Ga0501048_0026889 3300049582 Bacteria 4186
179 Ga0501068_0010069 3300049584 Bacteria 5305
180 Ga0501035_0033580 3300049822 Bacteria 4665
181 Ga0501035_0044868 3300049822 Bacteria 3978
182 Ga0501044_0001834 3300049823 Bacteria 24743
183 Ga0501044_0003774 3300049823 Bacteria 17023
184 Ga0501044_0044071 3300049823 Bacteria 4632
185 Ga0501044_0124877 3300049823 Bacteria 2571
186 Ga0501045_0052659 3300049824 Bacteria 2972
187 Ga0500583_0012148 3300053092 Bacteria 3274
188 Ga0500641_0014337 3300053096 Bacteria 2924
189 Ga0500562_000577 3300053108 Bacteria 8802
190 Ga0500616_0000029 3300053153 Bacteria 428959
191 Ga0500616_0000105 3300053153 Bacteria 157881
192 Ga0590071_000019 3300059421 Bacteria 42395
193 Ga0466962_0002474 3300061719 Bacteria 8753
194 Ga0466962_0011137 3300061719 Bacteria 4328

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300003322 rootL2_10058672 rootL2_100586722 512
2 3300048915 Ga0496112_0108813 Ga0496112_0108813_1110_2720 512
3 3300049572 Ga0501036_0039814 Ga0501036_0039814_2348_3955 518
4 3300046648 Ga0495611_0055731 Ga0495611_0055731_27_1676 532
5 3300031548 Ga0307408_100007496 Ga0307408_1000074963 583
6 3300032004 Ga0307414_10000055 Ga0307414_1000005548 583
7 3300031344 Ga0265316_10070370 Ga0265316_100703701 587
8 3300046616 Ga0495668_0000028 Ga0495668_0000028_162309_164129 589
9 iso_pu_bacteria 2806310737 2807410749 592
10 iso_pu_bacteria 2806310745 2807459090 592
11 iso_pu_bacteria 3007872151 3007873386 592
12 iso_pu_bacteria 8056115690 8056116056 592
13 iso_pu_bacteria 8056137416 8056137693 592
14 iso_pu_bacteria 2821131069 2821132317 594
15 3300027312 Ga0209371_1000207 Ga0209371_100020755 596
16 3300031507 Ga0307509_10000036 Ga0307509_1000003614 596
17 3300042136 Ga0450900_000155 Ga0450900_000155_488_2350 596
18 3300042137 Ga0450902_000014 Ga0450902_000014_14714_16576 596
19 3300042142 Ga0450905_000977 Ga0450905_000977_1301_3163 596
20 3300042533 Ga0450901_000136 Ga0450901_000136_4227_6089 596
21 3300037466 Ga0395898_0018238 Ga0395898_0018238_4250_6157 597
22 3300038443 Ga0395901_0000309 Ga0395901_0000309_26504_28411 597
23 3300044712 Ga0453684_0083905 Ga0453684_0083905_749_2593 597
24 3300003320 rootH2_10010338 rootH2_100103382 598
25 3300005367 Ga0070667_100019325 Ga0070667_1000193255 598
26 3300005841 Ga0068863_100000024 Ga0068863_10000002425 598
27 3300005843 Ga0068860_100000529 Ga0068860_10000052915 598
28 3300013306 Ga0163162_10095966 Ga0163162_100959662 598
29 3300025986 Ga0207658_10077784 Ga0207658_100777842 598
30 3300026088 Ga0207641_10000068 Ga0207641_1000006842 598
31 3300028381 Ga0268264_10001911 Ga0268264_1000191115 598
32 3300046463 Ga0495653_0000005 Ga0495653_0000005_214526_216376 598
33 3300048924 Ga0496121_0028864 Ga0496121_0028864_1915_3765 598
34 3300048925 Ga0496122_0033383 Ga0496122_0033383_624_2474 598
35 3300048926 Ga0496123_0032287 Ga0496123_0032287_420_2270 598
36 3300013105 Ga0157369_10000666 Ga0157369_1000066611 600
37 3300013105 Ga0157369_10002234 Ga0157369_100022348 600
38 3300037466 Ga0395898_0000883 Ga0395898_0000883_13852_15756 600
39 3300045051 Ga0451576_0048689 Ga0451576_0048689_2082_3935 600
40 3300045051 Ga0451576_0092505 Ga0451576_0092505_426_2279 600
41 3300047472 Ga0495686_0000080 Ga0495686_0000080_44013_45869 600
42 iso_pu_bacteria 8001522603 8001523629 600
43 iso_pu_bacteria 8002392321 8002395873 600
44 3300044684 Ga0466966_0003215 Ga0466966_0003215_241_2148 601
45 3300044694 Ga0466963_0004198 Ga0466963_0004198_3834_5741 601
46 3300044842 Ga0466957_0014087 Ga0466957_0014087_2594_4501 601
47 3300061719 Ga0466962_0011137 Ga0466962_0011137_2189_4096 601
48 iso_pu_bacteria 2857542790 2857543676 601
49 3300037418 Ga0395900_0000077 Ga0395900_0000077_18976_20886 602
50 3300048924 Ga0496121_0005176 Ga0496121_0005176_13682_15562 602
51 iso_pu_bacteria 2513237150 2513954143 602
52 iso_pu_bacteria 644736347 644746932 602
53 3300005544 Ga0070686_100022039 Ga0070686_1000220393 603
54 3300037312 Ga0395899_0003894 Ga0395899_0003894_1314_3227 603
55 3300037312 Ga0395899_0009380 Ga0395899_0009380_4250_6184 603
56 3300037418 Ga0395900_0006992 Ga0395900_0006992_2371_4284 603
57 3300037466 Ga0395898_0085064 Ga0395898_0085064_387_2300 603
58 3300038443 Ga0395901_0000530 Ga0395901_0000530_14359_16272 603
59 3300005355 Ga0070671_100074145 Ga0070671_1000741451 604
60 3300028653 Ga0265323_10001454 Ga0265323_100014543 604
61 3300031235 Ga0265330_10000288 Ga0265330_1000028816 604
62 3300031235 Ga0265330_10002027 Ga0265330_100020277 604
63 3300031235 Ga0265330_10004170 Ga0265330_100041705 604
64 3300031235 Ga0265330_10007782 Ga0265330_100077823 604
65 3300031242 Ga0265329_10000585 Ga0265329_100005858 604
66 3300031249 Ga0265339_10000991 Ga0265339_100009917 604
67 3300031344 Ga0265316_10000185 Ga0265316_1000018516 604
68 3300031344 Ga0265316_10000191 Ga0265316_1000019120 604
69 3300031344 Ga0265316_10000290 Ga0265316_1000029020 604
70 3300031344 Ga0265316_10002118 Ga0265316_1000211811 604
71 3300031711 Ga0265314_10000001 Ga0265314_10000001886 604
72 3300031712 Ga0265342_10000976 Ga0265342_100009765 604
73 3300033180 Ga0307510_10000003 Ga0307510_10000003312 604
74 3300037418 Ga0395900_0005034 Ga0395900_0005034_4289_6175 604
75 3300038725 Ga0400484_11966 Ga0400484_11966_85_1956 604
76 3300038735 Ga0400485_21149 Ga0400485_21149_23579_25450 604
77 3300038742 Ga0400486_19638 Ga0400486_19638_12130_14001 604
78 3300039062 Ga0400483_075456 Ga0400483_075456_25043_26914 604
79 3300039062 Ga0400483_191813 Ga0400483_191813_3543_5414 604
80 3300039062 Ga0400483_240525 Ga0400483_240525_13148_15019 604
81 3300039110 Ga0400487_35380 Ga0400487_35380_753_2624 604
82 3300044673 Ga0453683_0063955 Ga0453683_0063955_83_1951 604
83 3300044712 Ga0453684_0058447 Ga0453684_0058447_3060_4928 604
84 3300046472 Ga0495580_0008469 Ga0495580_0008469_6058_7932 604
85 3300003322 rootL2_10007041 rootL2_100070412 605
86 3300003322 rootL2_10007042 rootL2_1000704227 605
87 3300005458 Ga0070681_10036345 Ga0070681_100363453 605
88 3300005530 Ga0070679_100014071 Ga0070679_1000140716 605
89 3300005563 Ga0068855_100233411 Ga0068855_1002334112 605
90 3300013296 Ga0157374_10012859 Ga0157374_100128597 605
91 3300031691 Ga0316579_10004552 Ga0316579_100045525 605
92 3300031691 Ga0316579_10023708 Ga0316579_100237082 605
93 3300031727 Ga0316576_10039760 Ga0316576_100397602 605
94 3300031728 Ga0316578_10008134 Ga0316578_100081343 605
95 3300031733 Ga0316577_10004296 Ga0316577_100042963 605
96 3300032139 Ga0316580_10003867 Ga0316580_100038673 605
97 3300032168 Ga0316593_10000100 Ga0316593_100001004 605
98 3300035398 Ga0316574_0000694 Ga0316574_0000694_3230_5098 605
99 3300035398 Ga0316574_0055707 Ga0316574_0055707_367_2241 605
100 3300036647 Ga0316582_0027814 Ga0316582_0027814_639_2513 605
101 3300036647 Ga0316582_0070637 Ga0316582_0070637_321_2195 605
102 3300036712 Ga0316584_0021367 Ga0316584_0021367_125_1999 605
103 3300036712 Ga0316584_0032152 Ga0316584_0032152_82_1956 605
104 3300038726 Ga0400490_47679 Ga0400490_47679_48871_50742 605
105 3300039062 Ga0400483_174450 Ga0400483_174450_5500_7371 605
106 3300039110 Ga0400487_35778 Ga0400487_35778_1145_3019 605
107 3300039110 Ga0400487_64640 Ga0400487_64640_28142_30013 605
108 3300048917 Ga0496114_0009502 Ga0496114_0009502_2656_4533 605
109 3300048927 Ga0496124_0000894 Ga0496124_0000894_20229_22127 605
110 3300053108 Ga0500562_000577 Ga0500562_000577_869_2773 605
111 3300003187 JGI25151J46595_10002389 JGI25151J46595_100023896 606
112 3300003771 Ga0055526_1001191 Ga0055526_10011913 606
113 3300003773 Ga0055537_1004645 Ga0055537_10046453 606
114 3300003784 Ga0055534_1001153 Ga0055534_10011537 606
115 3300009147 Ga0114129_10328072 Ga0114129_103280722 606
116 3300025263 Ga0209565_1000021 Ga0209565_100002119 606
117 3300025291 Ga0209675_1000908 Ga0209675_10009084 606
118 3300025294 Ga0209025_1007220 Ga0209025_10072205 606
119 3300025295 Ga0209564_1000158 Ga0209564_100015824 606
120 3300025295 Ga0209564_1001196 Ga0209564_100119619 606
121 3300025299 Ga0209256_1000816 Ga0209256_100081614 606
122 3300026078 Ga0207702_10079034 Ga0207702_100790342 606
123 3300028794 Ga0307515_10054636 Ga0307515_100546362 606
124 3300031456 Ga0307513_10092229 Ga0307513_100922293 606
125 3300035398 Ga0316574_0001014 Ga0316574_0001014_4370_6244 606
126 3300037471 Ga0395905_0010529 Ga0395905_0010529_1905_3776 606
127 3300047319 Ga0495674_0066790 Ga0495674_0066790_1154_3025 606
128 3300048919 Ga0496116_0046657 Ga0496116_0046657_886_2766 606
129 3300048924 Ga0496121_0042578 Ga0496121_0042578_76_1977 606
130 3300049570 Ga0501033_0002957 Ga0501033_0002957_4560_6464 606
131 3300049579 Ga0501043_0104779 Ga0501043_0104779_39_1943 606
132 3300049581 Ga0501047_0003767 Ga0501047_0003767_5756_7660 606
133 3300049822 Ga0501035_0044868 Ga0501035_0044868_1680_3584 606
134 3300049823 Ga0501044_0001834 Ga0501044_0001834_15051_16955 606
135 3300003775 Ga0055524_1006169 Ga0055524_10061693 607
136 3300003791 Ga0055530_10000037 Ga0055530_1000003742 607
137 3300005262 Ga0065165_1021988 Ga0065165_10219882 607
138 3300005331 Ga0070670_100005770 Ga0070670_1000057702 607
139 3300005444 Ga0070694_100012071 Ga0070694_1000120713 607
140 3300005458 Ga0070681_10004052 Ga0070681_1000405210 607
141 3300005985 Ga0081539_10000007 Ga0081539_10000007377 607
142 3300013105 Ga0157369_10029131 Ga0157369_100291315 607
143 3300025295 Ga0209564_1000142 Ga0209564_100014274 607
144 3300025298 Ga0209050_1000058 Ga0209050_1000058255 607
145 3300025299 Ga0209256_1001716 Ga0209256_10017169 607
146 3300028794 Ga0307515_10035213 Ga0307515_100352133 607
147 3300031250 Ga0265331_10016979 Ga0265331_100169794 607
148 3300031507 Ga0307509_10001260 Ga0307509_1000126024 607
149 3300035113 Ga0373936_0001627 Ga0373936_0001627_6238_8112 607
150 3300044656 Ga0466969_0018981 Ga0466969_0018981_1070_2944 607
151 3300044706 Ga0466964_0004526 Ga0466964_0004526_431_2305 607
152 3300044735 Ga0466968_0013000 Ga0466968_0013000_762_2636 607
153 3300044765 Ga0466970_0002856 Ga0466970_0002856_1818_3692 607
154 3300045836 Ga0466958_0056171 Ga0466958_0056171_370_2244 607
155 3300046460 Ga0495638_0011523 Ga0495638_0011523_948_2822 607
156 3300046491 Ga0495584_0000105 Ga0495584_0000105_27891_29768 607
157 3300046513 Ga0495616_0000191 Ga0495616_0000191_24675_26552 607
158 3300046513 Ga0495616_0003074 Ga0495616_0003074_7021_8895 607
159 3300046558 Ga0495633_0001521 Ga0495633_0001521_10833_12710 607
160 3300046615 Ga0495656_0018678 Ga0495656_0018678_621_2495 607
161 3300049569 Ga0501032_0002974 Ga0501032_0002974_1728_3602 607
162 3300049569 Ga0501032_0009021 Ga0501032_0009021_2290_4164 607
163 3300049570 Ga0501033_0001594 Ga0501033_0001594_16032_17906 607
164 3300049570 Ga0501033_0036047 Ga0501033_0036047_12_1886 607
165 3300049572 Ga0501036_0004807 Ga0501036_0004807_721_2595 607
166 3300049573 Ga0501037_0002776 Ga0501037_0002776_3615_5489 607
167 3300049574 Ga0501038_0008444 Ga0501038_0008444_3467_5341 607
168 3300049575 Ga0501039_0005521 Ga0501039_0005521_5711_7585 607
169 3300049575 Ga0501039_0045481 Ga0501039_0045481_491_2365 607
170 3300049578 Ga0501042_0001122 Ga0501042_0001122_6752_8626 607
171 3300049580 Ga0501046_0001218 Ga0501046_0001218_18014_19888 607
172 3300049582 Ga0501048_0026889 Ga0501048_0026889_491_2365 607
173 3300049584 Ga0501068_0010069 Ga0501068_0010069_294_2168 607
174 3300049822 Ga0501035_0033580 Ga0501035_0033580_2364_4238 607
175 3300049823 Ga0501044_0003774 Ga0501044_0003774_14781_16655 607
176 3300049823 Ga0501044_0044071 Ga0501044_0044071_1313_3187 607
177 3300049823 Ga0501044_0124877 Ga0501044_0124877_473_2347 607
178 3300049824 Ga0501045_0052659 Ga0501045_0052659_1087_2961 607
179 3300053092 Ga0500583_0012148 Ga0500583_0012148_617_2491 607
180 3300053096 Ga0500641_0014337 Ga0500641_0014337_906_2780 607
181 3300053153 Ga0500616_0000029 Ga0500616_0000029_255729_257606 607
182 3300053153 Ga0500616_0000105 Ga0500616_0000105_100960_102834 607
183 3300059421 Ga0590071_000019 Ga0590071_000019_35818_37698 607
184 3300061719 Ga0466962_0002474 Ga0466962_0002474_1818_3692 607
185 3300047472 Ga0495686_0000337 Ga0495686_0000337_18459_20339 608
186 3300003316 rootH1_10017937 rootH1_100179373 610
187 3300014497 Ga0182008_10011844 Ga0182008_100118442 610
188 3300025228 Ga0209672_100634 Ga0209672_1006343 611
189 3300009093 Ga0105240_10005419 Ga0105240_100054198 613
190 3300025256 Ga0209759_1002695 Ga0209759_10026958 613
191 3300002067 JGI24735J21928_10002464 JGI24735J21928_100024643 616
192 3300005563 Ga0068855_100015262 Ga0068855_1000152623 616
193 3300009545 Ga0105237_10013334 Ga0105237_100133344 616
194 3300010375 Ga0105239_10004753 Ga0105239_100047538 616
195 3300013100 Ga0157373_10007719 Ga0157373_100077193 616
196 3300013104 Ga0157370_10002384 Ga0157370_1000238410 616
197 3300013105 Ga0157369_10004016 Ga0157369_100040163 616
198 3300013296 Ga0157374_10002645 Ga0157374_100026453 616
199 3300013307 Ga0157372_10004855 Ga0157372_100048554 616
200 3300025904 Ga0207647_10039982 Ga0207647_100399822 616
201 3300025913 Ga0207695_10023631 Ga0207695_100236313 616
202 3300025914 Ga0207671_10012081 Ga0207671_100120815 616
203 3300025919 Ga0207657_10000367 Ga0207657_1000036710 616
204 3300025949 Ga0207667_10008677 Ga0207667_100086775 616
205 3300042005 Ga0439448_0000082 Ga0439448_0000082_8459_10357 616

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05947

T6SS_TssF

Type VI secretion system, TssF

1

641

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
6n38-assembly1.cif.gz_H structure of the type vi secretion system tssk-tssf-tssg baseplate subcomplex revealed by cryo-electron microscopy - full map sharpened 0.7677 46 616
6n38-assembly1.cif.gz_I structure of the type vi secretion system tssk-tssf-tssg baseplate subcomplex revealed by cryo-electron microscopy - full map sharpened 0.7669 47 614
6n38-assembly1.cif.gz_I structure of the type vi secretion system tssk-tssf-tssg baseplate subcomplex revealed by cryo-electron microscopy - full map sharpened 0.7629 47 614
6n38-assembly1.cif.gz_H structure of the type vi secretion system tssk-tssf-tssg baseplate subcomplex revealed by cryo-electron microscopy - full map sharpened 0.7625 46 616
6gj1-assembly1.cif.gz_A the baseplate complex from the type vi secretion system 0.5901 6 609
ID Description Score Start End Superfamily
af_Q9Y2E4_1_970_3.40.50.12780 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;ANL, N-terminal domain 0.5681 532 598 3.40.50.12780
1htyA05 Mainly Beta;Sandwich;Immunoglobulin-like; 0.5372 140 279 2.60.40.1360
af_Q8BQJ6_142_311_2.40.50.1070 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P); 0.5325 553 593 2.40.50.1070
af_Q5A0W4_540_618_3.30.70.1350 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Cation efflux protein, cytoplasmic domain 0.5007 525 597 3.30.70.1350
1htyA05 Mainly Beta;Sandwich;Immunoglobulin-like; 0.4985 140 279 2.60.40.1360
ID Description Score Start End GO Terms
AF-A0A4Q5UP35-F1-model_v4 deleted 0.949 520 616
AF-A0A658NKY6-F1-model_v4 Type VI secretion system baseplate subunit TssF 0.9383 530 615
AF-A0A1G3FU97-F1-model_v4 Type VI secretion protein 0.9323 509 616
AF-A0A434GGM1-F1-model_v4 Type VI secretion system baseplate subunit TssF 0.9323 505 616
AF-A0A658NKY6-F1-model_v4 Type VI secretion system baseplate subunit TssF 0.928 530 615

Feature Viewer

pLDDT pTM Quality
85.03 0.82 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map