F313215

General Info

Members Datasets Scaffolds Average Seq Length
204 141 147 334

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2945968032|2945968654
Length 373
Sequence GEPRTVYPAFGGVTNHAEQGMETSPEQTAPMRVTINSRAQKRRGERERMHDTEPGITAADFRAQTSAILTSVGEVIDGKPDAVRSALACMLAEGHLLIEDVPGVGKTMLARAIAASVDATVRRIQFTPDLLPGDVTGVSVYNPVDREFEFKPGAVFAQIVIADEINRSSPKTQSALLEAMEEGQVTVDGRTHRLPDPFLVVAAQNPLEMEGTYALPEAQRDRFMMRISMGYPDAAAEALMLRQRDSVNPLSAITPVADARSIRRLIGFARAVHVSPAVEEYAVALSQATRTDPSLHLGASPRATLQLVRAAKVWAALDGREFVIPDDLTALLVPVFAHRLLPARGVHRAGAQPVEAALAQIVERVRVPLAARL

Samples

Sample ID Description Type Environment
1 2508501039 Frankia saprophytica CN3 Isolate Nodule
2 2517572101 Frankia sp. DC12 Isolate Nodule
3 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
4 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
5 2643221546 Microbacterium sp. Root53 Isolate Unclassified
6 2643221553 Microbacterium sp. Root553 Isolate Unclassified
7 2643221566 Microbacterium sp. Root166 Isolate Unclassified
8 2643221575 Microbacterium sp. Root61 Isolate Unclassified
9 2643221597 Microbacterium sp. Root180 Isolate Unclassified
10 2643221604 Nocardioides sp. Root190 Isolate Unclassified
11 2643221630 Microbacterium sp. Root322 Isolate Unclassified
12 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
13 2675902999 Frankia asymbiotica NRRL B-16386 Isolate Nodule
14 2684623036 Frankia sp. CgIM4 Isolate Nodule
15 2687453737 Frankia sp. BMG5.36 Isolate Nodule
16 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
17 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
18 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
19 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
20 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
21 2773857921 Frankia asymbiotica NRRL B-16386 Isolate Nodule
22 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
23 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
24 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
25 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
26 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
27 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
28 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
29 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
30 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
31 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
32 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
33 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
34 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
35 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
36 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
37 2919069694 Microbacterium sp. 1154 Isolate Unclassified
38 2919395869 Microbacterium resistens 2980 Isolate Unclassified
39 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
40 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
41 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
42 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
43 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
44 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
45 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
46 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
47 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
48 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
49 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
50 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
51 3001889506 Janibacter sp. YIM B02568 Isolate Unclassified
52 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
53 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
54 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
55 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
56 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
57 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
58 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
59 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
60 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
61 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
62 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
63 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
64 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
65 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
66 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
67 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
68 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
69 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
70 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
71 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
72 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
73 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
74 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
75 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
83 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
84 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
85 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
86 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
87 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
88 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
89 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
90 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
91 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
92 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
93 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
94 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
95 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
96 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
97 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
98 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
99 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
100 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
101 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
102 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
103 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
104 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
105 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
106 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
107 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
108 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
109 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
110 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
111 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
112 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
113 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
114 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
115 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
116 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
117 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
118 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
119 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
120 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
121 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
122 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
123 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
124 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
125 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
126 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
127 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
128 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
131 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
132 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
133 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
134 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
135 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
136 8002775197 Frankia nepalensis CN7 Isolate Nodule
137 8002784119 Frankia sp. AgB1.9 Isolate Nodule
138 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
139 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
140 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
141 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 71.08
Metatranscriptomes 0.98
Isolates 27.94

Biome Distribution

Category Percentage (%)
Aerial Root 0.98
Bulb 0
Endosphere 5.88
Nodule 3.92
Rhizoplane 9.8
Rhizosphere 40.69
Stem 0
Stem Tuber 0
Unclassified 38.73

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10002659 3300001979 Bacteria 8034
2 Ga0070660_100210369 3300005339 Bacteria 1579
3 Ga0068859_100000204 3300005617 Bacteria 58400
4 Ga0068863_100001785 3300005841 Bacteria 21344
5 Ga0068862_100000240 3300005844 Bacteria 60867
6 Ga0075365_10006391 3300006038 Bacteria 6482
7 Ga0075365_10059003 3300006038 Bacteria 2556
8 Ga0075363_100030588 3300006048 Bacteria 2788
9 Ga0075364_10003588 3300006051 Bacteria 8839
10 Ga0075364_10025718 3300006051 Bacteria 3749
11 Ga0075364_10037339 3300006051 Bacteria 3145
12 Ga0075367_10001974 3300006178 Bacteria 9127
13 Ga0075370_10016099 3300006353 Bacteria 4019
14 Ga0075430_100112587 3300006846 Bacteria 2269
15 Ga0097620_100000204 3300006931 Bacteria 58400
16 Ga0097620_100000814 3300006931 Bacteria 31733
17 Ga0105244_10019205 3300009036 Bacteria 3822
18 Ga0105244_10044686 3300009036 Bacteria 2281
19 Ga0105243_10053722 3300009148 Bacteria 3196
20 Ga0105248_10000028 3300009177 Bacteria 225683
21 Ga0157370_10119862 3300013104 Bacteria 2456
22 Ga0157370_10160530 3300013104 Bacteria 2091
23 Ga0157370_10315761 3300013104 Bacteria 1442
24 Ga0157369_10296166 3300013105 Bacteria 1683
25 Ga0171462_1004 3300013250 Bacteria 678877
26 Ga0163162_10257001 3300013306 Bacteria 1878
27 Ga0163163_10007656 3300014325 Bacteria 9543
28 Ga0157380_10136667 3300014326 Bacteria 2099
29 Ga0224712_10032675 3300022467 Bacteria 1898
30 Ga0224712_10052922 3300022467 Bacteria 1587
31 Ga0209646_1000013 3300025246 Bacteria 565830
32 Ga0207655_1005154 3300025728 Bacteria 8996
33 Ga0207647_10065483 3300025904 Bacteria 2206
34 Ga0207705_10098377 3300025909 Bacteria 2149
35 Ga0207657_10147567 3300025919 Bacteria 1918
36 Ga0207709_10034097 3300025935 Bacteria 2997
37 Ga0207711_10001595 3300025941 Bacteria 20962
38 Ga0268265_10000252 3300028380 Bacteria 60859
39 Ga0307408_100318099 3300031548 Bacteria 1310
40 Ga0307405_10183001 3300031731 Bacteria 1506
41 Ga0307410_10011606 3300031852 Bacteria 5047
42 Ga0326468_10005112 3300031889 Bacteria 1169
43 Ga0307406_10000060 3300031901 Bacteria 60629
44 Ga0307406_10000948 3300031901 Bacteria 16242
45 Ga0307406_10004332 3300031901 Bacteria 7722
46 Ga0307406_10022520 3300031901 Bacteria 3739
47 Ga0307406_10025059 3300031901 Bacteria 3568
48 Ga0307407_10044283 3300031903 Bacteria 2507
49 Ga0307412_10072619 3300031911 Bacteria 2352
50 Ga0307412_10083209 3300031911 Bacteria 2218
51 Ga0307416_100022541 3300032002 Bacteria 4549
52 Ga0307416_100031097 3300032002 Bacteria 4014
53 Ga0307414_10097472 3300032004 Bacteria 2203
54 Ga0307414_10178275 3300032004 Bacteria 1706
55 Ga0307415_100041005 3300032126 Bacteria 3071
56 Ga0395898_0187119 3300037466 Bacteria 1979
57 Ga0395898_0207190 3300037466 Bacteria 1871
58 Ga0395901_0396398 3300038443 Bacteria 1418
59 Ga0436361_0308363 3300039447 Bacteria 2466
60 Ga0451837_1607440 3300041494 Bacteria 2610
61 Ga0466965_0032880 3300044683 Bacteria 2534
62 Ga0466961_0051275 3300044693 Bacteria 2636
63 Ga0466968_0060963 3300044735 Bacteria 1627
64 Ga0466970_0025332 3300044765 Bacteria 3106
65 Ga0466970_0062935 3300044765 Bacteria 1989
66 Ga0466957_0212071 3300044842 Bacteria 1275
67 Ga0466960_0051735 3300044901 Bacteria 1985
68 Ga0466959_0113660 3300045049 Bacteria 1930
69 Ga0495627_000524 3300046453 Bacteria 31793
70 Ga0495648_0010860 3300046524 Bacteria 6911
71 Ga0495686_0038171 3300047472 Bacteria 3073
72 Ga0496100_0080648 3300048903 Bacteria 2196
73 Ga0496101_0022030 3300048904 Bacteria 4382
74 Ga0496102_0021003 3300048905 Bacteria 5773
75 Ga0496102_0032001 3300048905 Bacteria 4723
76 Ga0496103_0015710 3300048906 Bacteria 4512
77 Ga0496104_0163349 3300048907 Bacteria 2136
78 Ga0496105_0172037 3300048908 Bacteria 1775
79 Ga0496105_0174621 3300048908 Bacteria 1760
80 Ga0496107_0028332 3300048910 Bacteria 3979
81 Ga0496109_0042623 3300048912 Bacteria 4112
82 Ga0496109_0065924 3300048912 Bacteria 3315
83 Ga0496110_0109671 3300048913 Bacteria 2479
84 Ga0496110_0118149 3300048913 Bacteria 2388
85 Ga0496113_0119688 3300048916 Bacteria 2057
86 Ga0496113_0217232 3300048916 Bacteria 1523
87 Ga0496113_0400201 3300048916 Bacteria 1102
88 Ga0496114_0009064 3300048917 Bacteria 7891
89 Ga0496114_0036481 3300048917 Bacteria 4064
90 Ga0496114_0055118 3300048917 Bacteria 3315
91 Ga0496114_0364588 3300048917 Bacteria 1278
92 Ga0496116_0000150 3300048919 Bacteria 141440
93 Ga0496116_0065196 3300048919 Bacteria 2337
94 Ga0496117_0000061 3300048920 Bacteria 258454
95 Ga0496117_0003099 3300048920 Bacteria 19903
96 Ga0496117_0003565 3300048920 Bacteria 17968
97 Ga0496117_0015473 3300048920 Bacteria 6502
98 Ga0496117_0020670 3300048920 Bacteria 5358
99 Ga0496117_0023974 3300048920 Bacteria 4844
100 Ga0496118_0000521 3300048921 Bacteria 63196
101 Ga0496118_0003148 3300048921 Bacteria 21102
102 Ga0496118_0004410 3300048921 Bacteria 16712
103 Ga0496118_0075680 3300048921 Bacteria 2399
104 Ga0496119_0001944 3300048922 Bacteria 23543
105 Ga0496119_0002893 3300048922 Bacteria 18324
106 Ga0496119_0003214 3300048922 Bacteria 17095
107 Ga0496119_0003370 3300048922 Bacteria 16628
108 Ga0496119_0004939 3300048922 Bacteria 13041
109 Ga0496119_0061208 3300048922 Bacteria 2250
110 Ga0496120_0000614 3300048923 Bacteria 53949
111 Ga0496120_0001705 3300048923 Bacteria 25133
112 Ga0496120_0005541 3300048923 Bacteria 10040
113 Ga0496120_0009042 3300048923 Bacteria 7119
114 Ga0496120_0091141 3300048923 Bacteria 1628
115 Ga0496121_0012033 3300048924 Bacteria 9507
116 Ga0496122_0000338 3300048925 Bacteria 101772
117 Ga0496122_0001010 3300048925 Bacteria 49780
118 Ga0496122_0003677 3300048925 Bacteria 19892
119 Ga0496122_0004314 3300048925 Bacteria 17811
120 Ga0496122_0046249 3300048925 Bacteria 3373
121 Ga0496123_0000031 3300048926 Bacteria 287596
122 Ga0496123_0000354 3300048926 Bacteria 86153
123 Ga0496123_0003484 3300048926 Bacteria 17583
124 Ga0496124_0003083 3300048927 Bacteria 20741
125 Ga0496124_0008925 3300048927 Bacteria 10388
126 Ga0496124_0052729 3300048927 Bacteria 3454
127 Ga0496124_0093974 3300048927 Bacteria 2440
128 Ga0496125_0000802 3300048928 Bacteria 51278
129 Ga0496125_0001134 3300048928 Bacteria 40533
130 Ga0496125_0015915 3300048928 Bacteria 7245
131 Ga0496125_0022780 3300048928 Bacteria 5806
132 Ga0496125_0040020 3300048928 Bacteria 4027
133 Ga0496125_0047308 3300048928 Bacteria 3599
134 Ga0496125_0049583 3300048928 Bacteria 3487
135 Ga0496126_0003239 3300048929 Bacteria 20810
136 Ga0496126_0003988 3300048929 Bacteria 18029
137 Ga0496126_0042632 3300048929 Bacteria 4190
138 Ga0501034_0001773 3300049571 Bacteria 27596
139 Ga0501034_0002199 3300049571 Bacteria 24127
140 Ga0501034_0027265 3300049571 Bacteria 5812
141 Ga0501038_0011484 3300049574 Bacteria 8079
142 Ga0501069_0216150 3300049585 Bacteria 1113
143 Ga0501070_0001094 3300049586 Bacteria 24342
144 nmdc:mga00v17_10996_c1 3300050491 Bacteria 4960
145 nmdc:mga0yw44_11791_c1 3300050492 Bacteria 4531
146 nmdc:mga06z11_1570_c1 3300050494 Bacteria 8503
147 Ga0500593_078109 3300053117 Bacteria 1424

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048916 Ga0496113_0400201 Ga0496113_0400201_107_1009 297
2 3300039447 Ga0436361_0308363 Ga0436361_0308363_572_1492 298
3 3300025909 Ga0207705_10098377 Ga0207705_100983772 299
4 3300037466 Ga0395898_0207190 Ga0395898_0207190_567_1550 299
5 3300013104 Ga0157370_10119862 Ga0157370_101198623 302
6 3300032004 Ga0307414_10178275 Ga0307414_101782752 302
7 3300048908 Ga0496105_0174621 Ga0496105_0174621_826_1746 302
8 3300044765 Ga0466970_0062935 Ga0466970_0062935_110_1090 304
9 3300045049 Ga0466959_0113660 Ga0466959_0113660_771_1751 304
10 3300049574 Ga0501038_0011484 Ga0501038_0011484_5268_6275 306
11 3300044693 Ga0466961_0051275 Ga0466961_0051275_1681_2613 307
12 iso_pu_bacteria 2984580707 2984583915 308
13 3300031889 Ga0326468_10005112 Ga0326468_100051122 309
14 3300048907 Ga0496104_0163349 Ga0496104_0163349_743_1732 309
15 iso_pu_bacteria 2925326138 2925333742 310
16 3300006846 Ga0075430_100112587 Ga0075430_1001125872 313
17 3300022467 Ga0224712_10052922 Ga0224712_100529221 313
18 3300031548 Ga0307408_100318099 Ga0307408_1003180991 313
19 3300031731 Ga0307405_10183001 Ga0307405_101830012 313
20 3300031911 Ga0307412_10072619 Ga0307412_100726192 313
21 iso_pu_bacteria 2919395869 2919399501 314
22 iso_pu_bacteria 2643221546 2643754348 316
23 3300048925 Ga0496122_0046249 Ga0496122_0046249_191_1180 317
24 3300049571 Ga0501034_0001773 Ga0501034_0001773_4684_5655 317
25 3300013104 Ga0157370_10315761 Ga0157370_103157611 318
26 3300022467 Ga0224712_10032675 Ga0224712_100326751 318
27 iso_pu_bacteria 2906799679 2906801556 318
28 3300037466 Ga0395898_0187119 Ga0395898_0187119_550_1554 319
29 3300050492 nmdc:mga0yw44_11791_c1 nmdc:mga0yw44_11791_c1_14_979 320
30 iso_pu_bacteria 2852646457 2852649037 321
31 iso_pu_bacteria 2857720070 2857723049 321
32 iso_pu_bacteria 2857723135 2857725727 321
33 iso_pu_bacteria 2928090899 2928092551 321
34 3300009036 Ga0105244_10019205 Ga0105244_100192052 322
35 3300009148 Ga0105243_10053722 Ga0105243_100537222 322
36 3300025728 Ga0207655_1005154 Ga0207655_10051543 322
37 3300025935 Ga0207709_10034097 Ga0207709_100340972 322
38 3300049585 Ga0501069_0216150 Ga0501069_0216150_91_1092 322
39 iso_pu_bacteria 2508501039 2508675750 322
40 iso_pu_bacteria 2517572101 2517763895 322
41 iso_pu_bacteria 2675902999 2676200863 322
42 iso_pu_bacteria 2684623036 2686544887 322
43 iso_pu_bacteria 2687453737 2689957784 322
44 iso_pu_bacteria 2773857921 2774845441 322
45 iso_pu_bacteria 3001889506 3001891116 322
46 iso_pu_bacteria 8002775197 8002777145 322
47 iso_pu_bacteria 8002784119 8002790044 322
48 iso_pu_bacteria 2946041624 2946045099 323
49 3300006051 Ga0075364_10025718 Ga0075364_100257182 324
50 3300013104 Ga0157370_10160530 Ga0157370_101605302 324
51 3300013306 Ga0163162_10257001 Ga0163162_102570012 324
52 3300031901 Ga0307406_10000948 Ga0307406_1000094813 324
53 3300048903 Ga0496100_0080648 Ga0496100_0080648_956_1951 324
54 3300048904 Ga0496101_0022030 Ga0496101_0022030_710_1705 324
55 3300048905 Ga0496102_0032001 Ga0496102_0032001_2045_3040 324
56 3300048906 Ga0496103_0015710 Ga0496103_0015710_3469_4464 324
57 3300048910 Ga0496107_0028332 Ga0496107_0028332_2827_3822 324
58 3300048912 Ga0496109_0042623 Ga0496109_0042623_1805_2800 324
59 3300048913 Ga0496110_0109671 Ga0496110_0109671_559_1554 324
60 3300048916 Ga0496113_0119688 Ga0496113_0119688_680_1675 324
61 3300048917 Ga0496114_0055118 Ga0496114_0055118_1434_2429 324
62 3300048922 Ga0496119_0061208 Ga0496119_0061208_856_1851 324
63 3300048923 Ga0496120_0091141 Ga0496120_0091141_450_1445 324
64 3300048928 Ga0496125_0000802 Ga0496125_0000802_26877_27872 324
65 iso_pu_bacteria 2808606368 2808883507 324
66 3300005617 Ga0068859_100000204 Ga0068859_10000020444 325
67 3300005841 Ga0068863_100001785 Ga0068863_1000017854 325
68 3300005844 Ga0068862_100000240 Ga0068862_10000024053 325
69 3300006051 Ga0075364_10037339 Ga0075364_100373392 325
70 3300006931 Ga0097620_100000204 Ga0097620_10000020444 325
71 3300006931 Ga0097620_100000814 Ga0097620_10000081426 325
72 3300009177 Ga0105248_10000028 Ga0105248_10000028186 325
73 3300014325 Ga0163163_10007656 Ga0163163_100076564 325
74 3300025941 Ga0207711_10001595 Ga0207711_1000159513 325
75 3300028380 Ga0268265_10000252 Ga0268265_1000025251 325
76 3300031911 Ga0307412_10083209 Ga0307412_100832092 325
77 3300046524 Ga0495648_0010860 Ga0495648_0010860_4644_5672 325
78 3300048905 Ga0496102_0021003 Ga0496102_0021003_4603_5637 325
79 3300048919 Ga0496116_0000150 Ga0496116_0000150_77892_78926 325
80 3300048920 Ga0496117_0003099 Ga0496117_0003099_1155_2132 325
81 3300048920 Ga0496117_0015473 Ga0496117_0015473_2290_3324 325
82 3300048920 Ga0496117_0023974 Ga0496117_0023974_3288_4322 325
83 3300048921 Ga0496118_0000521 Ga0496118_0000521_50315_51349 325
84 3300048921 Ga0496118_0075680 Ga0496118_0075680_979_1956 325
85 3300048922 Ga0496119_0003214 Ga0496119_0003214_7307_8341 325
86 3300048924 Ga0496121_0012033 Ga0496121_0012033_1437_2471 325
87 3300048925 Ga0496122_0004314 Ga0496122_0004314_2707_3684 325
88 3300048927 Ga0496124_0052729 Ga0496124_0052729_1901_2878 325
89 3300048928 Ga0496125_0015915 Ga0496125_0015915_6177_7154 325
90 3300048928 Ga0496125_0040020 Ga0496125_0040020_912_1889 325
91 3300048928 Ga0496125_0047308 Ga0496125_0047308_1894_2871 325
92 3300048929 Ga0496126_0003988 Ga0496126_0003988_14776_15753 325
93 3300049571 Ga0501034_0027265 Ga0501034_0027265_3204_4181 325
94 iso_pu_bacteria 2585428157 2588109170 325
95 iso_pu_bacteria 2643221542 2643732457 325
96 iso_pu_bacteria 2643221553 2643786440 325
97 iso_pu_bacteria 2643221630 2644171277 325
98 iso_pu_bacteria 2643221724 2644681136 325
99 iso_pu_bacteria 2728369380 2730230431 325
100 iso_pu_bacteria 2747842429 2747952070 325
101 iso_pu_bacteria 2833709550 2833711853 325
102 iso_pu_bacteria 2852663356 2852664205 325
103 iso_pu_bacteria 2946080515 2946084151 325
104 iso_pu_bacteria 8004182704 8004184619 325
105 3300053117 Ga0500593_078109 Ga0500593_078109_217_1215 326
106 iso_pu_bacteria 2643221566 2643848945 326
107 iso_pu_bacteria 2946033335 2946036666 326
108 iso_pu_bacteria 8004212874 8004214860 326
109 3300049571 Ga0501034_0002199 Ga0501034_0002199_18588_19571 327
110 3300006038 Ga0075365_10006391 Ga0075365_100063911 328
111 3300006048 Ga0075363_100030588 Ga0075363_1000305883 328
112 3300006178 Ga0075367_10001974 Ga0075367_100019744 328
113 3300006353 Ga0075370_10016099 Ga0075370_100160993 328
114 3300014326 Ga0157380_10136667 Ga0157380_101366672 328
115 3300047472 Ga0495686_0038171 Ga0495686_0038171_512_1513 328
116 3300048917 Ga0496114_0009064 Ga0496114_0009064_301_1299 328
117 3300048917 Ga0496114_0364588 Ga0496114_0364588_135_1133 328
118 3300050494 nmdc:mga06z11_1570_c1 nmdc:mga06z11_1570_c1_561_1562 328
119 iso_pu_bacteria 2870628048 2870631067 328
120 iso_pu_bacteria 8045830549 8045834316 328
121 3300005339 Ga0070660_100210369 Ga0070660_1002103691 329
122 3300006038 Ga0075365_10059003 Ga0075365_100590031 329
123 3300006051 Ga0075364_10003588 Ga0075364_100035886 329
124 3300013105 Ga0157369_10296166 Ga0157369_102961662 329
125 3300025246 Ga0209646_1000013 Ga0209646_1000013184 329
126 3300025904 Ga0207647_10065483 Ga0207647_100654831 329
127 3300025919 Ga0207657_10147567 Ga0207657_101475671 329
128 3300031901 Ga0307406_10000060 Ga0307406_1000006018 329
129 3300031901 Ga0307406_10004332 Ga0307406_100043322 329
130 3300032004 Ga0307414_10097472 Ga0307414_100974722 329
131 3300038443 Ga0395901_0396398 Ga0395901_0396398_241_1248 329
132 3300044765 Ga0466970_0025332 Ga0466970_0025332_332_1321 329
133 3300046453 Ga0495627_000524 Ga0495627_000524_14588_15577 329
134 3300048916 Ga0496113_0217232 Ga0496113_0217232_241_1248 329
135 3300048919 Ga0496116_0065196 Ga0496116_0065196_292_1299 329
136 3300048920 Ga0496117_0020670 Ga0496117_0020670_3159_4184 329
137 3300048921 Ga0496118_0003148 Ga0496118_0003148_15834_16841 329
138 3300048923 Ga0496120_0000614 Ga0496120_0000614_11098_12105 329
139 3300048925 Ga0496122_0000338 Ga0496122_0000338_79023_80030 329
140 3300048926 Ga0496123_0000031 Ga0496123_0000031_253731_254738 329
141 3300048927 Ga0496124_0093974 Ga0496124_0093974_448_1473 329
142 3300048928 Ga0496125_0001134 Ga0496125_0001134_5173_6180 329
143 3300048929 Ga0496126_0042632 Ga0496126_0042632_1178_2185 329
144 3300050491 nmdc:mga00v17_10996_c1 nmdc:mga00v17_10996_c1_230_1219 329
145 iso_pu_bacteria 2643221604 2644034541 329
146 iso_pu_bacteria 2811994872 2812324157 329
147 3300041494 Ga0451837_1607440 Ga0451837_1607440_131_1138 330
148 iso_pu_bacteria 2643221575 2643886396 330
149 iso_pu_bacteria 2773857763 2774398566 330
150 iso_pu_bacteria 2808606306 2808630395 330
151 iso_pu_bacteria 2821268502 2821270879 330
152 3300031901 Ga0307406_10022520 Ga0307406_100225202 331
153 iso_pu_bacteria 2808606447 2809228106 331
154 iso_pu_bacteria 2852632344 2852634815 331
155 3300013250 Ga0171462_1004 Ga0171462_1004432 332
156 3300031852 Ga0307410_10011606 Ga0307410_100116063 332
157 3300031901 Ga0307406_10025059 Ga0307406_100250593 332
158 3300031903 Ga0307407_10044283 Ga0307407_100442832 332
159 3300032002 Ga0307416_100022541 Ga0307416_1000225413 332
160 3300032002 Ga0307416_100031097 Ga0307416_1000310973 332
161 3300032126 Ga0307415_100041005 Ga0307415_1000410052 332
162 3300048922 Ga0496119_0002893 Ga0496119_0002893_692_1726 332
163 3300049586 Ga0501070_0001094 Ga0501070_0001094_4947_5981 332
164 3300044683 Ga0466965_0032880 Ga0466965_0032880_134_1168 333
165 3300044901 Ga0466960_0051735 Ga0466960_0051735_541_1575 333
166 3300048908 Ga0496105_0172037 Ga0496105_0172037_650_1666 333
167 3300048912 Ga0496109_0065924 Ga0496109_0065924_1775_2791 333
168 3300048913 Ga0496110_0118149 Ga0496110_0118149_214_1230 333
169 3300048917 Ga0496114_0036481 Ga0496114_0036481_675_1691 333
170 iso_pu_bacteria 2757320536 2758226922 333
171 iso_pu_bacteria 2977264416 2977267570 333
172 iso_pu_bacteria 8016254467 8016256731 333
173 3300044735 Ga0466968_0060963 Ga0466968_0060963_301_1329 334
174 3300044842 Ga0466957_0212071 Ga0466957_0212071_138_1193 334
175 3300048920 Ga0496117_0003565 Ga0496117_0003565_5167_6231 334
176 3300048921 Ga0496118_0004410 Ga0496118_0004410_14698_15762 334
177 3300048922 Ga0496119_0004939 Ga0496119_0004939_946_2010 334
178 3300048923 Ga0496120_0005541 Ga0496120_0005541_7573_8637 334
179 3300048925 Ga0496122_0001010 Ga0496122_0001010_29625_30689 334
180 3300048926 Ga0496123_0000354 Ga0496123_0000354_19051_20115 334
181 3300048927 Ga0496124_0003083 Ga0496124_0003083_7911_8975 334
182 3300048928 Ga0496125_0049583 Ga0496125_0049583_1002_2066 334
183 iso_pu_bacteria 2643221597 2643995104 334
184 iso_pu_bacteria 2773857758 2774380944 334
185 iso_pu_bacteria 2904509784 2904511176 334
186 iso_pu_bacteria 2908678064 2908680078 334
187 iso_pu_bacteria 2919069694 2919072277 334
188 iso_pu_bacteria 2974294766 2974296528 334
189 iso_pu_bacteria 2974324384 2974327235 334
190 iso_pu_bacteria 2977228692 2977228906 334
191 iso_pu_bacteria 2984542743 2984544519 334
192 3300009036 Ga0105244_10044686 Ga0105244_100446862 336
193 3300048922 Ga0496119_0001944 Ga0496119_0001944_17109_18155 336
194 3300048923 Ga0496120_0001705 Ga0496120_0001705_9465_10511 336
195 3300048920 Ga0496117_0000061 Ga0496117_0000061_159143_160192 337
196 3300048922 Ga0496119_0003370 Ga0496119_0003370_12003_13052 337
197 3300048923 Ga0496120_0009042 Ga0496120_0009042_5733_6782 337
198 3300048925 Ga0496122_0003677 Ga0496122_0003677_1499_2548 337
199 3300048926 Ga0496123_0003484 Ga0496123_0003484_16468_17517 337
200 3300048927 Ga0496124_0008925 Ga0496124_0008925_3851_4900 337
201 3300048928 Ga0496125_0022780 Ga0496125_0022780_1369_2418 337
202 3300048929 Ga0496126_0003239 Ga0496126_0003239_5145_6194 337
203 iso_pu_bacteria 2945968032 2945968654 338
204 3300001979 JGI24740J21852_10002659 JGI24740J21852_100026596 342

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07726

AAA_3

ATPase family associated with various cellular activities (AAA)

95

225

1

PF07728

AAA_5

AAA domain (dynein-related subfamily)

95

223

0.91

PF17863

AAA_lid_2

AAA lid domain

287

361

0.89

PF00004

AAA

ATPase family associated with various cellular activities (AAA)

96

231

0.8

PF00493

MCM

MCM P-loop domain

57

227

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
2r44-assembly1.cif.gz_A crystal structure of a putative atpase (chu_0153) from cytophaga hutchinsonii atcc 33406 at 2.00 a resolution 0.9342 27 338
2r44-assembly1.cif.gz_A crystal structure of a putative atpase (chu_0153) from cytophaga hutchinsonii atcc 33406 at 2.00 a resolution 0.8825 27 338
3nbx-assembly1.cif.gz_X crystal structure of e. coli rava (regulatory atpase variant a) in complex with adp 0.8368 26 330
4upb-assembly1.cif.gz_C electron cryo-microscopy of the complex formed between the hexameric atpase rava and the decameric inducible decarboxylase ldci 0.828 26 330
4upb-assembly1.cif.gz_E electron cryo-microscopy of the complex formed between the hexameric atpase rava and the decameric inducible decarboxylase ldci 0.8272 26 330
ID Description Score Start End Superfamily
af_Q79FN7_37_232_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9628 32 225 3.40.50.300
af_I6YGX9_248_354_1.10.8.80 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3;Magnesium chelatase subunit I, C-Terminal domain 0.954 236 332 1.10.8.80
af_O53314_205_312_1.10.8.80 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3;Magnesium chelatase subunit I, C-Terminal domain 0.9442 226 333 1.10.8.80
af_Q79FN7_37_232_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.939 32 225 3.40.50.300
af_O53314_205_312_1.10.8.80 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3;Magnesium chelatase subunit I, C-Terminal domain 0.9276 226 333 1.10.8.80
ID Description Score Start End GO Terms
AF-A0A537WK57-F1-model_v4 AAA family ATPase 0.9893 27 304 GO:0005524
GO:0016887
AF-A0A6B2DJH8-F1-model_v4 MoxR family ATPase 0.9881 25 312 GO:0005524
GO:0016887
AF-A0A4U3BBS4-F1-model_v4 deleted 0.9862 47 151
AF-A0A7X5N5M0-F1-model_v4 AAA family ATPase 0.986 91 165 GO:0005524
GO:0016887
AF-A0A7C6ZD07-F1-model_v4 AAA domain-containing protein 0.9857 32 203 GO:0005524
GO:0016887

Feature Viewer

pLDDT pTM Quality
87.76 0.86 High
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Predicted Structure (AlphaFold2)

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