F300613

General Info

Members Datasets Scaffolds Average Seq Length
195 151 390 483

Family's Representative Sequence

Representative Sequence 3300047472|Ga0495686_0004519|Ga0495686_0004519_5942_7570
Length 542
Sequence VDDGFVAAIAWSSNQMRAQANVAWGRPTQAQSLEDGQNRLPAHEADSLRRTLAMLDTLEQHARRASGRLPATAHHWSVRGVREYSEELSVRQDVAEAPQRAHENGAMVTVIDGGLGYAASSDLSESGLGAAFERAHALARASAGRTVIDYERIARPAASGRYASRVERAASSATLPEKLGWLREVCAAAGGDTRIVDRHATLWHVKTEQLQFTSDGARTEQCWEFMTPSVQVTAHANGVTQVRSSAGQYNGFCQQGGIEVLERARFRESEGPRVAREALELVTAAACPSGTFDLILMPDQMMLQIHESIGHPLELDRILGDERNFAGTSFVTLDMFGHYQYGSELLNVSFDPGREHEFAGFAFDDDGTPAERALLIERGLLKRPLGGSLSQTRAQAQGFEIGGVATTRSAGWNRAPIDRMSNLNVEPGDSSFEQMISATELGVVMHTNCSWSIDDSRNKFQFGCEYARMVRGGRLAEIVRNPNYRGISATFWRSLSMVGNSETVAVMGTPFCGKGEPSQVIRVGHASPACKFSNVDVFGGAL

Samples

Sample ID Description Type Environment
1 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
2 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
3 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
4 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
17 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
25 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
26 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
28 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
33 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
34 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
35 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
36 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
37 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
38 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
39 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
40 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
41 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
42 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
43 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
44 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
45 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
66 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
67 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
68 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
69 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
70 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
71 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
72 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
73 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
74 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
75 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
76 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
77 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
78 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
79 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
80 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
81 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
82 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
83 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
84 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
85 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
86 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
87 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
88 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
89 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
90 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
91 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
92 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
93 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
94 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
95 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
96 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
97 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
98 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
99 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
100 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
101 3300041503 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_8 MetaG Metagenome Unclassified
102 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
103 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
104 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
105 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
106 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
107 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
108 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
109 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
110 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
111 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
112 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
113 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
114 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
115 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
116 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
117 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
118 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
119 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
120 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
121 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
122 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
123 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
124 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
128 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
129 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
130 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
131 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
132 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
133 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
134 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
135 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
136 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
137 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
139 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
140 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
141 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
142 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
143 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
144 2617270889 Nostoc punctiforme PCC 73102 Isolate Unclassified
145 2643221660 Methylibium sp. Root1272 Isolate Unclassified
146 2848694841 Nostoc sp. RF31YmG Isolate Unclassified
147 2849660919 Nostoc sp. T09 Isolate Unclassified
148 2886627955 Nostoc sp. PA-18-2419 JC1668 Isolate Unclassified
149 2913844669 Nostocales cyanobacterium LEGE 12452 Isolate Unclassified
150 2913939268 Nostoc sp. LEGE 12447 Isolate Unclassified
151 642555144 Nostoc punctiforme PCC 73102 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.9
Metatranscriptomes 0
Isolates 4.1

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.08
Nodule 0
Rhizoplane 2.56
Rhizosphere 77.95
Stem 0
Stem Tuber 0
Unclassified 1.54

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495686_0004519 3300047472 Bacteria 11401
2 Ga0070682_100002327 3300005337 Bacteria 10506
3 Ga0068868_100148064 3300005338 Bacteria 1932
4 Ga0070661_100012414 3300005344 Bacteria 5960
5 Ga0070669_100077030 3300005353 Bacteria 2477
6 Ga0070675_100053007 3300005354 Bacteria 3336
7 Ga0070671_100054414 3300005355 Bacteria 3328
8 Ga0070673_100196093 3300005364 Bacteria 1737
9 Ga0070681_10001079 3300005458 Bacteria 23263
10 Ga0068867_100000109 3300005459 Bacteria 52712
11 Ga0070706_100004335 3300005467 Bacteria 13735
12 Ga0070679_100066782 3300005530 Bacteria 3586
13 Ga0070693_100049767 3300005547 Bacteria 2392
14 Ga0070665_100066057 3300005548 Bacteria 3628
15 Ga0068855_100016253 3300005563 Bacteria 8949
16 Ga0068857_100022433 3300005577 Bacteria 5554
17 Ga0068854_100149518 3300005578 Bacteria 1800
18 Ga0068852_100025313 3300005616 Bacteria 4807
19 Ga0068852_100028220 3300005616 Bacteria 4589
20 Ga0068852_100035220 3300005616 Bacteria 4173
21 Ga0068864_100028404 3300005618 Bacteria 4727
22 Ga0068851_10020083 3300005834 Bacteria 3231
23 Ga0068863_100010152 3300005841 Bacteria 9156
24 Ga0068858_100013149 3300005842 Bacteria 7804
25 Ga0070717_10221288 3300006028 Bacteria 1664
26 Ga0075365_10006592 3300006038 Bacteria 6404
27 Ga0075366_10006901 3300006195 Bacteria 6251
28 Ga0075366_10012940 3300006195 Bacteria 4743
29 Ga0097621_100056814 3300006237 Bacteria 3198
30 Ga0068871_100003084 3300006358 Bacteria 11435
31 Ga0075430_100124395 3300006846 Bacteria 2150
32 Ga0075429_100000559 3300006880 Bacteria 28497
33 Ga0105240_10011009 3300009093 Bacteria 12662
34 Ga0105240_10187818 3300009093 Bacteria 2432
35 Ga0105245_10016004 3300009098 Bacteria 6536
36 Ga0105243_10015355 3300009148 Bacteria 5793
37 Ga0105241_10006815 3300009174 Bacteria 8399
38 Ga0105242_10003305 3300009176 Bacteria 12554
39 Ga0105242_10005227 3300009176 Bacteria 10023
40 Ga0105248_10010870 3300009177 Bacteria 10049
41 Ga0105248_10023834 3300009177 Bacteria 6803
42 Ga0105248_10179103 3300009177 Bacteria 2389
43 Ga0105248_10209818 3300009177 Bacteria 2194
44 Ga0105248_10349289 3300009177 Bacteria 1665
45 Ga0105237_10005128 3300009545 Bacteria 14838
46 Ga0105238_10189204 3300009551 Bacteria 2035
47 Ga0157370_10012105 3300013104 Bacteria 8975
48 Ga0157374_10137303 3300013296 Bacteria 2371
49 Ga0157378_10258484 3300013297 Bacteria 1670
50 Ga0157380_10117414 3300014326 Bacteria 2247
51 Ga0157380_10241508 3300014326 Bacteria 1629
52 Ga0157377_10000028 3300014745 Bacteria 134810
53 Ga0157379_10021953 3300014968 Bacteria 5656
54 Ga0213872_10000641 3300021361 Bacteria 26449
55 Ga0207656_10002719 3300025321 Bacteria 5998
56 Ga0207680_10042476 3300025903 Bacteria 2660
57 Ga0207684_10002942 3300025910 Bacteria 16863
58 Ga0207654_10045220 3300025911 Bacteria 2505
59 Ga0207707_10031551 3300025912 Bacteria 4637
60 Ga0207695_10008753 3300025913 Bacteria 12620
61 Ga0207671_10033671 3300025914 Bacteria 3810
62 Ga0207649_10004295 3300025920 Bacteria 7749
63 Ga0207652_10016588 3300025921 Bacteria 6017
64 Ga0207681_10074307 3300025923 Bacteria 2381
65 Ga0207694_10026346 3300025924 Bacteria 4422
66 Ga0207644_10020116 3300025931 Bacteria 4535
67 Ga0207706_10051279 3300025933 Bacteria 3644
68 Ga0207706_10076274 3300025933 Bacteria 2949
69 Ga0207686_10007737 3300025934 Bacteria 5790
70 Ga0207709_10008227 3300025935 Bacteria 5777
71 Ga0207691_10043178 3300025940 Bacteria 4155
72 Ga0207691_10150156 3300025940 Bacteria 2049
73 Ga0207711_10050422 3300025941 Bacteria 3563
74 Ga0207711_10068455 3300025941 Bacteria 3075
75 Ga0207641_10084973 3300026088 Bacteria 2756
76 Ga0207698_10036466 3300026142 Bacteria 3610
77 Ga0207698_10113190 3300026142 Bacteria 2279
78 Ga0268266_10010511 3300028379 Bacteria 8086
79 Ga0265337_1002313 3300028556 Bacteria 8845
80 Ga0307515_10004583 3300028794 Bacteria 28461
81 Ga0307515_10012915 3300028794 Bacteria 15663
82 Ga0265320_10002136 3300031240 Bacteria 13865
83 Ga0307513_10019558 3300031456 Bacteria 8060
84 Ga0307513_10020888 3300031456 Bacteria 7748
85 Ga0307509_10054327 3300031507 Bacteria 4266
86 Ga0307509_10058976 3300031507 Bacteria 4062
87 Ga0307408_100021203 3300031548 Bacteria 4395
88 Ga0307508_10000555 3300031616 Bacteria 44419
89 Ga0307514_10001100 3300031649 Bacteria 37784
90 Ga0316579_10011063 3300031691 Bacteria 3828
91 Ga0265314_10004749 3300031711 Bacteria 12456
92 Ga0316576_10005729 3300031727 Bacteria 7644
93 Ga0316576_10041149 3300031727 Bacteria 3325
94 Ga0316578_10015592 3300031728 Bacteria 4090
95 Ga0316578_10018854 3300031728 Bacteria 3789
96 Ga0307410_10142316 3300031852 Bacteria 1776
97 Ga0307412_10127118 3300031911 Bacteria 1845
98 Ga0316580_10010446 3300032139 Bacteria 2806
99 Ga0307510_10002601 3300033180 Bacteria 20609
100 Ga0373923_0004935 3300035111 Bacteria 4481
101 Ga0373946_0018011 3300035171 Bacteria 2707
102 Ga0316574_0018260 3300035398 Bacteria 4119
103 Ga0316574_0050700 3300035398 Bacteria 2584
104 Ga0373937_0024312 3300036401 Bacteria 5462
105 Ga0316584_0022308 3300036712 Bacteria 4615
106 Ga0316584_0068836 3300036712 Bacteria 2653
107 Ga0316584_0071808 3300036712 Bacteria 2594
108 Ga0395899_0014138 3300037312 Bacteria 6092
109 Ga0395899_0018721 3300037312 Bacteria 5262
110 Ga0395900_0009434 3300037418 Bacteria 10004
111 Ga0395900_0014322 3300037418 Bacteria 8096
112 Ga0395900_0111996 3300037418 Bacteria 2803
113 Ga0395900_0164794 3300037418 Bacteria 2259
114 Ga0395898_0021433 3300037466 Bacteria 6554
115 Ga0395898_0076403 3300037466 Bacteria 3234
116 Ga0395905_0004027 3300037471 Bacteria 15421
117 Ga0395905_0007250 3300037471 Bacteria 11048
118 Ga0395905_0023520 3300037471 Bacteria 5821
119 Ga0395905_0026048 3300037471 Bacteria 5514
120 Ga0395905_0060270 3300037471 Bacteria 3548
121 Ga0395905_0091963 3300037471 Bacteria 2844
122 Ga0395905_0253014 3300037471 Bacteria 1645
123 Ga0395901_0017380 3300038443 Bacteria 7342
124 Ga0395901_0018240 3300038443 Bacteria 7164
125 Ga0400484_28943 3300038725 Bacteria 3036
126 Ga0400490_40892 3300038726 Unclassified 2007
127 Ga0400485_03412 3300038735 Bacteria 7062
128 Ga0400485_17834 3300038735 Bacteria 2161
129 Ga0400488_38388 3300038741 Bacteria 6249
130 Ga0400486_05070 3300038742 Bacteria 7607
131 Ga0400486_09569 3300038742 Bacteria 5608
132 Ga0400483_094193 3300039062 Unclassified 4599
133 Ga0400483_281450 3300039062 Unclassified 4857
134 Ga0400489_34760 3300039093 Bacteria 104027
135 Ga0436361_0470283 3300039447 Bacteria 12222
136 Ga0436361_0996083 3300039447 Bacteria 2192
137 Ga0451793_0083921 3300041452 Bacteria 3608
138 Ga0451833_1039377 3300041491 Bacteria 3252
139 Ga0451847_0205519 3300041503 Bacteria 1646
140 Ga0451577_0033324 3300042876 Bacteria 4643
141 Ga0466969_0044601 3300044656 Bacteria 2204
142 Ga0466965_0018050 3300044683 Bacteria 3377
143 Ga0466966_0043455 3300044684 Bacteria 2880
144 Ga0466966_0088323 3300044684 Bacteria 1926
145 Ga0466961_0020572 3300044693 Bacteria 4246
146 Ga0453684_0017582 3300044712 Bacteria 11059
147 Ga0453684_0095449 3300044712 Bacteria 3655
148 Ga0466968_0025954 3300044735 Bacteria 2402
149 Ga0466970_0002214 3300044765 Bacteria 9386
150 Ga0466959_0017969 3300045049 Bacteria 5188
151 Ga0466959_0037157 3300045049 Bacteria 3598
152 Ga0451576_0003237 3300045051 Bacteria 22653
153 Ga0451576_0072791 3300045051 Bacteria 3576
154 Ga0451576_0155346 3300045051 Bacteria 2387
155 Ga0466958_0034447 3300045836 Bacteria 3020
156 Ga0495606_0007013 3300046507 Bacteria 10223
157 Ga0495628_0000112 3300046516 Bacteria 66331
158 Ga0495632_0016905 3300046519 Bacteria 4043
159 Ga0495625_0033325 3300046660 Bacteria 3810
160 Ga0495680_0041960 3300047322 Bacteria 3634
161 Ga0496104_0025025 3300048907 Bacteria 5499
162 Ga0496105_0021763 3300048908 Bacteria 5190
163 Ga0496109_0003512 3300048912 Bacteria 13097
164 Ga0496112_0003563 3300048915 Bacteria 12936
165 Ga0496116_0051448 3300048919 Bacteria 2736
166 Ga0496126_0090214 3300048929 Bacteria 2697
167 Ga0496126_0115979 3300048929 Bacteria 2328
168 Ga0501038_0037916 3300049574 Bacteria 4223
169 Ga0501043_0072730 3300049579 Bacteria 2701
170 Ga0501047_0001955 3300049581 Bacteria 19810
171 Ga0501070_0005337 3300049586 Bacteria 10963
172 Ga0501072_0098615 3300049588 Bacteria 2323
173 Ga0501073_0000206 3300049589 Bacteria 38869
174 Ga0501074_0009759 3300049590 Bacteria 6970
175 Ga0501076_0025125 3300049592 Bacteria 4608
176 Ga0501198_000011 3300049649 Bacteria 115612
177 Ga0501222_000022 3300049662 Bacteria 66333
178 Ga0501079_0022026 3300049741 Bacteria 4882
179 Ga0501080_0007491 3300049742 Bacteria 9854
180 Ga0501083_0000293 3300049744 Bacteria 31385
181 Ga0501035_0059989 3300049822 Bacteria 3387
182 Ga0501044_0226284 3300049823 Bacteria 1820
183 nmdc:mga0k408_799_c1 3300050493 Bacteria 17316
184 nmdc:mga09592_546_c1 3300050508 Bacteria 28579
185 nmdc:mga0qj67_112937_c1 3300050509 Bacteria 2193
186 Ga0500562_002708 3300053108 Bacteria 4405
187 Ga0500586_006387 3300053145 Bacteria 3059
188 2617913772 2617270889 Bacteria 9064343
189 2644340110 2643221660 Bacteria 4208257
190 2848695536 2848694841 Bacteria 9205737
191 2849662961 2849660919 Bacteria 8251853
192 2886631867 2886627955 Bacteria 7618130
193 2913846040 2913844669 Bacteria 8381711
194 2913946672 2913939268 Bacteria 8559644
195 642602920 642555144 Bacteria 9059191
196 Ga0495686_0004519
197 Ga0070682_100002327
198 Ga0068868_100148064
199 Ga0070661_100012414
200 Ga0070669_100077030
201 Ga0070675_100053007
202 Ga0070671_100054414
203 Ga0070673_100196093
204 Ga0070681_10001079
205 Ga0068867_100000109
206 Ga0070706_100004335
207 Ga0070679_100066782
208 Ga0070693_100049767
209 Ga0070665_100066057
210 Ga0068855_100016253
211 Ga0068857_100022433
212 Ga0068854_100149518
213 Ga0068852_100025313
214 Ga0068852_100028220
215 Ga0068852_100035220
216 Ga0068864_100028404
217 Ga0068851_10020083
218 Ga0068863_100010152
219 Ga0068858_100013149
220 Ga0070717_10221288
221 Ga0075365_10006592
222 Ga0075366_10006901
223 Ga0075366_10012940
224 Ga0097621_100056814
225 Ga0068871_100003084
226 Ga0075430_100124395
227 Ga0075429_100000559
228 Ga0105240_10011009
229 Ga0105240_10187818
230 Ga0105245_10016004
231 Ga0105243_10015355
232 Ga0105241_10006815
233 Ga0105242_10003305
234 Ga0105242_10005227
235 Ga0105248_10010870
236 Ga0105248_10023834
237 Ga0105248_10179103
238 Ga0105248_10209818
239 Ga0105248_10349289
240 Ga0105237_10005128
241 Ga0105238_10189204
242 Ga0157370_10012105
243 Ga0157374_10137303
244 Ga0157378_10258484
245 Ga0157380_10117414
246 Ga0157380_10241508
247 Ga0157377_10000028
248 Ga0157379_10021953
249 Ga0213872_10000641
250 Ga0207656_10002719
251 Ga0207680_10042476
252 Ga0207684_10002942
253 Ga0207654_10045220
254 Ga0207707_10031551
255 Ga0207695_10008753
256 Ga0207671_10033671
257 Ga0207649_10004295
258 Ga0207652_10016588
259 Ga0207681_10074307
260 Ga0207694_10026346
261 Ga0207644_10020116
262 Ga0207706_10051279
263 Ga0207706_10076274
264 Ga0207686_10007737
265 Ga0207709_10008227
266 Ga0207691_10043178
267 Ga0207691_10150156
268 Ga0207711_10050422
269 Ga0207711_10068455
270 Ga0207641_10084973
271 Ga0207698_10036466
272 Ga0207698_10113190
273 Ga0268266_10010511
274 Ga0265337_1002313
275 Ga0307515_10004583
276 Ga0307515_10012915
277 Ga0265320_10002136
278 Ga0307513_10019558
279 Ga0307513_10020888
280 Ga0307509_10054327
281 Ga0307509_10058976
282 Ga0307408_100021203
283 Ga0307508_10000555
284 Ga0307514_10001100
285 Ga0316579_10011063
286 Ga0265314_10004749
287 Ga0316576_10005729
288 Ga0316576_10041149
289 Ga0316578_10015592
290 Ga0316578_10018854
291 Ga0307410_10142316
292 Ga0307412_10127118
293 Ga0316580_10010446
294 Ga0307510_10002601
295 Ga0373923_0004935
296 Ga0373946_0018011
297 Ga0316574_0018260
298 Ga0316574_0050700
299 Ga0373937_0024312
300 Ga0316584_0022308
301 Ga0316584_0068836
302 Ga0316584_0071808
303 Ga0395899_0014138
304 Ga0395899_0018721
305 Ga0395900_0009434
306 Ga0395900_0014322
307 Ga0395900_0111996
308 Ga0395900_0164794
309 Ga0395898_0021433
310 Ga0395898_0076403
311 Ga0395905_0004027
312 Ga0395905_0007250
313 Ga0395905_0023520
314 Ga0395905_0026048
315 Ga0395905_0060270
316 Ga0395905_0091963
317 Ga0395905_0253014
318 Ga0395901_0017380
319 Ga0395901_0018240
320 Ga0400484_28943
321 Ga0400490_40892
322 Ga0400485_03412
323 Ga0400485_17834
324 Ga0400488_38388
325 Ga0400486_05070
326 Ga0400486_09569
327 Ga0400483_094193
328 Ga0400483_281450
329 Ga0400489_34760
330 Ga0436361_0470283
331 Ga0436361_0996083
332 Ga0451793_0083921
333 Ga0451833_1039377
334 Ga0451847_0205519
335 Ga0451577_0033324
336 Ga0466969_0044601
337 Ga0466965_0018050
338 Ga0466966_0043455
339 Ga0466966_0088323
340 Ga0466961_0020572
341 Ga0453684_0017582
342 Ga0453684_0095449
343 Ga0466968_0025954
344 Ga0466970_0002214
345 Ga0466959_0017969
346 Ga0466959_0037157
347 Ga0451576_0003237
348 Ga0451576_0072791
349 Ga0451576_0155346
350 Ga0466958_0034447
351 Ga0495606_0007013
352 Ga0495628_0000112
353 Ga0495632_0016905
354 Ga0495625_0033325
355 Ga0495680_0041960
356 Ga0496104_0025025
357 Ga0496105_0021763
358 Ga0496109_0003512
359 Ga0496112_0003563
360 Ga0496116_0051448
361 Ga0496126_0090214
362 Ga0496126_0115979
363 Ga0501038_0037916
364 Ga0501043_0072730
365 Ga0501047_0001955
366 Ga0501070_0005337
367 Ga0501072_0098615
368 Ga0501073_0000206
369 Ga0501074_0009759
370 Ga0501076_0025125
371 Ga0501198_000011
372 Ga0501222_000022
373 Ga0501079_0022026
374 Ga0501080_0007491
375 Ga0501083_0000293
376 Ga0501035_0059989
377 Ga0501044_0226284
378 nmdc:mga0k408_799_c1
379 nmdc:mga09592_546_c1
380 nmdc:mga0qj67_112937_c1
381 Ga0500562_002708
382 Ga0500586_006387
383 2617913772
384 2644340110
385 2848695536
386 2849662961
387 2886631867
388 2913846040
389 2913946672
390 642602920

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01523

PmbA_TldD_1st

PmbA/TldA metallopeptidase domain 1

76

139

0.96

PF19289

PmbA_TldD_3rd

PmbA/TldA metallopeptidase C-terminal domain

289

539

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
1vl4-assembly1.cif.gz_B crystal structure of a putative modulator of a dna gyrase (tm0727) from thermotoga maritima msb8 at 1.95 a resolution 0.8474 2 476
1vl4-assembly1.cif.gz_B crystal structure of a putative modulator of a dna gyrase (tm0727) from thermotoga maritima msb8 at 1.95 a resolution 0.8364 2 476
5njf-assembly1.cif.gz_A e. coli microcin-processing metalloprotease tldd/e (tldd h262a mutant) with pentapeptide bound 0.8363 1 479
5njb-assembly2.cif.gz_C e. coli microcin-processing metalloprotease tldd/e with actinonin bound 0.8291 1 479
5njf-assembly2.cif.gz_C e. coli microcin-processing metalloprotease tldd/e (tldd h262a mutant) with pentapeptide bound 0.8272 1 479
ID Description Score Start End Superfamily
af_Q58403_4_217_3.30.2290.10 Alpha Beta;2-Layer Sandwich;PmbA/TldD fold;PmbA/TldD superfamily 0.8736 7 227 3.30.2290.10
af_Q58403_4_217_3.30.2290.10 Alpha Beta;2-Layer Sandwich;PmbA/TldD fold;PmbA/TldD superfamily 0.8661 7 227 3.30.2290.10
af_P71897_11_222_3.30.2290.10 Alpha Beta;2-Layer Sandwich;PmbA/TldD fold;PmbA/TldD superfamily 0.8336 3 204 3.30.2290.10
af_P71897_11_222_3.30.2290.10 Alpha Beta;2-Layer Sandwich;PmbA/TldD fold;PmbA/TldD superfamily 0.7829 3 204 3.30.2290.10
5fokA02 Mainly Beta;Beta Barrel;Maltoporin; Chain A;TonB-dependent receptor, beta-barrel domain 0.7697 137 188 2.40.170.20
ID Description Score Start End GO Terms
AF-A0A1A5X3G6-F1-model_v4 deleted 0.9852 1 429
AF-A0A1A5X3G6-F1-model_v4 deleted 0.9806 1 429
AF-A0A2E7MBA5-F1-model_v4 Peptidase C69 0.9775 1 479 GO:0005829
GO:0006508
GO:0008237
AF-A0A2E7MBA5-F1-model_v4 Peptidase C69 0.9755 1 479 GO:0005829
GO:0006508
GO:0008237
AF-A0A250KSA4-F1-model_v4 TldD/PmbA family protein 0.9693 52 479 GO:0005829
GO:0006508
GO:0008237

Map