F300389

General Info

Members Datasets Scaffolds Average Seq Length
195 140 390 275

Family's Representative Sequence

Representative Sequence 3300036401|Ga0373937_0056801|Ga0373937_0056801_2509_3420
Length 294
Sequence MPGLEPGIYSDGRVEPGHDGKEAGMQPRHVTVGGIALGNDLPLVFIVGPNTLESRAHALETAAALREIADKLKIGLIYKTSFDKANRSSLGSERGIGLNAGLPILAEVRETHAPEQCARVAEAVDVLQIPAFLCRQTDLLLAAGAAGKPVNIKKGQFLAPWDMQHAAAKIASTGNEQILLCERGASFGYNTLIVDMRALPIMARTGYPVVFDATHAVAQPGGLGDRSGGEREFGPVLARAAAAVGVAAIFLETHQDPDRAGTAEASTMLPLKALPELLETLIAFDRIAKDRPLR

Samples

Sample ID Description Type Environment
1 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
2 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
3 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
4 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
5 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
17 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
21 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
22 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
25 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
28 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
34 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
35 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
36 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
37 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
38 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
39 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
40 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
41 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
42 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
58 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
59 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
60 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
61 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
62 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
63 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
64 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
65 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
66 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
67 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
68 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
69 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
70 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
71 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
72 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
73 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
74 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
75 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
76 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
77 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
78 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
79 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
80 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
81 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
82 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
83 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
84 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
85 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
86 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
87 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
88 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
89 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
90 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
91 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
92 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
93 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
94 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
95 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
96 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
97 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
98 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
99 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
100 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
101 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
102 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
103 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
104 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
105 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
106 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
107 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
108 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
109 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
110 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
111 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
112 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
113 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
114 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
115 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
116 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
117 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
122 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
123 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
124 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
126 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
127 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
128 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
129 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
130 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
131 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
132 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
133 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
134 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
135 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
136 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
137 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
138 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
139 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
140 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.95
Metatranscriptomes 1.54
Isolates 0.51

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.1
Nodule 0
Rhizoplane 0.51
Rhizosphere 87.18
Stem 0
Stem Tuber 0
Unclassified 0.51

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0373937_0056801 3300036401 Bacteria 3595
2 Ga0055538_1000114 3300003751 Bacteria 61531
3 Ga0070675_100102123 3300005354 Bacteria 2416
4 Ga0070667_100405512 3300005367 Bacteria 1241
5 Ga0070709_10023696 3300005434 Bacteria 3608
6 Ga0070709_10042236 3300005434 Bacteria 2814
7 Ga0070714_100187737 3300005435 Bacteria 1884
8 Ga0070714_100259264 3300005435 Bacteria 1610
9 Ga0070713_100011976 3300005436 Bacteria 6345
10 Ga0070713_100078766 3300005436 Bacteria 2806
11 Ga0070713_100113128 3300005436 Bacteria 2369
12 Ga0070710_10025578 3300005437 Bacteria 3127
13 Ga0070711_100038248 3300005439 Bacteria 3225
14 Ga0070711_100069177 3300005439 Bacteria 2483
15 Ga0070711_100129085 3300005439 Bacteria 1880
16 Ga0070708_100432373 3300005445 Bacteria 1241
17 Ga0070678_100307072 3300005456 Bacteria 1350
18 Ga0070681_10001274 3300005458 Bacteria 21993
19 Ga0070681_10240486 3300005458 Bacteria 1724
20 Ga0070706_100022328 3300005467 Bacteria 5827
21 Ga0070706_100216932 3300005467 Bacteria 1786
22 Ga0070707_100003893 3300005468 Bacteria 14050
23 Ga0070698_100002963 3300005471 Bacteria 18673
24 Ga0070698_100050874 3300005471 Bacteria 4221
25 Ga0070699_100126801 3300005518 Bacteria 2247
26 Ga0070697_100059552 3300005536 Bacteria 3110
27 Ga0070697_100178369 3300005536 Bacteria 1800
28 Ga0068855_100084149 3300005563 Bacteria 3684
29 Ga0068858_100277244 3300005842 Bacteria 1596
30 Ga0068860_100064915 3300005843 Bacteria 3466
31 Ga0068862_100069252 3300005844 Bacteria 3045
32 Ga0081540_1021846 3300005983 Bacteria 3794
33 Ga0070717_10000945 3300006028 Bacteria 19338
34 Ga0070717_10215612 3300006028 Bacteria 1686
35 Ga0075368_10010769 3300006042 Bacteria 3314
36 Ga0070716_100000600 3300006173 Bacteria 15188
37 Ga0070716_100005578 3300006173 Bacteria 6108
38 Ga0070712_100032637 3300006175 Bacteria 3517
39 Ga0070712_100041216 3300006175 Bacteria 3169
40 Ga0070712_100067289 3300006175 Bacteria 2548
41 Ga0070712_100108713 3300006175 Bacteria 2065
42 Ga0075367_10000390 3300006178 Bacteria 15969
43 Ga0099795_10046267 3300007788 Bacteria 1567
44 Ga0105240_10082758 3300009093 Bacteria 3941
45 Ga0111539_10000001 3300009094 Bacteria 1035431
46 Ga0099796_10043058 3300010159 Bacteria 1537
47 Ga0105239_11000218 3300010375 Bacteria 961
48 Ga0157374_10222574 3300013296 Bacteria 1852
49 Ga0163162_10199471 3300013306 Bacteria 2129
50 Ga0163163_10189568 3300014325 Bacteria 2105
51 Ga0213873_10023103 3300021358 Bacteria 1479
52 Ga0213874_10073246 3300021377 Bacteria 1097
53 Ga0213876_10027837 3300021384 Bacteria 2981
54 Ga0213876_10029024 3300021384 Bacteria 2917
55 Ga0213875_10001622 3300021388 Bacteria 14208
56 Ga0213871_10024707 3300021441 Bacteria 1524
57 Ga0228598_1002494 3300024227 Bacteria 4008
58 Ga0228598_1011847 3300024227 Bacteria 1734
59 Ga0209784_100075 3300025224 Bacteria 139902
60 Ga0207692_10110598 3300025898 Bacteria 1523
61 Ga0207699_10025090 3300025906 Bacteria 3269
62 Ga0207684_10027209 3300025910 Bacteria 4874
63 Ga0207684_10164381 3300025910 Bacteria 1912
64 Ga0207707_10016083 3300025912 Bacteria 6526
65 Ga0207707_10155735 3300025912 Bacteria 1998
66 Ga0207695_10135454 3300025913 Bacteria 2416
67 Ga0207693_10001090 3300025915 Bacteria 24395
68 Ga0207693_10021321 3300025915 Bacteria 5150
69 Ga0207693_10039240 3300025915 Bacteria 3728
70 Ga0207693_10087824 3300025915 Bacteria 2437
71 Ga0207693_10117728 3300025915 Bacteria 2086
72 Ga0207663_10012859 3300025916 Bacteria 4536
73 Ga0207663_10228914 3300025916 Bacteria 1357
74 Ga0207652_10375348 3300025921 Bacteria 1284
75 Ga0207646_10011273 3300025922 Bacteria 8681
76 Ga0207700_10018513 3300025928 Bacteria 4683
77 Ga0207700_10028165 3300025928 Bacteria 3945
78 Ga0207700_10064452 3300025928 Bacteria 2791
79 Ga0207700_10134813 3300025928 Bacteria 2021
80 Ga0207664_10112390 3300025929 Bacteria 2267
81 Ga0207664_10144360 3300025929 Bacteria 2017
82 Ga0207665_10007690 3300025939 Bacteria 7115
83 Ga0207665_10028425 3300025939 Bacteria 3692
84 Ga0207702_10318475 3300026078 Bacteria 1481
85 Ga0207683_10339242 3300026121 Bacteria 1378
86 Ga0265760_10033596 3300031090 Bacteria 1516
87 Ga0265314_10106636 3300031711 Bacteria 1789
88 Ga0307414_10347079 3300032004 Bacteria 1273
89 Ga0316593_10022400 3300032168 Bacteria 1984
90 Ga0316592_1001070 3300033524 Bacteria 4273
91 Ga0373944_0026723 3300035089 Bacteria 1707
92 Ga0373954_0035072 3300035118 Bacteria 2325
93 Ga0373957_0009815 3300035120 Bacteria 3142
94 Ga0373943_0122152 3300035170 Bacteria 1385
95 Ga0373924_0017575 3300035410 Bacteria 2746
96 Ga0373927_0049624 3300035695 Bacteria 2714
97 Ga0373933_0025815 3300035724 Bacteria 3371
98 Ga0373947_0072158 3300035725 Bacteria 2119
99 Ga0373947_0219639 3300035725 Bacteria 1249
100 Ga0373947_0258796 3300035725 Bacteria 1153
101 Ga0373937_0133429 3300036401 Bacteria 2320
102 Ga0373937_0249081 3300036401 Bacteria 1674
103 Ga0373925_0143631 3300037068 Bacteria 1869
104 Ga0373925_0144799 3300037068 Bacteria 1862
105 Ga0395900_0757672 3300037418 Bacteria 901
106 Ga0436364_0060503 3300037853 Bacteria 15456
107 Ga0436364_0403325 3300037853 Bacteria 3271
108 Ga0436364_0539570 3300037853 Bacteria 2176
109 Ga0400490_00968 3300038726 Bacteria 93834
110 Ga0436365_0725819 3300039437 Bacteria 7632
111 Ga0436365_0918074 3300039437 Bacteria 3606
112 Ga0436360_0056223 3300039438 Bacteria 8449
113 Ga0436360_0162866 3300039438 Bacteria 1496
114 Ga0436360_1151403 3300039438 Bacteria 1279
115 Ga0436361_0122748 3300039447 Bacteria 2078
116 Ga0436361_0375763 3300039447 Bacteria 3065
117 Ga0436361_0509188 3300039447 Bacteria 1945
118 Ga0436361_0538183 3300039447 Bacteria 2353
119 Ga0436361_0617358 3300039447 Bacteria 2486
120 Ga0436361_1015032 3300039447 Bacteria 4482
121 Ga0436363_0096948 3300039450 Bacteria 888
122 Ga0436363_1266650 3300039450 Bacteria 1587
123 Ga0436363_1675837 3300039450 Bacteria 2348
124 Ga0436362_0475052 3300039453 Bacteria 3142
125 Ga0436362_0764919 3300039453 Bacteria 4086
126 Ga0436362_1049732 3300039453 Bacteria 1559
127 Ga0439461_0000064 3300041410 Bacteria 13509
128 Ga0439466_0034654 3300041411 Bacteria 1711
129 Ga0439465_0003583 3300041413 Bacteria 5065
130 Ga0439431_0000063 3300041997 Bacteria 16969
131 Ga0439442_016933 3300042002 Bacteria 1503
132 Ga0439445_0003013 3300042004 Bacteria 3769
133 Ga0439432_003683 3300042006 Bacteria 5670
134 Ga0439446_0009038 3300042156 Bacteria 2658
135 Ga0439434_0000391 3300042435 Bacteria 12476
136 Ga0466969_0000678 3300044656 Bacteria 18506
137 Ga0453683_0008255 3300044673 Bacteria 7002
138 Ga0466966_0001440 3300044684 Bacteria 15301
139 Ga0466961_0007960 3300044693 Bacteria 6754
140 Ga0466971_0003805 3300044719 Bacteria 6458
141 Ga0466957_0004365 3300044842 Bacteria 7866
142 Ga0466959_0000096 3300045049 Bacteria 55797
143 Ga0466958_0003956 3300045836 Bacteria 7773
144 Ga0495629_0079102 3300046459 Bacteria 2296
145 Ga0495651_0000225 3300046462 Bacteria 42984
146 Ga0495664_0007636 3300046477 Bacteria 6012
147 Ga0495608_0055438 3300046511 Bacteria 2619
148 Ga0495628_0356682 3300046516 Bacteria 1074
149 Ga0495640_0107698 3300046533 Bacteria 1824
150 Ga0495586_0115037 3300046535 Bacteria 1499
151 Ga0495645_0000310 3300046543 Bacteria 35179
152 Ga0495667_0014185 3300046559 Bacteria 5380
153 Ga0495667_0016643 3300046559 Bacteria 4967
154 Ga0495667_0343804 3300046559 Bacteria 943
155 Ga0495646_0037021 3300046680 Bacteria 3020
156 Ga0495670_0000022 3300046691 Bacteria 101451
157 Ga0495649_0125986 3300046694 Bacteria 1353
158 Ga0495600_0270265 3300046809 Bacteria 1078
159 Ga0495604_0122148 3300047317 Bacteria 1884
160 Ga0495604_0369116 3300047317 Bacteria 950
161 Ga0495680_0000790 3300047322 Bacteria 35393
162 Ga0495675_0082486 3300047444 Bacteria 2024
163 Ga0495684_0088764 3300047471 Bacteria 2343
164 Ga0495602_0018786 3300048088 Bacteria 6887
165 Ga0495602_0282826 3300048088 Bacteria 1221
166 Ga0496112_0612096 3300048915 Bacteria 1021
167 Ga0496119_0053770 3300048922 Bacteria 2457
168 Ga0496123_0000220 3300048926 Bacteria 115824
169 Ga0496123_0068236 3300048926 Bacteria 2241
170 Ga0501034_0039323 3300049571 Bacteria 4791
171 Ga0501036_0216942 3300049572 Bacteria 1607
172 Ga0501043_0284806 3300049579 Bacteria 1266
173 Ga0501043_0324342 3300049579 Bacteria 1174
174 Ga0501046_0187875 3300049580 Bacteria 1542
175 Ga0501072_0308494 3300049588 Bacteria 1258
176 Ga0501076_0043954 3300049592 Bacteria 3522
177 Ga0501081_0057801 3300049743 Bacteria 2683
178 Ga0501035_0072837 3300049822 Bacteria 3040
179 Ga0501044_0240099 3300049823 Bacteria 1756
180 nmdc:mga06z11_247_c1 3300050494 Bacteria 21101
181 nmdc:mga04h51_3761_c1 3300050495 Bacteria 3719
182 nmdc:mga0qj67_96221_c1 3300050509 Bacteria 2384
183 nmdc:mga06r32_104771_c1 3300050510 Bacteria 2778
184 nmdc:mga06r32_203142_c1 3300050510 Unclassified 1969
185 nmdc:mga08y16_3_c1 3300050511 Bacteria 936907
186 nmdc:mga0n895_189058_c1 3300050512 Bacteria 2090
187 nmdc:mga0a205_18730_c1 3300050515 Bacteria 6516
188 Ga0495601_0026247 3300053077 Bacteria 3595
189 Ga0495612_0002202 3300053078 Bacteria 8013
190 Ga0495619_0020169 3300053085 Bacteria 4243
191 Ga0500608_001072 3300053122 Bacteria 9765
192 Ga0500642_0001864 3300053130 Bacteria 6089
193 Ga0501082_0000084 3300060353 Bacteria 70644
194 Ga0466962_0001656 3300061719 Bacteria 10454
195 2894775180 2894772417 Bacteria 5305674
196 Ga0373937_0056801
197 Ga0055538_1000114
198 Ga0070675_100102123
199 Ga0070667_100405512
200 Ga0070709_10023696
201 Ga0070709_10042236
202 Ga0070714_100187737
203 Ga0070714_100259264
204 Ga0070713_100011976
205 Ga0070713_100078766
206 Ga0070713_100113128
207 Ga0070710_10025578
208 Ga0070711_100038248
209 Ga0070711_100069177
210 Ga0070711_100129085
211 Ga0070708_100432373
212 Ga0070678_100307072
213 Ga0070681_10001274
214 Ga0070681_10240486
215 Ga0070706_100022328
216 Ga0070706_100216932
217 Ga0070707_100003893
218 Ga0070698_100002963
219 Ga0070698_100050874
220 Ga0070699_100126801
221 Ga0070697_100059552
222 Ga0070697_100178369
223 Ga0068855_100084149
224 Ga0068858_100277244
225 Ga0068860_100064915
226 Ga0068862_100069252
227 Ga0081540_1021846
228 Ga0070717_10000945
229 Ga0070717_10215612
230 Ga0075368_10010769
231 Ga0070716_100000600
232 Ga0070716_100005578
233 Ga0070712_100032637
234 Ga0070712_100041216
235 Ga0070712_100067289
236 Ga0070712_100108713
237 Ga0075367_10000390
238 Ga0099795_10046267
239 Ga0105240_10082758
240 Ga0111539_10000001
241 Ga0099796_10043058
242 Ga0105239_11000218
243 Ga0157374_10222574
244 Ga0163162_10199471
245 Ga0163163_10189568
246 Ga0213873_10023103
247 Ga0213874_10073246
248 Ga0213876_10027837
249 Ga0213876_10029024
250 Ga0213875_10001622
251 Ga0213871_10024707
252 Ga0228598_1002494
253 Ga0228598_1011847
254 Ga0209784_100075
255 Ga0207692_10110598
256 Ga0207699_10025090
257 Ga0207684_10027209
258 Ga0207684_10164381
259 Ga0207707_10016083
260 Ga0207707_10155735
261 Ga0207695_10135454
262 Ga0207693_10001090
263 Ga0207693_10021321
264 Ga0207693_10039240
265 Ga0207693_10087824
266 Ga0207693_10117728
267 Ga0207663_10012859
268 Ga0207663_10228914
269 Ga0207652_10375348
270 Ga0207646_10011273
271 Ga0207700_10018513
272 Ga0207700_10028165
273 Ga0207700_10064452
274 Ga0207700_10134813
275 Ga0207664_10112390
276 Ga0207664_10144360
277 Ga0207665_10007690
278 Ga0207665_10028425
279 Ga0207702_10318475
280 Ga0207683_10339242
281 Ga0265760_10033596
282 Ga0265314_10106636
283 Ga0307414_10347079
284 Ga0316593_10022400
285 Ga0316592_1001070
286 Ga0373944_0026723
287 Ga0373954_0035072
288 Ga0373957_0009815
289 Ga0373943_0122152
290 Ga0373924_0017575
291 Ga0373927_0049624
292 Ga0373933_0025815
293 Ga0373947_0072158
294 Ga0373947_0219639
295 Ga0373947_0258796
296 Ga0373937_0133429
297 Ga0373937_0249081
298 Ga0373925_0143631
299 Ga0373925_0144799
300 Ga0395900_0757672
301 Ga0436364_0060503
302 Ga0436364_0403325
303 Ga0436364_0539570
304 Ga0400490_00968
305 Ga0436365_0725819
306 Ga0436365_0918074
307 Ga0436360_0056223
308 Ga0436360_0162866
309 Ga0436360_1151403
310 Ga0436361_0122748
311 Ga0436361_0375763
312 Ga0436361_0509188
313 Ga0436361_0538183
314 Ga0436361_0617358
315 Ga0436361_1015032
316 Ga0436363_0096948
317 Ga0436363_1266650
318 Ga0436363_1675837
319 Ga0436362_0475052
320 Ga0436362_0764919
321 Ga0436362_1049732
322 Ga0439461_0000064
323 Ga0439466_0034654
324 Ga0439465_0003583
325 Ga0439431_0000063
326 Ga0439442_016933
327 Ga0439445_0003013
328 Ga0439432_003683
329 Ga0439446_0009038
330 Ga0439434_0000391
331 Ga0466969_0000678
332 Ga0453683_0008255
333 Ga0466966_0001440
334 Ga0466961_0007960
335 Ga0466971_0003805
336 Ga0466957_0004365
337 Ga0466959_0000096
338 Ga0466958_0003956
339 Ga0495629_0079102
340 Ga0495651_0000225
341 Ga0495664_0007636
342 Ga0495608_0055438
343 Ga0495628_0356682
344 Ga0495640_0107698
345 Ga0495586_0115037
346 Ga0495645_0000310
347 Ga0495667_0014185
348 Ga0495667_0016643
349 Ga0495667_0343804
350 Ga0495646_0037021
351 Ga0495670_0000022
352 Ga0495649_0125986
353 Ga0495600_0270265
354 Ga0495604_0122148
355 Ga0495604_0369116
356 Ga0495680_0000790
357 Ga0495675_0082486
358 Ga0495684_0088764
359 Ga0495602_0018786
360 Ga0495602_0282826
361 Ga0496112_0612096
362 Ga0496119_0053770
363 Ga0496123_0000220
364 Ga0496123_0068236
365 Ga0501034_0039323
366 Ga0501036_0216942
367 Ga0501043_0284806
368 Ga0501043_0324342
369 Ga0501046_0187875
370 Ga0501072_0308494
371 Ga0501076_0043954
372 Ga0501081_0057801
373 Ga0501035_0072837
374 Ga0501044_0240099
375 nmdc:mga06z11_247_c1
376 nmdc:mga04h51_3761_c1
377 nmdc:mga0qj67_96221_c1
378 nmdc:mga06r32_104771_c1
379 nmdc:mga06r32_203142_c1
380 nmdc:mga08y16_3_c1
381 nmdc:mga0n895_189058_c1
382 nmdc:mga0a205_18730_c1
383 Ga0495601_0026247
384 Ga0495612_0002202
385 Ga0495619_0020169
386 Ga0500608_001072
387 Ga0500642_0001864
388 Ga0501082_0000084
389 Ga0466962_0001656
390 2894775180

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00793

DAHP_synth_1

DAHP synthetase I family

20

289

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
6bng-assembly1.cif.gz_A-2 structure of 2-dehydro-3-deoxyphosphooctonate aldolase from acinetobacter baumannii 0.9874 3 274
3fs2-assembly1.cif.gz_A crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from bruciella melitensis at 1.85a resolution 0.9859 3 274
3tmq-assembly1.cif.gz_A crystal structure of a 2-dehydro-3-deoxyphosphooctonate aldolase from burkholderia pseudomallei in complex with d-arabinose-5-phosphate 0.9828 2 274
2nxi-assembly1.cif.gz_B structural and mechanistic changes along an engineered path from metallo to non-metallo kdo8p synthase. 0.9811 18 273
6bng-assembly1.cif.gz_B-2 structure of 2-dehydro-3-deoxyphosphooctonate aldolase from acinetobacter baumannii 0.9809 3 274
ID Description Score Start End Superfamily
1fwtA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9795 16 273 3.20.20.70
1o60D00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9647 2 274 3.20.20.70
1fwtA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9575 16 273 3.20.20.70
1o60D00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9357 2 274 3.20.20.70
4z1aA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9247 18 270 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A2M7AYV9-F1-model_v4 3-deoxy-8-phosphooctulonate synthase (EC 2.5.1.55) 0.994 34 264 GO:0005737
GO:0008676
GO:0009103
AF-A0A509LHB6-F1-model_v4 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthase) (KDO-8-phosphate synthase) (KDO 8-P synthase) (KDOPS) (Phospho-2-dehydro-3-deoxyoctonate aldolase) 0.9938 18 271 GO:0005737
GO:0008676
GO:0019294
AF-A0A645DU11-F1-model_v4 3-deoxy-8-phosphooctulonate synthase (EC 2.5.1.55) 0.9933 41 274 GO:0005737
GO:0008676
GO:0009058
AF-A0A1D8S3W6-F1-model_v4 3-deoxy-8-phosphooctulonate synthase (EC 2.5.1.55) 0.9932 26 273 GO:0005737
GO:0008676
GO:0009058
AF-A8GUR8-F1-model_v4 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthase) (KDO-8-phosphate synthase) (KDO 8-P synthase) (KDOPS) (Phospho-2-dehydro-3-deoxyoctonate aldolase) 0.9931 2 274 GO:0005737
GO:0008676
GO:0019294

Map