F287870

General Info

Members Datasets Scaffolds Average Seq Length
187 136 374 448

Family's Representative Sequence

Representative Sequence 3300031090|Ga0265760_10000848|Ga0265760_100008485
Length 482
Sequence VSETRSETCSPASPVPHDFPAPIATPCGESALLRDWDNQFVWHPFTPMLAYRDEQAPIIEAADGFFLIDIEGHRYLDGISSLWCNVHGHRVPEIDRAIREQLDRVSHTTLLGLSSVPSIELARALVARAPRGLTKVFYSDSGATAVEVALKIAYQYHAQKTGGAEGTRRDRFLCLGSAYHGDTLGTVSVGNIAQFHSAYRDLLFQTVTIPSPVAFRTPTGYTPAAYLEHCFAELERLIVENRNRAAGFIIEPLVQGAAGMLVHPPGYLARVRALTREHGIPLIADEVAVGFGRTGTLFACEQENVSPDLLCMAKGLTGGYLPLAATLATDEIYNAFLARPEEGKTFFHGHTYTGNALACAAALASLRLIDENQVVDHVRANAQRIEARLSAIKNSPVVGDIRQKGTMVGIELVRDRTTNEAFPAAQRMGHQVTLAARKRGVILRPLGDVVVLMPAPAMPAELIDRLCDVAIDAIEEATAAVR

Samples

Sample ID Description Type Environment
1 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
2 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
5 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
11 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
19 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
20 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
21 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
22 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
29 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
30 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
31 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
34 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
35 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
40 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
43 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
44 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
60 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
62 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
63 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
64 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
65 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
66 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
67 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
68 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
69 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
70 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
71 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
72 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
73 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
74 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
75 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
76 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
77 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
78 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
79 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
80 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
81 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
82 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
83 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
84 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
85 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
86 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
87 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
88 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
89 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
90 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
91 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
92 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
93 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
108 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
109 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
110 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
111 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
112 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
113 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
114 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
115 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
116 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
117 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
118 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
120 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
121 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
122 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
123 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
124 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
125 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
126 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
127 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
128 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
129 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
130 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
131 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
132 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
133 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
134 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
135 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
136 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.47
Metatranscriptomes 0.53
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.67
Nodule 0
Rhizoplane 2.14
Rhizosphere 93.58
Stem 0
Stem Tuber 0
Unclassified 10.16

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265760_10000848 3300031090 Bacteria 8814
2 Ga0065714_10092628 3300005288 Bacteria 1871
3 Ga0065704_10004106 3300005289 Bacteria 4570
4 Ga0065712_10072161 3300005290 Bacteria 4874
5 Ga0065715_10092130 3300005293 Bacteria 5314
6 Ga0070670_100046381 3300005331 Unclassified 3736
7 Ga0070689_100012940 3300005340 Bacteria 6026
8 Ga0070669_100062428 3300005353 Unclassified 2739
9 Ga0070674_100031302 3300005356 Unclassified 3524
10 Ga0070694_100015560 3300005444 Unclassified 4779
11 Ga0070663_100036966 3300005455 Unclassified 3396
12 Ga0070678_100032917 3300005456 Unclassified 3593
13 Ga0070681_10068562 3300005458 Unclassified 3513
14 Ga0070706_100000048 3300005467 Bacteria 142843
15 Ga0070707_100027920 3300005468 Bacteria 5368
16 Ga0070699_100099204 3300005518 Bacteria 2552
17 Ga0070679_100033702 3300005530 Bacteria 5071
18 Ga0070697_100021582 3300005536 Bacteria 5102
19 Ga0070697_100045439 3300005536 Bacteria 3559
20 Ga0070672_100067328 3300005543 Unclassified 2837
21 Ga0070695_100051112 3300005545 Bacteria 2651
22 Ga0070696_100020071 3300005546 Unclassified 4531
23 Ga0070704_100149603 3300005549 Unclassified 1834
24 Ga0068855_100019093 3300005563 Bacteria 8239
25 Ga0070664_100058527 3300005564 Bacteria 3277
26 Ga0068861_100053342 3300005719 Bacteria 3075
27 Ga0068860_100002780 3300005843 Bacteria 18197
28 Ga0081455_10000077 3300005937 Bacteria 105276
29 Ga0070717_10102619 3300006028 Bacteria 2430
30 Ga0075430_100099556 3300006846 Bacteria 2428
31 Ga0075433_10012195 3300006852 Bacteria 6932
32 Ga0075434_100033032 3300006871 Bacteria 5105
33 Ga0075434_100059273 3300006871 Unclassified 3805
34 Ga0075429_100022152 3300006880 Bacteria 5511
35 Ga0075429_100036965 3300006880 Bacteria 4250
36 Ga0068865_100048847 3300006881 Unclassified 2914
37 Ga0075436_100057709 3300006914 Bacteria 2681
38 Ga0075435_100027900 3300007076 Bacteria 4421
39 Ga0075435_100039012 3300007076 Unclassified 3789
40 Ga0075435_100083130 3300007076 Bacteria 2632
41 Ga0075435_100083653 3300007076 Bacteria 2624
42 Ga0075435_100123220 3300007076 Bacteria 2164
43 Ga0105240_10148756 3300009093 Unclassified 2791
44 Ga0111539_10009673 3300009094 Bacteria 12167
45 Ga0111539_10241856 3300009094 Bacteria 2101
46 Ga0105237_10111468 3300009545 Bacteria 2728
47 Ga0157374_10182288 3300013296 Bacteria 2051
48 Ga0163162_10334767 3300013306 Bacteria 1646
49 Ga0157372_10064241 3300013307 Bacteria 4118
50 Ga0157380_10180517 3300014326 Bacteria 1854
51 Ga0157377_10069409 3300014745 Bacteria 2033
52 Ga0207688_10065712 3300025901 Bacteria 2050
53 Ga0207645_10003531 3300025907 Bacteria 11827
54 Ga0207684_10000121 3300025910 Bacteria 143066
55 Ga0207684_10186271 3300025910 Bacteria 1790
56 Ga0207707_10014338 3300025912 Bacteria 6902
57 Ga0207660_10035066 3300025917 Bacteria 3480
58 Ga0207657_10054310 3300025919 Unclassified 3464
59 Ga0207652_10025148 3300025921 Bacteria 4947
60 Ga0207646_10030327 3300025922 Bacteria 4903
61 Ga0207690_10030233 3300025932 Bacteria 3453
62 Ga0207706_10013925 3300025933 Bacteria 7293
63 Ga0207704_10150058 3300025938 Unclassified 1643
64 Ga0207691_10033944 3300025940 Bacteria 4749
65 Ga0207658_10062798 3300025986 Unclassified 2781
66 Ga0207641_10012903 3300026088 Bacteria 6855
67 Ga0207683_10004111 3300026121 Bacteria 12579
68 Ga0207428_10008588 3300027907 Bacteria 9219
69 Ga0268264_10013350 3300028381 Bacteria 6760
70 Ga0265323_10032664 3300028653 Bacteria 1930
71 Ga0265336_10022284 3300028666 Bacteria 2017
72 Ga0265338_10015242 3300028800 Bacteria 8468
73 Ga0265339_10004697 3300031249 Bacteria 9268
74 Ga0265316_10006783 3300031344 Bacteria 10893
75 Ga0307513_10008413 3300031456 Bacteria 13214
76 Ga0307509_10010668 3300031507 Bacteria 11210
77 Ga0307408_100021522 3300031548 Bacteria 4365
78 Ga0265342_10000098 3300031712 Bacteria 96183
79 Ga0307409_100000845 3300031995 Bacteria 14109
80 Ga0307416_100001698 3300032002 Bacteria 12190
81 Ga0307414_10055396 3300032004 Bacteria 2776
82 Ga0307411_10154421 3300032005 Bacteria 1710
83 Ga0307415_100014209 3300032126 Bacteria 4673
84 Ga0373949_0000254 3300035090 Bacteria 20104
85 Ga0373936_0000015 3300035113 Bacteria 200263
86 Ga0373961_0000103 3300035241 Bacteria 44859
87 Ga0373931_0012308 3300035691 Bacteria 4143
88 Ga0436363_0401335 3300039450 Bacteria 3210
89 Ga0439455_0025731 3300042012 Bacteria 1432
90 Ga0466966_0049413 3300044684 Bacteria 2679
91 Ga0466961_0027909 3300044693 Bacteria 3629
92 Ga0466971_0002803 3300044719 Bacteria 7375
93 Ga0466968_0004483 3300044735 Bacteria 5222
94 Ga0466968_0027194 3300044735 Bacteria 2353
95 Ga0466970_0058148 3300044765 Bacteria 2069
96 Ga0466959_0002429 3300045049 Bacteria 11905
97 Ga0466958_0007896 3300045836 Bacteria 5882
98 Ga0495580_0012577 3300046472 Bacteria 6485
99 Ga0495580_0066417 3300046472 Bacteria 2525
100 Ga0495686_0001672 3300047472 Bacteria 23056
101 Ga0495686_0037191 3300047472 Bacteria 3120
102 Ga0496103_0102698 3300048906 Unclassified 1811
103 Ga0496108_0215608 3300048911 Bacteria 1667
104 Ga0496112_0011970 3300048915 Bacteria 7952
105 Ga0496112_0038997 3300048915 Unclassified 4640
106 Ga0501031_0005236 3300049568 Bacteria 8454
107 Ga0501031_0016565 3300049568 Bacteria 4787
108 Ga0501031_0018878 3300049568 Bacteria 4489
109 Ga0501032_0029732 3300049569 Bacteria 3747
110 Ga0501032_0038518 3300049569 Bacteria 3256
111 Ga0501032_0052235 3300049569 Bacteria 2754
112 Ga0501033_0024917 3300049570 Bacteria 4509
113 Ga0501034_0064926 3300049571 Bacteria 3664
114 Ga0501034_0117414 3300049571 Bacteria 2648
115 Ga0501036_0012416 3300049572 Bacteria 7057
116 Ga0501036_0016548 3300049572 Bacteria 6159
117 Ga0501036_0130084 3300049572 Bacteria 2125
118 Ga0501036_0239268 3300049572 Bacteria 1523
119 Ga0501037_0002713 3300049573 Bacteria 12801
120 Ga0501037_0052902 3300049573 Bacteria 2969
121 Ga0501038_0020270 3300049574 Bacteria 5981
122 Ga0501038_0057452 3300049574 Bacteria 3341
123 Ga0501038_0062587 3300049574 Bacteria 3179
124 Ga0501039_0002311 3300049575 Bacteria 14155
125 Ga0501039_0004771 3300049575 Bacteria 10271
126 Ga0501039_0017144 3300049575 Bacteria 5554
127 Ga0501040_0002154 3300049576 Bacteria 12706
128 Ga0501041_0001854 3300049577 Bacteria 11834
129 Ga0501041_0071787 3300049577 Bacteria 2125
130 Ga0501042_0001953 3300049578 Bacteria 12420
131 Ga0501042_0030553 3300049578 Bacteria 3806
132 Ga0501042_0056551 3300049578 Bacteria 2799
133 Ga0501042_0074713 3300049578 Bacteria 2426
134 Ga0501043_0032966 3300049579 Bacteria 4074
135 Ga0501043_0130721 3300049579 Bacteria 1967
136 Ga0501046_0006313 3300049580 Bacteria 10510
137 Ga0501046_0072646 3300049580 Bacteria 2670
138 Ga0501048_0018268 3300049582 Bacteria 5158
139 Ga0501069_0030581 3300049585 Bacteria 2957
140 Ga0501070_0026469 3300049586 Bacteria 4864
141 Ga0501070_0034352 3300049586 Bacteria 4240
142 Ga0501070_0045892 3300049586 Bacteria 3633
143 Ga0501072_0014825 3300049588 Bacteria 5976
144 Ga0501072_0058935 3300049588 Bacteria 3026
145 Ga0501073_0036342 3300049589 Bacteria 3500
146 Ga0501073_0173080 3300049589 Bacteria 1494
147 Ga0501075_0003044 3300049591 Bacteria 11200
148 Ga0501075_0014656 3300049591 Bacteria 5618
149 Ga0501076_0002007 3300049592 Bacteria 13921
150 Ga0501076_0109948 3300049592 Bacteria 2228
151 Ga0501077_0001214 3300049593 Bacteria 15580
152 Ga0501079_0009339 3300049741 Bacteria 7431
153 Ga0501080_0115439 3300049742 Bacteria 2489
154 Ga0501081_0011741 3300049743 Bacteria 5734
155 Ga0501083_0023101 3300049744 Bacteria 4315
156 Ga0501035_0019114 3300049822 Bacteria 6307
157 Ga0501035_0047919 3300049822 Bacteria 3833
158 Ga0501044_0052683 3300049823 Bacteria 4191
159 nmdc:mga05p37_70735_c1 3300050507 Bacteria 4292
160 nmdc:mga09592_32827_c1 3300050508 Bacteria 4328
161 nmdc:mga0qj67_69159_c1 3300050509 Bacteria 2815
162 nmdc:mga06r32_13672_c1 3300050510 Bacteria 7361
163 nmdc:mga08y16_11361_c1 3300050511 Bacteria 9357
164 nmdc:mga0n895_25362_c1 3300050512 Bacteria 5600
165 nmdc:mga0n895_295011_c1 3300050512 Bacteria 1644
166 nmdc:mga0n895_42583_c1 3300050512 Bacteria 4418
167 nmdc:mga0n895_73638_c1 3300050512 Bacteria 3391
168 nmdc:mga0n895_97902_c1 3300050512 Bacteria 2940
169 nmdc:mga0rr50_34203_c1 3300050513 Bacteria 3638
170 nmdc:mga0rr50_82568_c1 3300050513 Bacteria 2482
171 nmdc:mga08x19_48900_c1 3300050514 Bacteria 2710
172 nmdc:mga08x19_7873_c1 3300050514 Bacteria 6330
173 nmdc:mga0a205_3235_c1 3300050515 Bacteria 14479
174 nmdc:mga0a205_85521_c1 3300050515 Bacteria 3045
175 nmdc:mga0a205_9534_c1 3300050515 Bacteria 8881
176 Ga0500566_0002795 3300053094 Bacteria 10397
177 Ga0500640_000052 3300053095 Bacteria 17878
178 Ga0500595_000102 3300053119 Bacteria 58147
179 Ga0500614_000334 3300053123 Bacteria 12174
180 Ga0500655_002519 3300053133 Bacteria 3329
181 Ga0501084_0012522 3300054114 Bacteria 7025
182 Ga0501084_0076453 3300054114 Bacteria 2806
183 Ga0501082_0003250 3300060353 Bacteria 14181
184 Ga0501082_0007512 3300060353 Bacteria 9406
185 Ga0501082_0070145 3300060353 Bacteria 3018
186 Ga0530510_0001320 3300061734 Bacteria 16571
187 Ga0530510_0154794 3300061734 Bacteria 1694
188 Ga0265760_10000848
189 Ga0065714_10092628
190 Ga0065704_10004106
191 Ga0065712_10072161
192 Ga0065715_10092130
193 Ga0070670_100046381
194 Ga0070689_100012940
195 Ga0070669_100062428
196 Ga0070674_100031302
197 Ga0070694_100015560
198 Ga0070663_100036966
199 Ga0070678_100032917
200 Ga0070681_10068562
201 Ga0070706_100000048
202 Ga0070707_100027920
203 Ga0070699_100099204
204 Ga0070679_100033702
205 Ga0070697_100021582
206 Ga0070697_100045439
207 Ga0070672_100067328
208 Ga0070695_100051112
209 Ga0070696_100020071
210 Ga0070704_100149603
211 Ga0068855_100019093
212 Ga0070664_100058527
213 Ga0068861_100053342
214 Ga0068860_100002780
215 Ga0081455_10000077
216 Ga0070717_10102619
217 Ga0075430_100099556
218 Ga0075433_10012195
219 Ga0075434_100033032
220 Ga0075434_100059273
221 Ga0075429_100022152
222 Ga0075429_100036965
223 Ga0068865_100048847
224 Ga0075436_100057709
225 Ga0075435_100027900
226 Ga0075435_100039012
227 Ga0075435_100083130
228 Ga0075435_100083653
229 Ga0075435_100123220
230 Ga0105240_10148756
231 Ga0111539_10009673
232 Ga0111539_10241856
233 Ga0105237_10111468
234 Ga0157374_10182288
235 Ga0163162_10334767
236 Ga0157372_10064241
237 Ga0157380_10180517
238 Ga0157377_10069409
239 Ga0207688_10065712
240 Ga0207645_10003531
241 Ga0207684_10000121
242 Ga0207684_10186271
243 Ga0207707_10014338
244 Ga0207660_10035066
245 Ga0207657_10054310
246 Ga0207652_10025148
247 Ga0207646_10030327
248 Ga0207690_10030233
249 Ga0207706_10013925
250 Ga0207704_10150058
251 Ga0207691_10033944
252 Ga0207658_10062798
253 Ga0207641_10012903
254 Ga0207683_10004111
255 Ga0207428_10008588
256 Ga0268264_10013350
257 Ga0265323_10032664
258 Ga0265336_10022284
259 Ga0265338_10015242
260 Ga0265339_10004697
261 Ga0265316_10006783
262 Ga0307513_10008413
263 Ga0307509_10010668
264 Ga0307408_100021522
265 Ga0265342_10000098
266 Ga0307409_100000845
267 Ga0307416_100001698
268 Ga0307414_10055396
269 Ga0307411_10154421
270 Ga0307415_100014209
271 Ga0373949_0000254
272 Ga0373936_0000015
273 Ga0373961_0000103
274 Ga0373931_0012308
275 Ga0436363_0401335
276 Ga0439455_0025731
277 Ga0466966_0049413
278 Ga0466961_0027909
279 Ga0466971_0002803
280 Ga0466968_0004483
281 Ga0466968_0027194
282 Ga0466970_0058148
283 Ga0466959_0002429
284 Ga0466958_0007896
285 Ga0495580_0012577
286 Ga0495580_0066417
287 Ga0495686_0001672
288 Ga0495686_0037191
289 Ga0496103_0102698
290 Ga0496108_0215608
291 Ga0496112_0011970
292 Ga0496112_0038997
293 Ga0501031_0005236
294 Ga0501031_0016565
295 Ga0501031_0018878
296 Ga0501032_0029732
297 Ga0501032_0038518
298 Ga0501032_0052235
299 Ga0501033_0024917
300 Ga0501034_0064926
301 Ga0501034_0117414
302 Ga0501036_0012416
303 Ga0501036_0016548
304 Ga0501036_0130084
305 Ga0501036_0239268
306 Ga0501037_0002713
307 Ga0501037_0052902
308 Ga0501038_0020270
309 Ga0501038_0057452
310 Ga0501038_0062587
311 Ga0501039_0002311
312 Ga0501039_0004771
313 Ga0501039_0017144
314 Ga0501040_0002154
315 Ga0501041_0001854
316 Ga0501041_0071787
317 Ga0501042_0001953
318 Ga0501042_0030553
319 Ga0501042_0056551
320 Ga0501042_0074713
321 Ga0501043_0032966
322 Ga0501043_0130721
323 Ga0501046_0006313
324 Ga0501046_0072646
325 Ga0501048_0018268
326 Ga0501069_0030581
327 Ga0501070_0026469
328 Ga0501070_0034352
329 Ga0501070_0045892
330 Ga0501072_0014825
331 Ga0501072_0058935
332 Ga0501073_0036342
333 Ga0501073_0173080
334 Ga0501075_0003044
335 Ga0501075_0014656
336 Ga0501076_0002007
337 Ga0501076_0109948
338 Ga0501077_0001214
339 Ga0501079_0009339
340 Ga0501080_0115439
341 Ga0501081_0011741
342 Ga0501083_0023101
343 Ga0501035_0019114
344 Ga0501035_0047919
345 Ga0501044_0052683
346 nmdc:mga05p37_70735_c1
347 nmdc:mga09592_32827_c1
348 nmdc:mga0qj67_69159_c1
349 nmdc:mga06r32_13672_c1
350 nmdc:mga08y16_11361_c1
351 nmdc:mga0n895_25362_c1
352 nmdc:mga0n895_295011_c1
353 nmdc:mga0n895_42583_c1
354 nmdc:mga0n895_73638_c1
355 nmdc:mga0n895_97902_c1
356 nmdc:mga0rr50_34203_c1
357 nmdc:mga0rr50_82568_c1
358 nmdc:mga08x19_48900_c1
359 nmdc:mga08x19_7873_c1
360 nmdc:mga0a205_3235_c1
361 nmdc:mga0a205_85521_c1
362 nmdc:mga0a205_9534_c1
363 Ga0500566_0002795
364 Ga0500640_000052
365 Ga0500595_000102
366 Ga0500614_000334
367 Ga0500655_002519
368 Ga0501084_0012522
369 Ga0501084_0076453
370 Ga0501082_0003250
371 Ga0501082_0007512
372 Ga0501082_0070145
373 Ga0530510_0001320
374 Ga0530510_0154794

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00202

Aminotran_3

Aminotransferase class-III

50

474

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
6wnn-assembly1.cif.gz_A bacillus subtilis bioa in complex with amino donor l-lys 0.9311 8 450
3dod-assembly1.cif.gz_B crystal structure of plp bound 7,8-diaminopelargonic acid synthase in bacillus subtilis 0.9258 8 450
6wnn-assembly1.cif.gz_A bacillus subtilis bioa in complex with amino donor l-lys 0.9208 8 450
6wnn-assembly1.cif.gz_B bacillus subtilis bioa in complex with amino donor l-lys 0.9199 8 450
3dod-assembly1.cif.gz_B crystal structure of plp bound 7,8-diaminopelargonic acid synthase in bacillus subtilis 0.9152 8 450
ID Description Score Start End Superfamily
af_Q58696_369_458_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9715 359 445 3.90.1150.10
af_Q58696_356_454_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9663 346 442 3.90.1150.10
af_Q59ZF3_365_473_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.945 351 443 3.90.1150.10
5ztxA01 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.944 343 450 3.90.1150.10
af_Q2FVJ6_359_446_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9395 359 445 3.90.1150.10
ID Description Score Start End GO Terms
AF-N6V2D0-F1-model_v4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.9746 343 448 GO:0005829
GO:0008483
GO:0030170
AF-A0A3B9ZCN6-F1-model_v4 L-lysine--8-amino-7-oxononanoate transaminase (EC 2.6.1.62) 0.9656 249 450 GO:0004015
GO:0009102
GO:0030170
AF-A0A7X7FMS5-F1-model_v4 Aminotransferase class III-fold pyridoxal phosphate-dependent enzyme 0.9619 292 450 GO:0004015
GO:0009102
GO:0030170
AF-A0A355GLI4-F1-model_v4 Adenosylmethionine--8-amino-7-oxononanoate transaminase (EC 2.6.1.62) 0.9557 316 450 GO:0004015
GO:0009102
GO:0030170
AF-A0A259CED8-F1-model_v4 Aspartate aminotransferase family protein 0.9539 328 450 GO:0008483
GO:0030170

Map