F282262

General Info

Members Datasets Scaffolds Average Seq Length
184 148 368 257

Family's Representative Sequence

Representative Sequence 3300005618|Ga0068864_100311596|Ga0068864_1003115962
Length 277
Sequence MRVYIIGAGPGDPQLLTLRGAHLIGTCPVVLYTGSLVPREVLAHARPDAQVIDSSGLTLDEILAIITAARDADHDVARVHTGDPVIFGSTAEQMRRMAELDIAYEIVPGVSSFTAAAAVLGRELTLPELGQTVILTRAEGRTPMPPGERLEDLARHQATLALFLSITLMGDVTRSLIPSYGADCPVIVVHRATWPDQQIVRGTLGDIAEKVRAAKIRSQSIILVGRVLTATGFAESRLYAADFTHRFRRGHRRAGAPAETADPDGADAPGIPGAGDA

Samples

Sample ID Description Type Environment
1 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
2 3300000546 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled Metagenome Rhizosphere
3 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
11 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
12 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
13 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
21 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
22 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
23 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
24 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
25 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
26 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
29 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
30 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
31 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
32 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
33 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
41 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
42 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
43 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
44 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
45 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
62 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
65 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
66 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
67 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
68 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
69 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
70 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
71 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
72 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
73 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
74 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
75 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
76 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
77 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
78 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
79 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
80 3300033547 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1 Metagenome Unclassified
81 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
82 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
83 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
84 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
85 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
86 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
87 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
88 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
89 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
90 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
91 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
92 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
93 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
94 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
95 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
96 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
97 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
98 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
99 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
100 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
101 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
102 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
103 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
104 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
111 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
112 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
113 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
114 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
115 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
116 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
117 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
118 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
119 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
120 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
121 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
122 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
123 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
124 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
125 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
126 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
127 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
128 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
129 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
130 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
131 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
132 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
133 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
134 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
135 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
136 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
137 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
138 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
139 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
140 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
141 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
142 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
143 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere
144 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
145 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
146 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
147 2511231221 Azospirillum lipoferum 4B Isolate Rhizosphere
148 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.91
Metatranscriptomes 0
Isolates 1.09

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.87
Nodule 0
Rhizoplane 1.09
Rhizosphere 80.98
Stem 0
Stem Tuber 0
Unclassified 2.17

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068864_100311596 3300005618 Bacteria 1476
2 LJNas_1001036 3300000546 Bacteria 4392
3 JGI25151J46595_10000124 3300003187 Bacteria 105038
4 rootL2_10195264 3300003322 Bacteria 1245
5 Ga0055542_1021332 3300003762 Bacteria 936
6 Ga0068869_100099972 3300005334 Bacteria 2193
7 Ga0070682_100061612 3300005337 Bacteria 2375
8 Ga0070689_100007816 3300005340 Bacteria 7494
9 Ga0070689_100014013 3300005340 Bacteria 5817
10 Ga0070713_100075562 3300005436 Bacteria 2858
11 Ga0070710_10254487 3300005437 Bacteria 1130
12 Ga0070701_10069216 3300005438 Bacteria 1882
13 Ga0070705_100005555 3300005440 Bacteria 6154
14 Ga0070705_100400436 3300005440 Bacteria 1016
15 Ga0070694_100257538 3300005444 Bacteria 1322
16 Ga0070681_10231526 3300005458 Bacteria 1762
17 Ga0068867_100079185 3300005459 Bacteria 2473
18 Ga0070707_100000095 3300005468 Bacteria 79610
19 Ga0070699_100005766 3300005518 Bacteria 10837
20 Ga0070697_100006962 3300005536 Bacteria 8795
21 Ga0068853_100481755 3300005539 Bacteria 1170
22 Ga0070696_100068332 3300005546 Bacteria 2495
23 Ga0070702_100040726 3300005615 Bacteria 2601
24 Ga0070702_100088563 3300005615 Bacteria 1872
25 Ga0068864_100628450 3300005618 Bacteria 1044
26 Ga0068860_100170300 3300005843 Bacteria 2103
27 Ga0068860_100254269 3300005843 Bacteria 1711
28 Ga0070715_10055840 3300006163 Bacteria 1716
29 Ga0070712_100000005 3300006175 Bacteria 177449
30 Ga0075362_10169954 3300006177 Bacteria 1053
31 Ga0075366_10057650 3300006195 Bacteria 2308
32 Ga0075428_100085540 3300006844 Bacteria 3439
33 Ga0075430_100057520 3300006846 Bacteria 3271
34 Ga0075431_100018547 3300006847 Bacteria 7088
35 Ga0075434_100625708 3300006871 Bacteria 1095
36 Ga0075429_100000732 3300006880 Bacteria 25759
37 Ga0075429_100008962 3300006880 Bacteria 8691
38 Ga0068865_100464272 3300006881 Bacteria 1049
39 Ga0099794_10103413 3300007265 Bacteria 1423
40 Ga0111539_10000092 3300009094 Bacteria 94116
41 Ga0111539_10240703 3300009094 Bacteria 2107
42 Ga0105245_10222509 3300009098 Bacteria 1822
43 Ga0114129_10136358 3300009147 Bacteria 3367
44 Ga0114129_10154567 3300009147 Bacteria 3138
45 Ga0114129_10234264 3300009147 Bacteria 2471
46 Ga0114129_10668520 3300009147 Bacteria 1339
47 Ga0105243_10064313 3300009148 Bacteria 2943
48 Ga0105237_10000602 3300009545 Bacteria 50128
49 Ga0105238_10083692 3300009551 Bacteria 3179
50 Ga0099796_10101847 3300010159 Bacteria 1081
51 Ga0105246_10425711 3300011119 Bacteria 1109
52 Ga0163163_10420944 3300014325 Bacteria 1395
53 Ga0163163_11041634 3300014325 Bacteria 881
54 Ga0163163_11191493 3300014325 Bacteria 824
55 Ga0157379_10301716 3300014968 Bacteria 1460
56 Ga0157376_10015105 3300014969 Bacteria 5820
57 Ga0157376_10098255 3300014969 Bacteria 2552
58 Ga0207699_10072443 3300025906 Bacteria 2110
59 Ga0207707_10197035 3300025912 Bacteria 1757
60 Ga0207693_10000001 3300025915 Bacteria 469535
61 Ga0207662_10029259 3300025918 Bacteria 3190
62 Ga0207646_10000234 3300025922 Bacteria 76450
63 Ga0207681_10001935 3300025923 Bacteria 13272
64 Ga0207694_10025037 3300025924 Bacteria 4535
65 Ga0207659_10043669 3300025926 Bacteria 3150
66 Ga0207687_10108814 3300025927 Bacteria 2053
67 Ga0207690_10387454 3300025932 Bacteria 1112
68 Ga0207709_10594029 3300025935 Unclassified 876
69 Ga0207670_10045124 3300025936 Bacteria 2920
70 Ga0207689_10022197 3300025942 Bacteria 5336
71 Ga0207639_10150392 3300026041 Bacteria 1949
72 Ga0207678_10034598 3300026067 Bacteria 4400
73 Ga0207641_10041825 3300026088 Bacteria 3842
74 Ga0207428_10006427 3300027907 Bacteria 10851
75 Ga0268265_10099788 3300028380 Bacteria 2342
76 Ga0268265_10233222 3300028380 Bacteria 1619
77 Ga0268264_10113405 3300028381 Bacteria 2378
78 Ga0268264_10506409 3300028381 Bacteria 1178
79 Ga0265337_1082989 3300028556 Bacteria 876
80 Ga0265336_10031367 3300028666 Bacteria 1651
81 Ga0307517_10060398 3300028786 Bacteria 3609
82 Ga0265338_10094754 3300028800 Bacteria 2455
83 Ga0265332_10003054 3300031238 Bacteria 8194
84 Ga0265327_10096425 3300031251 Bacteria 1434
85 Ga0307509_10000227 3300031507 Bacteria 90633
86 Ga0307408_100227707 3300031548 Bacteria 1525
87 Ga0265313_10003638 3300031595 Bacteria 12364
88 Ga0265313_10057257 3300031595 Bacteria 1840
89 Ga0307508_10161502 3300031616 Bacteria 1844
90 Ga0307508_10234490 3300031616 Bacteria 1433
91 Ga0316576_10045669 3300031727 Unclassified 3169
92 Ga0307516_10039458 3300031730 Bacteria 4706
93 Ga0307405_10480861 3300031731 Bacteria 991
94 Ga0307406_10035505 3300031901 Bacteria 3067
95 Ga0307412_10415069 3300031911 Bacteria 1100
96 Ga0307415_100070745 3300032126 Bacteria 2451
97 Ga0316212_1007351 3300033547 Bacteria 1591
98 Ga0373954_0325498 3300035118 Bacteria 759
99 Ga0373943_0256236 3300035170 Bacteria 984
100 Ga0316574_0075385 3300035398 Bacteria 2136
101 Ga0373947_0039889 3300035725 Bacteria 2796
102 Ga0373937_0090249 3300036401 Bacteria 2838
103 Ga0316584_0181077 3300036712 Bacteria 1560
104 Ga0373925_0066364 3300037068 Bacteria 2720
105 Ga0436365_0598766 3300039437 Bacteria 1103
106 Ga0436361_0496905 3300039447 Bacteria 2668
107 Ga0451802_0949647 3300041460 Bacteria 1262
108 Ga0451577_0244888 3300042876 Bacteria 1622
109 Ga0451577_0613777 3300042876 Bacteria 987
110 Ga0466972_0006878 3300044658 Bacteria 5708
111 Ga0466972_0162239 3300044658 Bacteria 1050
112 Ga0453683_0426748 3300044673 Bacteria 856
113 Ga0453684_0001479 3300044712 Bacteria 66322
114 Ga0453684_0104656 3300044712 Bacteria 3454
115 Ga0495653_0106716 3300046463 Bacteria 2019
116 Ga0495667_0136662 3300046559 Bacteria 1580
117 Ga0495657_0089704 3300046675 Bacteria 1974
118 Ga0495672_0206663 3300047320 Unclassified 978
119 Ga0495675_0283910 3300047444 Bacteria 986
120 Ga0495602_0197083 3300048088 Bacteria 1539
121 Ga0496112_0556521 3300048915 Bacteria 1081
122 Ga0496125_0047127 3300048928 Bacteria 3608
123 Ga0496126_0106362 3300048929 Bacteria 2449
124 Ga0496126_0118360 3300048929 Bacteria 2300
125 Ga0496126_0269160 3300048929 Bacteria 1414
126 Ga0501033_0279489 3300049570 Bacteria 1179
127 Ga0501036_0094159 3300049572 Bacteria 2531
128 Ga0501040_0005809 3300049576 Bacteria 7980
129 Ga0501042_0028633 3300049578 Bacteria 3927
130 Ga0501042_0433463 3300049578 Bacteria 953
131 Ga0501046_0012885 3300049580 Bacteria 7109
132 Ga0501048_0055857 3300049582 Bacteria 2802
133 Ga0501070_0460940 3300049586 Bacteria 1024
134 Ga0501071_0057702 3300049587 Bacteria 2806
135 Ga0501071_0082244 3300049587 Bacteria 2358
136 Ga0501072_0117715 3300049588 Bacteria 2116
137 Ga0501074_0028785 3300049590 Bacteria 4025
138 Ga0501075_0014316 3300049591 Bacteria 5683
139 Ga0501076_0027444 3300049592 Bacteria 4416
140 Ga0501076_0030049 3300049592 Bacteria 4231
141 Ga0501077_0066916 3300049593 Bacteria 2279
142 Ga0501077_0076825 3300049593 Bacteria 2115
143 Ga0501079_0055753 3300049741 Bacteria 3049
144 Ga0501080_0544559 3300049742 Bacteria 1034
145 Ga0501081_0019789 3300049743 Bacteria 4484
146 Ga0501081_0184909 3300049743 Unclassified 1508
147 Ga0501083_0103637 3300049744 Bacteria 1875
148 Ga0501045_0004134 3300049824 Bacteria 10024
149 nmdc:mga00v17_444931_c1 3300050491 Bacteria 841
150 nmdc:mga0yw44_313520_c1 3300050492 Bacteria 1052
151 nmdc:mga0k408_11193_c2 3300050493 Bacteria 4476
152 nmdc:mga0k408_99683_c1 3300050493 Bacteria 1712
153 nmdc:mga06z11_277497_c1 3300050494 Bacteria 992
154 nmdc:mga06z11_96106_c1 3300050494 Bacteria 1618
155 nmdc:mga05p37_299243_c1 3300050507 Bacteria 1912
156 nmdc:mga05p37_678813_c1 3300050507 Bacteria 1148
157 nmdc:mga09592_514863_c1 3300050508 Bacteria 1029
158 nmdc:mga09592_6823_c1 3300050508 Bacteria 9291
159 nmdc:mga0qj67_79176_c1 3300050509 Bacteria 2631
160 nmdc:mga06r32_27063_c1 3300050510 Bacteria 5353
161 nmdc:mga08y16_152440_c1 3300050511 Bacteria 2402
162 nmdc:mga08y16_19246_c1 3300050511 Bacteria 7196
163 nmdc:mga08y16_227408_c1 3300050511 Bacteria 1610
164 nmdc:mga0rr50_189151_c1 3300050513 Bacteria 1686
165 Ga0495612_0048877 3300053078 Bacteria 1734
166 Ga0495619_0042473 3300053085 Bacteria 2977
167 Ga0500646_0019819 3300053090 Bacteria 1782
168 Ga0500566_0008056 3300053094 Bacteria 6235
169 Ga0500554_000251 3300053102 Bacteria 11603
170 Ga0500572_000023 3300053111 Bacteria 47431
171 Ga0500595_000721 3300053119 Bacteria 19640
172 Ga0500597_101627 3300053120 Bacteria 1250
173 Ga0500614_000650 3300053123 Bacteria 8862
174 Ga0500559_0003166 3300053136 Bacteria 8179
175 Ga0500622_0105377 3300053156 Bacteria 1384
176 Ga0500596_007320 3300053735 Bacteria 1814
177 Ga0501084_0068894 3300054114 Bacteria 2961
178 Ga0501084_0077218 3300054114 Bacteria 2792
179 Ga0501082_0032561 3300060353 Bacteria 4496
180 Ga0501082_0135960 3300060353 Bacteria 2133
181 Ga0501082_0138780 3300060353 Bacteria 2110
182 Ga0530510_0199349 3300061734 Bacteria 1486
183 2512037912 2511231221 Bacteria 6846400
184 2523106532 2522572158 Bacteria 6514390
185 Ga0068864_100311596
186 LJNas_1001036
187 JGI25151J46595_10000124
188 rootL2_10195264
189 Ga0055542_1021332
190 Ga0068869_100099972
191 Ga0070682_100061612
192 Ga0070689_100007816
193 Ga0070689_100014013
194 Ga0070713_100075562
195 Ga0070710_10254487
196 Ga0070701_10069216
197 Ga0070705_100005555
198 Ga0070705_100400436
199 Ga0070694_100257538
200 Ga0070681_10231526
201 Ga0068867_100079185
202 Ga0070707_100000095
203 Ga0070699_100005766
204 Ga0070697_100006962
205 Ga0068853_100481755
206 Ga0070696_100068332
207 Ga0070702_100040726
208 Ga0070702_100088563
209 Ga0068864_100628450
210 Ga0068860_100170300
211 Ga0068860_100254269
212 Ga0070715_10055840
213 Ga0070712_100000005
214 Ga0075362_10169954
215 Ga0075366_10057650
216 Ga0075428_100085540
217 Ga0075430_100057520
218 Ga0075431_100018547
219 Ga0075434_100625708
220 Ga0075429_100000732
221 Ga0075429_100008962
222 Ga0068865_100464272
223 Ga0099794_10103413
224 Ga0111539_10000092
225 Ga0111539_10240703
226 Ga0105245_10222509
227 Ga0114129_10136358
228 Ga0114129_10154567
229 Ga0114129_10234264
230 Ga0114129_10668520
231 Ga0105243_10064313
232 Ga0105237_10000602
233 Ga0105238_10083692
234 Ga0099796_10101847
235 Ga0105246_10425711
236 Ga0163163_10420944
237 Ga0163163_11041634
238 Ga0163163_11191493
239 Ga0157379_10301716
240 Ga0157376_10015105
241 Ga0157376_10098255
242 Ga0207699_10072443
243 Ga0207707_10197035
244 Ga0207693_10000001
245 Ga0207662_10029259
246 Ga0207646_10000234
247 Ga0207681_10001935
248 Ga0207694_10025037
249 Ga0207659_10043669
250 Ga0207687_10108814
251 Ga0207690_10387454
252 Ga0207709_10594029
253 Ga0207670_10045124
254 Ga0207689_10022197
255 Ga0207639_10150392
256 Ga0207678_10034598
257 Ga0207641_10041825
258 Ga0207428_10006427
259 Ga0268265_10099788
260 Ga0268265_10233222
261 Ga0268264_10113405
262 Ga0268264_10506409
263 Ga0265337_1082989
264 Ga0265336_10031367
265 Ga0307517_10060398
266 Ga0265338_10094754
267 Ga0265332_10003054
268 Ga0265327_10096425
269 Ga0307509_10000227
270 Ga0307408_100227707
271 Ga0265313_10003638
272 Ga0265313_10057257
273 Ga0307508_10161502
274 Ga0307508_10234490
275 Ga0316576_10045669
276 Ga0307516_10039458
277 Ga0307405_10480861
278 Ga0307406_10035505
279 Ga0307412_10415069
280 Ga0307415_100070745
281 Ga0316212_1007351
282 Ga0373954_0325498
283 Ga0373943_0256236
284 Ga0316574_0075385
285 Ga0373947_0039889
286 Ga0373937_0090249
287 Ga0316584_0181077
288 Ga0373925_0066364
289 Ga0436365_0598766
290 Ga0436361_0496905
291 Ga0451802_0949647
292 Ga0451577_0244888
293 Ga0451577_0613777
294 Ga0466972_0006878
295 Ga0466972_0162239
296 Ga0453683_0426748
297 Ga0453684_0001479
298 Ga0453684_0104656
299 Ga0495653_0106716
300 Ga0495667_0136662
301 Ga0495657_0089704
302 Ga0495672_0206663
303 Ga0495675_0283910
304 Ga0495602_0197083
305 Ga0496112_0556521
306 Ga0496125_0047127
307 Ga0496126_0106362
308 Ga0496126_0118360
309 Ga0496126_0269160
310 Ga0501033_0279489
311 Ga0501036_0094159
312 Ga0501040_0005809
313 Ga0501042_0028633
314 Ga0501042_0433463
315 Ga0501046_0012885
316 Ga0501048_0055857
317 Ga0501070_0460940
318 Ga0501071_0057702
319 Ga0501071_0082244
320 Ga0501072_0117715
321 Ga0501074_0028785
322 Ga0501075_0014316
323 Ga0501076_0027444
324 Ga0501076_0030049
325 Ga0501077_0066916
326 Ga0501077_0076825
327 Ga0501079_0055753
328 Ga0501080_0544559
329 Ga0501081_0019789
330 Ga0501081_0184909
331 Ga0501083_0103637
332 Ga0501045_0004134
333 nmdc:mga00v17_444931_c1
334 nmdc:mga0yw44_313520_c1
335 nmdc:mga0k408_11193_c2
336 nmdc:mga0k408_99683_c1
337 nmdc:mga06z11_277497_c1
338 nmdc:mga06z11_96106_c1
339 nmdc:mga05p37_299243_c1
340 nmdc:mga05p37_678813_c1
341 nmdc:mga09592_514863_c1
342 nmdc:mga09592_6823_c1
343 nmdc:mga0qj67_79176_c1
344 nmdc:mga06r32_27063_c1
345 nmdc:mga08y16_152440_c1
346 nmdc:mga08y16_19246_c1
347 nmdc:mga08y16_227408_c1
348 nmdc:mga0rr50_189151_c1
349 Ga0495612_0048877
350 Ga0495619_0042473
351 Ga0500646_0019819
352 Ga0500566_0008056
353 Ga0500554_000251
354 Ga0500572_000023
355 Ga0500595_000721
356 Ga0500597_101627
357 Ga0500614_000650
358 Ga0500559_0003166
359 Ga0500622_0105377
360 Ga0500596_007320
361 Ga0501084_0068894
362 Ga0501084_0077218
363 Ga0501082_0032561
364 Ga0501082_0135960
365 Ga0501082_0138780
366 Ga0530510_0199349
367 2512037912
368 2523106532

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00590

TP_methylase

Tetrapyrrole (Corrin/Porphyrin) Methylases

2

208

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
1cbf-assembly1.cif.gz_A the x-ray structure of a cobalamin biosynthetic enzyme, cobalt precorrin-4 methyltransferase, cbif 0.9646 3 227
3nei-assembly1.cif.gz_B crystal structure of precorrin-4 c11-methyltransferase from rhodobacter capsulatus (no sah bound) 0.953 1 227
3ndc-assembly1.cif.gz_B crystal structure of precorrin-4 c11-methyltransferase from rhodobacter capsulatus 0.9517 1 234
3ndc-assembly1.cif.gz_A crystal structure of precorrin-4 c11-methyltransferase from rhodobacter capsulatus 0.95 1 227
3ndc-assembly1.cif.gz_B crystal structure of precorrin-4 c11-methyltransferase from rhodobacter capsulatus 0.9478 1 234
ID Description Score Start End Superfamily
3neiB01 Alpha Beta;3-Layer(aba) Sandwich;Cobalt-precorrin-4 Transmethylase; domain 1;Tetrapyrrole methylase, N-terminal domain 0.9953 1 107 3.40.1010.10
af_P9WGB1_111_234_3.30.950.10 Alpha Beta;2-Layer Sandwich;Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2;Tetrapyrrole methylase, C-terminal domain 0.9724 110 225 3.30.950.10
4e16A01 Alpha Beta;3-Layer(aba) Sandwich;Cobalt-precorrin-4 Transmethylase; domain 1;Tetrapyrrole methylase, N-terminal domain 0.9657 2 107 3.40.1010.10
2cbfA01 Alpha Beta;3-Layer(aba) Sandwich;Cobalt-precorrin-4 Transmethylase; domain 1;Tetrapyrrole methylase, N-terminal domain 0.9604 2 107 3.40.1010.10
3neiB01 Alpha Beta;3-Layer(aba) Sandwich;Cobalt-precorrin-4 Transmethylase; domain 1;Tetrapyrrole methylase, N-terminal domain 0.9596 1 107 3.40.1010.10
ID Description Score Start End GO Terms
AF-A0A527GMG2-F1-model_v4 Precorrin-4 C(11)-methyltransferase 0.9918 1 122 GO:0008168
GO:0032259
AF-X8BFD6-F1-model_v4 Tetrapyrrole (Corrin/Porphyrin) Methylases family protein 0.9854 1 108 GO:0008168
GO:0032259
AF-A0A530BU87-F1-model_v4 Precorrin-4 C(11)-methyltransferase 0.9853 1 77 GO:0008168
GO:0032259
AF-A0A529NH92-F1-model_v4 Precorrin-4 C(11)-methyltransferase 0.9845 83 209 GO:0008168
GO:0032259
AF-A0A257YY30-F1-model_v4 Precorrin-4 C(11)-methyltransferase 0.9828 1 180 GO:0009236
GO:0032259
GO:0046026

Map