3300000546 Metadata

Taxon Oid 3300000546
Ncbi Domain *Microbiome
Sequencing Status Complete
Study Name Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain
Genome Name Sample Name Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled
Sequencing Center Beijing Genomics Institute (BGI), Lifesequencing S.L.
Img Genome Id 3300000546
Ncbi Phylum Host-associated
Ncbi Class Plants
Ncbi Order Roots
Ncbi Family Rhizosphere
Ncbi Genus Soil
Ncbi Species Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain
Img Submission Id 11387
Gold Analysis Project Id Ga0011512
Gold Analysis Project Type Metagenome Analysis
Gold Sequencing Project Id Gp0054948
Gold Study Id Gs0046224
Add Date 12/06/2012 00:00:00
Assembly Method Flash v. 1.0.3; SOAPdenovo
Comments released per JGI data release policy
Has Coverage False
Public Release Date 11/01/2019 00:00:00
Submission Type Primary
In File Yes
Submitter Name Fernandez Antonio
Rnd Project True
Alt2 Contact Emails [email protected]
Alt2 Contact Names Fernandez-Lopez, Manuel
Contact Email [email protected]
Contact Name Fernandez-Lopez, Manuel
Is Published False
Sequencing Method Illumina HiSeq 2000
Sequencing Strategy Metagenome
Ecosystem Host-associated
Ecosystem Category Plants
Ecosystem Subtype Rhizosphere
Ecosystem Type Roots
Specific Ecosystem Soil
Cultured False
Elevation In Meters 1794.000000
Geographic Location Sierra Nevada National Park, Granada, Spain
Habitat Quercus rhizosphere
Isolation Quercus rhizosphere
Isolation Country 8840
Latitude 36.9697
Longitude -3.46027
Sample Collection Date 2008/4/29
Host Name Quercus ilex
Genome Size Assembled 113208407
Gene Count Assembled 331155