F276089

General Info

Members Datasets Scaffolds Average Seq Length
180 162 360 919

Family's Representative Sequence

Representative Sequence 3300045976|Ga0466967_0004701|Ga0466967_0004701_4318_7191
Length 957
Sequence MNAVEIEQAVSELAAAPFDTAEFPFAFLAAFGNKETIIRRLRSANSSDVPGGVLQRSNLHIAVSPEGRIGETLAALRASPKTATNKVKFILATDGVTLEAEDLISNEPPLVCNYEQLPDHFGYFLPLAGITTVKQVRDNAFDIRATARLNKLYIELLKNNPEWGTAARRHDMNHFMARLIFCFFAESTDIFNGTGLFTATVEQMSARDASNMHEVIGEIFRAMNTKIADRESAKISRWAEVFPYVNGGLFSGGHSPSEDGRSSERPLDVPRFSKIARSYLVHIGNLDWKKINPDIFGSMIQAVAEDEERGALGMHYTSVPNILKVLNPLFLDDLRAKLEEAGDNPRMLLNLRRRMAKIRVFDPACGSGNFLVIAYKEMRAIEAEINKRRGEPDRRSEIPLTNFRGIELRDFPCEIARLALIIAEFQCDVLYRGQKEALAEFLPLDAENWITCGNALRLDWLSICPPTGTGVKYRADDLFNSPLDQAQIDFENEGGETYICGNPPYLGSKWQSDEHKADLRTIFESRTKAWKSLDYVAGWFMKAAEYGIATKGASALVSTNSICQGQQVPILWPLIFKTGHQIAFAHTSFKWANLAAHNAGVTVVIVGIATNTGKSRRLFAIEEQGIAIERHVSNINPYLVPAENVFIEPTSRSANPQLAQMQFGNHPYYGAALIFSEAEKEAIILRAPEASRFIRPLYGSKEFISSAPRACLWIKDEHAKEAAAIAPIAEKLEAVTQARKDAKQDKAAQKLAEMPHRFRDQVTADAHVIVVPRVSSETREFLPAGILTGEAIIQDQAFALYDAPLWNMALIASRLHLVWIATVCGKLKTDFRYSNTLGWNTFPVPPLTDKNKADLTRCAEDILLAREAHFPATIAELYDPDEMPANLREAHERNDETLERIYIGRRFKNDTERLEKLFERYTKMTAGEGRTKSAPGTKAKRKRRTSAVPSLVPADGD

Samples

Sample ID Description Type Environment
1 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300002076 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3 Metagenome Rhizosphere
5 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
9 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
10 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
11 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
12 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
13 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
23 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
26 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
27 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
30 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
31 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
32 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
33 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
34 3300022739 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - brown nodules Metagenome Nodule
35 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
36 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
37 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
38 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
39 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
40 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
52 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
53 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
55 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
56 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
57 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
58 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
59 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
60 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
61 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
62 3300031967 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules Metagenome Nodule
63 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
64 3300033430 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - small nodules Metagenome Nodule
65 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
66 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
67 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
68 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
69 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
70 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
71 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
72 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
73 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
74 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
75 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
76 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
77 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
78 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
79 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
80 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
81 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
82 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
83 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
84 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
85 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
86 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
87 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
88 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
89 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
90 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
91 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
92 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
93 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
94 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
95 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
96 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
97 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
98 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
99 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
100 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
101 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
102 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
103 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
104 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
108 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
109 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
110 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
111 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
112 2510461076 Rhizobium leguminosarum bv. trifolii TA1 Isolate Nodule
113 2513237137 Bradyrhizobium elkanii USDA 94 Isolate Nodule
114 2515154116 Rhizobium ruizarguesonis Ps8 Isolate Nodule
115 2599185190 Pseudomonas sp. NFPP04 Isolate Rhizoplane
116 2599185290 Pseudomonas sp. NFPP11 Isolate Rhizoplane
117 2643221545 Caulobacter sp. Root1455 Isolate Unclassified
118 2643221599 Rhizobium sp. Root708 Isolate Unclassified
119 2643221674 Devosia sp. Root436 Isolate Unclassified
120 2643221688 Rhizobium sp. Root482 Isolate Unclassified
121 2718218233 Rhizobium phaseoli sv. phaseoli R744 Isolate Nodule
122 2718218235 Rhizobium phaseoli sv. phaseoli R620 Isolate Nodule
123 2718218269 Rhizobium phaseoli sv. phaseoli N671 Isolate Nodule
124 2721755685 Rhizobium phaseoli sv. phaseoli R611 Isolate Nodule
125 2721755819 Rhizobium phaseoli sv. phaseoli N771 Isolate Nodule
126 2721755822 Rhizobium phaseoli sv. phaseoli R650 Isolate Nodule
127 2757320392 Phyllobacterium leguminum ORS 1419 Isolate Nodule
128 2791355262 Rhizobium sp. M1 Isolate Nodule
129 2808606361 Pseudomonas sp. SJZ075 Isolate Rhizosphere
130 2808606376 Pseudomonas sp. SJZ074 Isolate Rhizosphere
131 2808606378 Pseudomonas sp. SJZ078 Isolate Rhizosphere
132 2808606380 Pseudomonas sp. SJZ085 Isolate Rhizosphere
133 2808606383 Pseudomonas sp. SJZ124 Isolate Rhizosphere
134 2808606389 Pseudomonas sp. SJZ101 Isolate Rhizosphere
135 2814123068 Kosakonia radicincitans GXGL-4A Isolate Rhizosphere
136 2816332253 Burkholderia vietnamiensis HI2297 Isolate Unclassified
137 2824653114 Bradyrhizobium sp. HAMBI 2142 Isolate Unclassified
138 2842285085 Rhizobium lentis SEMIA 490 Isolate Nodule
139 2842363717 Rhizobium leguminosarum SEMIA 4016 Isolate Nodule
140 2842402390 Rhizobium lentis SEMIA 4033 Isolate Nodule
141 2842409023 Rhizobium lentis SEMIA 4034 Isolate Nodule
142 2842415677 Rhizobium lentis SEMIA 4036 Isolate Nodule
143 2844009547 Mesorhizobium sp. M7A.F.Ce.TU.012.03.2.1 Isolate Nodule
144 2847670302 Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 Isolate Nodule
145 2854916844 Neorhizobium huautlense DSM 21817 Isolate Unclassified
146 2857442823 Stenotrophomonas sp. R-74235 Isolate Unclassified
147 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
148 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
149 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
150 2936375103 Rhizobium changzhiense WYCCWR 11317 Isolate Nodule
151 2958064165 Mesorhizobium sp. SARCC-RB16n Isolate Unclassified
152 2961127735 Mesorhizobium sp. M4A.F.Ca.ET.029.04.2.1 Isolate Nodule
153 2967671571 Sinorhizobium meliloti USDA1496 Isolate Nodule
154 2967693043 Sinorhizobium meliloti USDA1183 Isolate Nodule
155 2970047711 Sinorhizobium meliloti USDA1793 Isolate Nodule
156 2970129317 Sinorhizobium meliloti USDA1008 Isolate Nodule
157 2990196909 Pseudomonas mangrovi TC-11 Isolate Unclassified
158 8002745576 Marinomonas spartinae USM8 Isolate Rhizosphere
159 8005688590 Rhizobium bangladeshense 1024 Isolate Nodule
160 8019538911 Bradyrhizobium sp. LB9.1b Isolate Nodule
161 8054503363 Pseudomonas sivasensis BsEB-1 Isolate Unclassified
162 8056382006 Rhizobium croatiense 13T Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 71.67
Metatranscriptomes 0
Isolates 28.33

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.22
Nodule 18.89
Rhizoplane 1.67
Rhizosphere 55.56
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466967_0004701 3300045976 Bacteria 9279
2 JGI24739J22299_10001008 3300001989 Bacteria 10445
3 JGI24735J21928_10000727 3300002067 Bacteria 11692
4 JGI24749J21850_1000075 3300002076 Bacteria 17989
5 JGI25165J46597_1000106 3300003214 Bacteria 151139
6 rootH2_10043584 3300003320 Bacteria 7049
7 rootH1_10020010 3300003323 Bacteria 34376
8 Ga0055528_1001405 3300003790 Bacteria 14751
9 Ga0055531_10002704 3300003794 Bacteria 11674
10 Ga0065165_1001980 3300005262 Bacteria 19323
11 Ga0065704_10073298 3300005289 Bacteria 7331
12 Ga0070658_10000475 3300005327 Bacteria 34795
13 Ga0070669_100000020 3300005353 Bacteria 181297
14 Ga0070679_100014358 3300005530 Bacteria 7608
15 Ga0070665_100024179 3300005548 Bacteria 6118
16 Ga0070665_100072946 3300005548 Bacteria 3440
17 Ga0068855_100007944 3300005563 Bacteria 12821
18 Ga0068855_100043380 3300005563 Bacteria 5328
19 Ga0068859_100003071 3300005617 Bacteria 16928
20 Ga0068863_100001731 3300005841 Bacteria 21592
21 Ga0075430_100015557 3300006846 Bacteria 6476
22 Ga0075431_100053034 3300006847 Bacteria 4181
23 Ga0097620_100003071 3300006931 Bacteria 16928
24 Ga0079104_1001951 3300006946 Bacteria 12231
25 Ga0105240_10008076 3300009093 Bacteria 15123
26 Ga0105240_10026998 3300009093 Bacteria 7526
27 Ga0111539_10064886 3300009094 Bacteria 4318
28 Ga0105243_10001298 3300009148 Bacteria 22341
29 Ga0105248_10000192 3300009177 Bacteria 70644
30 Ga0105248_10064902 3300009177 Bacteria 4099
31 Ga0105237_10048945 3300009545 Bacteria 4249
32 Ga0105239_10005026 3300010375 Bacteria 15615
33 Ga0105246_10000003 3300011119 Bacteria 96599
34 Ga0157373_10003796 3300013100 Bacteria 11423
35 Ga0157370_10002670 3300013104 Bacteria 21373
36 Ga0183363_1002 3300015690 Bacteria 425040
37 Ga0213872_10000483 3300021361 Bacteria 32024
38 Ga0228711_1001069 3300022739 Bacteria 38641
39 Ga0228710_1001146 3300022740 Bacteria 38624
40 Ga0207427_102231 3300025231 Bacteria 5466
41 Ga0209233_1000003 3300025261 Bacteria 1607366
42 Ga0209673_1000169 3300025273 Bacteria 134216
43 Ga0209564_1002423 3300025295 Bacteria 14799
44 Ga0209256_1001327 3300025299 Bacteria 26411
45 Ga0209257_1000430 3300025304 Bacteria 80826
46 Ga0207705_10000023 3300025909 Bacteria 301755
47 Ga0207707_10014093 3300025912 Bacteria 6968
48 Ga0207695_10021031 3300025913 Bacteria 7453
49 Ga0207695_10065882 3300025913 Bacteria 3722
50 Ga0207671_10004712 3300025914 Bacteria 12889
51 Ga0207681_10000005 3300025923 Bacteria 555724
52 Ga0207690_10001781 3300025932 Bacteria 13230
53 Ga0207709_10000681 3300025935 Bacteria 27442
54 Ga0207711_10000075 3300025941 Bacteria 106870
55 Ga0207667_10007758 3300025949 Bacteria 12829
56 Ga0207667_10035931 3300025949 Bacteria 5314
57 Ga0209281_1001326 3300027111 Bacteria 15582
58 Ga0209282_1000160 3300027666 Bacteria 38641
59 Ga0268266_10021178 3300028379 Bacteria 5539
60 Ga0265338_10006965 3300028800 Bacteria 14208
61 Ga0265324_10000397 3300029957 Bacteria 31569
62 Ga0265328_10004981 3300031239 Bacteria 5724
63 Ga0265331_10001489 3300031250 Bacteria 17294
64 Ga0265327_10000161 3300031251 Bacteria 144768
65 Ga0265327_10002647 3300031251 Bacteria 18430
66 Ga0307408_100006670 3300031548 Bacteria 7654
67 Ga0265313_10000319 3300031595 Bacteria 52344
68 Ga0307508_10000047 3300031616 Bacteria 137805
69 Ga0315914_1001133 3300031967 Bacteria 38640
70 Ga0307414_10001621 3300032004 Bacteria 11709
71 Ga0315913_1002801 3300033430 Bacteria 20700
72 Ga0395899_0000660 3300037312 Bacteria 35167
73 Ga0395900_0000010 3300037418 Bacteria 461364
74 Ga0395898_0001960 3300037466 Bacteria 25950
75 Ga0395898_0002324 3300037466 Bacteria 22718
76 Ga0395905_0000400 3300037471 Bacteria 61487
77 Ga0395901_0000007 3300038443 Bacteria 497408
78 Ga0395901_0023160 3300038443 Bacteria 6367
79 Ga0237819_02212 3300038705 Bacteria 4100
80 Ga0436361_0441322 3300039447 Bacteria 32824
81 Ga0439438_002295 3300041405 Bacteria 8198
82 Ga0439447_000178 3300041407 Bacteria 22339
83 Ga0439466_0000567 3300041411 Bacteria 13900
84 Ga0451833_0358788 3300041491 Bacteria 8492
85 Ga0466972_0002879 3300044658 Bacteria 8514
86 Ga0453684_0000296 3300044712 Bacteria 211075
87 Ga0495627_002090 3300046453 Bacteria 10153
88 Ga0495591_000423 3300046458 Bacteria 35158
89 Ga0495591_010679 3300046458 Bacteria 3539
90 Ga0495580_0036497 3300046472 Bacteria 3528
91 Ga0495585_0002647 3300046492 Bacteria 12580
92 Ga0495596_0001143 3300046500 Bacteria 15607
93 Ga0495620_0000007 3300046515 Bacteria 191058
94 Ga0495632_0000006 3300046519 Bacteria 345883
95 Ga0495632_0003062 3300046519 Bacteria 12163
96 Ga0495637_0000917 3300046520 Bacteria 18895
97 Ga0495648_0000620 3300046524 Bacteria 38000
98 Ga0495648_0003169 3300046524 Bacteria 14644
99 Ga0495667_0035742 3300046559 Bacteria 3319
100 Ga0495669_0000073 3300046684 Bacteria 66387
101 Ga0495649_0006592 3300046694 Bacteria 7218
102 Ga0495687_000049 3300047443 Bacteria 205432
103 Ga0495681_0001254 3300047470 Bacteria 19270
104 Ga0495626_0001442 3300048091 Bacteria 18895
105 Ga0496113_0009036 3300048916 Bacteria 6526
106 Ga0496116_0001860 3300048919 Bacteria 22844
107 Ga0496116_0004846 3300048919 Bacteria 12691
108 Ga0496118_0005457 3300048921 Bacteria 14456
109 Ga0496119_0001114 3300048922 Bacteria 33854
110 Ga0496121_0001994 3300048924 Bacteria 32423
111 Ga0496121_0013650 3300048924 Bacteria 8709
112 Ga0496122_0005232 3300048925 Bacteria 15572
113 Ga0496122_0008703 3300048925 Bacteria 10868
114 Ga0496123_0005814 3300048926 Bacteria 12237
115 Ga0496123_0032249 3300048926 Bacteria 3797
116 Ga0496124_0021352 3300048927 Bacteria 5967
117 Ga0496125_0000228 3300048928 Bacteria 114539
118 Ga0496125_0006836 3300048928 Bacteria 12237
119 Ga0495678_000056 3300049459 Bacteria 149598
120 Ga0495682_0000100 3300049460 Bacteria 76271
121 Ga0501032_0000045 3300049569 Bacteria 110632
122 Ga0501039_0000041 3300049575 Bacteria 113488
123 Ga0501046_0019030 3300049580 Bacteria 5700
124 Ga0501044_0000453 3300049823 Bacteria 49990
125 Ga0501044_0015059 3300049823 Bacteria 8334
126 nmdc:mga08y16_39343_c1 3300050511 Bacteria 4962
127 Ga0500655_000022 3300053133 Bacteria 43706
128 Ga0500577_0001445 3300053142 Bacteria 6084
129 Ga0500616_0021864 3300053153 Bacteria 3578
130 2510898076 2510461076 Bacteria 8618824
131 2513858627 2513237137 Bacteria 9558895
132 2515660691 2515154116 Bacteria 7552979
133 2599515167 2599185190 Bacteria 6285678
134 2599894547 2599185290 Bacteria 6289611
135 2643749081 2643221545 Bacteria 5083237
136 2644007375 2643221599 Bacteria 6292121
137 2644413769 2643221674 Bacteria 3919126
138 2644492228 2643221688 Bacteria 5260751
139 2720618844 2718218233 Bacteria 6662049
140 2720630253 2718218235 Bacteria 6630699
141 2720773948 2718218269 Bacteria 6906114
142 2723565833 2721755685 Bacteria 6704835
143 2724088555 2721755819 Bacteria 6906405
144 2724103098 2721755822 Bacteria 6726041
145 2757571993 2757320392 Bacteria 3737298
146 2793333554 2791355262 Bacteria 6774204
147 2808857343 2808606361 Bacteria 6136259
148 2808927011 2808606376 Bacteria 6248667
149 2808937353 2808606378 Bacteria 6177535
150 2808949130 2808606380 Bacteria 6248705
151 2808965683 2808606383 Bacteria 6138645
152 2809000718 2808606389 Bacteria 6138126
153 2814695053 2814123068 Bacteria 5687681
154 2817260653 2816332253 Bacteria 6764532
155 2824659584 2824653114 Bacteria 8493680
156 2842289363 2842285085 Bacteria 6011953
157 2842368637 2842363717 Bacteria 6844742
158 2842406711 2842402390 Bacteria 6681310
159 2842413793 2842409023 Bacteria 6687331
160 2842420245 2842415677 Bacteria 6596907
161 2844010633 2844009547 Bacteria 6728125
162 2847673663 2847670302 Bacteria 6165597
163 2854922251 2854916844 Bacteria 5725939
164 2857443061 2857442823 Bacteria 4562550
165 2865006129 2865002811 Bacteria 6333767
166 2883358071 2883354860 Bacteria 5865246
167 2895523494 2895522137 Bacteria 3284416
168 2936377727 2936375103 Bacteria 6652732
169 2958068426 2958064165 Bacteria 7158582
170 2961134059 2961127735 Bacteria 7196641
171 2967675423 2967671571 Bacteria 7021409
172 2967699253 2967693043 Bacteria 6804451
173 2970053329 2970047711 Bacteria 7088379
174 2970135469 2970129317 Bacteria 6806560
175 2990200159 2990196909 Bacteria 4054280
176 8002746660 8002745576 Bacteria 4840272
177 8005690562 8005688590 Bacteria 6610080
178 8019541966 8019538911 Bacteria 7872763
179 8054508370 8054503363 Bacteria 6101651
180 8056386235 8056382006 Bacteria 6408074
181 Ga0466967_0004701
182 JGI24739J22299_10001008
183 JGI24735J21928_10000727
184 JGI24749J21850_1000075
185 JGI25165J46597_1000106
186 rootH2_10043584
187 rootH1_10020010
188 Ga0055528_1001405
189 Ga0055531_10002704
190 Ga0065165_1001980
191 Ga0065704_10073298
192 Ga0070658_10000475
193 Ga0070669_100000020
194 Ga0070679_100014358
195 Ga0070665_100024179
196 Ga0070665_100072946
197 Ga0068855_100007944
198 Ga0068855_100043380
199 Ga0068859_100003071
200 Ga0068863_100001731
201 Ga0075430_100015557
202 Ga0075431_100053034
203 Ga0097620_100003071
204 Ga0079104_1001951
205 Ga0105240_10008076
206 Ga0105240_10026998
207 Ga0111539_10064886
208 Ga0105243_10001298
209 Ga0105248_10000192
210 Ga0105248_10064902
211 Ga0105237_10048945
212 Ga0105239_10005026
213 Ga0105246_10000003
214 Ga0157373_10003796
215 Ga0157370_10002670
216 Ga0183363_1002
217 Ga0213872_10000483
218 Ga0228711_1001069
219 Ga0228710_1001146
220 Ga0207427_102231
221 Ga0209233_1000003
222 Ga0209673_1000169
223 Ga0209564_1002423
224 Ga0209256_1001327
225 Ga0209257_1000430
226 Ga0207705_10000023
227 Ga0207707_10014093
228 Ga0207695_10021031
229 Ga0207695_10065882
230 Ga0207671_10004712
231 Ga0207681_10000005
232 Ga0207690_10001781
233 Ga0207709_10000681
234 Ga0207711_10000075
235 Ga0207667_10007758
236 Ga0207667_10035931
237 Ga0209281_1001326
238 Ga0209282_1000160
239 Ga0268266_10021178
240 Ga0265338_10006965
241 Ga0265324_10000397
242 Ga0265328_10004981
243 Ga0265331_10001489
244 Ga0265327_10000161
245 Ga0265327_10002647
246 Ga0307408_100006670
247 Ga0265313_10000319
248 Ga0307508_10000047
249 Ga0315914_1001133
250 Ga0307414_10001621
251 Ga0315913_1002801
252 Ga0395899_0000660
253 Ga0395900_0000010
254 Ga0395898_0001960
255 Ga0395898_0002324
256 Ga0395905_0000400
257 Ga0395901_0000007
258 Ga0395901_0023160
259 Ga0237819_02212
260 Ga0436361_0441322
261 Ga0439438_002295
262 Ga0439447_000178
263 Ga0439466_0000567
264 Ga0451833_0358788
265 Ga0466972_0002879
266 Ga0453684_0000296
267 Ga0495627_002090
268 Ga0495591_000423
269 Ga0495591_010679
270 Ga0495580_0036497
271 Ga0495585_0002647
272 Ga0495596_0001143
273 Ga0495620_0000007
274 Ga0495632_0000006
275 Ga0495632_0003062
276 Ga0495637_0000917
277 Ga0495648_0000620
278 Ga0495648_0003169
279 Ga0495667_0035742
280 Ga0495669_0000073
281 Ga0495649_0006592
282 Ga0495687_000049
283 Ga0495681_0001254
284 Ga0495626_0001442
285 Ga0496113_0009036
286 Ga0496116_0001860
287 Ga0496116_0004846
288 Ga0496118_0005457
289 Ga0496119_0001114
290 Ga0496121_0001994
291 Ga0496121_0013650
292 Ga0496122_0005232
293 Ga0496122_0008703
294 Ga0496123_0005814
295 Ga0496123_0032249
296 Ga0496124_0021352
297 Ga0496125_0000228
298 Ga0496125_0006836
299 Ga0495678_000056
300 Ga0495682_0000100
301 Ga0501032_0000045
302 Ga0501039_0000041
303 Ga0501046_0019030
304 Ga0501044_0000453
305 Ga0501044_0015059
306 nmdc:mga08y16_39343_c1
307 Ga0500655_000022
308 Ga0500577_0001445
309 Ga0500616_0021864
310 2510898076
311 2513858627
312 2515660691
313 2599515167
314 2599894547
315 2643749081
316 2644007375
317 2644413769
318 2644492228
319 2720618844
320 2720630253
321 2720773948
322 2723565833
323 2724088555
324 2724103098
325 2757571993
326 2793333554
327 2808857343
328 2808927011
329 2808937353
330 2808949130
331 2808965683
332 2809000718
333 2814695053
334 2817260653
335 2824659584
336 2842289363
337 2842368637
338 2842406711
339 2842413793
340 2842420245
341 2844010633
342 2847673663
343 2854922251
344 2857443061
345 2865006129
346 2883358071
347 2895523494
348 2936377727
349 2958068426
350 2961134059
351 2967675423
352 2967699253
353 2970053329
354 2970135469
355 2990200159
356 8002746660
357 8005690562
358 8019541966
359 8054508370
360 8056386235

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF20467

MmeI_C

MmeI, C-terminal domain

847

927

0.97

PF20473

MmeI_Mtase

MmeI, DNA-methyltransferase domain

338

620

0.97

PF20466

MmeI_TRD

MmeI, target recognition domain

641

847

0.96

PF20465

MmeI_hel

MmeI, helicase spacer domain

170

250

0.91

PF20464

MmeI_N

MmeI, N-terminal domain

1

159

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
5hr4-assembly1.cif.gz_C structure of type iil restriction-modification enzyme mmei in complex with dna has implications for engineering of new specificities 0.8451 146 912
5hr4-assembly1.cif.gz_C structure of type iil restriction-modification enzyme mmei in complex with dna has implications for engineering of new specificities 0.835 146 912
7rfk-assembly3.cif.gz_C cama adenine methyltransferase complexed to cognate substrate dna and inhibitor sinefungin 0.6383 282 885
7rfk-assembly3.cif.gz_C cama adenine methyltransferase complexed to cognate substrate dna and inhibitor sinefungin 0.6307 282 885
1wdj-assembly1.cif.gz_B crystal structure of tt1808 from thermus thermophilus hb8 0.6279 60 113
ID Description Score Start End Superfamily
af_P96868_43_234_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.6355 333 597 3.40.50.150
1wdjB00 Alpha Beta;Alpha-Beta Complex;tt1808, chain A;tt1808, chain A 0.6279 60 113 3.90.1570.10
af_P96868_43_234_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.6048 333 597 3.40.50.150
af_Q60301_495_878_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.5979 332 615 3.40.50.150
3k0bA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.586 344 550 3.40.50.150
ID Description Score Start End GO Terms
AF-T1BDY3-F1-model_v4 DNA methylase 1.003 22 104 GO:0008168
GO:0032259
AF-A0A519PCC7-F1-model_v4 deleted 0.9934 788 916
AF-A0A2T5ZYC5-F1-model_v4 Uncharacterized protein 0.9915 788 918
AF-W6M5I9-F1-model_v4 MmeI-like C-terminal domain-containing protein 0.9911 819 913
AF-F3CC29-F1-model_v4 Type II restriction enzyme, methylase subunit 0.9881 794 919 GO:0008168
GO:0032259

Map