F246968

General Info

Members Datasets Scaffolds Average Seq Length
165 142 330 334

Family's Representative Sequence

Representative Sequence 3300047443|Ga0495687_062601|Ga0495687_062601_299_1420
Length 373
Sequence MELYAGIDLHSNNSVVTVLDEQDRTVYAKRLRNDLDAIVAALRACAGTMRGVAVESTYNWYWLVDGLQAAGFTVHLVNTAAVKQYDGLKHSGDFSDARHLAHLLRLGILPVGYIYPREERAVRDLLRKRSQLVRQRTTQILSIENLMARNLGTRATGNEIKRWEARNINAMELLDEQKQALKATLAVMKCIDGQVDRLERSILAKVKLREDYKGLKTVSGIGEILAVTIALETGDIGRFAGPGNFASYARMVDSRRESNGKKKGEGNAKCGNKYLAWAFIEAAHFAVRFDATIKRWYQKKCACSLSVARLLPRHQGRHAIRCSQGLRLKRIGAKTINGDGAGSVAGWLAEPRKLIARRRRSPAHVTEFVAPAP

Samples

Sample ID Description Type Environment
1 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
2 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
3 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
6 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
9 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
10 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
11 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
12 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
13 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
14 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
15 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
19 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
22 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
23 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
24 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
25 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
26 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
27 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
28 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
29 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
31 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
32 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
35 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
44 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
50 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
51 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
52 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
53 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
55 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
56 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
58 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
59 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
61 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
62 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
78 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
79 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
80 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
81 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
82 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
83 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
84 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
85 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
86 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
87 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
88 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
89 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
90 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
91 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
92 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
93 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
94 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
95 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
96 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
97 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
98 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
99 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
100 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
101 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
102 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
103 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
104 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
105 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
106 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
107 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
108 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
109 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
110 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
111 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
112 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
113 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
114 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
115 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
116 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
117 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
118 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
119 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
120 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
121 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
122 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
123 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
124 3300048986 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1E Metagenome Unclassified
125 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
128 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
129 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
130 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
131 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
132 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
133 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
134 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
135 3300053115 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 endosphere Metagenome Endosphere
136 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
137 3300053141 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 endosphere Metagenome Endosphere
138 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
139 3300053723 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 endosphere Metagenome Endosphere
140 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
141 2643221577 Rhodanobacter sp. Root627 Isolate Unclassified
142 2929520902 Variovorax beijingensis 502 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.18
Metatranscriptomes 0.61
Isolates 1.21

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.15
Nodule 0
Rhizoplane 0
Rhizosphere 67.27
Stem 0
Stem Tuber 0
Unclassified 12.73

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495687_062601 3300047443 Bacteria 1526
2 JGI25156J39149_1008068 3300002705 Bacteria 2692
3 JGI25162J39368_1004747 3300002737 Bacteria 2989
4 JGI25154J39366_1005639 3300002738 Bacteria 1960
5 JGI25164J39214_1004220 3300002772 Bacteria 1680
6 JGI25165J46597_1008094 3300003214 Bacteria 1680
7 rootH1_10035907 3300003323 Bacteria 1931
8 rootH1_10317307 3300003323 Bacteria 1543
9 Ga0055527_1005963 3300003760 Bacteria 1548
10 Ga0055535_1000627 3300003761 Bacteria 28395
11 Ga0055542_1000630 3300003762 Bacteria 29611
12 Ga0055529_1000594 3300003763 Bacteria 28386
13 Ga0070682_100102121 3300005337 Bacteria 1895
14 Ga0068868_100177843 3300005338 Bacteria 1764
15 Ga0070689_100147553 3300005340 Bacteria 1895
16 Ga0070669_100171461 3300005353 Bacteria 1692
17 Ga0070659_100039733 3300005366 Bacteria 3674
18 Ga0070667_100306938 3300005367 Bacteria 1430
19 Ga0070709_10173868 3300005434 Bacteria 1507
20 Ga0070694_100081004 3300005444 Unclassified 2257
21 Ga0070678_100097253 3300005456 Bacteria 2273
22 Ga0068867_100165273 3300005459 Bacteria 1748
23 Ga0070697_100098741 3300005536 Bacteria 2423
24 Ga0068859_100061899 3300005617 Unclassified 3772
25 Ga0068866_10087425 3300005718 Bacteria 1689
26 Ga0068861_100117118 3300005719 Unclassified 2143
27 Ga0068858_100399631 3300005842 Unclassified 1320
28 Ga0081538_10089450 3300005981 Bacteria 1598
29 Ga0075366_10002436 3300006195 Bacteria 9534
30 Ga0075366_10078735 3300006195 Bacteria 1967
31 Ga0097621_100141391 3300006237 Bacteria 2057
32 Ga0068871_100176323 3300006358 Bacteria 1835
33 Ga0075428_100130193 3300006844 Unclassified 2737
34 Ga0068865_100176900 3300006881 Bacteria 1640
35 Ga0097620_100061901 3300006931 Unclassified 3772
36 Ga0075435_100140292 3300007076 Bacteria 2027
37 Ga0099795_10065381 3300007788 Bacteria 1360
38 Ga0105240_10269731 3300009093 Bacteria 1960
39 Ga0114129_10380728 3300009147 Bacteria 1864
40 Ga0105243_10225355 3300009148 Bacteria 1660
41 Ga0105242_10215479 3300009176 Bacteria 1713
42 Ga0105248_10246636 3300009177 Bacteria 2010
43 Ga0105238_10054777 3300009551 Bacteria 4005
44 Ga0105249_10098809 3300009553 Bacteria 2742
45 Ga0105249_10100501 3300009553 Bacteria 2719
46 Ga0105246_10297288 3300011119 Unclassified 1302
47 Ga0157373_10052208 3300013100 Bacteria 2910
48 Ga0157370_10305441 3300013104 Bacteria 1468
49 Ga0157370_10312024 3300013104 Bacteria 1451
50 Ga0163162_10235025 3300013306 Bacteria 1963
51 Ga0163162_10278951 3300013306 Unclassified 1803
52 Ga0163162_10312957 3300013306 Bacteria 1703
53 Ga0157372_10160983 3300013307 Bacteria 2594
54 Ga0157375_10268376 3300013308 Bacteria 1868
55 Ga0182008_10000343 3300014497 Bacteria 36275
56 Ga0157376_10197888 3300014969 Bacteria 1847
57 Ga0182007_10000070 3300015262 Bacteria 82063
58 Ga0182007_10033698 3300015262 Bacteria 1734
59 Ga0213872_10019271 3300021361 Bacteria 3143
60 Ga0209672_108287 3300025228 Bacteria 1548
61 Ga0207427_105789 3300025231 Bacteria 1680
62 Ga0209437_108171 3300025233 Bacteria 1680
63 Ga0209258_107853 3300025242 Bacteria 1548
64 Ga0209646_1002562 3300025246 Unclassified 3953
65 Ga0209026_1011480 3300025250 Bacteria 1593
66 Ga0209148_1012515 3300025254 Bacteria 1548
67 Ga0209759_1002761 3300025256 Bacteria 7442
68 Ga0209759_1010309 3300025256 Bacteria 2746
69 Ga0209233_1021324 3300025261 Bacteria 1680
70 Ga0209455_1016918 3300025272 Bacteria 1548
71 Ga0207642_10086101 3300025899 Bacteria 1539
72 Ga0207695_10167377 3300025913 Bacteria 2125
73 Ga0207657_10105011 3300025919 Bacteria 2339
74 Ga0207681_10207993 3300025923 Bacteria 1506
75 Ga0207694_10052686 3300025924 Bacteria 3154
76 Ga0207670_10033807 3300025936 Bacteria 3298
77 Ga0207704_10112827 3300025938 Bacteria 1842
78 Ga0207711_10242993 3300025941 Bacteria 1651
79 Ga0207689_10140457 3300025942 Unclassified 1989
80 Ga0207677_10314066 3300026023 Bacteria 1300
81 Ga0207641_10303687 3300026088 Bacteria 1508
82 Ga0207648_10164764 3300026089 Bacteria 1959
83 Ga0207675_100118597 3300026118 Unclassified 2502
84 Ga0207683_10115117 3300026121 Bacteria 2410
85 Ga0265327_10058791 3300031251 Bacteria 1972
86 Ga0307513_10221780 3300031456 Bacteria 1711
87 Ga0307509_10118960 3300031507 Bacteria 2624
88 Ga0307508_10000101 3300031616 Bacteria 100858
89 Ga0316575_10054183 3300031665 Bacteria 1597
90 Ga0316576_10336166 3300031727 Bacteria 1125
91 Ga0307405_10018299 3300031731 Bacteria 3861
92 Ga0316577_10108629 3300031733 Unclassified 1556
93 Ga0316583_10045259 3300032133 Bacteria 1554
94 Ga0316593_10030262 3300032168 Unclassified 1757
95 Ga0373947_0032436 3300035725 Unclassified 3078
96 Ga0373937_0124465 3300036401 Bacteria 2404
97 Ga0373937_0213882 3300036401 Bacteria 1814
98 Ga0316582_0077948 3300036647 Bacteria 2158
99 Ga0316582_0098639 3300036647 Bacteria 1932
100 Ga0316582_0139563 3300036647 Bacteria 1633
101 Ga0316584_0092564 3300036712 Bacteria 2263
102 Ga0316584_0198306 3300036712 Unclassified 1482
103 Ga0316584_0260771 3300036712 Bacteria 1264
104 Ga0400484_29998 3300038725 Unclassified 1655
105 Ga0400490_21661 3300038726 Bacteria 8429
106 Ga0400491_11999 3300038727 Bacteria 8042
107 Ga0400485_05205 3300038735 Bacteria 1846
108 Ga0400488_11631 3300038741 Bacteria 1944
109 Ga0400488_18027 3300038741 Unclassified 2036
110 Ga0400488_35741 3300038741 Bacteria 2673
111 Ga0400486_13469 3300038742 Bacteria 2620
112 Ga0400483_034564 3300039062 Bacteria 2667
113 Ga0400483_095543 3300039062 Bacteria 1668
114 Ga0400483_192154 3300039062 Bacteria 6484
115 Ga0400483_207980 3300039062 Bacteria 10087
116 Ga0400483_290125 3300039062 Bacteria 3832
117 Ga0400487_50955 3300039110 Bacteria 1885
118 Ga0436363_0102840 3300039450 Bacteria 1746
119 Ga0439466_0034017 3300041411 Bacteria 1729
120 Ga0439449_0035102 3300042007 Bacteria 1867
121 Ga0439457_014712 3300042014 Bacteria 1749
122 Ga0439459_0009967 3300042438 Bacteria 1648
123 Ga0439460_0005438 3300042461 Unclassified 3124
124 Ga0451577_0282752 3300042876 Bacteria 1503
125 Ga0466966_0104919 3300044684 Bacteria 1745
126 Ga0466961_0035704 3300044693 Bacteria 3191
127 Ga0453684_0401278 3300044712 Bacteria 1535
128 Ga0453684_0407478 3300044712 Bacteria 1521
129 Ga0466971_0057109 3300044719 Bacteria 1760
130 Ga0466959_0121281 3300045049 Bacteria 1858
131 Ga0466958_0109910 3300045836 Bacteria 1720
132 Ga0495651_0207715 3300046462 Bacteria 1365
133 Ga0495639_0010695 3300046475 Bacteria 3950
134 Ga0495608_0114724 3300046511 Bacteria 1730
135 Ga0495663_0022560 3300046525 Bacteria 1819
136 Ga0495652_0200781 3300046529 Bacteria 1513
137 Ga0495598_0012262 3300046537 Bacteria 2098
138 Ga0495621_0014638 3300046539 Bacteria 2486
139 Ga0495633_0093876 3300046558 Bacteria 1394
140 Ga0495656_0084556 3300046615 Bacteria 1439
141 Ga0495657_0097330 3300046675 Bacteria 1879
142 Ga0495670_0070288 3300046691 Bacteria 1771
143 Ga0495602_0174001 3300048088 Bacteria 1668
144 Ga0466983_0311111 3300048986 Bacteria 1187
145 Ga0501036_0189602 3300049572 Bacteria 1730
146 Ga0501039_0191027 3300049575 Bacteria 1610
147 Ga0501042_0230580 3300049578 Unclassified 1336
148 Ga0501042_0230811 3300049578 Bacteria 1335
149 Ga0501048_0193536 3300049582 Bacteria 1441
150 Ga0501075_0332018 3300049591 Unclassified 1159
151 Ga0501076_0206898 3300049592 Bacteria 1603
152 Ga0501035_0199247 3300049822 Bacteria 1718
153 nmdc:mga03683_19811_c1 3300050489 Bacteria 2573
154 nmdc:mga03683_6431_c1 3300050489 Bacteria 4022
155 nmdc:mga0k408_48171_c1 3300050493 Bacteria 2465
156 nmdc:mga0k408_6119_c1 3300050493 Bacteria 6414
157 nmdc:mga0rr50_168517_c1 3300050513 Bacteria 1783
158 Ga0500591_091447 3300053115 Bacteria 1327
159 Ga0500559_0050918 3300053136 Bacteria 1828
160 Ga0500574_004054 3300053141 Bacteria 2681
161 Ga0500622_0025485 3300053156 Unclassified 3124
162 Ga0500567_092369 3300053723 Bacteria 1279
163 Ga0466962_0038085 3300061719 Bacteria 2303
164 2643895847 2643221577 Bacteria 3710843
165 2929526482 2929520902 Bacteria 6765052
166 Ga0495687_062601
167 JGI25156J39149_1008068
168 JGI25162J39368_1004747
169 JGI25154J39366_1005639
170 JGI25164J39214_1004220
171 JGI25165J46597_1008094
172 rootH1_10035907
173 rootH1_10317307
174 Ga0055527_1005963
175 Ga0055535_1000627
176 Ga0055542_1000630
177 Ga0055529_1000594
178 Ga0070682_100102121
179 Ga0068868_100177843
180 Ga0070689_100147553
181 Ga0070669_100171461
182 Ga0070659_100039733
183 Ga0070667_100306938
184 Ga0070709_10173868
185 Ga0070694_100081004
186 Ga0070678_100097253
187 Ga0068867_100165273
188 Ga0070697_100098741
189 Ga0068859_100061899
190 Ga0068866_10087425
191 Ga0068861_100117118
192 Ga0068858_100399631
193 Ga0081538_10089450
194 Ga0075366_10002436
195 Ga0075366_10078735
196 Ga0097621_100141391
197 Ga0068871_100176323
198 Ga0075428_100130193
199 Ga0068865_100176900
200 Ga0097620_100061901
201 Ga0075435_100140292
202 Ga0099795_10065381
203 Ga0105240_10269731
204 Ga0114129_10380728
205 Ga0105243_10225355
206 Ga0105242_10215479
207 Ga0105248_10246636
208 Ga0105238_10054777
209 Ga0105249_10098809
210 Ga0105249_10100501
211 Ga0105246_10297288
212 Ga0157373_10052208
213 Ga0157370_10305441
214 Ga0157370_10312024
215 Ga0163162_10235025
216 Ga0163162_10278951
217 Ga0163162_10312957
218 Ga0157372_10160983
219 Ga0157375_10268376
220 Ga0182008_10000343
221 Ga0157376_10197888
222 Ga0182007_10000070
223 Ga0182007_10033698
224 Ga0213872_10019271
225 Ga0209672_108287
226 Ga0207427_105789
227 Ga0209437_108171
228 Ga0209258_107853
229 Ga0209646_1002562
230 Ga0209026_1011480
231 Ga0209148_1012515
232 Ga0209759_1002761
233 Ga0209759_1010309
234 Ga0209233_1021324
235 Ga0209455_1016918
236 Ga0207642_10086101
237 Ga0207695_10167377
238 Ga0207657_10105011
239 Ga0207681_10207993
240 Ga0207694_10052686
241 Ga0207670_10033807
242 Ga0207704_10112827
243 Ga0207711_10242993
244 Ga0207689_10140457
245 Ga0207677_10314066
246 Ga0207641_10303687
247 Ga0207648_10164764
248 Ga0207675_100118597
249 Ga0207683_10115117
250 Ga0265327_10058791
251 Ga0307513_10221780
252 Ga0307509_10118960
253 Ga0307508_10000101
254 Ga0316575_10054183
255 Ga0316576_10336166
256 Ga0307405_10018299
257 Ga0316577_10108629
258 Ga0316583_10045259
259 Ga0316593_10030262
260 Ga0373947_0032436
261 Ga0373937_0124465
262 Ga0373937_0213882
263 Ga0316582_0077948
264 Ga0316582_0098639
265 Ga0316582_0139563
266 Ga0316584_0092564
267 Ga0316584_0198306
268 Ga0316584_0260771
269 Ga0400484_29998
270 Ga0400490_21661
271 Ga0400491_11999
272 Ga0400485_05205
273 Ga0400488_11631
274 Ga0400488_18027
275 Ga0400488_35741
276 Ga0400486_13469
277 Ga0400483_034564
278 Ga0400483_095543
279 Ga0400483_192154
280 Ga0400483_207980
281 Ga0400483_290125
282 Ga0400487_50955
283 Ga0436363_0102840
284 Ga0439466_0034017
285 Ga0439449_0035102
286 Ga0439457_014712
287 Ga0439459_0009967
288 Ga0439460_0005438
289 Ga0451577_0282752
290 Ga0466966_0104919
291 Ga0466961_0035704
292 Ga0453684_0401278
293 Ga0453684_0407478
294 Ga0466971_0057109
295 Ga0466959_0121281
296 Ga0466958_0109910
297 Ga0495651_0207715
298 Ga0495639_0010695
299 Ga0495608_0114724
300 Ga0495663_0022560
301 Ga0495652_0200781
302 Ga0495598_0012262
303 Ga0495621_0014638
304 Ga0495633_0093876
305 Ga0495656_0084556
306 Ga0495657_0097330
307 Ga0495670_0070288
308 Ga0495602_0174001
309 Ga0466983_0311111
310 Ga0501036_0189602
311 Ga0501039_0191027
312 Ga0501042_0230580
313 Ga0501042_0230811
314 Ga0501048_0193536
315 Ga0501075_0332018
316 Ga0501076_0206898
317 Ga0501035_0199247
318 nmdc:mga03683_19811_c1
319 nmdc:mga03683_6431_c1
320 nmdc:mga0k408_48171_c1
321 nmdc:mga0k408_6119_c1
322 nmdc:mga0rr50_168517_c1
323 Ga0500591_091447
324 Ga0500559_0050918
325 Ga0500574_004054
326 Ga0500622_0025485
327 Ga0500567_092369
328 Ga0466962_0038085
329 2643895847
330 2929526482

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02371

Transposase_20

Transposase IS116/IS110/IS902 family

212

298

0.93

PF01548

DEDD_Tnp_IS110

Transposase

5

150

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
6j9f-assembly1.cif.gz_J cryo-em structure of xanthomonos oryzae transcription elongation complex with the bacteriophage protein p7 0.7764 4 48
7ess-assembly1.cif.gz_B structure-guided studies of the holliday junction resolvase ruvx provide novel insights into atp-stimulated cleavage of branched dna and rna substrates 0.7638 2 77
3htv-assembly1.cif.gz_A-2 crystal structure of d-allose kinase (np_418508.1) from escherichia coli k12 at 1.95 a resolution 0.7457 2 76
6ude-assembly1.cif.gz_D crystal structure of glycerol kinase from elizabethkingia anophelis nuhp1 in complex with adp and glycerol 0.7393 1 55
3k0s-assembly1.cif.gz_A crystal structure of e.coli dna mismatch repair protein muts, d693n mutant, in complex with gt mismatched dna 0.7382 2 76
ID Description Score Start End Superfamily
af_Q4AE70_24_140_2.30.29.30 Mainly Beta;Roll;PH-domain like;Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.883 7 32 2.30.29.30
af_O07745_1_380_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.8487 1 77 3.30.420.40
af_Q23405_33_196_3.30.420.110 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;MutS, connector domain 0.8078 3 77 3.30.420.110
4bc2A01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.7856 2 32 3.30.420.40
af_O07182_4_158_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.7727 6 149 3.30.420.10
ID Description Score Start End GO Terms
AF-A0A7H9UP55-F1-model_v4 deleted 0.9427 1 76
AF-A0A2P6HHU5-F1-model_v4 deleted 0.9339 1 246
AF-A0A2P6HHU5-F1-model_v4 deleted 0.9266 1 246
AF-A0A6C2U4S1-F1-model_v4 Transposase IS110-like N-terminal domain-containing protein 0.926 2 257 GO:0003677
GO:0004803
GO:0006313
AF-A0A2P7S5T1-F1-model_v4 IS110 family transposase 0.922 1 77 GO:0003677
GO:0004803
GO:0006313

Map