F241113

General Info

Members Datasets Scaffolds Average Seq Length
163 123 157 342

Family's Representative Sequence

Representative Sequence 3300005468|Ga0070707_100033529|Ga0070707_1000335292
Length 398
Sequence MAYERRVIALLTYRWQVYSSLHSRSCAGHKSELEQTREDERFSQFFSDRRGGRFQKMHRTSSKRSTIAEIAAQAGVSMPTVSRVLNGRPDVAPATRARIEKIIEENGYIRNGAAKGLRKGSGIIDLLVPGLDNPYVTEIVRGVEEALKRTDLRFALSFTQDQALGERQWLKKIANSATEGAVLVLAHGQSSRLDELRQRGISFVVVDHRGELGPDVPSVGATNWAGGRVAAEYLLSLGHRRIAMIAGPASLRCSLDRIAGYRAALEAAGIPIDPELIRPGDFRLQSGYIQTSALLALPDPPTAIFAGNDLQAMGAYKALYLRNIHVPERMSVIGFDDIPFTTIVSPSLTSVRQPLFDMGRVATTMLLRLIAGEQLDSSRVELPTTLITRESCASPPSP

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2643221647 Streptomyces sp. Root369 Isolate Unclassified
3 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
4 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
5 2882806704 Pelagerythrobacter rhizovicinus AY-3R Isolate Rhizosphere
6 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
7 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
8 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
9 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
10 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
11 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
12 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
13 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
14 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
25 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
26 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
31 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
32 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
36 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
37 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
38 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
46 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
47 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
48 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
49 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
50 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
51 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
52 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
70 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
71 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
72 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
73 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
74 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
75 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
76 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
77 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
78 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
79 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
80 3300042136 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 Metagenome Rhizosphere
81 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
82 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
83 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
84 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
85 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
86 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
87 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
88 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
89 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
90 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
91 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
92 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
93 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
94 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
95 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
96 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
97 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
98 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
105 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
106 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
107 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
108 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
109 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
110 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
111 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
112 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
114 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
115 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
116 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
117 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
118 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
119 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
120 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
121 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
122 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
123 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.64
Metatranscriptomes 3.68
Isolates 3.68

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.75
Nodule 0
Rhizoplane 0.61
Rhizosphere 86.5
Stem 0
Stem Tuber 0
Unclassified 6.13

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2993338 2162886007 Bacteria 5242
2 JGI25165J46597_1000024 3300003214 Bacteria 335150
3 rootH1_10058143 3300003323 Bacteria 1895
4 rootH1_10188956 3300003323 Unclassified 3410
5 Ga0058862_11202540 3300004803 Bacteria 1466
6 Ga0065707_10110322 3300005295 Bacteria 2419
7 Ga0070658_10023866 3300005327 Bacteria 4906
8 Ga0070683_100000373 3300005329 Bacteria 31119
9 Ga0070691_10009172 3300005341 Bacteria 4522
10 Ga0070714_100170513 3300005435 Bacteria 1975
11 Ga0070708_100040692 3300005445 Plasmid 4071
12 Ga0070681_10029207 3300005458 Bacteria 5535
13 Ga0070707_100033529 3300005468 Bacteria 4897
14 Ga0070698_100020523 3300005471 Bacteria 6927
15 Ga0070698_100187978 3300005471 Unclassified 2003
16 Ga0070679_100053602 3300005530 Bacteria 4015
17 Ga0070697_100053314 3300005536 Plasmid 3287
18 Ga0070665_100327884 3300005548 Bacteria 1535
19 Ga0068857_100294768 3300005577 Bacteria 1494
20 Ga0068859_100113769 3300005617 Bacteria 2770
21 Ga0068864_100002420 3300005618 Bacteria 15418
22 Ga0068864_100013414 3300005618 Bacteria 6792
23 Ga0068858_100000364 3300005842 Bacteria 47634
24 Ga0068858_100002538 3300005842 Bacteria 18403
25 Ga0068858_100089320 3300005842 Bacteria 2867
26 Ga0068860_100223708 3300005843 Bacteria 1828
27 Ga0068862_100061007 3300005844 Bacteria 3241
28 Ga0075428_100063031 3300006844 Bacteria 4058
29 Ga0075431_100049173 3300006847 Bacteria 4348
30 Ga0075431_100164695 3300006847 Bacteria 2279
31 Ga0075429_100259790 3300006880 Bacteria 1520
32 Ga0097620_100113769 3300006931 Bacteria 2770
33 Ga0105245_10001517 3300009098 Bacteria 21010
34 Ga0114129_10210913 3300009147 Unclassified 2626
35 Ga0105241_10131326 3300009174 Unclassified 2028
36 Ga0105242_10048928 3300009176 Bacteria 3438
37 Ga0105248_10003996 3300009177 Bacteria 16305
38 Ga0105248_10005512 3300009177 Bacteria 13900
39 Ga0105238_10068431 3300009551 Bacteria 3551
40 Ga0157370_10012716 3300013104 Bacteria 8711
41 Ga0157369_10007664 3300013105 Bacteria 12418
42 Ga0157369_10283029 3300013105 Bacteria 1727
43 Ga0157374_10125063 3300013296 Bacteria 2485
44 Ga0163162_10002041 3300013306 Bacteria 19002
45 Ga0163162_10007046 3300013306 Bacteria 10898
46 Ga0163162_10110390 3300013306 Bacteria 2847
47 Ga0157372_10332387 3300013307 Bacteria 1770
48 Ga0163163_10068853 3300014325 Bacteria 3522
49 Ga0197907_10526390 3300020069 Bacteria 1360
50 Ga0206356_10056524 3300020070 Bacteria 2752
51 Ga0206352_10300038 3300020078 Bacteria 2242
52 Ga0206350_10963061 3300020080 Bacteria 2237
53 Ga0224712_10005158 3300022467 Bacteria 3607
54 Ga0209437_105758 3300025233 Bacteria 2097
55 Ga0209233_1000084 3300025261 Bacteria 335222
56 Ga0207684_10040444 3300025910 Bacteria 3952
57 Ga0207707_10024195 3300025912 Bacteria 5312
58 Ga0207660_10074208 3300025917 Bacteria 2482
59 Ga0207657_10226583 3300025919 Bacteria 1496
60 Ga0207652_10082080 3300025921 Bacteria 2820
61 Ga0207646_10061797 3300025922 Unclassified 3343
62 Ga0207694_10022948 3300025924 Bacteria 4735
63 Ga0207687_10000734 3300025927 Bacteria 22251
64 Ga0207664_10022779 3300025929 Bacteria 4684
65 Ga0207686_10032960 3300025934 Bacteria 3088
66 Ga0207711_10025264 3300025941 Bacteria 4984
67 Ga0207711_10036796 3300025941 Bacteria 4154
68 Ga0207661_10011227 3300025944 Bacteria 6481
69 Ga0207703_10000383 3300026035 Bacteria 47353
70 Ga0207703_10000901 3300026035 Bacteria 29064
71 Ga0207676_10001797 3300026095 Bacteria 15722
72 Ga0207674_10303565 3300026116 Bacteria 1545
73 Ga0207675_100082688 3300026118 Bacteria 3012
74 Ga0207698_10113028 3300026142 Bacteria 2281
75 Ga0265319_1005195 3300028563 Bacteria 6290
76 Ga0265318_10005652 3300028577 Bacteria 5848
77 Ga0265338_10013626 3300028800 Bacteria 9154
78 Ga0265320_10015215 3300031240 Bacteria 4355
79 Ga0265320_10135816 3300031240 Unclassified 1116
80 Ga0307508_10000166 3300031616 Bacteria 79602
81 Ga0307508_10002171 3300031616 Bacteria 21014
82 Ga0265314_10017597 3300031711 Bacteria 5604
83 Ga0307414_10008736 3300032004 Bacteria 5774
84 Ga0307414_10060485 3300032004 Bacteria 2679
85 Ga0395899_0090830 3300037312 Bacteria 2214
86 Ga0395898_0064003 3300037466 Bacteria 3568
87 Ga0395905_0219449 3300037471 Bacteria 1780
88 Ga0395901_0261312 3300038443 Bacteria 1802
89 Ga0395901_0537494 3300038443 Bacteria 1186
90 Ga0450900_001546 3300042136 Bacteria 2266
91 Ga0466969_0015363 3300044656 Bacteria 4013
92 Ga0466966_0030710 3300044684 Bacteria 3486
93 Ga0466961_0110811 3300044693 Bacteria 1727
94 Ga0466963_0005379 3300044694 Bacteria 7494
95 Ga0466963_0007117 3300044694 Bacteria 6664
96 Ga0466963_0030843 3300044694 Bacteria 3462
97 Ga0466963_0083785 3300044694 Bacteria 2163
98 Ga0453684_0156018 3300044712 Bacteria 2706
99 Ga0453684_0303875 3300044712 Unclassified 1813
100 Ga0466957_0041857 3300044842 Bacteria 2770
101 Ga0466957_0066767 3300044842 Bacteria 2218
102 Ga0466957_0095187 3300044842 Bacteria 1870
103 Ga0466957_0130718 3300044842 Bacteria 1608
104 Ga0466959_0001192 3300045049 Bacteria 15698
105 Ga0466959_0041729 3300045049 Bacteria 3387
106 Ga0466958_0007971 3300045836 Bacteria 5854
107 Ga0466958_0012564 3300045836 Bacteria 4801
108 Ga0466958_0065735 3300045836 Bacteria 2213
109 Ga0466967_0009202 3300045976 Bacteria 7312
110 Ga0466967_0011208 3300045976 Bacteria 6776
111 Ga0466967_0055273 3300045976 Bacteria 3497
112 Ga0495638_0000266 3300046460 Bacteria 70490
113 Ga0495654_0111900 3300046530 Bacteria 1245
114 Ga0495625_0000966 3300046660 Bacteria 38161
115 Ga0495649_0000239 3300046694 Bacteria 48404
116 Ga0495686_0001495 3300047472 Bacteria 25320
117 Ga0495686_0015208 3300047472 Bacteria 5266
118 Ga0496115_0025725 3300048918 Bacteria 4587
119 Ga0496121_0000163 3300048924 Bacteria 145648
120 Ga0496121_0022051 3300048924 Bacteria 6202
121 Ga0496125_0059667 3300048928 Bacteria 3072
122 Ga0496125_0085880 3300048928 Bacteria 2382
123 Ga0501032_0117925 3300049569 Bacteria 1755
124 Ga0501033_0285193 3300049570 Bacteria 1165
125 Ga0501034_0147068 3300049571 Bacteria 2333
126 Ga0501037_0040599 3300049573 Bacteria 3424
127 Ga0501037_0059194 3300049573 Unclassified 2795
128 Ga0501043_0181556 3300049579 Bacteria 1639
129 Ga0501047_0003657 3300049581 Bacteria 14496
130 Ga0501047_0263408 3300049581 Bacteria 1571
131 Ga0501067_0047127 3300049583 Bacteria 2391
132 Ga0501069_0038391 3300049585 Bacteria 2644
133 Ga0501070_0008961 3300049586 Bacteria 8462
134 Ga0501070_0042455 3300049586 Bacteria 3788
135 Ga0501070_0149234 3300049586 Bacteria 1929
136 Ga0501072_0003295 3300049588 Bacteria 12146
137 Ga0501074_0004778 3300049590 Bacteria 9710
138 Ga0501074_0074102 3300049590 Bacteria 2444
139 Ga0501079_0030367 3300049741 Bacteria 4152
140 Ga0501080_0081815 3300049742 Bacteria 2999
141 Ga0501083_0035734 3300049744 Bacteria 3393
142 Ga0501035_0029476 3300049822 Bacteria 5004
143 Ga0501044_0003794 3300049823 Bacteria 16974
144 Ga0501044_0005107 3300049823 Bacteria 14641
145 Ga0501044_0111561 3300049823 Bacteria 2742
146 nmdc:mga05p37_318234_c1 3300050507 Bacteria 1842
147 nmdc:mga06r32_429403_c1 3300050510 Bacteria 1302
148 nmdc:mga0n895_656752_c1 3300050512 Bacteria 1047
149 Ga0500646_0000741 3300053090 Bacteria 9192
150 Ga0500658_0005605 3300053134 Bacteria 4675
151 Ga0500559_0002499 3300053136 Bacteria 9454
152 Ga0500573_0013760 3300053140 Bacteria 4567
153 Ga0500573_0022659 3300053140 Bacteria 3604
154 Ga0500573_0088978 3300053140 Bacteria 1746
155 Ga0500616_0045946 3300053153 Bacteria 2324
156 Ga0500637_0039140 3300053178 Bacteria 2674
157 Ga0466962_0026033 3300061719 Bacteria 2809

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300053090 Ga0500646_0000741 Ga0500646_0000741_8130_9170 300
2 3300044693 Ga0466961_0110811 Ga0466961_0110811_84_1019 303
3 3300044842 Ga0466957_0130718 Ga0466957_0130718_165_1109 310
4 3300049581 Ga0501047_0263408 Ga0501047_0263408_587_1540 311
5 3300049823 Ga0501044_0111561 Ga0501044_0111561_100_1053 311
6 3300006844 Ga0075428_100063031 Ga0075428_1000630314 315
7 3300005445 Ga0070708_100040692 Ga0070708_1000406921 316
8 3300005536 Ga0070697_100053314 Ga0070697_1000533142 316
9 3300005471 Ga0070698_100187978 Ga0070698_1001879781 317
10 iso_pu_bacteria 2675903059 2676486342 322
11 3300044684 Ga0466966_0030710 Ga0466966_0030710_577_1581 323
12 3300005548 Ga0070665_100327884 Ga0070665_1003278842 325
13 3300005842 Ga0068858_100089320 Ga0068858_1000893203 325
14 3300013306 Ga0163162_10007046 Ga0163162_100070467 325
15 3300005618 Ga0068864_100002420 Ga0068864_10000242014 326
16 3300005842 Ga0068858_100002538 Ga0068858_1000025384 326
17 3300005843 Ga0068860_100223708 Ga0068860_1002237082 326
18 3300009177 Ga0105248_10003996 Ga0105248_1000399610 326
19 3300013306 Ga0163162_10002041 Ga0163162_1000204112 326
20 3300013307 Ga0157372_10332387 Ga0157372_103323871 326
21 3300014325 Ga0163163_10068853 Ga0163163_100688533 326
22 3300025941 Ga0207711_10036796 Ga0207711_100367961 326
23 3300026035 Ga0207703_10000901 Ga0207703_100009011 326
24 3300026095 Ga0207676_10001797 Ga0207676_1000179711 326
25 3300026118 Ga0207675_100082688 Ga0207675_1000826882 326
26 3300031616 Ga0307508_10002171 Ga0307508_100021718 326
27 3300042136 Ga0450900_001546 Ga0450900_001546_1190_2224 326
28 3300053140 Ga0500573_0022659 Ga0500573_0022659_1478_2626 326
29 3300003323 rootH1_10058143 rootH1_100581432 327
30 3300009177 Ga0105248_10005512 Ga0105248_100055127 327
31 3300025941 Ga0207711_10025264 Ga0207711_100252644 327
32 3300048928 Ga0496125_0059667 Ga0496125_0059667_673_1704 327
33 3300048928 Ga0496125_0085880 Ga0496125_0085880_82_1104 327
34 3300049569 Ga0501032_0117925 Ga0501032_0117925_488_1519 327
35 3300049570 Ga0501033_0285193 Ga0501033_0285193_87_1118 327
36 3300049573 Ga0501037_0040599 Ga0501037_0040599_1166_2197 327
37 3300049579 Ga0501043_0181556 Ga0501043_0181556_110_1141 327
38 3300049581 Ga0501047_0003657 Ga0501047_0003657_2939_3970 327
39 3300049586 Ga0501070_0149234 Ga0501070_0149234_635_1666 327
40 3300049822 Ga0501035_0029476 Ga0501035_0029476_554_1585 327
41 3300049823 Ga0501044_0003794 Ga0501044_0003794_15907_16938 327
42 3300053136 Ga0500559_0002499 Ga0500559_0002499_3109_4101 327
43 3300025929 Ga0207664_10022779 Ga0207664_100227794 328
44 3300006847 Ga0075431_100164695 Ga0075431_1001646952 329
45 iso_pu_bacteria 2808606306 2808628927 329
46 3300037466 Ga0395898_0064003 Ga0395898_0064003_889_1911 330
47 3300044694 Ga0466963_0005379 Ga0466963_0005379_941_1945 330
48 3300044694 Ga0466963_0007117 Ga0466963_0007117_57_1061 330
49 3300044712 Ga0453684_0156018 Ga0453684_0156018_322_1344 330
50 3300044842 Ga0466957_0066767 Ga0466957_0066767_607_1611 330
51 3300044842 Ga0466957_0095187 Ga0466957_0095187_74_1078 330
52 3300045836 Ga0466958_0007971 Ga0466958_0007971_2218_3222 330
53 3300045836 Ga0466958_0065735 Ga0466958_0065735_1057_2061 330
54 3300045976 Ga0466967_0009202 Ga0466967_0009202_3476_4480 330
55 3300045976 Ga0466967_0011208 Ga0466967_0011208_3655_4659 330
56 3300049583 Ga0501067_0047127 Ga0501067_0047127_653_1657 330
57 3300049585 Ga0501069_0038391 Ga0501069_0038391_143_1147 330
58 3300053140 Ga0500573_0013760 Ga0500573_0013760_1887_2930 330
59 3300053140 Ga0500573_0088978 Ga0500573_0088978_516_1559 330
60 iso_pu_bacteria 2643221647 2644265660 330
61 iso_pu_bacteria 2954691527 2954692088 330
62 iso_pu_bacteria 2954701450 2954707155 330
63 3300003214 JGI25165J46597_1000024 JGI25165J46597_1000024182 331
64 3300003323 rootH1_10188956 rootH1_101889561 331
65 3300005842 Ga0068858_100000364 Ga0068858_10000036436 331
66 3300006847 Ga0075431_100049173 Ga0075431_1000491731 331
67 3300009098 Ga0105245_10001517 Ga0105245_100015176 331
68 3300009176 Ga0105242_10048928 Ga0105242_100489282 331
69 3300009551 Ga0105238_10068431 Ga0105238_100684312 331
70 3300013296 Ga0157374_10125063 Ga0157374_101250632 331
71 3300013306 Ga0163162_10110390 Ga0163162_101103902 331
72 3300025233 Ga0209437_105758 Ga0209437_1057582 331
73 3300025261 Ga0209233_1000084 Ga0209233_1000084129 331
74 3300025922 Ga0207646_10061797 Ga0207646_100617972 331
75 3300025924 Ga0207694_10022948 Ga0207694_100229482 331
76 3300025927 Ga0207687_10000734 Ga0207687_100007344 331
77 3300025934 Ga0207686_10032960 Ga0207686_100329602 331
78 3300026035 Ga0207703_10000383 Ga0207703_1000038315 331
79 3300031240 Ga0265320_10135816 Ga0265320_101358161 331
80 3300031616 Ga0307508_10000166 Ga0307508_100001667 331
81 3300032004 Ga0307414_10008736 Ga0307414_100087361 331
82 3300032004 Ga0307414_10060485 Ga0307414_100604852 331
83 3300038443 Ga0395901_0537494 Ga0395901_0537494_25_1077 331
84 3300044656 Ga0466969_0015363 Ga0466969_0015363_785_1822 331
85 3300044842 Ga0466957_0041857 Ga0466957_0041857_1610_2638 331
86 3300045049 Ga0466959_0041729 Ga0466959_0041729_1670_2707 331
87 3300045836 Ga0466958_0012564 Ga0466958_0012564_572_1600 331
88 3300046460 Ga0495638_0000266 Ga0495638_0000266_26286_27308 331
89 3300046530 Ga0495654_0111900 Ga0495654_0111900_144_1166 331
90 3300046660 Ga0495625_0000966 Ga0495625_0000966_24429_25451 331
91 3300047472 Ga0495686_0001495 Ga0495686_0001495_4135_5160 331
92 3300047472 Ga0495686_0015208 Ga0495686_0015208_949_1971 331
93 3300048924 Ga0496121_0000163 Ga0496121_0000163_52403_53422 331
94 3300048924 Ga0496121_0022051 Ga0496121_0022051_1333_2400 331
95 3300049573 Ga0501037_0059194 Ga0501037_0059194_153_1196 331
96 3300049586 Ga0501070_0008961 Ga0501070_0008961_1022_2074 331
97 3300049588 Ga0501072_0003295 Ga0501072_0003295_9037_10089 331
98 3300049590 Ga0501074_0074102 Ga0501074_0074102_1070_2122 331
99 3300049741 Ga0501079_0030367 Ga0501079_0030367_254_1306 331
100 3300049744 Ga0501083_0035734 Ga0501083_0035734_435_1487 331
101 3300049823 Ga0501044_0005107 Ga0501044_0005107_374_1417 331
102 3300050510 nmdc:mga06r32_429403_c1 nmdc:mga06r32_429403_c1_152_1207 331
103 3300053134 Ga0500658_0005605 Ga0500658_0005605_2220_3239 331
104 3300053153 Ga0500616_0045946 Ga0500616_0045946_901_1923 331
105 iso_pu_bacteria 2882806704 2882808740 331
106 3300004803 Ga0058862_11202540 Ga0058862_112025402 332
107 3300005327 Ga0070658_10023866 Ga0070658_100238662 332
108 3300005329 Ga0070683_100000373 Ga0070683_10000037331 332
109 3300005341 Ga0070691_10009172 Ga0070691_100091724 332
110 3300005435 Ga0070714_100170513 Ga0070714_1001705132 332
111 3300005458 Ga0070681_10029207 Ga0070681_100292076 332
112 3300005468 Ga0070707_100033529 Ga0070707_1000335292 332
113 3300005530 Ga0070679_100053602 Ga0070679_1000536025 332
114 3300005577 Ga0068857_100294768 Ga0068857_1002947683 332
115 3300013104 Ga0157370_10012716 Ga0157370_100127162 332
116 3300013105 Ga0157369_10007664 Ga0157369_1000766411 332
117 3300013105 Ga0157369_10283029 Ga0157369_102830292 332
118 3300020069 Ga0197907_10526390 Ga0197907_105263902 332
119 3300020070 Ga0206356_10056524 Ga0206356_100565242 332
120 3300020078 Ga0206352_10300038 Ga0206352_103000382 332
121 3300020080 Ga0206350_10963061 Ga0206350_109630612 332
122 3300022467 Ga0224712_10005158 Ga0224712_100051582 332
123 3300025912 Ga0207707_10024195 Ga0207707_100241955 332
124 3300025917 Ga0207660_10074208 Ga0207660_100742082 332
125 3300025919 Ga0207657_10226583 Ga0207657_102265832 332
126 3300025921 Ga0207652_10082080 Ga0207652_100820803 332
127 3300025944 Ga0207661_10011227 Ga0207661_100112275 332
128 3300026116 Ga0207674_10303565 Ga0207674_103035651 332
129 3300026142 Ga0207698_10113028 Ga0207698_101130282 332
130 3300028563 Ga0265319_1005195 Ga0265319_10051954 332
131 3300028577 Ga0265318_10005652 Ga0265318_100056521 332
132 3300028800 Ga0265338_10013626 Ga0265338_100136266 332
133 3300031240 Ga0265320_10015215 Ga0265320_100152154 332
134 3300031711 Ga0265314_10017597 Ga0265314_100175972 332
135 3300037312 Ga0395899_0090830 Ga0395899_0090830_192_1229 332
136 3300037471 Ga0395905_0219449 Ga0395905_0219449_709_1746 332
137 3300038443 Ga0395901_0261312 Ga0395901_0261312_549_1589 332
138 3300044694 Ga0466963_0030843 Ga0466963_0030843_1503_2537 332
139 3300044694 Ga0466963_0083785 Ga0466963_0083785_1046_2080 332
140 3300045049 Ga0466959_0001192 Ga0466959_0001192_11729_12769 332
141 3300045976 Ga0466967_0055273 Ga0466967_0055273_1921_2955 332
142 3300046694 Ga0495649_0000239 Ga0495649_0000239_28878_29927 332
143 3300048918 Ga0496115_0025725 Ga0496115_0025725_169_1206 332
144 3300049571 Ga0501034_0147068 Ga0501034_0147068_1028_2068 332
145 3300049586 Ga0501070_0042455 Ga0501070_0042455_1079_2119 332
146 3300049590 Ga0501074_0004778 Ga0501074_0004778_6426_7466 332
147 3300049742 Ga0501080_0081815 Ga0501080_0081815_1734_2774 332
148 3300053178 Ga0500637_0039140 Ga0500637_0039140_1155_2267 332
149 3300061719 Ga0466962_0026033 Ga0466962_0026033_223_1257 332
150 3300025910 Ga0207684_10040444 Ga0207684_100404443 333
151 3300005471 Ga0070698_100020523 Ga0070698_1000205233 335
152 3300005617 Ga0068859_100113769 Ga0068859_1001137693 335
153 3300006931 Ga0097620_100113769 Ga0097620_1001137691 335
154 3300050512 nmdc:mga0n895_656752_c1 nmdc:mga0n895_656752_c1_23_1030 335
155 3300005618 Ga0068864_100013414 Ga0068864_1000134145 340
156 3300005844 Ga0068862_100061007 Ga0068862_1000610071 340
157 3300009147 Ga0114129_10210913 Ga0114129_102109132 340
158 3300050507 nmdc:mga05p37_318234_c1 nmdc:mga05p37_318234_c1_250_1272 340
159 3300009174 Ga0105241_10131326 Ga0105241_101313262 341
160 2162886007 SwRhRL2b_contig_2993338 SwRhRL2b_0236.00003140 342
161 3300005295 Ga0065707_10110322 Ga0065707_101103222 342
162 3300006880 Ga0075429_100259790 Ga0075429_1002597901 342
163 3300044712 Ga0453684_0303875 Ga0453684_0303875_474_1502 342

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00356

LacI

Bacterial regulatory proteins, lacI family

66

111

0.99

PF13377

Peripla_BP_3

Periplasmic binding protein-like domain

231

392

0.96

PF00532

Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

121

390

0.92

PF13407

Peripla_BP_4

Periplasmic binding protein domain

124

374

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
2pua-assembly1.cif.gz_A crystal structure of the laci family member, purr, bound to dna: minor groove binding by alpha helices 0.9211 4 342
1jh9-assembly1.cif.gz_A-2 purine repressor mutant-hypoxanthine-purf operator complex 0.9211 4 342
2pue-assembly1.cif.gz_A crystal structure of the laci family member, purr, bound to dna: minor groove binding by alpha helices 0.9201 5 342
1bdh-assembly1.cif.gz_A purine repressor mutant-hypoxanthine-palindromic operator complex 0.9199 5 342
1vpw-assembly1.cif.gz_A-2 structure of the purr mutant, l54m, bound to hypoxanthine and purf operator dna 0.9185 5 342
ID Description Score Start End Superfamily
3k4hB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9486 169 295 3.40.50.2300
3kkeB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9445 169 295 3.40.50.2300
3bblA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9392 169 295 3.40.50.2300
1jhzB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9359 169 342 3.40.50.2300
1jh9A01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9343 5 61 1.10.260.40
ID Description Score Start End GO Terms
AF-A0A7C3S133-F1-model_v4 LacI family transcriptional regulator 0.9601 178 341 GO:0000976
GO:0003700
AF-A0A4V0ZJI8-F1-model_v4 Lactose operon repressor 0.9577 164 342 GO:0000976
GO:0003700
AF-A0A4Q6DTD8-F1-model_v4 deleted 0.9523 183 337
AF-A0A6V8PUR8-F1-model_v4 LacI family transcriptional regulator 0.9491 238 342 GO:0000976
GO:0003700
AF-A0A3N5T0C2-F1-model_v4 Transcriptional regulator LacI/GalR-like sensor domain-containing protein 0.948 228 336 GO:0000976
GO:0003700

Feature Viewer

pLDDT pTM Quality
88.08 0.77 High
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Predicted Structure (AlphaFold2)

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