F234587

General Info

Members Datasets Scaffolds Average Seq Length
160 119 320 159

Family's Representative Sequence

Representative Sequence 3300013104|Ga0157370_10511915|Ga0157370_105119152
Length 172
Sequence MKNKAQTENPASAAGTNAPHFEIHRVYVKDLSFEAPNTPHTFGEEWKPEVQLNLETKSNRLQDNQHEVVLTITANVTSNGKSAFLVEVHQAGIFVISGLEPDQLHHTLGSFCPNILFPYAREAVSDLVVRGGFPQLLLAPVNFDALYTQHMEEQKKQGKQTVSTEDSDGKVH

Samples

Sample ID Description Type Environment
1 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
2 3300000546 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
13 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
16 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
23 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
24 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
25 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
28 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
32 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
33 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
34 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
35 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
36 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
37 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
38 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028016 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 Metagenome Rhizosphere
55 3300028023 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 Metagenome Rhizosphere
56 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
57 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
58 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
59 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
60 3300030879 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
61 3300031010 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
62 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
63 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
64 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
65 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
66 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
67 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
68 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
69 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
70 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
71 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
72 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
73 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
74 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
75 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
76 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
77 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
78 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
79 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
80 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
81 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
82 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
83 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
84 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
85 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
86 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
87 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
88 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
89 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
90 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
91 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
92 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
93 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
94 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
95 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
96 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
97 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
98 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
99 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
100 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
101 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
102 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
103 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
104 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
105 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
106 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
107 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
108 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
109 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
110 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
111 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
115 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
116 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
117 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
118 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
119 8001522603 Methylomicrobium sp. RS1 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 90
Metatranscriptomes 9.38
Isolates 0.62

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.5
Nodule 0
Rhizoplane 3.12
Rhizosphere 78.12
Stem 0
Stem Tuber 0
Unclassified 11.25

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157370_10511915 3300013104 Unclassified 1102
2 LJNas_1008832 3300000546 Bacteria 1080
3 Ga0065704_10079570 3300005289 Bacteria 4129
4 Ga0070670_100415536 3300005331 Bacteria 1189
5 Ga0070661_100185307 3300005344 Bacteria 1585
6 Ga0070668_100255162 3300005347 Bacteria 1457
7 Ga0070669_100071203 3300005353 Bacteria 2572
8 Ga0070675_100048297 3300005354 Bacteria 3489
9 Ga0070675_101367207 3300005354 Bacteria 653
10 Ga0070673_100564911 3300005364 Bacteria 1035
11 Ga0070667_100350876 3300005367 Bacteria 1336
12 Ga0070711_100011613 3300005439 Bacteria 5474
13 Ga0070705_100043610 3300005440 Bacteria 2572
14 Ga0068867_100148381 3300005459 Bacteria 1840
15 Ga0070679_100852760 3300005530 Bacteria 854
16 Ga0070672_100228470 3300005543 Unclassified 1563
17 Ga0070686_100604058 3300005544 Bacteria 865
18 Ga0070665_100209763 3300005548 Bacteria 1948
19 Ga0070665_100433699 3300005548 Bacteria 1323
20 Ga0070704_100381457 3300005549 Bacteria 1198
21 Ga0070704_100832237 3300005549 Bacteria 826
22 Ga0068855_100243467 3300005563 Bacteria 2009
23 Ga0068855_101253237 3300005563 Bacteria 769
24 Ga0070702_100023235 3300005615 Bacteria 3292
25 Ga0068858_100002844 3300005842 Bacteria 17407
26 Ga0068860_100818082 3300005843 Bacteria 945
27 Ga0068862_100271464 3300005844 Bacteria 1551
28 Ga0075365_10305790 3300006038 Unclassified 1119
29 Ga0070715_10038094 3300006163 Bacteria 1994
30 Ga0070712_100151117 3300006175 Bacteria 1783
31 Ga0099794_10014876 3300007265 Bacteria 3420
32 Ga0099795_10000296 3300007788 Bacteria 8950
33 Ga0099795_10068073 3300007788 Bacteria 1337
34 Ga0105240_10000252 3300009093 Bacteria 106631
35 Ga0111539_10351892 3300009094 Bacteria 1714
36 Ga0111539_11569109 3300009094 Bacteria 764
37 Ga0105239_10312359 3300010375 Bacteria 1772
38 Ga0163162_10016543 3300013306 Bacteria 7208
39 Ga0157372_11170710 3300013307 Bacteria 889
40 Ga0157380_10070476 3300014326 Bacteria 2825
41 Ga0157379_11430340 3300014968 Unclassified 671
42 Ga0213876_10112733 3300021384 Bacteria 1443
43 Ga0209256_1062238 3300025299 Unclassified 865
44 Ga0207642_10314531 3300025899 Bacteria 912
45 Ga0207685_10026796 3300025905 Bacteria 2009
46 Ga0207695_10000523 3300025913 Bacteria 81427
47 Ga0207663_10015693 3300025916 Bacteria 4185
48 Ga0207649_10525353 3300025920 Unclassified 903
49 Ga0207681_10111403 3300025923 Unclassified 1991
50 Ga0207650_10060048 3300025925 Bacteria 2837
51 Ga0207659_10330404 3300025926 Bacteria 1260
52 Ga0207700_10482134 3300025928 Bacteria 1096
53 Ga0207704_10107675 3300025938 Bacteria 1875
54 Ga0207704_10165512 3300025938 Bacteria 1579
55 Ga0207667_10339204 3300025949 Bacteria 1534
56 Ga0207703_10030112 3300026035 Unclassified 4288
57 Ga0207641_12044445 3300026088 Bacteria 574
58 Ga0207648_10156444 3300026089 Bacteria 2012
59 Ga0209179_1003417 3300027512 Bacteria 2285
60 Ga0209588_1109112 3300027671 Bacteria 889
61 Ga0265354_1000419 3300028016 Bacteria 7430
62 Ga0265357_1011140 3300028023 Bacteria 912
63 Ga0265334_10000064 3300028573 Bacteria 78480
64 Ga0265338_10096994 3300028800 Bacteria 2417
65 Ga0265762_1002432 3300030760 Unclassified 3365
66 Ga0265762_1022693 3300030760 Bacteria 1161
67 Ga0265762_1065693 3300030760 Unclassified 753
68 Ga0265770_1000017 3300030878 Bacteria 16483
69 Ga0265765_1007040 3300030879 Bacteria 1208
70 Ga0265771_1002466 3300031010 Unclassified 990
71 Ga0265760_10000095 3300031090 Bacteria 23054
72 Ga0265316_10000213 3300031344 Bacteria 67886
73 Ga0307408_100558901 3300031548 Bacteria 1011
74 Ga0316579_10103728 3300031691 Bacteria 1363
75 Ga0265342_10220266 3300031712 Bacteria 1023
76 Ga0316576_10000425 3300031727 Bacteria 19505
77 Ga0316578_10004976 3300031728 Bacteria 6369
78 Ga0316578_10028463 3300031728 Bacteria 3164
79 Ga0307516_10000060 3300031730 Bacteria 118638
80 Ga0307516_10550127 3300031730 Bacteria 808
81 Ga0316577_10001170 3300031733 Bacteria 12043
82 Ga0316577_10005633 3300031733 Bacteria 6573
83 Ga0316583_10008883 3300032133 Bacteria 3623
84 Ga0316585_10000841 3300032137 Bacteria 7795
85 Ga0316580_10000606 3300032139 Bacteria 8422
86 Ga0316593_10008719 3300032168 Bacteria 2839
87 Ga0316593_10016479 3300032168 Bacteria 2240
88 Ga0316593_10027592 3300032168 Bacteria 1823
89 Ga0316593_10075206 3300032168 Unclassified 1172
90 Ga0307510_10116491 3300033180 Bacteria 2393
91 Ga0316588_1005961 3300033528 Bacteria 2412
92 Ga0316587_1080150 3300033529 Unclassified 617
93 Ga0316596_1001052 3300033541 Bacteria 5348
94 Ga0316596_1003729 3300033541 Bacteria 3366
95 Ga0373945_0035696 3300035116 Bacteria 1778
96 Ga0373957_0064130 3300035120 Bacteria 1428
97 Ga0373943_0365537 3300035170 Bacteria 829
98 Ga0373946_0438217 3300035171 Bacteria 664
99 Ga0316574_0012481 3300035398 Bacteria 4861
100 Ga0316574_0094176 3300035398 Unclassified 1913
101 Ga0316574_0424696 3300035398 Unclassified 835
102 Ga0373931_0228832 3300035691 Bacteria 1123
103 Ga0373937_0695766 3300036401 Bacteria 963
104 Ga0316582_0000200 3300036647 Bacteria 19080
105 Ga0316582_0013275 3300036647 Bacteria 4632
106 Ga0316584_0001377 3300036712 Bacteria 14478
107 Ga0316584_0013291 3300036712 Bacteria 5822
108 Ga0316584_0653464 3300036712 Bacteria 725
109 Ga0373925_0128193 3300037068 Bacteria 1976
110 Ga0373925_0739727 3300037068 Unclassified 811
111 Ga0400484_19368 3300038725 Bacteria 3590
112 Ga0400490_03630 3300038726 Bacteria 6581
113 Ga0400490_36565 3300038726 Bacteria 8987
114 Ga0400485_14160 3300038735 Bacteria 5669
115 Ga0400488_20617 3300038741 Bacteria 8044
116 Ga0400488_36231 3300038741 Bacteria 11413
117 Ga0400486_06149 3300038742 Bacteria 12924
118 Ga0400486_12000 3300038742 Bacteria 1641
119 Ga0400483_039465 3300039062 Bacteria 8785
120 Ga0400483_222691 3300039062 Bacteria 32176
121 Ga0400483_269514 3300039062 Bacteria 1802
122 Ga0400489_70401 3300039093 Bacteria 1245
123 Ga0400489_91687 3300039093 Bacteria 7872
124 Ga0400487_24072 3300039110 Bacteria 11468
125 Ga0400487_56653 3300039110 Bacteria 6176
126 Ga0436365_0653938 3300039437 Bacteria 5900
127 Ga0436365_1425685 3300039437 Bacteria 534
128 Ga0436365_1571212 3300039437 Bacteria 786
129 Ga0436361_0745061 3300039447 Bacteria 558
130 Ga0451577_0002503 3300042876 Bacteria 21799
131 Ga0451577_0023224 3300042876 Bacteria 5657
132 Ga0451577_0174985 3300042876 Bacteria 1934
133 Ga0453684_0027138 3300044712 Bacteria 8229
134 Ga0453684_0031880 3300044712 Bacteria 7391
135 Ga0453684_0438427 3300044712 Bacteria 1456
136 Ga0453684_0614678 3300044712 Bacteria 1190
137 Ga0451576_0037379 3300045051 Bacteria 5143
138 Ga0451576_0193801 3300045051 Bacteria 2122
139 Ga0451576_1241184 3300045051 Bacteria 778
140 Ga0495621_0017526 3300046539 Bacteria 2316
141 Ga0495645_0235993 3300046543 Bacteria 1223
142 Ga0495669_0041437 3300046684 Bacteria 2045
143 Ga0496104_0016216 3300048907 Bacteria 6764
144 Ga0496105_0008785 3300048908 Bacteria 7865
145 Ga0496114_0008704 3300048917 Bacteria 8041
146 Ga0496114_0210348 3300048917 Bacteria 1706
147 Ga0496115_0030814 3300048918 Bacteria 4222
148 Ga0496116_0000019 3300048919 Bacteria 533227
149 Ga0496121_0000018 3300048924 Bacteria 542045
150 Ga0496121_0548288 3300048924 Bacteria 724
151 Ga0501037_0914025 3300049573 Bacteria 575
152 Ga0501042_0855409 3300049578 Bacteria 662
153 Ga0501047_0001129 3300049581 Bacteria 26489
154 Ga0501047_0508479 3300049581 Bacteria 1031
155 Ga0501080_0183907 3300049742 Bacteria 1922
156 Ga0501035_0254570 3300049822 Bacteria 1490
157 nmdc:mga0yw44_223297_c1 3300050492 Unclassified 1249
158 nmdc:mga06z11_831375_c1 3300050494 Unclassified 563
159 Ga0495601_0631284 3300053077 Bacteria 686
160 8001526886 8001522603 Bacteria 4726425
161 Ga0157370_10511915
162 LJNas_1008832
163 Ga0065704_10079570
164 Ga0070670_100415536
165 Ga0070661_100185307
166 Ga0070668_100255162
167 Ga0070669_100071203
168 Ga0070675_100048297
169 Ga0070675_101367207
170 Ga0070673_100564911
171 Ga0070667_100350876
172 Ga0070711_100011613
173 Ga0070705_100043610
174 Ga0068867_100148381
175 Ga0070679_100852760
176 Ga0070672_100228470
177 Ga0070686_100604058
178 Ga0070665_100209763
179 Ga0070665_100433699
180 Ga0070704_100381457
181 Ga0070704_100832237
182 Ga0068855_100243467
183 Ga0068855_101253237
184 Ga0070702_100023235
185 Ga0068858_100002844
186 Ga0068860_100818082
187 Ga0068862_100271464
188 Ga0075365_10305790
189 Ga0070715_10038094
190 Ga0070712_100151117
191 Ga0099794_10014876
192 Ga0099795_10000296
193 Ga0099795_10068073
194 Ga0105240_10000252
195 Ga0111539_10351892
196 Ga0111539_11569109
197 Ga0105239_10312359
198 Ga0163162_10016543
199 Ga0157372_11170710
200 Ga0157380_10070476
201 Ga0157379_11430340
202 Ga0213876_10112733
203 Ga0209256_1062238
204 Ga0207642_10314531
205 Ga0207685_10026796
206 Ga0207695_10000523
207 Ga0207663_10015693
208 Ga0207649_10525353
209 Ga0207681_10111403
210 Ga0207650_10060048
211 Ga0207659_10330404
212 Ga0207700_10482134
213 Ga0207704_10107675
214 Ga0207704_10165512
215 Ga0207667_10339204
216 Ga0207703_10030112
217 Ga0207641_12044445
218 Ga0207648_10156444
219 Ga0209179_1003417
220 Ga0209588_1109112
221 Ga0265354_1000419
222 Ga0265357_1011140
223 Ga0265334_10000064
224 Ga0265338_10096994
225 Ga0265762_1002432
226 Ga0265762_1022693
227 Ga0265762_1065693
228 Ga0265770_1000017
229 Ga0265765_1007040
230 Ga0265771_1002466
231 Ga0265760_10000095
232 Ga0265316_10000213
233 Ga0307408_100558901
234 Ga0316579_10103728
235 Ga0265342_10220266
236 Ga0316576_10000425
237 Ga0316578_10004976
238 Ga0316578_10028463
239 Ga0307516_10000060
240 Ga0307516_10550127
241 Ga0316577_10001170
242 Ga0316577_10005633
243 Ga0316583_10008883
244 Ga0316585_10000841
245 Ga0316580_10000606
246 Ga0316593_10008719
247 Ga0316593_10016479
248 Ga0316593_10027592
249 Ga0316593_10075206
250 Ga0307510_10116491
251 Ga0316588_1005961
252 Ga0316587_1080150
253 Ga0316596_1001052
254 Ga0316596_1003729
255 Ga0373945_0035696
256 Ga0373957_0064130
257 Ga0373943_0365537
258 Ga0373946_0438217
259 Ga0316574_0012481
260 Ga0316574_0094176
261 Ga0316574_0424696
262 Ga0373931_0228832
263 Ga0373937_0695766
264 Ga0316582_0000200
265 Ga0316582_0013275
266 Ga0316584_0001377
267 Ga0316584_0013291
268 Ga0316584_0653464
269 Ga0373925_0128193
270 Ga0373925_0739727
271 Ga0400484_19368
272 Ga0400490_03630
273 Ga0400490_36565
274 Ga0400485_14160
275 Ga0400488_20617
276 Ga0400488_36231
277 Ga0400486_06149
278 Ga0400486_12000
279 Ga0400483_039465
280 Ga0400483_222691
281 Ga0400483_269514
282 Ga0400489_70401
283 Ga0400489_91687
284 Ga0400487_24072
285 Ga0400487_56653
286 Ga0436365_0653938
287 Ga0436365_1425685
288 Ga0436365_1571212
289 Ga0436361_0745061
290 Ga0451577_0002503
291 Ga0451577_0023224
292 Ga0451577_0174985
293 Ga0453684_0027138
294 Ga0453684_0031880
295 Ga0453684_0438427
296 Ga0453684_0614678
297 Ga0451576_0037379
298 Ga0451576_0193801
299 Ga0451576_1241184
300 Ga0495621_0017526
301 Ga0495645_0235993
302 Ga0495669_0041437
303 Ga0496104_0016216
304 Ga0496105_0008785
305 Ga0496114_0008704
306 Ga0496114_0210348
307 Ga0496115_0030814
308 Ga0496116_0000019
309 Ga0496121_0000018
310 Ga0496121_0548288
311 Ga0501037_0914025
312 Ga0501042_0855409
313 Ga0501047_0001129
314 Ga0501047_0508479
315 Ga0501080_0183907
316 Ga0501035_0254570
317 nmdc:mga0yw44_223297_c1
318 nmdc:mga06z11_831375_c1
319 Ga0495601_0631284
320 8001526886

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02556

SecB

Preprotein translocase subunit SecB

14

154

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
1qyn-assembly1.cif.gz_C crystal structure of secb from escherichia coli 0.9472 16 146
1qyn-assembly1.cif.gz_C crystal structure of secb from escherichia coli 0.9265 16 146
1fx3-assembly1.cif.gz_D crystal structure of h. influenzae secb 0.9173 16 148
1fx3-assembly1.cif.gz_D crystal structure of h. influenzae secb 0.8978 16 148
1ozb-assembly1.cif.gz_A crystal structure of secb complexed with seca c-terminus 0.8788 16 156
ID Description Score Start End Superfamily
1qynD00 Alpha Beta;Roll;Bacterial Protein-export protein SecB;SecB-like 0.939 16 149 3.10.420.10
1qynD00 Alpha Beta;Roll;Bacterial Protein-export protein SecB;SecB-like 0.9126 16 149 3.10.420.10
af_Q57803_2_154_3.10.420.10 Alpha Beta;Roll;Bacterial Protein-export protein SecB;SecB-like 0.7835 17 151 3.10.420.10
5jtlB00 Alpha Beta;Roll;Bacterial Protein-export protein SecB;SecB-like 0.7798 8 155 3.10.420.10
af_P95257_21_163_3.10.420.10 Alpha Beta;Roll;Bacterial Protein-export protein SecB;SecB-like 0.7629 17 139 3.10.420.10
ID Description Score Start End GO Terms
AF-A0A6V7KHH1-F1-model_v4 Protein-export chaperone SecB 0.9792 41 151 GO:0015031
GO:0051082
GO:0051262
AF-A0A3B8WCB3-F1-model_v4 Protein-export chaperone SecB 0.9698 41 152 GO:0015031
GO:0051082
GO:0051262
AF-K2AD99-F1-model_v4 Preprotein translocase subunit SecB 0.9697 40 151 GO:0015031
GO:0051082
GO:0051262
AF-A0A351SBV4-F1-model_v4 Protein-export chaperone SecB 0.9572 37 151 GO:0015031
GO:0051082
GO:0051262
AF-D2U335-F1-model_v4 Protein-export protein SecB 0.9535 16 151 GO:0005737
GO:0006457
GO:0015031
GO:0051082
GO:0051262

Map