F231428

General Info

Members Datasets Scaffolds Average Seq Length
159 109 154 425

Family's Representative Sequence

Representative Sequence 3300005364|Ga0070673_100089008|Ga0070673_1000890082
Length 499
Sequence MLLVALFVIGYLAIVFEHPLKLNKAASALVTGVACWTAYIFTGDAAVINGQLAHHMGELSQILFFLLGAMAIVELIDAHDGFEIITNRIRTTNRRKLLVTVALLAFVLSAVLDNLTASIVMMSLVRKLVSGDGDRMYYGNSGGAWSPIGDVTTTMLWIGGQITTTSVMSHVFLPSFISLAVPLLWIGRRMQGDVMRYGLQPEDITVATPPSMSGSTAFRLPKDAAAVGRTLAQINLRGRTGLSVVNIVRNDVAADVSPDGVLRAGDVLELSGTSEAIALGLNLLINGVAPKRTTAAERRSIFACGIGVLLFVPIFKTVTHLPPFMGMLLGLGALWVWTEVLHKTKTNESKSALSVAGALQRVDAQSVLFFLGILLAIGALQSRGTLAALARLMDETIGNVDVITVSIGLLSAIVDNVPLVAAAQGMYSLSTFPADHNFCLFLCYCAGTGGSILIIGSAAGIAVMGIQRITFGWYVRHLSLPALLGYAAGALTYVALAAR

Samples

Sample ID Description Type Environment
1 2811994881 Pseudomonas sp. SLBN-26 Isolate Unclassified
2 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
3 2923519811 Pseudomonas otitidis SLBN-103 Isolate Rhizosphere
4 3007252601 Pseudomonas punonensis D1-6 Isolate Unclassified
5 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
8 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
9 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
10 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
11 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
25 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
26 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
29 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
30 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
31 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
34 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
35 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
36 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
39 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
40 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
46 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
47 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
65 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
68 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
69 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
70 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
71 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
72 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
73 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
74 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
75 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
76 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
77 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
78 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
79 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
80 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
81 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
82 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
83 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
84 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
85 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
86 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
87 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
88 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
89 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
90 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
91 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
92 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
93 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
94 3300049513 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D25_A_7_control Metagenome Rhizosphere
95 3300049519 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_B_7_drought Metagenome Rhizosphere
96 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
99 3300049651 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_A_0_drought Metagenome Rhizosphere
100 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
101 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
102 3300049681 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_B_3_drought Metagenome Rhizosphere
103 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
104 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
105 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
106 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
107 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
108 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
109 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.86
Metatranscriptomes 0.63
Isolates 2.52

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.52
Nodule 0
Rhizoplane 0.63
Rhizosphere 89.31
Stem 0
Stem Tuber 0
Unclassified 7.55

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10072692 3300003316 Bacteria 2889
2 rootH1_10002733 3300003323 Bacteria 24567
3 rootH1_10013865 3300003323 Bacteria 59066
4 rootH1_10029591 3300003323 Bacteria 4652
5 rootH1_10053697 3300003323 Bacteria 3739
6 rootH1_10114588 3300003323 Bacteria 9839
7 Ga0055531_10001953 3300003794 Bacteria 14413
8 Ga0065712_10085958 3300005290 Unclassified 2664
9 Ga0065707_10089371 3300005295 Bacteria 4388
10 Ga0070658_10033202 3300005327 Bacteria 4151
11 Ga0070677_10004995 3300005333 Unclassified 4356
12 Ga0070680_100047781 3300005336 Bacteria 3485
13 Ga0070675_100269850 3300005354 Bacteria 1493
14 Ga0070674_100006931 3300005356 Bacteria 6645
15 Ga0070673_100089008 3300005364 Bacteria 2519
16 Ga0070694_100001770 3300005444 Bacteria 12780
17 Ga0070681_10012368 3300005458 Bacteria 8463
18 Ga0068867_100057349 3300005459 Bacteria 2884
19 Ga0068853_100036979 3300005539 Bacteria 4153
20 Ga0070672_100025870 3300005543 Unclassified 4359
21 Ga0068855_100009031 3300005563 Bacteria 12044
22 Ga0068857_100010287 3300005577 Bacteria 8129
23 Ga0068857_100123092 3300005577 Bacteria 2336
24 Ga0068856_100002800 3300005614 Bacteria 17855
25 Ga0068859_100004658 3300005617 Bacteria 13971
26 Ga0068859_100013124 3300005617 Bacteria 8326
27 Ga0068859_100029785 3300005617 Bacteria 5477
28 Ga0068859_100269293 3300005617 Bacteria 1795
29 Ga0068859_100280451 3300005617 Unclassified 1759
30 Ga0068864_100176591 3300005618 Bacteria 1950
31 Ga0068851_10000066 3300005834 Bacteria 58581
32 Ga0068860_100091705 3300005843 Bacteria 2894
33 Ga0068862_100365298 3300005844 Unclassified 1342
34 Ga0081455_10103114 3300005937 Bacteria 2285
35 Ga0075429_100135423 3300006880 Bacteria 2156
36 Ga0097620_100004658 3300006931 Bacteria 13971
37 Ga0097620_100013124 3300006931 Bacteria 8326
38 Ga0097620_100029785 3300006931 Bacteria 5477
39 Ga0097620_100269283 3300006931 Bacteria 1795
40 Ga0097620_100280463 3300006931 Unclassified 1759
41 Ga0111539_10005890 3300009094 Bacteria 15836
42 Ga0111539_10020320 3300009094 Bacteria 8181
43 Ga0111539_10048150 3300009094 Bacteria 5091
44 Ga0105247_10013852 3300009101 Bacteria 4834
45 Ga0105243_10000044 3300009148 Bacteria 156661
46 Ga0105241_10002217 3300009174 Bacteria 14614
47 Ga0105242_10001275 3300009176 Bacteria 19911
48 Ga0105242_10071863 3300009176 Bacteria 2872
49 Ga0105237_10041371 3300009545 Bacteria 4648
50 Ga0105249_10009784 3300009553 Bacteria 8399
51 Ga0105249_10022904 3300009553 Bacteria 5599
52 Ga0157373_10064370 3300013100 Bacteria 2596
53 Ga0157373_10108148 3300013100 Bacteria 1955
54 Ga0157371_10000724 3300013102 Bacteria 38696
55 Ga0157371_10006009 3300013102 Bacteria 10114
56 Ga0157371_10015683 3300013102 Bacteria 5673
57 Ga0157370_10257441 3300013104 Bacteria 1613
58 Ga0157370_10278732 3300013104 Bacteria 1545
59 Ga0157369_10033253 3300013105 Bacteria 5668
60 Ga0163162_10004104 3300013306 Bacteria 13973
61 Ga0157372_10035776 3300013307 Bacteria 5468
62 Ga0163163_10096980 3300014325 Bacteria 2969
63 Ga0163163_10145814 3300014325 Unclassified 2411
64 Ga0157380_10002630 3300014326 Bacteria 12157
65 Ga0157380_10026502 3300014326 Bacteria 4401
66 Ga0209257_1000007 3300025304 Bacteria 1564415
67 Ga0207656_10005151 3300025321 Bacteria 4596
68 Ga0207710_10002500 3300025900 Bacteria 8505
69 Ga0207705_10035827 3300025909 Bacteria 3550
70 Ga0207684_10053406 3300025910 Bacteria 3430
71 Ga0207671_10023361 3300025914 Bacteria 4662
72 Ga0207652_10047894 3300025921 Bacteria 3652
73 Ga0207659_10173730 3300025926 Bacteria 1701
74 Ga0207686_10000151 3300025934 Bacteria 53049
75 Ga0207709_10000108 3300025935 Bacteria 129013
76 Ga0207691_10024400 3300025940 Bacteria 5687
77 Ga0207667_10027747 3300025949 Bacteria 6158
78 Ga0207712_10113958 3300025961 Bacteria 2033
79 Ga0207639_10022080 3300026041 Bacteria 4581
80 Ga0207648_10078107 3300026089 Bacteria 2887
81 Ga0207676_10263481 3300026095 Bacteria 1557
82 Ga0207674_10015215 3300026116 Bacteria 8465
83 Ga0207674_10186856 3300026116 Bacteria 2022
84 Ga0207428_10025826 3300027907 Bacteria 4911
85 Ga0268265_10202469 3300028380 Bacteria 1723
86 Ga0268264_10188059 3300028381 Bacteria 1880
87 Ga0307517_10004648 3300028786 Bacteria 21041
88 Ga0307515_10000001 3300028794 Bacteria 4259510
89 Ga0307515_10098470 3300028794 Bacteria 3561
90 Ga0265327_10000606 3300031251 Bacteria 59529
91 Ga0316576_10002608 3300031727 Bacteria 10303
92 Ga0307405_10051380 3300031731 Bacteria 2558
93 Ga0316577_10054161 3300031733 Bacteria 2239
94 Ga0307413_10053306 3300031824 Bacteria 2448
95 Ga0307406_10048779 3300031901 Bacteria 2676
96 Ga0307416_100000909 3300032002 Bacteria 15601
97 Ga0307416_100019750 3300032002 Bacteria 4787
98 Ga0307414_10001270 3300032004 Bacteria 13013
99 Ga0316593_10045919 3300032168 Bacteria 1465
100 Ga0316574_0046638 3300035398 Bacteria 2688
101 Ga0316582_0005982 3300036647 Bacteria 6338
102 Ga0316584_0006049 3300036712 Bacteria 8176
103 Ga0395905_0213308 3300037471 Bacteria 1808
104 Ga0400489_90141 3300039093 Bacteria 13629
105 Ga0451795_0821244 3300041456 Bacteria 3236
106 Ga0439446_0000113 3300042156 Bacteria 13956
107 Ga0451577_0000042 3300042876 Bacteria 332086
108 Ga0451577_0051057 3300042876 Bacteria 3692
109 Ga0451577_0088125 3300042876 Bacteria 2769
110 Ga0451577_0121662 3300042876 Bacteria 2338
111 Ga0451577_0263063 3300042876 Bacteria 1562
112 Ga0466969_0000340 3300044656 Bacteria 25991
113 Ga0466972_0000063 3300044658 Bacteria 105889
114 Ga0453683_0008531 3300044673 Bacteria 6873
115 Ga0453683_0017821 3300044673 Bacteria 4566
116 Ga0453683_0050045 3300044673 Bacteria 2618
117 Ga0466966_0000116 3300044684 Bacteria 49877
118 Ga0453684_0000226 3300044712 Bacteria 244912
119 Ga0453684_0000300 3300044712 Bacteria 208527
120 Ga0453684_0001161 3300044712 Bacteria 81973
121 Ga0453684_0007894 3300044712 Bacteria 19318
122 Ga0453684_0009192 3300044712 Bacteria 17369
123 Ga0453684_0014808 3300044712 Bacteria 12422
124 Ga0453684_0025397 3300044712 Bacteria 8604
125 Ga0453684_0070846 3300044712 Bacteria 4412
126 Ga0466959_0000021 3300045049 Bacteria 132387
127 Ga0451576_0000002 3300045051 Bacteria 1670975
128 Ga0451576_0000310 3300045051 Bacteria 118190
129 Ga0451576_0001086 3300045051 Bacteria 49699
130 Ga0451576_0001714 3300045051 Bacteria 36182
131 Ga0451576_0014472 3300045051 Bacteria 8778
132 Ga0451576_0052475 3300045051 Bacteria 4272
133 Ga0451576_0072626 3300045051 Bacteria 3581
134 Ga0451576_0116833 3300045051 Bacteria 2777
135 Ga0495686_0015575 3300047472 Bacteria 5185
136 Ga0495686_0022466 3300047472 Bacteria 4176
137 Ga0495686_0030724 3300047472 Bacteria 3487
138 Ga0501290_001390 3300049513 Bacteria 3338
139 Ga0501296_002882 3300049519 Bacteria 1823
140 Ga0501033_0193244 3300049570 Bacteria 1456
141 Ga0501034_0000043 3300049571 Bacteria 229049
142 Ga0501069_0036948 3300049585 Unclassified 2695
143 Ga0501201_002375 3300049651 Bacteria 1724
144 Ga0501223_000299 3300049663 Bacteria 12392
145 Ga0501243_000093 3300049675 Bacteria 9312
146 Ga0501251_003397 3300049681 Bacteria 1589
147 Ga0501257_008109 3300049686 Bacteria 2355
148 Ga0501221_000166 3300049704 Bacteria 8962
149 Ga0501225_0006079 3300049705 Bacteria 3525
150 Ga0501044_0004324 3300049823 Bacteria 15924
151 nmdc:mga08y16_105319_c1 3300050511 Bacteria 2936
152 nmdc:mga08y16_129892_c1 3300050511 Bacteria 2621
153 Ga0500642_0046547 3300053130 Bacteria 1897
154 Ga0500568_0000497 3300053139 Bacteria 28965

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037471 Ga0395905_0213308 Ga0395905_0213308_27_1457 340
2 3300042876 Ga0451577_0121662 Ga0451577_0121662_627_2024 340
3 3300044712 Ga0453684_0009192 Ga0453684_0009192_10685_12082 340
4 3300044673 Ga0453683_0008531 Ga0453683_0008531_4920_6356 353
5 3300049681 Ga0501251_003397 Ga0501251_003397_41_1111 355
6 3300042876 Ga0451577_0000042 Ga0451577_0000042_209254_210693 358
7 3300044712 Ga0453684_0001161 Ga0453684_0001161_9207_10646 358
8 3300045051 Ga0451576_0001086 Ga0451576_0001086_43950_45389 358
9 3300025910 Ga0207684_10053406 Ga0207684_100534064 360
10 3300013102 Ga0157371_10000724 Ga0157371_1000072415 377
11 3300013104 Ga0157370_10257441 Ga0157370_102574411 377
12 3300005617 Ga0068859_100280451 Ga0068859_1002804512 381
13 3300005844 Ga0068862_100365298 Ga0068862_1003652981 381
14 3300006931 Ga0097620_100280463 Ga0097620_1002804632 381
15 3300045051 Ga0451576_0014472 Ga0451576_0014472_615_2120 386
16 3300036647 Ga0316582_0005982 Ga0316582_0005982_1675_3087 388
17 3300041456 Ga0451795_0821244 Ga0451795_0821244_1502_2863 388
18 3300005459 Ga0068867_100057349 Ga0068867_1000573492 392
19 3300042156 Ga0439446_0000113 Ga0439446_0000113_10689_12065 393
20 3300042876 Ga0451577_0051057 Ga0451577_0051057_1119_2405 394
21 3300045051 Ga0451576_0116833 Ga0451576_0116833_1287_2573 394
22 3300031733 Ga0316577_10054161 Ga0316577_100541612 395
23 3300032168 Ga0316593_10045919 Ga0316593_100459191 395
24 3300013100 Ga0157373_10064370 Ga0157373_100643702 396
25 3300013102 Ga0157371_10015683 Ga0157371_100156832 396
26 3300013307 Ga0157372_10035776 Ga0157372_100357765 396
27 3300013102 Ga0157371_10006009 Ga0157371_100060093 401
28 3300005336 Ga0070680_100047781 Ga0070680_1000477813 403
29 3300013104 Ga0157370_10278732 Ga0157370_102787321 403
30 3300044712 Ga0453684_0000226 Ga0453684_0000226_198429_199712 403
31 3300005327 Ga0070658_10033202 Ga0070658_100332022 404
32 3300005458 Ga0070681_10012368 Ga0070681_100123682 404
33 3300005577 Ga0068857_100123092 Ga0068857_1001230922 404
34 3300013100 Ga0157373_10108148 Ga0157373_101081481 404
35 3300013105 Ga0157369_10033253 Ga0157369_100332534 404
36 3300025909 Ga0207705_10035827 Ga0207705_100358271 404
37 3300025921 Ga0207652_10047894 Ga0207652_100478943 404
38 3300026116 Ga0207674_10186856 Ga0207674_101868561 404
39 3300003323 rootH1_10053697 rootH1_100536974 408
40 3300039093 Ga0400489_90141 Ga0400489_90141_10947_12332 409
41 3300045051 Ga0451576_0000002 Ga0451576_0000002_112633_113895 410
42 3300053130 Ga0500642_0046547 Ga0500642_0046547_168_1445 410
43 3300003323 rootH1_10013865 rootH1_1001386526 411
44 3300005364 Ga0070673_100089008 Ga0070673_1000890082 412
45 3300028794 Ga0307515_10098470 Ga0307515_100984705 412
46 3300031251 Ga0265327_10000606 Ga0265327_100006068 412
47 3300042876 Ga0451577_0088125 Ga0451577_0088125_1467_2741 412
48 3300044712 Ga0453684_0025397 Ga0453684_0025397_7227_8501 412
49 3300003323 rootH1_10029591 rootH1_100295912 414
50 3300003794 Ga0055531_10001953 Ga0055531_100019538 414
51 3300025304 Ga0209257_1000007 Ga0209257_1000007394 414
52 3300031727 Ga0316576_10002608 Ga0316576_100026082 414
53 3300036712 Ga0316584_0006049 Ga0316584_0006049_2899_4299 414
54 3300027907 Ga0207428_10025826 Ga0207428_100258262 415
55 3300028380 Ga0268265_10202469 Ga0268265_102024691 415
56 3300005539 Ga0068853_100036979 Ga0068853_1000369792 416
57 3300009094 Ga0111539_10048150 Ga0111539_100481502 416
58 3300026041 Ga0207639_10022080 Ga0207639_100220802 416
59 3300047472 Ga0495686_0030724 Ga0495686_0030724_770_2065 416
60 3300050511 nmdc:mga08y16_105319_c1 nmdc:mga08y16_105319_c1_863_2134 416
61 3300005617 Ga0068859_100269293 Ga0068859_1002692931 417
62 3300006931 Ga0097620_100269283 Ga0097620_1002692832 417
63 3300028786 Ga0307517_10004648 Ga0307517_100046485 417
64 iso_pu_bacteria 2833640130 2833644117 417
65 3300003323 rootH1_10114588 rootH1_101145889 418
66 3300014326 Ga0157380_10026502 Ga0157380_100265022 418
67 3300049571 Ga0501034_0000043 Ga0501034_0000043_165932_167200 418
68 iso_pu_bacteria 2811994881 2812370828 418
69 iso_pu_bacteria 2923519811 2923524933 418
70 3300035398 Ga0316574_0046638 Ga0316574_0046638_999_2411 419
71 3300045051 Ga0451576_0001714 Ga0451576_0001714_7025_8296 419
72 3300032004 Ga0307414_10001270 Ga0307414_100012705 420
73 3300044712 Ga0453684_0007894 Ga0453684_0007894_10794_12071 420
74 iso_pu_bacteria 3007252601 3007253804 420
75 3300003323 rootH1_10002733 rootH1_1000273317 421
76 3300005333 Ga0070677_10004995 Ga0070677_100049953 421
77 3300005354 Ga0070675_100269850 Ga0070675_1002698501 421
78 3300005356 Ga0070674_100006931 Ga0070674_1000069312 421
79 3300005543 Ga0070672_100025870 Ga0070672_1000258702 421
80 3300025926 Ga0207659_10173730 Ga0207659_101737301 421
81 3300025940 Ga0207691_10024400 Ga0207691_100244005 421
82 3300026089 Ga0207648_10078107 Ga0207648_100781072 421
83 3300049823 Ga0501044_0004324 Ga0501044_0004324_9440_10711 421
84 3300005290 Ga0065712_10085958 Ga0065712_100859582 422
85 3300005563 Ga0068855_100009031 Ga0068855_1000090316 422
86 3300005577 Ga0068857_100010287 Ga0068857_1000102872 422
87 3300005614 Ga0068856_100002800 Ga0068856_1000028008 422
88 3300005617 Ga0068859_100004658 Ga0068859_10000465810 422
89 3300005617 Ga0068859_100029785 Ga0068859_1000297854 422
90 3300006931 Ga0097620_100004658 Ga0097620_1000046582 422
91 3300006931 Ga0097620_100029785 Ga0097620_1000297855 422
92 3300009174 Ga0105241_10002217 Ga0105241_100022177 422
93 3300009176 Ga0105242_10071863 Ga0105242_100718632 422
94 3300009545 Ga0105237_10041371 Ga0105237_100413712 422
95 3300014325 Ga0163163_10145814 Ga0163163_101458141 422
96 3300025914 Ga0207671_10023361 Ga0207671_100233614 422
97 3300025949 Ga0207667_10027747 Ga0207667_100277476 422
98 3300026116 Ga0207674_10015215 Ga0207674_1001521510 422
99 3300028794 Ga0307515_10000001 Ga0307515_10000001342 422
100 3300031901 Ga0307406_10048779 Ga0307406_100487793 422
101 3300032002 Ga0307416_100000909 Ga0307416_10000090915 422
102 3300047472 Ga0495686_0015575 Ga0495686_0015575_1400_2674 422
103 3300047472 Ga0495686_0022466 Ga0495686_0022466_117_1391 422
104 3300049570 Ga0501033_0193244 Ga0501033_0193244_54_1331 422
105 3300005444 Ga0070694_100001770 Ga0070694_1000017704 423
106 3300009094 Ga0111539_10005890 Ga0111539_100058906 423
107 3300014326 Ga0157380_10002630 Ga0157380_100026307 423
108 3300031731 Ga0307405_10051380 Ga0307405_100513802 423
109 3300031824 Ga0307413_10053306 Ga0307413_100533063 423
110 3300032002 Ga0307416_100019750 Ga0307416_1000197503 423
111 3300044712 Ga0453684_0000300 Ga0453684_0000300_113091_114368 423
112 3300045051 Ga0451576_0000310 Ga0451576_0000310_110014_111291 423
113 3300005295 Ga0065707_10089371 Ga0065707_100893713 424
114 3300005617 Ga0068859_100013124 Ga0068859_1000131245 424
115 3300005618 Ga0068864_100176591 Ga0068864_1001765912 424
116 3300005834 Ga0068851_10000066 Ga0068851_1000006642 424
117 3300005843 Ga0068860_100091705 Ga0068860_1000917053 424
118 3300005937 Ga0081455_10103114 Ga0081455_101031142 424
119 3300006880 Ga0075429_100135423 Ga0075429_1001354232 424
120 3300006931 Ga0097620_100013124 Ga0097620_1000131245 424
121 3300009094 Ga0111539_10020320 Ga0111539_100203204 424
122 3300009101 Ga0105247_10013852 Ga0105247_100138524 424
123 3300009148 Ga0105243_10000044 Ga0105243_1000004480 424
124 3300009176 Ga0105242_10001275 Ga0105242_100012753 424
125 3300009553 Ga0105249_10009784 Ga0105249_100097841 424
126 3300009553 Ga0105249_10022904 Ga0105249_100229043 424
127 3300013306 Ga0163162_10004104 Ga0163162_100041044 424
128 3300014325 Ga0163163_10096980 Ga0163163_100969802 424
129 3300025321 Ga0207656_10005151 Ga0207656_100051515 424
130 3300025900 Ga0207710_10002500 Ga0207710_100025002 424
131 3300025934 Ga0207686_10000151 Ga0207686_1000015120 424
132 3300025935 Ga0207709_10000108 Ga0207709_100001086 424
133 3300025961 Ga0207712_10113958 Ga0207712_101139581 424
134 3300026095 Ga0207676_10263481 Ga0207676_102634811 424
135 3300028381 Ga0268264_10188059 Ga0268264_101880591 424
136 3300042876 Ga0451577_0263063 Ga0451577_0263063_127_1413 424
137 3300044656 Ga0466969_0000340 Ga0466969_0000340_15525_16805 424
138 3300044658 Ga0466972_0000063 Ga0466972_0000063_99529_100812 424
139 3300044673 Ga0453683_0017821 Ga0453683_0017821_2983_4377 424
140 3300044673 Ga0453683_0050045 Ga0453683_0050045_115_1401 424
141 3300044684 Ga0466966_0000116 Ga0466966_0000116_27292_28572 424
142 3300044712 Ga0453684_0014808 Ga0453684_0014808_1268_2554 424
143 3300044712 Ga0453684_0070846 Ga0453684_0070846_2018_3301 424
144 3300045049 Ga0466959_0000021 Ga0466959_0000021_109122_110402 424
145 3300045051 Ga0451576_0052475 Ga0451576_0052475_2972_4258 424
146 3300045051 Ga0451576_0072626 Ga0451576_0072626_778_2172 424
147 3300049585 Ga0501069_0036948 Ga0501069_0036948_671_1954 424
148 3300053139 Ga0500568_0000497 Ga0500568_0000497_95_1375 424
149 3300003316 rootH1_10072692 rootH1_100726922 425
150 3300009094 Ga0111539_10005890 Ga0111539_100058907 425
151 3300049513 Ga0501290_001390 Ga0501290_001390_102_1388 425
152 3300049519 Ga0501296_002882 Ga0501296_002882_311_1597 425
153 3300049651 Ga0501201_002375 Ga0501201_002375_369_1655 425
154 3300049663 Ga0501223_000299 Ga0501223_000299_3592_4878 425
155 3300049675 Ga0501243_000093 Ga0501243_000093_5032_6318 425
156 3300049686 Ga0501257_008109 Ga0501257_008109_1035_2321 425
157 3300049704 Ga0501221_000166 Ga0501221_000166_7107_8393 425
158 3300049705 Ga0501225_0006079 Ga0501225_0006079_450_1736 425
159 3300050511 nmdc:mga08y16_129892_c1 nmdc:mga08y16_129892_c1_810_2114 425

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02080

TrkA_C

TrkA-C domain

216

284

0.96

PF03600

CitMHS

Citrate transporter

11

435

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
5uld-assembly2.cif.gz_C structure and function of the divalent anion/na+ symporter from vibrio cholerae and a humanized variant 0.6812 1 423
7jsj-assembly1.cif.gz_A structure of the nact-pf2 complex 0.6782 2 416
5uld-assembly2.cif.gz_C structure and function of the divalent anion/na+ symporter from vibrio cholerae and a humanized variant 0.677 1 423
4f35-assembly2.cif.gz_A crystal structure of a bacterial dicarboxylate/sodium symporter 0.6755 2 424
6okz-assembly2.cif.gz_A structure of vcindy bound to fumarate 0.6723 2 424
ID Description Score Start End Superfamily
af_I6YCG9_3_406_1.20.1530.20 Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; 0.7738 3 418 1.20.1530.20
af_I6YCG9_3_406_1.20.1530.20 Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; 0.767 3 418 1.20.1530.20
af_Q5Z975_37_279_1.20.1420.10 Mainly Alpha;Up-down Bundle;A middle domain of Talin 1;Talin, central domain 0.2729 9 304 1.20.1420.10
af_Q5Z975_37_279_1.20.1420.10 Mainly Alpha;Up-down Bundle;A middle domain of Talin 1;Talin, central domain 0.2684 9 304 1.20.1420.10
af_O44196_80_262_1.10.357.20 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;SLC41 divalent cation transporters, integral membrane domain 0.2546 8 296 1.10.357.20
ID Description Score Start End GO Terms
AF-A0A841EKU3-F1-model_v4 NhaD family Na+/H+ antiporter 0.9808 1 425 GO:0006814
GO:0015297
GO:0016020
AF-A0A841EKU3-F1-model_v4 NhaD family Na+/H+ antiporter 0.9785 1 425 GO:0006814
GO:0015297
GO:0016020
AF-A0A7Y4T3P6-F1-model_v4 Sodium:proton antiporter NhaD 0.974 1 419 GO:0006814
GO:0015297
GO:0016020
AF-A0A2J0LDN4-F1-model_v4 Sodium:proton antiporter 0.9734 73 419 GO:0006814
GO:0015297
GO:0016020
AF-A0A7Y4XLM7-F1-model_v4 Sodium:proton antiporter NhaD 0.9708 1 420 GO:0006814
GO:0015297
GO:0016020

Feature Viewer

pLDDT pTM Quality
85.78 0.85 High
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Predicted Structure (AlphaFold2)

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