F230364

General Info

Members Datasets Scaffolds Average Seq Length
158 137 316 1184

Family's Representative Sequence

Representative Sequence 3300045976|Ga0466967_0014847|Ga0466967_0014847_958_4614
Length 1218
Sequence MSPVGVTGLADLVLQEPTLARAVADARAGVSPTLDLTGSNALRPFVVKGLADAGRTVLAVAATAREAELLVTALEGVLDPSLVAYFPSWETLPHERLSPRSDTVGRRLAVLRRLRHPGPDPVTGPLRVVVAPVRSVLQPQVRGLADLEPVELAVGAEAELEDVARRLAAAAYTRVDLVEKRGEFAVRGGIVDVFPPTEEHPLRVEFWGDEVEEIRSFAVADQRTLAAADRLWAPPCRELLLTDEVRARARELGQRHPELAEITEKLADGHAVEGMESLAPVLTDDMELLVDLLPEQTHVLVLDPERARSRAHDLVATSQEFLEASWAAAAGGGRAPIDLGAASYHSLADVRSRCLRQGKAWWSMSPFGLDPEAAGLEGLDRAAGQVRDMLGEPVDSGVDAEAGAVESWTLPARPVETYRGDVPRAVEDIRSWLRNDSRVVLLHEGHGPAQRMVEVLREHDVPVRWSESIDSEPERGLVHVSTATLEHGFVDEALCLAVVTGDDLTGQRASTKDMRSMPTRRKRQIDPLELKPGDYVVHEQHGVGRYVEMRQREVQGATREYLVLEYGASKRGGPPDRLYVPTDALDQVTRYVGGEQPTLDRLGGADWARRKGRARKAVRQIAAELIKLYAARRATRGHAFGPDTPWQRELEDAFPFQETPDQLTTVEEVKHDMEQQVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLVQQHFSTFSERMAGFPVVVKGLSRFQTEKEAAQVVEELADGRVDIVIGTHRLLNPDVRVKNLGLIIVDEEQRFGVEHKEQMKRLRTSVDVLSMSATPIPRTLEMAITGIREMSTITTPPEERHPVLTYVGAYEDRQVIAAIRRELLREGQVFYIHNRVQSIEKAAARIKQLVPEARVATAHGQMGEHALEQVMLDFWEKRFDVLVCTTIVESGLDVSNANTMVIERADTLGLSQLHQLRGRVGRSRERAYAYFLYPPDKPLTETAHERLATLAQHSDLGGGMAIAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVAEFRGDGAGEQPEMKIELPVDAHLPHDYVPSERLRLEMYKRLAEVRGDEDVALIREELLDRYGEPPAPVQSLLQVARFRGRARQAGLTDVTLQGKYVRFAPVDLPESAALRLNRLYPRSILKPGVRTMLVPRPSTAAVGGRPLRDEELLSWAREVVDTVVDRSPDGAKGREVPTAAHA

Samples

Sample ID Description Type Environment
1 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
6 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
9 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
10 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
11 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
12 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
13 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
14 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
15 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
16 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
17 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
22 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
23 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
25 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
28 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
29 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
30 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
43 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
47 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
48 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
49 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
50 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
51 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
52 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
53 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
54 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
55 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
56 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
57 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
58 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
59 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
60 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
61 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
62 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
63 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
64 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
65 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
66 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
67 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
68 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
69 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
70 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
71 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
72 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
73 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
74 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
75 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
76 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
77 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
78 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
88 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
89 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
90 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
91 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
92 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
93 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
94 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
95 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
96 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
98 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
99 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
100 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
101 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
102 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
103 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
104 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
105 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
106 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
107 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
108 2508501039 Frankia saprophytica CN3 Isolate Nodule
109 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
110 2517572101 Frankia sp. DC12 Isolate Nodule
111 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
112 2643221561 Nocardioides sp. Root151 Isolate Unclassified
113 2643221576 Nocardioides sp. Root614 Isolate Unclassified
114 2643221590 Nocardioides sp. Root682 Isolate Unclassified
115 2643221604 Nocardioides sp. Root190 Isolate Unclassified
116 2643221615 Nocardioides sp. Root224 Isolate Unclassified
117 2643221617 Nocardioides sp. Root79 Isolate Unclassified
118 2643221620 Nocardioides sp. Root240 Isolate Unclassified
119 2643221641 Nocardioides sp. Root122 Isolate Unclassified
120 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
121 2643221696 Nocardioides sp. Root140 Isolate Unclassified
122 2675902999 Frankia asymbiotica NRRL B-16386 Isolate Nodule
123 2675903058 Actinopolymorpha cephalotaxi CPCC 202808 Isolate Rhizosphere
124 2738541305 Nocardioides sp. CF167 Isolate Unclassified
125 2739367898 Nocardioides sp. CF479 Isolate Unclassified
126 2773857921 Frankia asymbiotica NRRL B-16386 Isolate Nodule
127 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
128 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
129 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
130 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
131 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
132 2894510363 Methylomonas sp. Kb3 Isolate Unclassified
133 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
134 2989392574 Methylomonas rhizoryzae GJ1 Isolate Unclassified
135 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
136 8002784119 Frankia sp. AgB1.9 Isolate Nodule
137 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 80.38
Metatranscriptomes 0.63
Isolates 18.99

Biome Distribution

Category Percentage (%)
Aerial Root 1.27
Bulb 0
Endosphere 5.06
Nodule 3.8
Rhizoplane 5.7
Rhizosphere 67.72
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466967_0014847 3300045976 Bacteria 6086
2 Ga0070658_10000294 3300005327 Bacteria 43582
3 Ga0070658_10018706 3300005327 Bacteria 5550
4 Ga0070680_100001726 3300005336 Bacteria 16048
5 Ga0068868_100012056 3300005338 Bacteria 6312
6 Ga0070659_100001340 3300005366 Bacteria 17722
7 Ga0070681_10003785 3300005458 Bacteria 14216
8 Ga0070681_10010548 3300005458 Bacteria 9124
9 Ga0070679_100000128 3300005530 Bacteria 60863
10 Ga0070679_100011475 3300005530 Bacteria 8442
11 Ga0070684_100003666 3300005535 Bacteria 11589
12 Ga0070665_100001130 3300005548 Bacteria 32810
13 Ga0068859_100006222 3300005617 Bacteria 12118
14 Ga0068863_100002062 3300005841 Bacteria 19919
15 Ga0068860_100000300 3300005843 Bacteria 68717
16 Ga0068862_100000607 3300005844 Bacteria 37253
17 Ga0081538_10000019 3300005981 Bacteria 141612
18 Ga0075365_10000202 3300006038 Bacteria 19802
19 Ga0075368_10000348 3300006042 Bacteria 13553
20 Ga0075367_10001149 3300006178 Bacteria 11037
21 Ga0075428_100006339 3300006844 Bacteria 13161
22 Ga0075430_100012424 3300006846 Bacteria 7245
23 Ga0075431_100000069 3300006847 Bacteria 59736
24 Ga0075431_100000850 3300006847 Bacteria 26783
25 Ga0075429_100000652 3300006880 Bacteria 26855
26 Ga0097620_100006222 3300006931 Bacteria 12118
27 Ga0111539_10003503 3300009094 Bacteria 20695
28 Ga0105245_10001197 3300009098 Bacteria 23470
29 Ga0105248_10000076 3300009177 Bacteria 114070
30 Ga0105239_10001341 3300010375 Bacteria 33185
31 Ga0105246_10001074 3300011119 Bacteria 15790
32 Ga0163162_10000609 3300013306 Bacteria 33218
33 Ga0206353_10801861 3300020082 Bacteria 6859
34 Ga0207645_10008932 3300025907 Bacteria 6959
35 Ga0207705_10000417 3300025909 Bacteria 37398
36 Ga0207707_10000199 3300025912 Bacteria 63720
37 Ga0207707_10041169 3300025912 Bacteria 4035
38 Ga0207660_10001441 3300025917 Bacteria 15957
39 Ga0207662_10010370 3300025918 Bacteria 5144
40 Ga0207652_10000199 3300025921 Bacteria 63364
41 Ga0207652_10008688 3300025921 Bacteria 8179
42 Ga0207687_10000975 3300025927 Bacteria 19466
43 Ga0207690_10003025 3300025932 Bacteria 10120
44 Ga0207711_10000056 3300025941 Bacteria 135485
45 Ga0207689_10015026 3300025942 Bacteria 6565
46 Ga0207677_10006812 3300026023 Bacteria 6275
47 Ga0207641_10028614 3300026088 Bacteria 4605
48 Ga0207428_10002242 3300027907 Bacteria 19415
49 Ga0268266_10000339 3300028379 Bacteria 73355
50 Ga0268265_10000015 3300028380 Bacteria 322854
51 Ga0268264_10000859 3300028381 Bacteria 32246
52 Ga0307513_10026590 3300031456 Bacteria 6667
53 Ga0307408_100000788 3300031548 Bacteria 25461
54 Ga0307410_10000723 3300031852 Bacteria 13800
55 Ga0307406_10000617 3300031901 Bacteria 20308
56 Ga0307407_10002723 3300031903 Bacteria 7021
57 Ga0307409_100000008 3300031995 Bacteria 71624
58 Ga0307416_100000067 3300032002 Bacteria 86975
59 Ga0307414_10021199 3300032004 Bacteria 4071
60 Ga0307415_100000692 3300032126 Bacteria 14983
61 Ga0316574_0000382 3300035398 Bacteria 17262
62 Ga0395900_0036669 3300037418 Bacteria 5055
63 Ga0395898_0036640 3300037466 Bacteria 4870
64 Ga0395901_0016185 3300038443 Bacteria 7597
65 Ga0451577_0000122 3300042876 Bacteria 171004
66 Ga0451577_0001715 3300042876 Bacteria 28262
67 Ga0451577_0003864 3300042876 Bacteria 16269
68 Ga0453683_0009169 3300044673 Bacteria 6609
69 Ga0453684_0000434 3300044712 Bacteria 170295
70 Ga0453684_0021286 3300044712 Bacteria 9701
71 Ga0453684_0021420 3300044712 Bacteria 9657
72 Ga0466970_0002937 3300044765 Bacteria 8257
73 Ga0466970_0009053 3300044765 Bacteria 5025
74 Ga0466957_0004589 3300044842 Bacteria 7718
75 Ga0466957_0009645 3300044842 Bacteria 5512
76 Ga0451576_0018719 3300045051 Bacteria 7576
77 Ga0451576_0019890 3300045051 Bacteria 7322
78 Ga0466958_0005446 3300045836 Bacteria 6853
79 Ga0466967_0008329 3300045976 Bacteria 7585
80 Ga0466967_0039409 3300045976 Bacteria 4062
81 Ga0496101_0013900 3300048904 Bacteria 5404
82 Ga0496102_0004491 3300048905 Bacteria 11777
83 Ga0496103_0012265 3300048906 Bacteria 5086
84 Ga0496105_0001864 3300048908 Bacteria 15119
85 Ga0496109_0012551 3300048912 Bacteria 7314
86 Ga0496111_0000445 3300048914 Bacteria 21022
87 Ga0496114_0006140 3300048917 Bacteria 9452
88 Ga0496115_0001070 3300048918 Bacteria 19818
89 Ga0496115_0037873 3300048918 Bacteria 3824
90 Ga0496116_0000134 3300048919 Bacteria 153331
91 Ga0496117_0001944 3300048920 Bacteria 27585
92 Ga0496118_0003876 3300048921 Bacteria 18377
93 Ga0496118_0021513 3300048921 Bacteria 5672
94 Ga0496119_0003149 3300048922 Bacteria 17339
95 Ga0501031_0005683 3300049568 Bacteria 8126
96 Ga0501036_0023282 3300049572 Bacteria 5216
97 Ga0501038_0005278 3300049574 Bacteria 12017
98 Ga0501039_0009040 3300049575 Bacteria 7590
99 Ga0501041_0004664 3300049577 Bacteria 7953
100 Ga0501041_0012362 3300049577 Bacteria 5057
101 Ga0501043_0010737 3300049579 Bacteria 7172
102 Ga0501046_0012676 3300049580 Bacteria 7168
103 Ga0501046_0013010 3300049580 Bacteria 7062
104 Ga0501047_0042824 3300049581 Bacteria 4373
105 Ga0501048_0000455 3300049582 Bacteria 28628
106 Ga0501070_0001348 3300049586 Bacteria 21972
107 Ga0501071_0001943 3300049587 Bacteria 12326
108 Ga0501072_0001063 3300049588 Bacteria 20339
109 Ga0501074_0008327 3300049590 Bacteria 7520
110 Ga0501074_0008845 3300049590 Bacteria 7298
111 Ga0501075_0019608 3300049591 Bacteria 4909
112 Ga0501076_0010424 3300049592 Bacteria 6899
113 Ga0501077_0018161 3300049593 Bacteria 4447
114 Ga0501080_0001501 3300049742 Bacteria 19691
115 Ga0501080_0019708 3300049742 Bacteria 6247
116 Ga0501083_0007333 3300049744 Bacteria 7821
117 Ga0501035_0024009 3300049822 Bacteria 5595
118 Ga0501045_0015267 3300049824 Bacteria 5451
119 nmdc:mga0yw44_8079_c1 3300050492 Bacteria 5222
120 nmdc:mga05p37_405_c1 3300050507 Bacteria 46764
121 nmdc:mga09592_260_c1 3300050508 Bacteria 38526
122 nmdc:mga0qj67_5969_c1 3300050509 Bacteria 8921
123 nmdc:mga06r32_332_c1 3300050510 Bacteria 39263
124 Ga0500644_0000446 3300053088 Bacteria 18927
125 Ga0500556_0001569 3300053104 Bacteria 9259
126 Ga0500593_002137 3300053117 Bacteria 7182
127 Ga0500637_0016333 3300053178 Bacteria 3955
128 Ga0530510_0006032 3300061734 Bacteria 8411
129 2508672249 2508501039 Bacteria 9978592
130 2515854669 2515154155 Bacteria 7985436
131 2517760790 2517572101 Bacteria 6884336
132 2558913378 2558860112 Bacteria 9931328
133 2643827740 2643221561 Bacteria 4984412
134 2643889956 2643221576 Bacteria 5214352
135 2643959012 2643221590 Bacteria 5214697
136 2644033831 2643221604 Bacteria 5014917
137 2644091238 2643221615 Bacteria 5487866
138 2644102796 2643221617 Bacteria 5139111
139 2644118458 2643221620 Bacteria 5134593
140 2644230934 2643221641 Bacteria 4490190
141 2644321041 2643221657 Bacteria 5490246
142 2644534993 2643221696 Bacteria 5431823
143 2676198359 2675902999 Bacteria 9438463
144 2676474101 2675903058 Bacteria 6822861
145 2738870488 2738541305 Bacteria 4910150
146 2740166255 2739367898 Bacteria 4367674
147 2774842937 2773857921 Bacteria 9435764
148 2812331634 2811994874 Bacteria 5367947
149 2816509489 2816332139 Bacteria 9138787
150 2855389488 2855386786 Bacteria 4752232
151 2857486058 2857481737 Bacteria 4761446
152 2870791124 2870782633 Bacteria 9624083
153 2894513407 2894510363 Bacteria 5121143
154 2984579690 2984576629 Bacteria 4248407
155 2989396132 2989392574 Bacteria 4554005
156 2990257297 2990256926 Bacteria 4252839
157 8002792103 8002784119 Bacteria 9788632
158 8054610126 8054609563 Bacteria 5170090
159 Ga0466967_0014847
160 Ga0070658_10000294
161 Ga0070658_10018706
162 Ga0070680_100001726
163 Ga0068868_100012056
164 Ga0070659_100001340
165 Ga0070681_10003785
166 Ga0070681_10010548
167 Ga0070679_100000128
168 Ga0070679_100011475
169 Ga0070684_100003666
170 Ga0070665_100001130
171 Ga0068859_100006222
172 Ga0068863_100002062
173 Ga0068860_100000300
174 Ga0068862_100000607
175 Ga0081538_10000019
176 Ga0075365_10000202
177 Ga0075368_10000348
178 Ga0075367_10001149
179 Ga0075428_100006339
180 Ga0075430_100012424
181 Ga0075431_100000069
182 Ga0075431_100000850
183 Ga0075429_100000652
184 Ga0097620_100006222
185 Ga0111539_10003503
186 Ga0105245_10001197
187 Ga0105248_10000076
188 Ga0105239_10001341
189 Ga0105246_10001074
190 Ga0163162_10000609
191 Ga0206353_10801861
192 Ga0207645_10008932
193 Ga0207705_10000417
194 Ga0207707_10000199
195 Ga0207707_10041169
196 Ga0207660_10001441
197 Ga0207662_10010370
198 Ga0207652_10000199
199 Ga0207652_10008688
200 Ga0207687_10000975
201 Ga0207690_10003025
202 Ga0207711_10000056
203 Ga0207689_10015026
204 Ga0207677_10006812
205 Ga0207641_10028614
206 Ga0207428_10002242
207 Ga0268266_10000339
208 Ga0268265_10000015
209 Ga0268264_10000859
210 Ga0307513_10026590
211 Ga0307408_100000788
212 Ga0307410_10000723
213 Ga0307406_10000617
214 Ga0307407_10002723
215 Ga0307409_100000008
216 Ga0307416_100000067
217 Ga0307414_10021199
218 Ga0307415_100000692
219 Ga0316574_0000382
220 Ga0395900_0036669
221 Ga0395898_0036640
222 Ga0395901_0016185
223 Ga0451577_0000122
224 Ga0451577_0001715
225 Ga0451577_0003864
226 Ga0453683_0009169
227 Ga0453684_0000434
228 Ga0453684_0021286
229 Ga0453684_0021420
230 Ga0466970_0002937
231 Ga0466970_0009053
232 Ga0466957_0004589
233 Ga0466957_0009645
234 Ga0451576_0018719
235 Ga0451576_0019890
236 Ga0466958_0005446
237 Ga0466967_0008329
238 Ga0466967_0039409
239 Ga0496101_0013900
240 Ga0496102_0004491
241 Ga0496103_0012265
242 Ga0496105_0001864
243 Ga0496109_0012551
244 Ga0496111_0000445
245 Ga0496114_0006140
246 Ga0496115_0001070
247 Ga0496115_0037873
248 Ga0496116_0000134
249 Ga0496117_0001944
250 Ga0496118_0003876
251 Ga0496118_0021513
252 Ga0496119_0003149
253 Ga0501031_0005683
254 Ga0501036_0023282
255 Ga0501038_0005278
256 Ga0501039_0009040
257 Ga0501041_0004664
258 Ga0501041_0012362
259 Ga0501043_0010737
260 Ga0501046_0012676
261 Ga0501046_0013010
262 Ga0501047_0042824
263 Ga0501048_0000455
264 Ga0501070_0001348
265 Ga0501071_0001943
266 Ga0501072_0001063
267 Ga0501074_0008327
268 Ga0501074_0008845
269 Ga0501075_0019608
270 Ga0501076_0010424
271 Ga0501077_0018161
272 Ga0501080_0001501
273 Ga0501080_0019708
274 Ga0501083_0007333
275 Ga0501035_0024009
276 Ga0501045_0015267
277 nmdc:mga0yw44_8079_c1
278 nmdc:mga05p37_405_c1
279 nmdc:mga09592_260_c1
280 nmdc:mga0qj67_5969_c1
281 nmdc:mga06r32_332_c1
282 Ga0500644_0000446
283 Ga0500556_0001569
284 Ga0500593_002137
285 Ga0500637_0016333
286 Ga0530510_0006032
287 2508672249
288 2515854669
289 2517760790
290 2558913378
291 2643827740
292 2643889956
293 2643959012
294 2644033831
295 2644091238
296 2644102796
297 2644118458
298 2644230934
299 2644321041
300 2644534993
301 2676198359
302 2676474101
303 2738870488
304 2740166255
305 2774842937
306 2812331634
307 2816509489
308 2855389488
309 2857486058
310 2870791124
311 2894513407
312 2984579690
313 2989396132
314 2990257297
315 8002792103
316 8054610126

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02559

CarD_TRCF_RID

CarD-like/TRCF RID domain

530

592

0.96

PF03461

TRCF

TRCF domain

1058

1149

0.96

PF17757

UvrB_inter

UvrB interaction domain

150

238

0.94

PF00271

Helicase_C

Helicase conserved C-terminal domain

854

964

0.88

PF00270

DEAD

DEAD/DEAH box helicase

659

823

0.8

PF04851

ResIII

Type III restriction enzyme, res subunit

656

817

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
4dfc-assembly2.cif.gz_C core uvra/trcf complex 0.9784 148 225
4dfc-assembly2.cif.gz_C core uvra/trcf complex 0.9544 148 225
4dfc-assembly1.cif.gz_A core uvra/trcf complex 0.9469 148 231
4dfc-assembly1.cif.gz_A core uvra/trcf complex 0.9257 148 231
3fpn-assembly3.cif.gz_B crystal structure of uvra-uvrb interaction domains 0.8907 145 237
ID Description Score Start End Superfamily
af_P9WMQ5_1055_1170_3.90.1150.50 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Transcription-repair-coupling factor, D7 domain 0.9615 1020 1133 3.90.1150.50
4dfcA00 Alpha Beta;2-Layer Sandwich;Penicillin-binding protein 1b fold;Penicillin-binding protein 1b domain 0.9469 148 231 3.30.2060.10
af_P9WMQ5_1055_1170_3.90.1150.50 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Transcription-repair-coupling factor, D7 domain 0.9377 1020 1133 3.90.1150.50
af_A0A1D6HHW2_464_714_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9302 611 798 3.40.50.300
4dfcA00 Alpha Beta;2-Layer Sandwich;Penicillin-binding protein 1b fold;Penicillin-binding protein 1b domain 0.9257 148 231 3.30.2060.10
ID Description Score Start End GO Terms
AF-J4SJG1-F1-model_v4 deleted 0.9976 636 744
AF-A0A2J0QT10-F1-model_v4 deleted 0.9941 602 783
AF-W1YQ35-F1-model_v4 Transcription-repair coupling factor 0.9941 597 702 GO:0003677
GO:0003678
GO:0005524
GO:0006281
GO:0016787
AF-A0A7X5WD56-F1-model_v4 deleted 0.9837 679 805
AF-A0A2J0QT10-F1-model_v4 deleted 0.9834 602 783

Map