F156835

General Info

Members Datasets Scaffolds Average Seq Length
133 108 133 563

Family's Representative Sequence

Representative Sequence 3300031090|Ga0265760_10012705|Ga0265760_100127052
Length 604
Sequence MQGSSLFHAVIQVSKCSHVLFIIVVDFTQQICHGVVMHVDTVPNRTSRPTYLLRESYREGKKVHKRTLANLSSLSDEQIESIRAVLSGQSMRPVEQLWQTIRSRPHGAVQAVRVAMQRLGFESLLASRPSAERDVVCAMVAARILSPHTKLATTRWWHTTTLPEEFGVSEADENDLYAAMDWLLERQPAIEKKLAARHLHEGGLALYDLSSSYFEGHCCPLGKIGYSRDGKRNTLQVNYGLLTNRAGCPVAISVYEGNTADASTLSDQVQKLRENFGLQRLVLVGDRGMISHKAIDGLRLLVGLDWITALKSSQIRALAQGGALQLGLFDERNLFEFAHPDYPGERLMACRNADLGCLRAHKREALLVATERELEKIRIRVENGTLHGQDKIGVRVGAVVNKYKVAKLIALTIEDGHFAFHRLTEQIAAEAALDGIYIIRTSVPQNQMDSAEAVRSYKALAEVERAFRSMKTLDLHIRPIHHWLETRVRAHILLCMLAYYVEWHMREAWRPLLFADEDLKAKTQRDPVAPAKRSVAALRKAVTHTLDDGSPAHSFGTLLQELSTIVRNTCQPPLGATAALTFQMTTMSNPTQLRAIQMLQAISV

Samples

Sample ID Description Type Environment
1 3300000546 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
7 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
8 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
9 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
10 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
11 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
12 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
13 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
14 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
15 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
16 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
17 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
18 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
19 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
20 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
21 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
22 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
23 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
29 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
30 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
31 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
32 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
33 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
34 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
35 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
36 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
37 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
38 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
39 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
40 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
41 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
42 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
43 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
44 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
45 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
46 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
47 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
48 3300033545 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4 Metagenome Unclassified
49 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
50 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
51 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
52 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
53 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
54 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
55 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
56 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
57 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
58 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
59 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
60 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
61 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
62 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
63 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
64 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
65 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
66 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
67 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
68 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
69 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
70 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
71 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
72 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
73 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
74 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
75 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
76 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
77 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
78 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
79 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
80 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
81 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
82 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
83 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
84 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
85 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
86 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
87 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
88 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
89 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
96 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
97 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
98 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
99 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
100 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
101 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
102 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
103 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
104 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
105 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
106 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
107 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
108 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.49
Metatranscriptomes 4.51
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.01
Nodule 0
Rhizoplane 6.77
Rhizosphere 78.2
Stem 0
Stem Tuber 0
Unclassified 12.03

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 LJNas_1002590 3300000546 Bacteria 2157
2 rootH2_10125587 3300003320 Bacteria 2244
3 rootL2_10283023 3300003322 Bacteria 2233
4 rootH1_10181757 3300003323 Bacteria 3026
5 Ga0065712_10103880 3300005290 Bacteria 1974
6 Ga0070699_100063763 3300005518 Bacteria 3196
7 Ga0070665_100139855 3300005548 Bacteria 2424
8 Ga0070704_100021394 3300005549 Bacteria 4193
9 Ga0070704_100133094 3300005549 Bacteria 1930
10 Ga0068857_100063942 3300005577 Bacteria 3271
11 Ga0068860_100124055 3300005843 Bacteria 2475
12 Ga0081538_10027037 3300005981 Bacteria 3989
13 Ga0075428_100238494 3300006844 Bacteria 1962
14 Ga0075435_100146395 3300007076 Bacteria 1984
15 Ga0099795_10007971 3300007788 Bacteria 2991
16 Ga0105247_10072392 3300009101 Bacteria 2157
17 Ga0114129_10185653 3300009147 Bacteria 2826
18 Ga0114129_10204822 3300009147 Unclassified 2670
19 Ga0105237_10169602 3300009545 Bacteria 2182
20 Ga0157375_10224517 3300013308 Bacteria 2037
21 Ga0213872_10021983 3300021361 Bacteria 2937
22 Ga0213876_10055563 3300021384 Bacteria 2090
23 Ga0213876_10061137 3300021384 Bacteria 1987
24 Ga0213871_10007902 3300021441 Bacteria 2321
25 Ga0224572_1007212 3300024225 Bacteria 2031
26 Ga0207710_10042322 3300025900 Bacteria 2023
27 Ga0207648_10119643 3300026089 Bacteria 2315
28 Ga0209179_1001323 3300027512 Bacteria 2995
29 Ga0209588_1020043 3300027671 Bacteria 2092
30 Ga0268264_10083056 3300028381 Bacteria 2743
31 Ga0265323_10029583 3300028653 Bacteria 2048
32 Ga0307515_10174912 3300028794 Bacteria 2122
33 Ga0307511_10000105 3300030521 Bacteria 75047
34 Ga0265760_10012705 3300031090 Unclassified 2409
35 Ga0265760_10016592 3300031090 Bacteria 2113
36 Ga0265328_10030847 3300031239 Bacteria 1995
37 Ga0265316_10104615 3300031344 Bacteria 2148
38 Ga0307509_10174127 3300031507 Bacteria 2026
39 Ga0316575_10020379 3300031665 Bacteria 2544
40 Ga0316575_10033481 3300031665 Bacteria 2015
41 Ga0316579_10037052 3300031691 Bacteria 2251
42 Ga0316579_10038536 3300031691 Bacteria 2210
43 Ga0316579_10045115 3300031691 Bacteria 2054
44 Ga0316576_10097801 3300031727 Bacteria 2191
45 Ga0316576_10120895 3300031727 Bacteria 1966
46 Ga0316578_10070880 3300031728 Bacteria 2063
47 Ga0316578_10071646 3300031728 Bacteria 2052
48 Ga0316578_10080201 3300031728 Bacteria 1941
49 Ga0307516_10155407 3300031730 Bacteria 2043
50 Ga0316577_10051754 3300031733 Bacteria 2291
51 Ga0316577_10052962 3300031733 Bacteria 2264
52 Ga0316577_10064610 3300031733 Bacteria 2042
53 Ga0316583_10025437 3300032133 Bacteria 2114
54 Ga0316585_10020379 3300032137 Bacteria 2029
55 Ga0316580_10012321 3300032139 Bacteria 2604
56 Ga0316593_10001413 3300032168 Bacteria 5276
57 Ga0316592_1004809 3300033524 Bacteria 2530
58 Ga0316586_1004028 3300033527 Bacteria 1974
59 Ga0316587_1003303 3300033529 Bacteria 2248
60 Ga0316214_1003195 3300033545 Bacteria 2058
61 Ga0373936_0009715 3300035113 Bacteria 3628
62 Ga0373946_0040537 3300035171 Bacteria 1906
63 Ga0316574_0036125 3300035398 Unclassified 3024
64 Ga0316574_0085349 3300035398 Bacteria 2008
65 Ga0316582_0070694 3300036647 Bacteria 2258
66 Ga0316582_0076682 3300036647 Bacteria 2174
67 Ga0316582_0077425 3300036647 Unclassified 2164
68 Ga0316584_0093386 3300036712 Unclassified 2253
69 Ga0316584_0118164 3300036712 Bacteria 1982
70 Ga0395900_0191764 3300037418 Bacteria 2072
71 Ga0316581_0018448 3300037588 Bacteria 2026
72 Ga0395901_0145651 3300038443 Bacteria 2489
73 Ga0395901_0191294 3300038443 Bacteria 2146
74 Ga0400490_08643 3300038726 Bacteria 1957
75 Ga0400485_19445 3300038735 Unclassified 2399
76 Ga0400487_03455 3300039110 Unclassified 2435
77 Ga0436365_1440830 3300039437 Bacteria 2112
78 Ga0436365_1821638 3300039437 Bacteria 2510
79 Ga0436360_0772953 3300039438 Unclassified 2634
80 Ga0436361_0042265 3300039447 Bacteria 2209
81 Ga0436361_0990700 3300039447 Bacteria 2814
82 Ga0466969_0027203 3300044656 Bacteria 2929
83 Ga0466966_0086768 3300044684 Bacteria 1945
84 Ga0466961_0058324 3300044693 Bacteria 2456
85 Ga0466959_0122553 3300045049 Bacteria 1847
86 Ga0466958_0072677 3300045836 Unclassified 2106
87 Ga0495594_0044659 3300046499 Bacteria 2431
88 Ga0495606_0080053 3300046507 Bacteria 2033
89 Ga0495608_0103906 3300046511 Bacteria 1830
90 Ga0495642_0031963 3300046528 Bacteria 2110
91 Ga0495645_0056237 3300046543 Bacteria 2857
92 Ga0495634_0058808 3300046642 Bacteria 2561
93 Ga0495657_0095667 3300046675 Bacteria 1898
94 Ga0495672_0006149 3300047320 Bacteria 9366
95 Ga0495672_0072083 3300047320 Bacteria 1952
96 Ga0495680_0091719 3300047322 Bacteria 2277
97 Ga0495685_030167 3300047447 Bacteria 1865
98 Ga0495681_0042551 3300047470 Bacteria 2197
99 Ga0496101_0095452 3300048904 Bacteria 2218
100 Ga0496104_0094473 3300048907 Bacteria 2861
101 Ga0496105_0115837 3300048908 Bacteria 2210
102 Ga0496106_0107339 3300048909 Bacteria 2171
103 Ga0496107_0100990 3300048910 Bacteria 2115
104 Ga0496108_0068222 3300048911 Bacteria 3000
105 Ga0496109_0153392 3300048912 Bacteria 2157
106 Ga0496114_0065712 3300048917 Bacteria 3039
107 Ga0496115_0167919 3300048918 Bacteria 1814
108 Ga0496126_0139368 3300048929 Bacteria 2089
109 Ga0501036_0092651 3300049572 Bacteria 2553
110 Ga0501038_0109465 3300049574 Bacteria 2289
111 Ga0501039_0107217 3300049575 Bacteria 2182
112 Ga0501040_0002262 3300049576 Bacteria 12363
113 Ga0501042_0083129 3300049578 Bacteria 2295
114 Ga0501048_0092278 3300049582 Bacteria 2135
115 Ga0501048_0095036 3300049582 Bacteria 2102
116 Ga0501072_0107205 3300049588 Bacteria 2222
117 Ga0501081_0059947 3300049743 Bacteria 2635
118 nmdc:mga05p37_194063_c1 3300050507 Bacteria 2464
119 nmdc:mga05p37_258919_c1 3300050507 Unclassified 2083
120 Ga0495655_0002791 3300053083 Bacteria 2809
121 Ga0495655_0004710 3300053083 Unclassified 2356
122 Ga0495655_0005095 3300053083 Bacteria 2298
123 Ga0500595_025801 3300053119 Bacteria 2032
124 Ga0500614_009940 3300053123 Bacteria 2035
125 Ga0500616_0001481 3300053153 Bacteria 22313
126 Ga0500639_051460 3300053163 Bacteria 2144
127 Ga0501084_0053000 3300054114 Bacteria 3393
128 Ga0590071_002047 3300059421 Bacteria 5158
129 Ga0590075_011709 3300059424 Bacteria 2123
130 Ga0590077_010320 3300059426 Bacteria 1920
131 Ga0501082_0157773 3300060353 Bacteria 1971
132 Ga0530510_0053516 3300061734 Bacteria 2917
133 Ga0530510_0063050 3300061734 Bacteria 2683

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300007076 Ga0075435_100146395 Ga0075435_1001463952 489
2 3300048918 Ga0496115_0167919 Ga0496115_0167919_257_1756 499
3 3300024225 Ga0224572_1007212 Ga0224572_10072121 503
4 3300031691 Ga0316579_10038536 Ga0316579_100385361 510
5 3300031733 Ga0316577_10064610 Ga0316577_100646101 510
6 3300046511 Ga0495608_0103906 Ga0495608_0103906_45_1679 524
7 3300037418 Ga0395900_0191764 Ga0395900_0191764_115_1845 529
8 3300038443 Ga0395901_0145651 Ga0395901_0145651_637_2367 529
9 3300047470 Ga0495681_0042551 Ga0495681_0042551_221_1885 530
10 3300031090 Ga0265760_10016592 Ga0265760_100165921 537
11 3300039447 Ga0436361_0042265 Ga0436361_0042265_439_2052 537
12 3300031665 Ga0316575_10033481 Ga0316575_100334811 540
13 3300031691 Ga0316579_10045115 Ga0316579_100451151 540
14 3300031727 Ga0316576_10097801 Ga0316576_100978011 540
15 3300031728 Ga0316578_10070880 Ga0316578_100708801 540
16 3300031733 Ga0316577_10052962 Ga0316577_100529621 540
17 3300032133 Ga0316583_10025437 Ga0316583_100254371 540
18 3300032137 Ga0316585_10020379 Ga0316585_100203791 540
19 3300032139 Ga0316580_10012321 Ga0316580_100123212 540
20 3300032168 Ga0316593_10001413 Ga0316593_100014133 540
21 3300033524 Ga0316592_1004809 Ga0316592_10048091 540
22 3300033527 Ga0316586_1004028 Ga0316586_10040281 540
23 3300033529 Ga0316587_1003303 Ga0316587_10033031 540
24 3300035398 Ga0316574_0085349 Ga0316574_0085349_96_1844 540
25 3300036647 Ga0316582_0070694 Ga0316582_0070694_83_1831 540
26 3300036712 Ga0316584_0118164 Ga0316584_0118164_153_1901 540
27 3300037588 Ga0316581_0018448 Ga0316581_0018448_74_1822 540
28 3300046528 Ga0495642_0031963 Ga0495642_0031963_278_1984 544
29 3300047447 Ga0495685_030167 Ga0495685_030167_120_1826 544
30 3300026089 Ga0207648_10119643 Ga0207648_101196432 547
31 3300028794 Ga0307515_10174912 Ga0307515_101749122 548
32 3300009101 Ga0105247_10072392 Ga0105247_100723922 550
33 3300053119 Ga0500595_025801 Ga0500595_025801_162_1904 550
34 3300005549 Ga0070704_100021394 Ga0070704_1000213943 552
35 3300005981 Ga0081538_10027037 Ga0081538_100270371 552
36 3300005290 Ga0065712_10103880 Ga0065712_101038801 554
37 3300013308 Ga0157375_10224517 Ga0157375_102245171 554
38 3300048904 Ga0496101_0095452 Ga0496101_0095452_141_1847 554
39 3300048907 Ga0496104_0094473 Ga0496104_0094473_553_2259 554
40 3300048909 Ga0496106_0107339 Ga0496106_0107339_273_1979 554
41 3300048910 Ga0496107_0100990 Ga0496107_0100990_278_1984 554
42 3300048911 Ga0496108_0068222 Ga0496108_0068222_959_2665 554
43 3300048912 Ga0496109_0153392 Ga0496109_0153392_201_1907 554
44 3300048917 Ga0496114_0065712 Ga0496114_0065712_973_2679 554
45 3300005549 Ga0070704_100133094 Ga0070704_1001330941 556
46 3300005577 Ga0068857_100063942 Ga0068857_1000639421 556
47 3300046543 Ga0495645_0056237 Ga0495645_0056237_898_2655 556
48 3300046675 Ga0495657_0095667 Ga0495657_0095667_45_1802 556
49 3300047322 Ga0495680_0091719 Ga0495680_0091719_184_1941 556
50 3300005548 Ga0070665_100139855 Ga0070665_1001398552 557
51 3300025900 Ga0207710_10042322 Ga0207710_100423221 557
52 3300048929 Ga0496126_0139368 Ga0496126_0139368_250_1992 557
53 3300053123 Ga0500614_009940 Ga0500614_009940_218_1954 557
54 3300053163 Ga0500639_051460 Ga0500639_051460_181_1917 557
55 3300006844 Ga0075428_100238494 Ga0075428_1002384941 558
56 3300021361 Ga0213872_10021983 Ga0213872_100219831 560
57 3300021441 Ga0213871_10007902 Ga0213871_100079022 560
58 3300039438 Ga0436360_0772953 Ga0436360_0772953_529_2235 560
59 3300039447 Ga0436361_0990700 Ga0436361_0990700_547_2253 560
60 3300059421 Ga0590071_002047 Ga0590071_002047_2739_4475 561
61 3300059424 Ga0590075_011709 Ga0590075_011709_247_1983 561
62 3300059426 Ga0590077_010320 Ga0590077_010320_144_1880 561
63 3300049572 Ga0501036_0092651 Ga0501036_0092651_460_2220 563
64 3300049574 Ga0501038_0109465 Ga0501038_0109465_103_1863 563
65 3300049575 Ga0501039_0107217 Ga0501039_0107217_189_1949 563
66 3300049576 Ga0501040_0002262 Ga0501040_0002262_4838_6598 563
67 3300049578 Ga0501042_0083129 Ga0501042_0083129_237_1997 563
68 3300049582 Ga0501048_0095036 Ga0501048_0095036_139_1899 563
69 3300049588 Ga0501072_0107205 Ga0501072_0107205_308_2068 563
70 3300049743 Ga0501081_0059947 Ga0501081_0059947_506_2266 563
71 3300054114 Ga0501084_0053000 Ga0501084_0053000_101_1861 563
72 3300060353 Ga0501082_0157773 Ga0501082_0157773_93_1853 563
73 3300061734 Ga0530510_0053516 Ga0530510_0053516_403_2163 563
74 3300061734 Ga0530510_0063050 Ga0530510_0063050_509_2269 563
75 3300021384 Ga0213876_10055563 Ga0213876_100555631 564
76 3300031665 Ga0316575_10020379 Ga0316575_100203792 564
77 3300039437 Ga0436365_1440830 Ga0436365_1440830_180_1922 564
78 3300038735 Ga0400485_19445 Ga0400485_19445_405_2141 565
79 3300039110 Ga0400487_03455 Ga0400487_03455_493_2229 565
80 3300031691 Ga0316579_10037052 Ga0316579_100370522 567
81 3300031728 Ga0316578_10071646 Ga0316578_100716461 567
82 3300033545 Ga0316214_1003195 Ga0316214_10031951 567
83 3300036647 Ga0316582_0076682 Ga0316582_0076682_283_2016 567
84 3300038443 Ga0395901_0191294 Ga0395901_0191294_192_1955 567
85 3300003320 rootH2_10125587 rootH2_101255871 568
86 3300003322 rootL2_10283023 rootL2_102830232 568
87 3300003323 rootH1_10181757 rootH1_101817571 568
88 3300005518 Ga0070699_100063763 Ga0070699_1000637632 568
89 3300005843 Ga0068860_100124055 Ga0068860_1001240551 568
90 3300007788 Ga0099795_10007971 Ga0099795_100079711 568
91 3300009147 Ga0114129_10185653 Ga0114129_101856532 568
92 3300009545 Ga0105237_10169602 Ga0105237_101696022 568
93 3300021384 Ga0213876_10061137 Ga0213876_100611371 568
94 3300027512 Ga0209179_1001323 Ga0209179_10013231 568
95 3300027671 Ga0209588_1020043 Ga0209588_10200431 568
96 3300028381 Ga0268264_10083056 Ga0268264_100830561 568
97 3300030521 Ga0307511_10000105 Ga0307511_1000010567 568
98 3300031730 Ga0307516_10155407 Ga0307516_101554072 568
99 3300031733 Ga0316577_10051754 Ga0316577_100517542 568
100 3300035113 Ga0373936_0009715 Ga0373936_0009715_410_2116 568
101 3300035171 Ga0373946_0040537 Ga0373946_0040537_180_1889 568
102 3300035398 Ga0316574_0036125 Ga0316574_0036125_734_2443 568
103 3300036647 Ga0316582_0077425 Ga0316582_0077425_241_2001 568
104 3300036712 Ga0316584_0093386 Ga0316584_0093386_103_1809 568
105 3300038726 Ga0400490_08643 Ga0400490_08643_58_1764 568
106 3300039437 Ga0436365_1821638 Ga0436365_1821638_505_2211 568
107 3300044656 Ga0466969_0027203 Ga0466969_0027203_1164_2870 568
108 3300044684 Ga0466966_0086768 Ga0466966_0086768_35_1741 568
109 3300044693 Ga0466961_0058324 Ga0466961_0058324_573_2279 568
110 3300045049 Ga0466959_0122553 Ga0466959_0122553_129_1835 568
111 3300045836 Ga0466958_0072677 Ga0466958_0072677_334_2040 568
112 3300046499 Ga0495594_0044659 Ga0495594_0044659_250_1956 568
113 3300046507 Ga0495606_0080053 Ga0495606_0080053_92_1798 568
114 3300046642 Ga0495634_0058808 Ga0495634_0058808_822_2531 568
115 3300047320 Ga0495672_0006149 Ga0495672_0006149_6807_8513 568
116 3300047320 Ga0495672_0072083 Ga0495672_0072083_167_1873 568
117 3300050507 nmdc:mga05p37_194063_c1 nmdc:mga05p37_194063_c1_633_2339 568
118 3300053083 Ga0495655_0002791 Ga0495655_0002791_1024_2730 568
119 3300053153 Ga0500616_0001481 Ga0500616_0001481_14206_15912 568
120 3300031727 Ga0316576_10120895 Ga0316576_101208951 572
121 3300031728 Ga0316578_10080201 Ga0316578_100802011 572
122 3300009147 Ga0114129_10204822 Ga0114129_102048222 575
123 3300031239 Ga0265328_10030847 Ga0265328_100308471 575
124 3300031507 Ga0307509_10174127 Ga0307509_101741271 575
125 3300048908 Ga0496105_0115837 Ga0496105_0115837_125_1867 575
126 3300049582 Ga0501048_0092278 Ga0501048_0092278_119_1855 575
127 3300050507 nmdc:mga05p37_258919_c1 nmdc:mga05p37_258919_c1_227_1963 575
128 3300053083 Ga0495655_0004710 Ga0495655_0004710_309_2051 575
129 3300053083 Ga0495655_0005095 Ga0495655_0005095_126_1868 575
130 3300028653 Ga0265323_10029583 Ga0265323_100295831 577
131 3300031344 Ga0265316_10104615 Ga0265316_101046151 577
132 3300000546 LJNas_1002590 LJNas_10025902 579
133 3300031090 Ga0265760_10012705 Ga0265760_100127052 579

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01609

DDE_Tnp_1

Transposase DDE domain

217

501

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
3nja-assembly1.cif.gz_B the crystal structure of the pas domain of a ggdef family protein from chromobacterium violaceum atcc 12472. 0.6042 6 47
3kkr-assembly1.cif.gz_A crystal structure of catalytic core domain of biv integrase in crystal form i 0.5752 177 298
1mus-assembly1.cif.gz_A-2 crystal structure of tn5 transposase complexed with resolved outside end dna 0.57 84 484
6vlm-assembly1.cif.gz_A core catalytic domain of hiv integrase in complex with virtual screening hit 0.5665 176 298
4dm0-assembly1.cif.gz_A-2 tn5 transposase: 20mer outside end 2 mn complex 0.5652 84 484
ID Description Score Start End Superfamily
4dduA07 Mainly Beta;Sandwich;EV matrix protein fold; 0.7166 10 47 2.60.510.20
af_A0A0P0WH67_66_286_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.6444 2 50 2.130.10.10
af_P03835_124_352_3.90.350.10 Alpha Beta;Alpha-Beta Complex;Transposase Inhibitor Protein From Tn5; Chain A, domain 1;Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.6441 178 475 3.90.350.10
af_M0R528_20_120_2.30.29.90 Mainly Beta;Roll;PH-domain like; 0.6428 5 47 2.30.29.90
af_P03835_124_352_3.90.350.10 Alpha Beta;Alpha-Beta Complex;Transposase Inhibitor Protein From Tn5; Chain A, domain 1;Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.6294 178 475 3.90.350.10
ID Description Score Start End GO Terms
AF-T1CZ97-F1-model_v4 Transposase, IS4 family protein 0.9842 131 579 GO:0003677
GO:0004803
GO:0006313
AF-V4JEK8-F1-model_v4 deleted 0.984 81 438
AF-T1CZ97-F1-model_v4 Transposase, IS4 family protein 0.982 131 579 GO:0003677
GO:0004803
GO:0006313
AF-A0A1F4NTB3-F1-model_v4 Transposase IS4-like domain-containing protein 0.9805 75 579 GO:0003677
GO:0004803
GO:0006313
AF-A0A1F4NTB3-F1-model_v4 Transposase IS4-like domain-containing protein 0.9786 75 579 GO:0003677
GO:0004803
GO:0006313

Feature Viewer

pLDDT pTM Quality
88.29 0.82 High
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Predicted Structure (AlphaFold2)

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