F092549

General Info

Members Datasets Scaffolds Average Seq Length
117 95 234 325

Family's Representative Sequence

Representative Sequence 3300009093|Ga0105240_10164480|Ga0105240_101644802
Length 351
Sequence LEIPQFIEDIRLLRKPQSGSRDGKQVMDPSTFESVFISGGAGFIGSHLTRRLLKTAALRRLVIFDNFSSGLESYLSDVIHDSRLSIVRADLKDVKAVTEAMKGVDTVFHLAANPDIAKAVTQPDIDFWEGTYLAQNVVEGMRVNGVRRILYTSGSGVYGENAAVEFSEGYGPCIPISTYGASKLACEALISAYCHMFDMEGRAFRFANVVGPRQTHGVGYDFVRRLRADPSQLRILGNGTQSKSYIHVDDVLAAVFLAAEKSSARFDVFNVATDDYVTVTDIAHIAVNVSGLSPTSVRFEYTGGDRGWKGDVPIVRFDVSKIKSLGWSAARTSAQAVRDSIASMREEIANP

Samples

Sample ID Description Type Environment
1 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
2 3300000545 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300005272 Switchgrass rhizosphere microbial communities from Buena Vista Grasslands Wildlife Area, Michigan, USA - BV2.1 v1 Metagenome Rhizosphere
7 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
8 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
9 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
10 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
14 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
21 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
27 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
29 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
30 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
31 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
32 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
33 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
34 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
35 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
36 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
37 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
38 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
39 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
52 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
53 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
54 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
55 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
56 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
57 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
58 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
59 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
60 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
61 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
62 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
63 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
64 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
65 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
66 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
67 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
68 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
69 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
70 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
71 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
72 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
73 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
74 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
75 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
76 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
77 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
78 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
79 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
80 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
81 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
82 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
83 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
84 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
85 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
86 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
87 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
88 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
89 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
90 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
91 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
92 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
93 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
94 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
95 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.15
Metatranscriptomes 0
Isolates 0.85

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.56
Nodule 0
Rhizoplane 0.85
Rhizosphere 90.6
Stem 0
Stem Tuber 0
Unclassified 13.68

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105240_10164480 3300009093 Bacteria 2632
2 CNXas_1000001 3300000545 Bacteria 91563
3 JGI25406J46586_10028441 3300003203 Bacteria 2130
4 rootH2_10005515 3300003320 Bacteria 16695
5 rootH1_10146037 3300003323 Unclassified 2716
6 Ga0065703_1018758 3300005272 Bacteria 13579
7 Ga0065704_10073718 3300005289 Bacteria 6846
8 Ga0065704_10092789 3300005289 Bacteria 2634
9 Ga0065707_10085857 3300005295 Bacteria 5847
10 Ga0070658_10008851 3300005327 Bacteria 8091
11 Ga0070670_100267437 3300005331 Archaea 1491
12 Ga0070689_100118916 3300005340 Unclassified 2109
13 Ga0070675_100104667 3300005354 Unclassified 2387
14 Ga0070714_100000912 3300005435 Bacteria 20923
15 Ga0070705_100123743 3300005440 Unclassified 1674
16 Ga0070706_100044782 3300005467 Bacteria 4087
17 Ga0070665_100000037 3300005548 Bacteria 312727
18 Ga0068855_100015441 3300005563 Bacteria 9192
19 Ga0068863_100008746 3300005841 Bacteria 9888
20 Ga0068858_100001119 3300005842 Bacteria 27746
21 Ga0068858_100205304 3300005842 Bacteria 1864
22 Ga0081539_10000331 3300005985 Bacteria 104820
23 Ga0070717_10003397 3300006028 Bacteria 11389
24 Ga0075367_10056755 3300006178 Bacteria 2327
25 Ga0097621_100200526 3300006237 Bacteria 1732
26 Ga0075428_100013591 3300006844 Bacteria 9065
27 Ga0075431_100096928 3300006847 Bacteria 3045
28 Ga0075429_100083192 3300006880 Bacteria 2790
29 Ga0105240_10002396 3300009093 Bacteria 30187
30 Ga0114129_10016593 3300009147 Bacteria 10493
31 Ga0105242_10015873 3300009176 Bacteria 5851
32 Ga0105238_10274944 3300009551 Bacteria 1665
33 Ga0105249_10000024 3300009553 Bacteria 232947
34 Ga0157369_10057906 3300013105 Bacteria 4180
35 Ga0157374_10228677 3300013296 Bacteria 1827
36 Ga0163162_10080442 3300013306 Bacteria 3326
37 Ga0157372_10040040 3300013307 Bacteria 5175
38 Ga0157375_10359738 3300013308 Archaea 1621
39 Ga0157379_10117105 3300014968 Bacteria 2396
40 Ga0157379_10201786 3300014968 Unclassified 1799
41 Ga0157376_10035167 3300014969 Unclassified 4051
42 Ga0157376_10041338 3300014969 Bacteria 3773
43 Ga0157376_10491137 3300014969 Bacteria 1205
44 Ga0213874_10000168 3300021377 Bacteria 11687
45 Ga0207692_10142893 3300025898 Bacteria 1363
46 Ga0207705_10081058 3300025909 Bacteria 2365
47 Ga0207684_10080661 3300025910 Bacteria 2768
48 Ga0207695_10002112 3300025913 Bacteria 30160
49 Ga0207694_10177361 3300025924 Unclassified 1727
50 Ga0207664_10002101 3300025929 Bacteria 13100
51 Ga0207686_10022934 3300025934 Unclassified 3599
52 Ga0207667_10016523 3300025949 Bacteria 8336
53 Ga0207712_10000034 3300025961 Bacteria 202320
54 Ga0207703_10022453 3300026035 Unclassified 4950
55 Ga0207641_10010711 3300026088 Bacteria 7519
56 Ga0268266_10000046 3300028379 Bacteria 312745
57 Ga0265319_1001187 3300028563 Bacteria 16108
58 Ga0265319_1016813 3300028563 Bacteria 2799
59 Ga0265334_10002335 3300028573 Bacteria 8929
60 Ga0265318_10000005 3300028577 Bacteria 303630
61 Ga0265318_10013725 3300028577 Bacteria 3414
62 Ga0265323_10000013 3300028653 Bacteria 107343
63 Ga0265323_10009947 3300028653 Unclassified 3866
64 Ga0265322_10000576 3300028654 Bacteria 13941
65 Ga0265322_10001215 3300028654 Bacteria 8770
66 Ga0265336_10001650 3300028666 Bacteria 9867
67 Ga0307515_10177900 3300028794 Bacteria 2090
68 Ga0265324_10013651 3300029957 Bacteria 3024
69 Ga0265332_10016768 3300031238 Bacteria 3232
70 Ga0265320_10001379 3300031240 Bacteria 17657
71 Ga0265320_10032645 3300031240 Bacteria 2662
72 Ga0265320_10054189 3300031240 Bacteria 1935
73 Ga0265339_10003442 3300031249 Bacteria 11071
74 Ga0265339_10058147 3300031249 Bacteria 2089
75 Ga0265331_10079198 3300031250 Bacteria 1529
76 Ga0265327_10000074 3300031251 Bacteria 214435
77 Ga0265316_10000485 3300031344 Bacteria 45047
78 Ga0265316_10168362 3300031344 Unclassified 1635
79 Ga0265316_10214713 3300031344 Unclassified 1421
80 Ga0265313_10004506 3300031595 Bacteria 10659
81 Ga0265314_10002793 3300031711 Bacteria 17425
82 Ga0265314_10011548 3300031711 Bacteria 7276
83 Ga0265314_10021568 3300031711 Bacteria 4948
84 Ga0265342_10018192 3300031712 Bacteria 4558
85 Ga0265342_10039636 3300031712 Bacteria 2861
86 Ga0373926_0018563 3300035083 Unclassified 2394
87 Ga0373934_0033067 3300035086 Bacteria 2030
88 Ga0373923_0154233 3300035111 Bacteria 1045
89 Ga0373933_0002025 3300035724 Bacteria 11663
90 Ga0373947_0037371 3300035725 Bacteria 2882
91 Ga0373947_0069281 3300035725 Unclassified 2159
92 Ga0373937_0035927 3300036401 Bacteria 4513
93 Ga0373937_0096689 3300036401 Bacteria 2739
94 Ga0436363_1304200 3300039450 Bacteria 31176
95 Ga0436363_1384988 3300039450 Bacteria 3120
96 Ga0439433_0020247 3300041999 Unclassified 1485
97 Ga0451577_0002312 3300042876 Bacteria 23042
98 Ga0453684_0047119 3300044712 Bacteria 5721
99 Ga0495621_0033761 3300046539 Unclassified 1766
100 Ga0495658_0040236 3300046683 Bacteria 2598
101 Ga0496104_0017875 3300048907 Bacteria 6465
102 Ga0501067_0066621 3300049583 Bacteria 1993
103 Ga0501069_0018285 3300049585 Bacteria 3781
104 Ga0501070_0000069 3300049586 Bacteria 86910
105 Ga0501073_0034559 3300049589 Bacteria 3597
106 Ga0501080_0069325 3300049742 Bacteria 3279
107 Ga0501081_0088252 3300049743 Bacteria 2179
108 Ga0501083_0003194 3300049744 Bacteria 11412
109 Ga0501083_0208768 3300049744 Bacteria 1273
110 nmdc:mga06z11_40377_c1 3300050494 Bacteria 2328
111 nmdc:mga05p37_11604_c1 3300050507 Bacteria 10500
112 nmdc:mga09592_7355_c1 3300050508 Bacteria 8952
113 nmdc:mga06r32_63921_c1 3300050510 Bacteria 3548
114 nmdc:mga08y16_139679_c1 3300050511 Bacteria 2518
115 Ga0500610_0038820 3300053079 Bacteria 2455
116 Ga0501082_0002641 3300060353 Bacteria 15680
117 2788435753 2786546940 Bacteria 6396474
118 Ga0105240_10164480
119 CNXas_1000001
120 JGI25406J46586_10028441
121 rootH2_10005515
122 rootH1_10146037
123 Ga0065703_1018758
124 Ga0065704_10073718
125 Ga0065704_10092789
126 Ga0065707_10085857
127 Ga0070658_10008851
128 Ga0070670_100267437
129 Ga0070689_100118916
130 Ga0070675_100104667
131 Ga0070714_100000912
132 Ga0070705_100123743
133 Ga0070706_100044782
134 Ga0070665_100000037
135 Ga0068855_100015441
136 Ga0068863_100008746
137 Ga0068858_100001119
138 Ga0068858_100205304
139 Ga0081539_10000331
140 Ga0070717_10003397
141 Ga0075367_10056755
142 Ga0097621_100200526
143 Ga0075428_100013591
144 Ga0075431_100096928
145 Ga0075429_100083192
146 Ga0105240_10002396
147 Ga0114129_10016593
148 Ga0105242_10015873
149 Ga0105238_10274944
150 Ga0105249_10000024
151 Ga0157369_10057906
152 Ga0157374_10228677
153 Ga0163162_10080442
154 Ga0157372_10040040
155 Ga0157375_10359738
156 Ga0157379_10117105
157 Ga0157379_10201786
158 Ga0157376_10035167
159 Ga0157376_10041338
160 Ga0157376_10491137
161 Ga0213874_10000168
162 Ga0207692_10142893
163 Ga0207705_10081058
164 Ga0207684_10080661
165 Ga0207695_10002112
166 Ga0207694_10177361
167 Ga0207664_10002101
168 Ga0207686_10022934
169 Ga0207667_10016523
170 Ga0207712_10000034
171 Ga0207703_10022453
172 Ga0207641_10010711
173 Ga0268266_10000046
174 Ga0265319_1001187
175 Ga0265319_1016813
176 Ga0265334_10002335
177 Ga0265318_10000005
178 Ga0265318_10013725
179 Ga0265323_10000013
180 Ga0265323_10009947
181 Ga0265322_10000576
182 Ga0265322_10001215
183 Ga0265336_10001650
184 Ga0307515_10177900
185 Ga0265324_10013651
186 Ga0265332_10016768
187 Ga0265320_10001379
188 Ga0265320_10032645
189 Ga0265320_10054189
190 Ga0265339_10003442
191 Ga0265339_10058147
192 Ga0265331_10079198
193 Ga0265327_10000074
194 Ga0265316_10000485
195 Ga0265316_10168362
196 Ga0265316_10214713
197 Ga0265313_10004506
198 Ga0265314_10002793
199 Ga0265314_10011548
200 Ga0265314_10021568
201 Ga0265342_10018192
202 Ga0265342_10039636
203 Ga0373926_0018563
204 Ga0373934_0033067
205 Ga0373923_0154233
206 Ga0373933_0002025
207 Ga0373947_0037371
208 Ga0373947_0069281
209 Ga0373937_0035927
210 Ga0373937_0096689
211 Ga0436363_1304200
212 Ga0436363_1384988
213 Ga0439433_0020247
214 Ga0451577_0002312
215 Ga0453684_0047119
216 Ga0495621_0033761
217 Ga0495658_0040236
218 Ga0496104_0017875
219 Ga0501067_0066621
220 Ga0501069_0018285
221 Ga0501070_0000069
222 Ga0501073_0034559
223 Ga0501080_0069325
224 Ga0501081_0088252
225 Ga0501083_0003194
226 Ga0501083_0208768
227 nmdc:mga06z11_40377_c1
228 nmdc:mga05p37_11604_c1
229 nmdc:mga09592_7355_c1
230 nmdc:mga06r32_63921_c1
231 nmdc:mga08y16_139679_c1
232 Ga0500610_0038820
233 Ga0501082_0002641
234 2788435753

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

35

272

0.95

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

36

281

0.83

PF13460

NAD_binding_10

NAD(P)H-binding

39

192

0.82

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

36

340

0.82

PF04321

RmlD_sub_bind

RmlD substrate binding domain

33

304

0.8

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

35

311

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ehe-assembly1.cif.gz_A crystal structure of udp-glucose 4 epimerase (gale-1) from archaeoglobus fulgidus 0.9262 3 317
3ehe-assembly1.cif.gz_A crystal structure of udp-glucose 4 epimerase (gale-1) from archaeoglobus fulgidus 0.9171 3 317
3icp-assembly1.cif.gz_A-2 crystal structure of udp-galactose 4-epimerase 0.9087 1 316
3ko8-assembly1.cif.gz_A-2 crystal structure of udp-galactose 4-epimerase 0.9086 1 316
3icp-assembly1.cif.gz_A-2 crystal structure of udp-galactose 4-epimerase 0.9028 1 316
ID Description Score Start End Superfamily
3eheB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9003 3 238 3.40.50.720
3eheB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8828 3 238 3.40.50.720
4lk3E00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8733 2 318 3.40.50.720
6dntA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8706 2 240 3.40.50.720
4zrnB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8692 1 238 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2E6KY56-F1-model_v4 NAD-dependent epimerase/dehydratase domain-containing protein 0.9675 132 317
AF-A0A6V8D709-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9597 166 317
AF-A0A2E6KY56-F1-model_v4 NAD-dependent epimerase/dehydratase domain-containing protein 0.9573 132 317
AF-A0A2E8BU51-F1-model_v4 UDP-glucose 4-epimerase 0.9553 2 316
AF-A0A353YZ88-F1-model_v4 UDP-glucose 4-epimerase 0.9529 183 317

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