F027563

General Info

Members Datasets Scaffolds Average Seq Length
104 82 104 301

Family's Representative Sequence

Representative Sequence 3300035241|Ga0373961_0000029|Ga0373961_0000029_60145_61167
Length 340
Sequence MISRFAPSTTGEAHPGTLLAALLVWLDARSRGGRVVLRLEDLDVTRTKAAWAAQMIDACGWLGLTWDEVVVQSDRRAAHEAALDALAAAGRLYPCSCSRAARAGGRRAPDGSWAYDNTCRGRALPAGGWRAATEAIRVRLDDDRIELVDDGGLDLSQTPARDLGDPIVRRRDHVVAYQLAVVVDDRDAAITDVIRGRDIAPSTATQVMLQRLLGMPTPRYRHHFLLLEPPQGGPSPQGDSDPGFAADRNRSVRLGPGAGKLAKLHGSIPFSQLQARHDGATLCGILAHAAGLLPEPSPCHPGQLVAAFDWGHVPRADRVARWDERGLSITAEDPGAEAPR

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
5 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
6 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
9 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
13 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
14 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
15 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
16 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
17 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
18 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
19 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
20 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
21 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
22 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
23 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
24 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
25 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
36 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
39 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
40 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
41 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
42 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
43 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
44 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
45 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
46 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
47 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
48 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
49 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
50 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
51 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
52 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
53 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
54 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
55 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
56 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
57 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
58 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
59 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
60 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
61 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
62 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
63 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
65 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
66 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
67 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
68 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
69 3300049667 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control Metagenome Rhizosphere
70 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
71 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
72 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
73 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
74 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
75 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
76 3300053099 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 endosphere Metagenome Endosphere
77 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
78 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
79 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
80 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
81 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
82 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.54
Nodule 0
Rhizoplane 0
Rhizosphere 78.85
Stem 0
Stem Tuber 0
Unclassified 9.62

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100397085 3300005329 Bacteria 1315
2 Ga0070690_100009347 3300005330 Bacteria 5678
3 Ga0070689_100067795 3300005340 Bacteria 2782
4 Ga0070689_100599096 3300005340 Bacteria 954
5 Ga0070687_100041486 3300005343 Unclassified 2326
6 Ga0070674_100237141 3300005356 Bacteria 1426
7 Ga0070678_100083245 3300005456 Bacteria 2432
8 Ga0070706_100113988 3300005467 Bacteria 2517
9 Ga0070698_100001599 3300005471 Bacteria 25204
10 Ga0070679_100055901 3300005530 Bacteria 3931
11 Ga0070684_100157300 3300005535 Bacteria 2061
12 Ga0068855_100336984 3300005563 Bacteria 1664
13 Ga0070702_100072432 3300005615 Bacteria 2039
14 Ga0068864_100047943 3300005618 Bacteria 3671
15 Ga0068861_100153424 3300005719 Bacteria 1892
16 Ga0068870_10244127 3300005840 Unclassified 1110
17 Ga0068860_100233887 3300005843 Bacteria 1786
18 Ga0070717_10053776 3300006028 Bacteria 3319
19 Ga0070717_10167330 3300006028 Unclassified 1910
20 Ga0075429_100003538 3300006880 Bacteria 13306
21 Ga0075429_100019330 3300006880 Bacteria 5900
22 Ga0075435_100449150 3300007076 Bacteria 1112
23 Ga0111539_10002453 3300009094 Bacteria 24648
24 Ga0105245_10000061 3300009098 Bacteria 118794
25 Ga0105242_10346407 3300009176 Bacteria 1371
26 Ga0157374_10046306 3300013296 Unclassified 4027
27 Ga0157378_10567155 3300013297 Unclassified 1143
28 Ga0207662_10052068 3300025918 Unclassified 2436
29 Ga0207652_10027735 3300025921 Bacteria 4722
30 Ga0207687_10000080 3300025927 Bacteria 70391
31 Ga0207686_10289425 3300025934 Bacteria 1212
32 Ga0207670_10038192 3300025936 Bacteria 3135
33 Ga0207670_10080351 3300025936 Bacteria 2279
34 Ga0207670_10140693 3300025936 Unclassified 1779
35 Ga0207670_10154232 3300025936 Unclassified 1708
36 Ga0207669_10096891 3300025937 Bacteria 1938
37 Ga0207689_10020671 3300025942 Bacteria 5536
38 Ga0207689_10028598 3300025942 Bacteria 4661
39 Ga0207676_10167223 3300026095 Bacteria 1912
40 Ga0207675_100236052 3300026118 Bacteria 1765
41 Ga0207683_10017643 3300026121 Bacteria 6085
42 Ga0207428_10001477 3300027907 Bacteria 24614
43 Ga0268266_10001054 3300028379 Bacteria 34564
44 Ga0268264_10098171 3300028381 Bacteria 2540
45 Ga0268264_10192119 3300028381 Bacteria 1862
46 Ga0307517_10020508 3300028786 Bacteria 8413
47 Ga0265338_10018574 3300028800 Bacteria 7432
48 Ga0265332_10036772 3300031238 Bacteria 2125
49 Ga0307513_10016064 3300031456 Bacteria 9045
50 Ga0307513_10173547 3300031456 Unclassified 2030
51 Ga0307509_10000264 3300031507 Bacteria 86090
52 Ga0307509_10003161 3300031507 Bacteria 25509
53 Ga0307509_10048061 3300031507 Bacteria 4585
54 Ga0307509_10075613 3300031507 Bacteria 3498
55 Ga0307508_10013687 3300031616 Bacteria 7407
56 Ga0307516_10030623 3300031730 Bacteria 5428
57 Ga0307516_10033847 3300031730 Bacteria 5140
58 Ga0307406_10051685 3300031901 Bacteria 2610
59 Ga0373949_0000140 3300035090 Bacteria 27064
60 Ga0373936_0000027 3300035113 Bacteria 119134
61 Ga0373936_0063048 3300035113 Bacteria 1517
62 Ga0373956_0006831 3300035119 Bacteria 4580
63 Ga0373961_0000029 3300035241 Bacteria 93421
64 Ga0395899_0073836 3300037312 Bacteria 2493
65 Ga0395900_0085683 3300037418 Bacteria 3238
66 Ga0395900_0105926 3300037418 Bacteria 2888
67 Ga0395901_0034239 3300038443 Bacteria 5245
68 Ga0395901_0292486 3300038443 Bacteria 1690
69 Ga0453684_0422217 3300044712 Bacteria 1489
70 Ga0466967_0190256 3300045976 Unclassified 1939
71 Ga0495638_0140210 3300046460 Bacteria 1412
72 Ga0495664_0084593 3300046477 Unclassified 1904
73 Ga0495628_0334883 3300046516 Bacteria 1115
74 Ga0495624_0039374 3300046690 Unclassified 3031
75 Ga0495581_0331499 3300047315 Unclassified 888
76 Ga0495674_0092538 3300047319 Unclassified 2581
77 Ga0501033_0359489 3300049570 Bacteria 1019
78 Ga0501043_0291247 3300049579 Bacteria 1250
79 Ga0501047_0022465 3300049581 Bacteria 6058
80 Ga0501067_0139941 3300049583 Bacteria 1348
81 Ga0501069_0051537 3300049585 Bacteria 2290
82 Ga0501070_0027430 3300049586 Bacteria 4778
83 Ga0501070_0030713 3300049586 Bacteria 4500
84 Ga0501070_0160903 3300049586 Bacteria 1851
85 Ga0501071_0106043 3300049587 Bacteria 2075
86 Ga0501227_000573 3300049665 Bacteria 8046
87 Ga0501230_001196 3300049667 Bacteria 3031
88 Ga0501225_0005193 3300049705 Bacteria 3833
89 nmdc:mga09592_16475_c1 3300050508 Bacteria 6047
90 nmdc:mga09592_4942_c1 3300050508 Bacteria 10809
91 nmdc:mga08y16_1202_c1 3300050511 Bacteria 25564
92 Ga0500578_0148864 3300053086 Bacteria 1459
93 Ga0500566_0007359 3300053094 Bacteria 6521
94 Ga0500566_0015320 3300053094 Bacteria 4499
95 Ga0500640_002909 3300053095 Bacteria 5815
96 Ga0500654_116305 3300053099 Bacteria 1072
97 Ga0500554_000160 3300053102 Bacteria 13849
98 Ga0500554_017062 3300053102 Bacteria 1933
99 Ga0500595_000223 3300053119 Bacteria 38788
100 Ga0500614_000297 3300053123 Bacteria 12776
101 Ga0500614_005300 3300053123 Bacteria 2707
102 Ga0500568_0000289 3300053139 Bacteria 41443
103 Ga0500622_0026573 3300053156 Bacteria 3054
104 Ga0501082_0015419 3300060353 Bacteria 6577

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300047315 Ga0495581_0331499 Ga0495581_0331499_61_846 252
2 3300005843 Ga0068860_100233887 Ga0068860_1002338872 260
3 3300028381 Ga0268264_10192119 Ga0268264_101921192 260
4 3300035119 Ga0373956_0006831 Ga0373956_0006831_3356_4285 265
5 3300005467 Ga0070706_100113988 Ga0070706_1001139882 266
6 3300031456 Ga0307513_10173547 Ga0307513_101735473 270
7 3300038443 Ga0395901_0292486 Ga0395901_0292486_128_985 275
8 3300046477 Ga0495664_0084593 Ga0495664_0084593_62_952 276
9 3300046516 Ga0495628_0334883 Ga0495628_0334883_133_1023 276
10 3300046690 Ga0495624_0039374 Ga0495624_0039374_1812_2702 276
11 3300047319 Ga0495674_0092538 Ga0495674_0092538_564_1454 276
12 3300007076 Ga0075435_100449150 Ga0075435_1004491502 277
13 3300025934 Ga0207686_10289425 Ga0207686_102894251 277
14 3300005840 Ga0068870_10244127 Ga0068870_102441271 279
15 3300031507 Ga0307509_10075613 Ga0307509_100756134 280
16 3300053139 Ga0500568_0000289 Ga0500568_0000289_19734_20651 280
17 3300045976 Ga0466967_0190256 Ga0466967_0190256_687_1574 281
18 3300005563 Ga0068855_100336984 Ga0068855_1003369842 282
19 3300028379 Ga0268266_10001054 Ga0268266_1000105425 282
20 3300037312 Ga0395899_0073836 Ga0395899_0073836_1064_1951 282
21 3300037418 Ga0395900_0085683 Ga0395900_0085683_2068_2955 282
22 3300038443 Ga0395901_0034239 Ga0395901_0034239_2620_3507 282
23 3300049570 Ga0501033_0359489 Ga0501033_0359489_20_910 282
24 3300049581 Ga0501047_0022465 Ga0501047_0022465_1757_2647 282
25 3300049586 Ga0501070_0160903 Ga0501070_0160903_534_1424 282
26 3300006880 Ga0075429_100003538 Ga0075429_1000035386 283
27 3300009094 Ga0111539_10002453 Ga0111539_1000245311 283
28 3300027907 Ga0207428_10001477 Ga0207428_1000147711 283
29 3300050508 nmdc:mga09592_4942_c1 nmdc:mga09592_4942_c1_6043_6975 283
30 3300050511 nmdc:mga08y16_1202_c1 nmdc:mga08y16_1202_c1_10622_11566 283
31 3300009176 Ga0105242_10346407 Ga0105242_103464072 284
32 3300025936 Ga0207670_10154232 Ga0207670_101542322 284
33 3300028800 Ga0265338_10018574 Ga0265338_100185747 284
34 3300005471 Ga0070698_100001599 Ga0070698_1000015998 285
35 3300025936 Ga0207670_10080351 Ga0207670_100803512 285
36 3300025942 Ga0207689_10020671 Ga0207689_100206712 285
37 3300028786 Ga0307517_10020508 Ga0307517_100205086 285
38 3300031901 Ga0307406_10051685 Ga0307406_100516853 285
39 3300053099 Ga0500654_116305 Ga0500654_116305_42_995 285
40 3300053156 Ga0500622_0026573 Ga0500622_0026573_1813_2766 285
41 3300005615 Ga0070702_100072432 Ga0070702_1000724323 286
42 3300006028 Ga0070717_10053776 Ga0070717_100537762 286
43 3300031730 Ga0307516_10030623 Ga0307516_100306234 286
44 3300005340 Ga0070689_100599096 Ga0070689_1005990961 287
45 3300006880 Ga0075429_100019330 Ga0075429_1000193302 287
46 3300031616 Ga0307508_10013687 Ga0307508_100136876 287
47 3300050508 nmdc:mga09592_16475_c1 nmdc:mga09592_16475_c1_4605_5501 287
48 3300053094 Ga0500566_0015320 Ga0500566_0015320_1280_2221 287
49 3300053102 Ga0500554_017062 Ga0500554_017062_720_1748 288
50 3300053123 Ga0500614_005300 Ga0500614_005300_215_1243 288
51 3300005343 Ga0070687_100041486 Ga0070687_1000414862 290
52 3300005356 Ga0070674_100237141 Ga0070674_1002371412 290
53 3300005456 Ga0070678_100083245 Ga0070678_1000832452 290
54 3300013296 Ga0157374_10046306 Ga0157374_100463062 290
55 3300025918 Ga0207662_10052068 Ga0207662_100520682 290
56 3300025936 Ga0207670_10140693 Ga0207670_101406932 290
57 3300025937 Ga0207669_10096891 Ga0207669_100968913 290
58 3300026121 Ga0207683_10017643 Ga0207683_100176436 290
59 3300031507 Ga0307509_10000264 Ga0307509_1000026431 290
60 3300031507 Ga0307509_10048061 Ga0307509_100480615 290
61 3300035090 Ga0373949_0000140 Ga0373949_0000140_24381_25304 290
62 3300037418 Ga0395900_0105926 Ga0395900_0105926_1514_2401 291
63 3300049579 Ga0501043_0291247 Ga0501043_0291247_60_950 292
64 3300049665 Ga0501227_000573 Ga0501227_000573_5989_6900 293
65 3300049667 Ga0501230_001196 Ga0501230_001196_916_1827 293
66 3300049705 Ga0501225_0005193 Ga0501225_0005193_240_1151 293
67 3300053094 Ga0500566_0007359 Ga0500566_0007359_4214_5173 293
68 3300053095 Ga0500640_002909 Ga0500640_002909_648_1607 293
69 3300053102 Ga0500554_000160 Ga0500554_000160_4225_5184 293
70 3300053119 Ga0500595_000223 Ga0500595_000223_1708_2667 293
71 3300053123 Ga0500614_000297 Ga0500614_000297_1815_2774 293
72 3300005618 Ga0068864_100047943 Ga0068864_1000479434 294
73 3300026095 Ga0207676_10167223 Ga0207676_101672233 294
74 3300049583 Ga0501067_0139941 Ga0501067_0139941_129_1055 294
75 3300049585 Ga0501069_0051537 Ga0501069_0051537_1021_1947 294
76 3300049586 Ga0501070_0027430 Ga0501070_0027430_3543_4466 294
77 3300049586 Ga0501070_0030713 Ga0501070_0030713_3147_4073 294
78 3300049587 Ga0501071_0106043 Ga0501071_0106043_479_1405 294
79 3300060353 Ga0501082_0015419 Ga0501082_0015419_2527_3510 294
80 3300005330 Ga0070690_100009347 Ga0070690_1000093478 295
81 3300005340 Ga0070689_100067795 Ga0070689_1000677953 295
82 3300005535 Ga0070684_100157300 Ga0070684_1001573002 295
83 3300005719 Ga0068861_100153424 Ga0068861_1001534242 295
84 3300006028 Ga0070717_10167330 Ga0070717_101673302 295
85 3300013297 Ga0157378_10567155 Ga0157378_105671552 295
86 3300025936 Ga0207670_10038192 Ga0207670_100381922 295
87 3300025942 Ga0207689_10028598 Ga0207689_100285983 295
88 3300026118 Ga0207675_100236052 Ga0207675_1002360522 295
89 3300028381 Ga0268264_10098171 Ga0268264_100981711 295
90 3300031238 Ga0265332_10036772 Ga0265332_100367722 295
91 3300031456 Ga0307513_10016064 Ga0307513_100160645 295
92 3300031507 Ga0307509_10003161 Ga0307509_1000316114 295
93 3300031730 Ga0307516_10033847 Ga0307516_100338474 295
94 3300035113 Ga0373936_0000027 Ga0373936_0000027_32312_33298 295
95 3300035113 Ga0373936_0063048 Ga0373936_0063048_71_991 295
96 3300035241 Ga0373961_0000029 Ga0373961_0000029_60145_61167 295
97 3300044712 Ga0453684_0422217 Ga0453684_0422217_402_1313 295
98 3300046460 Ga0495638_0140210 Ga0495638_0140210_281_1300 295
99 3300053086 Ga0500578_0148864 Ga0500578_0148864_394_1326 295
100 3300005329 Ga0070683_100397085 Ga0070683_1003970852 296
101 3300005530 Ga0070679_100055901 Ga0070679_1000559014 296
102 3300009098 Ga0105245_10000061 Ga0105245_1000006162 296
103 3300025921 Ga0207652_10027735 Ga0207652_100277355 296
104 3300025927 Ga0207687_10000080 Ga0207687_1000008036 296

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00749

tRNA-synt_1c

tRNA synthetases class I (E and Q), catalytic domain

1

231

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1g59-assembly1.cif.gz_A glutamyl-trna synthetase complexed with trna(glu). 0.8499 1 285
2cfo-assembly1.cif.gz_A non-discriminating glutamyl-trna synthetase from thermosynechococcus elongatus in complex with glu 0.8497 1 289
8vc5-assembly1.cif.gz_B crystal structure of glutamyl-trna synthetase glurs from pseudomonas aeruginosa (zinc bound) 0.8308 1 283
7k86-assembly2.cif.gz_B crystal structure of glutamyl-trna synthetase (gltx) from stenotrophomonas maltophilia 0.8291 2 289
8vc5-assembly1.cif.gz_A crystal structure of glutamyl-trna synthetase glurs from pseudomonas aeruginosa (zinc bound) 0.8286 1 285
ID Description Score Start End Superfamily
3akzC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9656 3 226 3.40.50.620
af_Q4CQ45_19_183_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9267 1 101 3.40.50.620
3akzC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9195 3 226 3.40.50.620
2hz7A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9023 1 223 3.40.50.620
2hz7A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.8818 1 223 3.40.50.620
ID Description Score Start End GO Terms
AF-A0A6A2Y0C1-F1-model_v4 Glutamyl/glutaminyl-tRNA synthetase class Ib catalytic domain-containing protein 0.9563 1 69 GO:0004818
GO:0005524
GO:0005739
GO:0006424
AF-A0A2V9VE08-F1-model_v4 Glutamyl/glutaminyl-tRNA synthetase class Ib catalytic domain-containing protein 0.9518 1 90 GO:0004819
GO:0005524
GO:0005829
GO:0006425
AF-A0A4Q3TC91-F1-model_v4 Glutamate--tRNA ligase (EC 6.1.1.17) 0.9493 1 90 GO:0004818
GO:0005524
GO:0006424
AF-A0A6J5XSK1-F1-model_v4 Glutamyl/glutaminyl-tRNA synthetase class Ib catalytic domain-containing protein 0.9251 1 101 GO:0004818
GO:0005524
GO:0005829
GO:0006424
GO:0009791
GO:0017102
GO:0048608
AF-A0A2G9RKQ2-F1-model_v4 Glutamyl/glutaminyl-tRNA synthetase class Ib catalytic domain-containing protein 0.9217 1 101 GO:0004818
GO:0005524
GO:0005829
GO:0006424
GO:0017102

Feature Viewer

pLDDT pTM Quality
91.85 0.89 High
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Predicted Structure (AlphaFold2)

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