F027510

General Info

Members Datasets Scaffolds Average Seq Length
104 82 208 443

Family's Representative Sequence

Representative Sequence 3300035090|Ga0373949_0000248|Ga0373949_0000248_788_2218
Length 476
Sequence MTDGTNDDPTQRTRRLTPPGLSAWLDPEGCPLERPTLADMTAATRELHAALDAHARNAGVRWLHPEHRTIQRDLLGSPEVVAWQEAKAAFLLAGGGAWSELPHLYARYGTPGTGELIAALRGLEGARAALVTDSGMQAIALVADVLLTAGGHAVVMRQVYNKTRTFLEHTAQRIGAQVTLVDDGDLAGLAAAIRPTTQLVLAETFTNPLTRAQDVPALAALTPSLVIDSTIATPWAFDAPLLARGVRVVVGSLTKALGGQDTALGGYIATDDAELANRLMDLVAMRGGILDDERARRIAAGLPAAEAAHARRCASAARLAGFLARHPRIERVFHPSLPDHPDAAVIARDYRRTGSLLAFRVAGADEARHRHIADVLVTCVVPRYALSFDGLTTKVNHHRTVSEYFTPPEQLAALGIDRLIRIGVGIEDADDLIACVNWALHHETDVTPGDLDAWRAQRAARTAPAGAGAKPARTGP

Samples

Sample ID Description Type Environment
1 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
6 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
7 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
8 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
9 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
10 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
11 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
12 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
13 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
14 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
15 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
16 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
17 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
18 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
19 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
20 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
21 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
22 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
23 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
24 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
30 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
34 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
35 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
36 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
37 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
38 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
39 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
40 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
41 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
42 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
43 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
44 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
45 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
46 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
47 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
48 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
49 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
50 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
51 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
52 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
53 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
54 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
55 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
56 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
57 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
58 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
59 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
60 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
61 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
62 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
63 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
64 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
65 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
66 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
67 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
68 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
69 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
70 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
71 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
72 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
73 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
74 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
75 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
76 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
77 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
78 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
79 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
80 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
81 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
82 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.73
Nodule 0
Rhizoplane 0
Rhizosphere 81.73
Stem 0
Stem Tuber 0
Unclassified 7.69

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0373949_0000248 3300035090 Bacteria 20325
2 rootH1_10246159 3300003323 Bacteria 1752
3 Ga0070658_10109812 3300005327 Bacteria 2284
4 Ga0068869_100068995 3300005334 Bacteria 2613
5 Ga0070705_100138791 3300005440 Bacteria 1597
6 Ga0070708_100065801 3300005445 Bacteria 3251
7 Ga0070678_100003361 3300005456 Bacteria 8917
8 Ga0070698_100008635 3300005471 Bacteria 10977
9 Ga0070665_100009210 3300005548 Bacteria 10001
10 Ga0070717_10044870 3300006028 Bacteria 3612
11 Ga0068871_100170188 3300006358 Unclassified 1867
12 Ga0075431_100269485 3300006847 Bacteria 1726
13 Ga0075429_100107487 3300006880 Bacteria 2438
14 Ga0075429_100115182 3300006880 Bacteria 2350
15 Ga0068865_100086328 3300006881 Bacteria 2265
16 Ga0075435_100186777 3300007076 Bacteria 1753
17 Ga0111539_10251975 3300009094 Bacteria 2056
18 Ga0105245_10000099 3300009098 Bacteria 83865
19 Ga0105245_10059793 3300009098 Bacteria 3432
20 Ga0114129_10020787 3300009147 Bacteria 9328
21 Ga0114129_10262859 3300009147 Bacteria 2312
22 Ga0105248_10133337 3300009177 Unclassified 2802
23 Ga0105239_10155243 3300010375 Bacteria 2556
24 Ga0157374_10034183 3300013296 Bacteria 4641
25 Ga0157380_10004421 3300014326 Bacteria 9735
26 Ga0157380_10032808 3300014326 Bacteria 3996
27 Ga0213876_10025916 3300021384 Bacteria 3092
28 Ga0207705_10082914 3300025909 Bacteria 2339
29 Ga0207662_10024355 3300025918 Bacteria 3484
30 Ga0207687_10066032 3300025927 Bacteria 2570
31 Ga0207689_10036095 3300025942 Bacteria 4104
32 Ga0207689_10041986 3300025942 Bacteria 3785
33 Ga0207683_10010909 3300026121 Bacteria 7749
34 Ga0207428_10010638 3300027907 Bacteria 8208
35 Ga0207428_10082398 3300027907 Bacteria 2510
36 Ga0268266_10157988 3300028379 Bacteria 2049
37 Ga0268265_10105359 3300028380 Bacteria 2288
38 Ga0268264_10093913 3300028381 Bacteria 2593
39 Ga0307517_10020586 3300028786 Bacteria 8394
40 Ga0307515_10021554 3300028794 Bacteria 11417
41 Ga0307513_10002020 3300031456 Bacteria 28568
42 Ga0307509_10000007 3300031507 Bacteria 409278
43 Ga0307509_10007443 3300031507 Bacteria 14306
44 Ga0307509_10119546 3300031507 Bacteria 2616
45 Ga0307509_10188615 3300031507 Bacteria 1916
46 Ga0307508_10162755 3300031616 Bacteria 1835
47 Ga0307516_10016452 3300031730 Bacteria 7733
48 Ga0307410_10001315 3300031852 Bacteria 11098
49 Ga0307410_10003007 3300031852 Bacteria 8323
50 Ga0307410_10107436 3300031852 Bacteria 2013
51 Ga0307406_10021071 3300031901 Bacteria 3850
52 Ga0307407_10030627 3300031903 Bacteria 2904
53 Ga0307407_10059557 3300031903 Bacteria 2224
54 Ga0307409_100055763 3300031995 Bacteria 3053
55 Ga0307409_100203252 3300031995 Bacteria 1774
56 Ga0307416_100081161 3300032002 Bacteria 2741
57 Ga0307414_10046457 3300032004 Bacteria 2981
58 Ga0307411_10006800 3300032005 Bacteria 5757
59 Ga0307411_10012230 3300032005 Bacteria 4672
60 Ga0373936_0000022 3300035113 Bacteria 137001
61 Ga0373941_0035691 3300035115 Bacteria 1508
62 Ga0373961_0000074 3300035241 Bacteria 54115
63 Ga0395900_0156499 3300037418 Unclassified 2327
64 Ga0395905_0108665 3300037471 Unclassified 2604
65 Ga0395901_0046781 3300038443 Bacteria 4494
66 Ga0436365_0077379 3300039437 Bacteria 6275
67 Ga0439462_0003015 3300042015 Bacteria 3998
68 Ga0439446_0006120 3300042156 Bacteria 3125
69 Ga0466967_0101284 3300045976 Bacteria 2633
70 Ga0495686_0059507 3300047472 Bacteria 2378
71 Ga0495686_0086033 3300047472 Bacteria 1913
72 Ga0501039_0148877 3300049575 Bacteria 1839
73 Ga0501047_0002383 3300049581 Bacteria 17971
74 Ga0501047_0003487 3300049581 Bacteria 14868
75 Ga0501071_0024484 3300049587 Unclassified 4224
76 Ga0501071_0103275 3300049587 Bacteria 2102
77 Ga0501073_0178263 3300049589 Unclassified 1471
78 Ga0501076_0117823 3300049592 Bacteria 2149
79 Ga0501083_0040191 3300049744 Unclassified 3175
80 Ga0501044_0156309 3300049823 Bacteria 2260
81 nmdc:mga05p37_36328_c1 3300050507 Bacteria 6044
82 nmdc:mga09592_106708_c1 3300050508 Bacteria 2402
83 nmdc:mga09592_20481_c1 3300050508 Bacteria 5439
84 nmdc:mga09592_32540_c1 3300050508 Bacteria 4347
85 nmdc:mga09592_52433_c1 3300050508 Bacteria 3443
86 nmdc:mga06r32_259636_c1 3300050510 Bacteria 1725
87 nmdc:mga08y16_115158_c1 3300050511 Bacteria 2799
88 nmdc:mga0rr50_172912_c1 3300050513 Bacteria 1761
89 Ga0500566_0007402 3300053094 Bacteria 6502
90 Ga0500554_001097 3300053102 Bacteria 5253
91 Ga0500595_000099 3300053119 Bacteria 59073
92 Ga0500614_000458 3300053123 Bacteria 10586
93 Ga0500642_0046095 3300053130 Bacteria 1905
94 Ga0500559_0004572 3300053136 Bacteria 6546
95 Ga0500637_0067818 3300053178 Bacteria 2050
96 Ga0501084_0050304 3300054114 Unclassified 3488
97 Ga0590071_000164 3300059421 Bacteria 19087
98 Ga0590074_000440 3300059423 Bacteria 6022
99 Ga0590075_000399 3300059424 Bacteria 11905
100 Ga0590075_011280 3300059424 Bacteria 2158
101 Ga0590077_000076 3300059426 Bacteria 24905
102 Ga0590077_001013 3300059426 Bacteria 7071
103 Ga0501082_0010389 3300060353 Bacteria 8016
104 Ga0530510_0004389 3300061734 Bacteria 9765
105 Ga0373949_0000248
106 rootH1_10246159
107 Ga0070658_10109812
108 Ga0068869_100068995
109 Ga0070705_100138791
110 Ga0070708_100065801
111 Ga0070678_100003361
112 Ga0070698_100008635
113 Ga0070665_100009210
114 Ga0070717_10044870
115 Ga0068871_100170188
116 Ga0075431_100269485
117 Ga0075429_100107487
118 Ga0075429_100115182
119 Ga0068865_100086328
120 Ga0075435_100186777
121 Ga0111539_10251975
122 Ga0105245_10000099
123 Ga0105245_10059793
124 Ga0114129_10020787
125 Ga0114129_10262859
126 Ga0105248_10133337
127 Ga0105239_10155243
128 Ga0157374_10034183
129 Ga0157380_10004421
130 Ga0157380_10032808
131 Ga0213876_10025916
132 Ga0207705_10082914
133 Ga0207662_10024355
134 Ga0207687_10066032
135 Ga0207689_10036095
136 Ga0207689_10041986
137 Ga0207683_10010909
138 Ga0207428_10010638
139 Ga0207428_10082398
140 Ga0268266_10157988
141 Ga0268265_10105359
142 Ga0268264_10093913
143 Ga0307517_10020586
144 Ga0307515_10021554
145 Ga0307513_10002020
146 Ga0307509_10000007
147 Ga0307509_10007443
148 Ga0307509_10119546
149 Ga0307509_10188615
150 Ga0307508_10162755
151 Ga0307516_10016452
152 Ga0307410_10001315
153 Ga0307410_10003007
154 Ga0307410_10107436
155 Ga0307406_10021071
156 Ga0307407_10030627
157 Ga0307407_10059557
158 Ga0307409_100055763
159 Ga0307409_100203252
160 Ga0307416_100081161
161 Ga0307414_10046457
162 Ga0307411_10006800
163 Ga0307411_10012230
164 Ga0373936_0000022
165 Ga0373941_0035691
166 Ga0373961_0000074
167 Ga0395900_0156499
168 Ga0395905_0108665
169 Ga0395901_0046781
170 Ga0436365_0077379
171 Ga0439462_0003015
172 Ga0439446_0006120
173 Ga0466967_0101284
174 Ga0495686_0059507
175 Ga0495686_0086033
176 Ga0501039_0148877
177 Ga0501047_0002383
178 Ga0501047_0003487
179 Ga0501071_0024484
180 Ga0501071_0103275
181 Ga0501073_0178263
182 Ga0501076_0117823
183 Ga0501083_0040191
184 Ga0501044_0156309
185 nmdc:mga05p37_36328_c1
186 nmdc:mga09592_106708_c1
187 nmdc:mga09592_20481_c1
188 nmdc:mga09592_32540_c1
189 nmdc:mga09592_52433_c1
190 nmdc:mga06r32_259636_c1
191 nmdc:mga08y16_115158_c1
192 nmdc:mga0rr50_172912_c1
193 Ga0500566_0007402
194 Ga0500554_001097
195 Ga0500595_000099
196 Ga0500614_000458
197 Ga0500642_0046095
198 Ga0500559_0004572
199 Ga0500637_0067818
200 Ga0501084_0050304
201 Ga0590071_000164
202 Ga0590074_000440
203 Ga0590075_000399
204 Ga0590075_011280
205 Ga0590077_000076
206 Ga0590077_001013
207 Ga0501082_0010389
208 Ga0530510_0004389

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01053

Cys_Met_Meta_PP

Cys/Met metabolism PLP-dependent enzyme

85

441

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
4l0o-assembly3.cif.gz_K-4 structure determination of cystathionine gamma-synthase from helicobacter pylori 0.9591 82 426
4l0o-assembly2.cif.gz_H structure determination of cystathionine gamma-synthase from helicobacter pylori 0.9588 82 426
4l0o-assembly3.cif.gz_A structure determination of cystathionine gamma-synthase from helicobacter pylori 0.9538 81 426
5tsu-assembly2.cif.gz_F active conformation for engineered human cystathionine gamma lyase (e59n, r119l, e339v) to depleting methionine 0.9536 82 424
8biu-assembly1.cif.gz_A-2 cystathionine gamma-lyase in complex with cystathionine 0.9522 82 426
ID Description Score Start End Superfamily
af_P9WGB7_1_258_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9419 82 285 3.40.640.10
af_Q2G119_4_242_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9378 83 285 3.40.640.10
af_A0A1D6P7H0_376_509_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9364 290 426 3.90.1150.10
af_A4IBL4_19_270_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9357 81 285 3.40.640.10
af_I1JN71_90_331_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.933 79 285 3.40.640.10
ID Description Score Start End GO Terms
AF-A0A848BM82-F1-model_v4 Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.9588 81 426 GO:0005737
GO:0008483
GO:0016846
GO:0019346
GO:0030170
AF-A0A2V8MMA9-F1-model_v4 Methionine biosynthesis PLP-dependent protein (EC 2.5.1.48) 0.9571 83 342 GO:0003962
GO:0005737
GO:0016846
GO:0019346
GO:0030170
AF-A0A4R7F260-F1-model_v4 Cystathionine gamma-lyase 0.956 83 425 GO:0003962
GO:0004123
GO:0005737
GO:0019343
GO:0019346
GO:0030170
AF-A0A2T6P589-F1-model_v4 deleted 0.9558 81 426
AF-D7FFQ9-F1-model_v4 Cystathionine gamma-synthase cystathionine beta-lyase fusion protein (EC 2.5.1.48) 0.9557 81 426 GO:0003962
GO:0004123
GO:0005737
GO:0019343
GO:0019346
GO:0030170

Map