F027394

General Info

Members Datasets Scaffolds Average Seq Length
104 88 208 133

Family's Representative Sequence

Representative Sequence 3300031824|Ga0307413_10332800|Ga0307413_103328002
Length 127
Sequence MAATTGAARKAAGEEGEARALAHLQRAGLRLVERNYRVAAGPRARGGEIDLILRARDGTLVFVEVRQRATVTHGGAAASVSAAKRQRLIHAARSYLLRYASPPPCRFDVVAIDGDRLEWLVAAFDAA

Samples

Sample ID Description Type Environment
1 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
7 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
8 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
9 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
10 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
11 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
12 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
13 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
14 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
15 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
16 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
17 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
18 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
19 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
21 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
22 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
23 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
24 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
25 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
39 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
40 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
43 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
44 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
45 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
46 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
47 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
48 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
49 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
50 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
51 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
52 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
53 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
54 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
55 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
56 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
57 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
58 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
59 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
60 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
61 3300042116 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126F_E14_082316_1792 Metagenome Rhizosphere
62 3300042530 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530L_E14_082316_2047 Metagenome Rhizosphere
63 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
64 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
65 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
66 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
67 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
68 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
69 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
70 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
71 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
72 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
73 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
76 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
77 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
78 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
79 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
80 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
81 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
82 2643221570 Acidovorax sp. Root568 Isolate Unclassified
83 2643221611 Acidovorax sp. Root219 Isolate Unclassified
84 2643221717 Acidovorax sp. Root267 Isolate Unclassified
85 2842718218 Acidovorax sp. R-73343 Isolate Unclassified
86 2881101125 Ramlibacter rhizophilus CCTCC AB2015357 Isolate Rhizosphere
87 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
88 2974320154 Acidovorax wautersii SORGH_AS 335 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.27
Metatranscriptomes 0
Isolates 6.73

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.5
Nodule 0
Rhizoplane 1.92
Rhizosphere 72.12
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307413_10332800 3300031824 Bacteria 1165
2 Ga0070658_10092026 3300005327 Bacteria 2500
3 Ga0070670_100035981 3300005331 Bacteria 4262
4 Ga0070660_100464686 3300005339 Bacteria 1051
5 Ga0070714_100035274 3300005435 Bacteria 4192
6 Ga0070678_100056053 3300005456 Bacteria 2880
7 Ga0070707_100177114 3300005468 Bacteria 2079
8 Ga0070679_100135997 3300005530 Bacteria 2439
9 Ga0068855_100046871 3300005563 Bacteria 5108
10 Ga0068864_100275270 3300005618 Bacteria 1570
11 Ga0068862_100529266 3300005844 Bacteria 1123
12 Ga0075365_10003738 3300006038 Bacteria 7917
13 Ga0075364_10017375 3300006051 Bacteria 4494
14 Ga0075432_10005032 3300006058 Bacteria 4501
15 Ga0075362_10147898 3300006177 Bacteria 1126
16 Ga0105244_10170519 3300009036 Bacteria 1035
17 Ga0105240_10001543 3300009093 Bacteria 39121
18 Ga0105245_10441468 3300009098 Bacteria 1308
19 Ga0114129_12357866 3300009147 Bacteria 638
20 Ga0105241_10227960 3300009174 Bacteria 1569
21 Ga0105238_11047846 3300009551 Bacteria 837
22 Ga0105238_11539174 3300009551 Bacteria 694
23 Ga0157376_10076840 3300014969 Bacteria 2854
24 Ga0209025_1032666 3300025294 Bacteria 2426
25 Ga0209564_1003578 3300025295 Bacteria 10382
26 Ga0207654_10067767 3300025911 Bacteria 2109
27 Ga0207695_10178736 3300025913 Bacteria 2044
28 Ga0207652_10233660 3300025921 Bacteria 1657
29 Ga0207694_10502513 3300025924 Bacteria 1015
30 Ga0207650_10027463 3300025925 Bacteria 4075
31 Ga0207664_10964299 3300025929 Bacteria 765
32 Ga0207686_10000781 3300025934 Bacteria 19580
33 Ga0207667_10113288 3300025949 Bacteria 2796
34 Ga0207639_10302156 3300026041 Bacteria 1415
35 Ga0207702_10773349 3300026078 Bacteria 949
36 Ga0207641_10260880 3300026088 Bacteria 1622
37 Ga0207676_10217165 3300026095 Bacteria 1700
38 Ga0207674_10655642 3300026116 Bacteria 1014
39 Ga0209995_1018030 3300027471 Bacteria 1163
40 Ga0209971_1009178 3300027682 Bacteria 2345
41 Ga0209974_10012052 3300027876 Bacteria 2895
42 Ga0268265_10322937 3300028380 Bacteria 1399
43 Ga0307515_10099540 3300028794 Bacteria 3529
44 Ga0307513_10000266 3300031456 Bacteria 75947
45 Ga0307513_10081072 3300031456 Bacteria 3345
46 Ga0307509_10696236 3300031507 Bacteria 683
47 Ga0307408_100000926 3300031548 Bacteria 22869
48 Ga0307516_10073027 3300031730 Bacteria 3288
49 Ga0307413_10784752 3300031824 Bacteria 799
50 Ga0307406_10000530 3300031901 Bacteria 21943
51 Ga0307406_10632351 3300031901 Bacteria 886
52 Ga0307412_10082172 3300031911 Bacteria 2230
53 Ga0307412_10130581 3300031911 Bacteria 1824
54 Ga0307412_10365511 3300031911 Bacteria 1163
55 Ga0307409_100192999 3300031995 Bacteria 1815
56 Ga0307416_100654006 3300032002 Bacteria 1136
57 Ga0307416_100850703 3300032002 Bacteria 1010
58 Ga0307411_10272589 3300032005 Bacteria 1343
59 Ga0307411_10774407 3300032005 Bacteria 843
60 Ga0307411_11145798 3300032005 Bacteria 703
61 Ga0373931_0555680 3300035691 Bacteria 746
62 Ga0395901_0080066 3300038443 Bacteria 3410
63 Ga0395901_0271500 3300038443 Bacteria 1764
64 Ga0436361_0652975 3300039447 Bacteria 10915
65 Ga0439461_0195830 3300041410 Bacteria 541
66 Ga0451791_1396756 3300041451 Bacteria 841
67 Ga0451837_0144520 3300041494 Bacteria 624
68 Ga0451853_2721595 3300041512 Bacteria 933
69 Ga0439449_0004462 3300042007 Bacteria 5400
70 Ga0439462_0001634 3300042015 Bacteria 5042
71 Ga0450912_014471 3300042116 Bacteria 714
72 Ga0450916_034049 3300042530 Bacteria 752
73 Ga0450893_0031834 3300042532 Bacteria 942
74 Ga0451577_0003536 3300042876 Bacteria 17284
75 Ga0451577_0046385 3300042876 Bacteria 3888
76 Ga0453683_0006516 3300044673 Bacteria 8007
77 Ga0466966_0148391 3300044684 Bacteria 1431
78 Ga0453684_0022442 3300044712 Bacteria 9359
79 Ga0453684_0496369 3300044712 Bacteria 1352
80 Ga0451576_0028397 3300045051 Bacteria 5993
81 Ga0451576_0148105 3300045051 Bacteria 2448
82 Ga0495615_0120809 3300048090 Bacteria 758
83 Ga0496110_0979677 3300048913 Bacteria 753
84 Ga0496119_0108061 3300048922 Bacteria 1550
85 Ga0496125_0066059 3300048928 Bacteria 2861
86 Ga0501031_0032108 3300049568 Bacteria 3424
87 Ga0501037_0114783 3300049573 Bacteria 1938
88 Ga0501266_000105 3300049763 Bacteria 10287
89 Ga0501280_062413 3300049776 Bacteria 651
90 nmdc:mga00v17_8011_c1 3300050491 Bacteria 5669
91 nmdc:mga0yw44_160168_c1 3300050492 Bacteria 1473
92 Ga0500593_000465 3300053117 Bacteria 16083
93 Ga0500620_102089 3300053155 Bacteria 1003
94 Ga0500645_000879 3300053730 Bacteria 17466
95 Ga0500645_001436 3300053730 Bacteria 12087
96 Ga0500645_003129 3300053730 Bacteria 6894
97 Ga0500645_020925 3300053730 Bacteria 2022
98 2643866441 2643221570 Bacteria 5103772
99 2644072577 2643221611 Bacteria 6820941
100 2644648264 2643221717 Bacteria 5676132
101 2842722273 2842718218 Bacteria 4560148
102 2881102143 2881101125 Bacteria 4590519
103 2928118473 2928115317 Bacteria 6477646
104 2974320942 2974320154 Bacteria 4571377
105 Ga0307413_10332800
106 Ga0070658_10092026
107 Ga0070670_100035981
108 Ga0070660_100464686
109 Ga0070714_100035274
110 Ga0070678_100056053
111 Ga0070707_100177114
112 Ga0070679_100135997
113 Ga0068855_100046871
114 Ga0068864_100275270
115 Ga0068862_100529266
116 Ga0075365_10003738
117 Ga0075364_10017375
118 Ga0075432_10005032
119 Ga0075362_10147898
120 Ga0105244_10170519
121 Ga0105240_10001543
122 Ga0105245_10441468
123 Ga0114129_12357866
124 Ga0105241_10227960
125 Ga0105238_11047846
126 Ga0105238_11539174
127 Ga0157376_10076840
128 Ga0209025_1032666
129 Ga0209564_1003578
130 Ga0207654_10067767
131 Ga0207695_10178736
132 Ga0207652_10233660
133 Ga0207694_10502513
134 Ga0207650_10027463
135 Ga0207664_10964299
136 Ga0207686_10000781
137 Ga0207667_10113288
138 Ga0207639_10302156
139 Ga0207702_10773349
140 Ga0207641_10260880
141 Ga0207676_10217165
142 Ga0207674_10655642
143 Ga0209995_1018030
144 Ga0209971_1009178
145 Ga0209974_10012052
146 Ga0268265_10322937
147 Ga0307515_10099540
148 Ga0307513_10000266
149 Ga0307513_10081072
150 Ga0307509_10696236
151 Ga0307408_100000926
152 Ga0307516_10073027
153 Ga0307413_10784752
154 Ga0307406_10000530
155 Ga0307406_10632351
156 Ga0307412_10082172
157 Ga0307412_10130581
158 Ga0307412_10365511
159 Ga0307409_100192999
160 Ga0307416_100654006
161 Ga0307416_100850703
162 Ga0307411_10272589
163 Ga0307411_10774407
164 Ga0307411_11145798
165 Ga0373931_0555680
166 Ga0395901_0080066
167 Ga0395901_0271500
168 Ga0436361_0652975
169 Ga0439461_0195830
170 Ga0451791_1396756
171 Ga0451837_0144520
172 Ga0451853_2721595
173 Ga0439449_0004462
174 Ga0439462_0001634
175 Ga0450912_014471
176 Ga0450916_034049
177 Ga0450893_0031834
178 Ga0451577_0003536
179 Ga0451577_0046385
180 Ga0453683_0006516
181 Ga0466966_0148391
182 Ga0453684_0022442
183 Ga0453684_0496369
184 Ga0451576_0028397
185 Ga0451576_0148105
186 Ga0495615_0120809
187 Ga0496110_0979677
188 Ga0496119_0108061
189 Ga0496125_0066059
190 Ga0501031_0032108
191 Ga0501037_0114783
192 Ga0501266_000105
193 Ga0501280_062413
194 nmdc:mga00v17_8011_c1
195 nmdc:mga0yw44_160168_c1
196 Ga0500593_000465
197 Ga0500620_102089
198 Ga0500645_000879
199 Ga0500645_001436
200 Ga0500645_003129
201 Ga0500645_020925
202 2643866441
203 2644072577
204 2644648264
205 2842722273
206 2881102143
207 2928118473
208 2974320942

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02021

UPF0102

Uncharacterised protein family UPF0102

16

112

0.91

PF08378

NERD

Nuclease-related domain

12

100

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
3fov-assembly1.cif.gz_A crystal structure of protein rpa0323 of unknown function from rhodopseudomonas palustris 0.8731 20 128
3fov-assembly1.cif.gz_A crystal structure of protein rpa0323 of unknown function from rhodopseudomonas palustris 0.8489 20 128
6wxy-assembly1.cif.gz_C crystal structure of ca6-bound card1 0.6526 32 71
5zyt-assembly4.cif.gz_D crystal structure of human mgme1 with 3' overhang double strand dna3 0.6398 34 123
5zyt-assembly1.cif.gz_A crystal structure of human mgme1 with 3' overhang double strand dna3 0.6364 35 123
ID Description Score Start End Superfamily
af_P45465_23_131_3.40.1350.10 Alpha Beta;3-Layer(aba) Sandwich;Trna Endonuclease; Chain: A, domain 1; 0.9221 21 127 3.40.1350.10
af_P45465_23_131_3.40.1350.10 Alpha Beta;3-Layer(aba) Sandwich;Trna Endonuclease; Chain: A, domain 1; 0.8896 21 127 3.40.1350.10
3fovA00 Alpha Beta;3-Layer(aba) Sandwich;Trna Endonuclease; Chain: A, domain 1; 0.8814 20 128 3.40.1350.10
3fovA00 Alpha Beta;3-Layer(aba) Sandwich;Trna Endonuclease; Chain: A, domain 1; 0.8568 20 128 3.40.1350.10
af_P9WFM9_15_126_3.40.1350.10 Alpha Beta;3-Layer(aba) Sandwich;Trna Endonuclease; Chain: A, domain 1; 0.8502 20 123 3.40.1350.10
ID Description Score Start End GO Terms
AF-A0A4Q5UYT7-F1-model_v4 deleted 0.9868 20 128
AF-A0A4Q5V5R6-F1-model_v4 deleted 0.9783 40 128
AF-A0A4Q5UYT7-F1-model_v4 deleted 0.9779 20 128
AF-A0A375FT52-F1-model_v4 UPF0102 protein CO2235_10066 0.9771 20 127 GO:0003676
AF-A0A536X5J6-F1-model_v4 UPF0102 protein E6H58_12365 0.9743 13 128 GO:0003676

Map