F003748

General Info

Members Datasets Scaffolds Average Seq Length
100 84 92 419

Family's Representative Sequence

Representative Sequence 3300028794|Ga0307515_10033707|Ga0307515_100337072
Length 446
Sequence MTDTNHEREPAAGSVYLPPFFRTHLDEQDSDVASHVAAESARQQREIELIAPKNYMSRAVFQAHSSVVALTTIEGYPGKRMHAGMANMDAIELLAMARARQVFGCGYANVQPHSGSQANQAVYFAFLEPGDLVLSMALKAGGHLSHGLPSNMSGRWFRTAEYDVDPVTGLIDYDAAERLAEQLRPKLIVTGGSSYPRVIDYARLRAIADSVGAILLADIAHISGLVAAGVHPSPFPXXXXATSTTNKNLRGPRGGLLLAHEEFTRKLDKAVFPGIQGGPLPELICAKAVALGEAAGPEFADYARAVLDNARTLAAVLAERGHRIVTGGTDTPLVVVDLRPQGLSGADVERALQAVGITCNRNLVPGDTAGPMVTSGVRFGTSAVTTRGFRRAEMTVIADLIADVLDWLERSPTGDPAAERLTAKLVRELAERFPVAFPGSASWEAA

Samples

Sample ID Description Type Environment
1 2508501122 Ensifer yinggardensis WSM1721 Isolate Nodule
2 2511231027 Phyllobacterium sp. YR531 Isolate Rhizosphere
3 2842871566 Phyllobacterium sp. R-73111 Isolate Unclassified
4 2881147464 Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 Isolate Nodule
5 2888343758 Mesorhizobium sp. AA22 Isolate Unclassified
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
16 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
17 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
18 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
19 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
20 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
23 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
24 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
32 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
33 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
34 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
35 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
36 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
37 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
38 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
39 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
40 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
41 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
42 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
43 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
44 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
45 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
46 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
47 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
48 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
49 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
50 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
51 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
52 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
53 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
54 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
55 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
56 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
57 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
58 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
59 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
60 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
61 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
62 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
63 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
64 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
65 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
69 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
70 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
71 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
72 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
73 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
74 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
75 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
76 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
77 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
78 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
79 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
80 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
81 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
82 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
83 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
84 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 92
Metatranscriptomes 0
Isolates 8

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10
Nodule 3
Rhizoplane 0
Rhizosphere 61
Stem 0
Stem Tuber 0
Unclassified 26

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070690_100027068 3300005330 Bacteria 3542
2 Ga0070689_100097324 3300005340 Bacteria 2327
3 Ga0070668_100098387 3300005347 Bacteria 2315
4 Ga0070705_100123451 3300005440 Bacteria 1676
5 Ga0070678_100021044 3300005456 Bacteria 4292
6 Ga0070706_100050436 3300005467 Bacteria 3841
7 Ga0070698_100011463 3300005471 Bacteria 9407
8 Ga0070684_100040850 3300005535 Bacteria 3996
9 Ga0070665_100007565 3300005548 Bacteria 11042
10 Ga0068864_100153854 3300005618 Bacteria 2086
11 Ga0081455_10048152 3300005937 Bacteria 3685
12 Ga0081538_10030244 3300005981 Bacteria 3681
13 Ga0070717_10059900 3300006028 Bacteria 3151
14 Ga0075428_100133341 3300006844 Bacteria 2701
15 Ga0075429_100030940 3300006880 Bacteria 4652
16 Ga0111539_10125565 3300009094 Bacteria 3007
17 Ga0105245_10000594 3300009098 Bacteria 32724
18 Ga0105249_10253985 3300009553 Bacteria 1744
19 Ga0207684_10042027 3300025910 Bacteria 3875
20 Ga0207652_10172243 3300025921 Bacteria 1943
21 Ga0207646_10023483 3300025922 Bacteria 5664
22 Ga0207670_10076080 3300025936 Bacteria 2335
23 Ga0207708_10074494 3300026075 Bacteria 2602
24 Ga0207683_10005015 3300026121 Bacteria 11370
25 Ga0268266_10017731 3300028379 Bacteria 6066
26 Ga0265334_10005248 3300028573 Bacteria 5672
27 Ga0265322_10020568 3300028654 Bacteria 1891
28 Ga0307517_10026483 3300028786 Bacteria 7025
29 Ga0307515_10006679 3300028794 Bacteria 22988
30 Ga0307515_10033707 3300028794 Bacteria 8416
31 Ga0265338_10007823 3300028800 Bacteria 13139
32 Ga0265332_10003251 3300031238 Bacteria 7897
33 Ga0265316_10000003 3300031344 Bacteria 323632
34 Ga0307513_10001222 3300031456 Bacteria 37245
35 Ga0307509_10000149 3300031507 Bacteria 107058
36 Ga0307509_10017382 3300031507 Bacteria 8283
37 Ga0307509_10046896 3300031507 Bacteria 4650
38 Ga0307509_10117507 3300031507 Bacteria 2646
39 Ga0265313_10015681 3300031595 Bacteria 4397
40 Ga0307508_10055276 3300031616 Bacteria 3517
41 Ga0316579_10010414 3300031691 Bacteria 3932
42 Ga0307516_10020764 3300031730 Bacteria 6780
43 Ga0307516_10046975 3300031730 Bacteria 4257
44 Ga0307405_10119952 3300031731 Bacteria 1798
45 Ga0307406_10001797 3300031901 Bacteria 11717
46 Ga0307507_10059699 3300033179 Bacteria 3568
47 Ga0373936_0000018 3300035113 Bacteria 156705
48 Ga0373961_0000025 3300035241 Bacteria 97287
49 Ga0316582_0019994 3300036647 Bacteria 3930
50 Ga0395898_0252175 3300037466 Bacteria 1683
51 Ga0395905_0016677 3300037471 Bacteria 6982
52 Ga0395901_0031663 3300038443 Bacteria 5452
53 Ga0395901_0176800 3300038443 Bacteria 2239
54 Ga0400484_13384 3300038725 Bacteria 10500
55 Ga0400484_22715 3300038725 Bacteria 5239
56 Ga0400484_26096 3300038725 Bacteria 4270
57 Ga0400490_55144 3300038726 Bacteria 10986
58 Ga0400488_04143 3300038741 Bacteria 3540
59 Ga0400488_27729 3300038741 Bacteria 1395
60 Ga0400483_174434 3300039062 Bacteria 11116
61 Ga0400489_52467 3300039093 Bacteria 15482
62 Ga0400489_95411 3300039093 Bacteria 2045
63 Ga0436363_0752594 3300039450 Bacteria 2286
64 Ga0439449_0036122 3300042007 Bacteria 1838
65 Ga0453684_0000036 3300044712 Bacteria 711481
66 Ga0453684_0011305 3300044712 Bacteria 15007
67 Ga0451576_0064344 3300045051 Bacteria 3820
68 Ga0495590_0025775 3300046457 Bacteria 2066
69 Ga0495622_0062613 3300046557 Bacteria 1722
70 Ga0495686_0015824 3300047472 Bacteria 5133
71 Ga0501034_0001906 3300049571 Bacteria 26399
72 Ga0501046_0097304 3300049580 Bacteria 2261
73 Ga0501047_0015012 3300049581 Bacteria 7371
74 Ga0501047_0118050 3300049581 Bacteria 2534
75 Ga0501071_0048642 3300049587 Bacteria 3051
76 Ga0501227_000407 3300049665 Bacteria 9117
77 Ga0501257_004610 3300049686 Bacteria 3012
78 Ga0501280_010416 3300049776 Bacteria 1297
79 Ga0501035_0137872 3300049822 Bacteria 2123
80 nmdc:mga09592_231546_c1 3300050508 Bacteria 1601
81 nmdc:mga09592_38050_c1 3300050508 Bacteria 4037
82 Ga0500566_0003237 3300053094 Bacteria 9740
83 Ga0500640_000043 3300053095 Bacteria 19300
84 Ga0500554_000204 3300053102 Bacteria 12554
85 Ga0500572_002854 3300053111 Bacteria 4062
86 Ga0500595_000064 3300053119 Bacteria 74751
87 Ga0500614_000869 3300053123 Bacteria 7621
88 Ga0500559_0005493 3300053136 Bacteria 5829
89 Ga0500568_0006114 3300053139 Bacteria 6101
90 Ga0500568_0016871 3300053139 Bacteria 3235
91 Ga0500639_047694 3300053163 Bacteria 2237
92 Ga0501082_0018475 3300060353 Bacteria 6006

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300038741 Ga0400488_27729 Ga0400488_27729_13_1119 367
2 3300050508 nmdc:mga09592_231546_c1 nmdc:mga09592_231546_c1_16_1146 376
3 3300026075 Ga0207708_10074494 Ga0207708_100744942 396
4 3300038443 Ga0395901_0176800 Ga0395901_0176800_547_1848 402
5 iso_pu_bacteria 8055632911 8055636937 403
6 3300005548 Ga0070665_100007565 Ga0070665_1000075654 409
7 3300005981 Ga0081538_10030244 Ga0081538_100302444 409
8 3300028379 Ga0268266_10017731 Ga0268266_100177316 409
9 3300006844 Ga0075428_100133341 Ga0075428_1001333413 413
10 3300031691 Ga0316579_10010414 Ga0316579_100104144 413
11 3300039093 Ga0400489_52467 Ga0400489_52467_1909_3195 413
12 3300028573 Ga0265334_10005248 Ga0265334_100052486 414
13 3300031344 Ga0265316_10000003 Ga0265316_100000032 414
14 3300031595 Ga0265313_10015681 Ga0265313_100156815 414
15 3300038725 Ga0400484_22715 Ga0400484_22715_3280_4530 414
16 3300038725 Ga0400484_26096 Ga0400484_26096_840_2108 414
17 3300038726 Ga0400490_55144 Ga0400490_55144_2825_4093 414
18 3300049571 Ga0501034_0001906 Ga0501034_0001906_5636_6898 414
19 3300049776 Ga0501280_010416 Ga0501280_010416_14_1273 414
20 3300005535 Ga0070684_100040850 Ga0070684_1000408502 415
21 3300031731 Ga0307405_10119952 Ga0307405_101199521 415
22 3300036647 Ga0316582_0019994 Ga0316582_0019994_2581_3855 415
23 3300037471 Ga0395905_0016677 Ga0395905_0016677_2917_4188 415
24 3300038741 Ga0400488_04143 Ga0400488_04143_1327_2613 415
25 3300039093 Ga0400489_95411 Ga0400489_95411_506_1774 415
26 3300045051 Ga0451576_0064344 Ga0451576_0064344_2444_3712 415
27 iso_pu_bacteria 2508501122 2509111984 415
28 iso_pu_bacteria 2881147464 2881155157 415
29 iso_pu_bacteria 2888343758 2888349674 415
30 iso_pu_bacteria 2888343758 2888349732 415
31 3300005937 Ga0081455_10048152 Ga0081455_100481522 416
32 3300009094 Ga0111539_10125565 Ga0111539_101255652 416
33 3300025922 Ga0207646_10023483 Ga0207646_100234835 416
34 3300028800 Ga0265338_10007823 Ga0265338_100078238 416
35 3300038725 Ga0400484_13384 Ga0400484_13384_3911_5170 416
36 iso_pu_bacteria 2508501122 2509112003 416
37 iso_pu_bacteria 2511231027 2511388967 416
38 iso_pu_bacteria 2842871566 2842873899 416
39 3300028654 Ga0265322_10020568 Ga0265322_100205681 417
40 3300039062 Ga0400483_174434 Ga0400483_174434_5987_7252 417
41 3300044712 Ga0453684_0000036 Ga0453684_0000036_235800_237110 417
42 3300044712 Ga0453684_0011305 Ga0453684_0011305_2105_3415 417
43 3300049686 Ga0501257_004610 Ga0501257_004610_100_1368 417
44 3300053139 Ga0500568_0016871 Ga0500568_0016871_1040_2299 418
45 3300005330 Ga0070690_100027068 Ga0070690_1000270682 419
46 3300005340 Ga0070689_100097324 Ga0070689_1000973242 419
47 3300005347 Ga0070668_100098387 Ga0070668_1000983872 419
48 3300005440 Ga0070705_100123451 Ga0070705_1001234511 419
49 3300005456 Ga0070678_100021044 Ga0070678_1000210443 419
50 3300005467 Ga0070706_100050436 Ga0070706_1000504361 419
51 3300005471 Ga0070698_100011463 Ga0070698_1000114635 419
52 3300005618 Ga0068864_100153854 Ga0068864_1001538542 419
53 3300006028 Ga0070717_10059900 Ga0070717_100599002 419
54 3300006880 Ga0075429_100030940 Ga0075429_1000309404 419
55 3300009098 Ga0105245_10000594 Ga0105245_1000059423 419
56 3300009553 Ga0105249_10253985 Ga0105249_102539851 419
57 3300025910 Ga0207684_10042027 Ga0207684_100420271 419
58 3300025921 Ga0207652_10172243 Ga0207652_101722432 419
59 3300025936 Ga0207670_10076080 Ga0207670_100760802 419
60 3300026121 Ga0207683_10005015 Ga0207683_100050156 419
61 3300028786 Ga0307517_10026483 Ga0307517_100264834 419
62 3300028794 Ga0307515_10006679 Ga0307515_1000667913 419
63 3300028794 Ga0307515_10033707 Ga0307515_100337072 419
64 3300031238 Ga0265332_10003251 Ga0265332_100032515 419
65 3300031456 Ga0307513_10001222 Ga0307513_1000122225 419
66 3300031507 Ga0307509_10000149 Ga0307509_1000014972 419
67 3300031507 Ga0307509_10017382 Ga0307509_100173826 419
68 3300031507 Ga0307509_10046896 Ga0307509_100468966 419
69 3300031507 Ga0307509_10117507 Ga0307509_101175072 419
70 3300031616 Ga0307508_10055276 Ga0307508_100552762 419
71 3300031730 Ga0307516_10020764 Ga0307516_100207643 419
72 3300031730 Ga0307516_10046975 Ga0307516_100469754 419
73 3300031901 Ga0307406_10001797 Ga0307406_100017977 419
74 3300033179 Ga0307507_10059699 Ga0307507_100596992 419
75 3300035113 Ga0373936_0000018 Ga0373936_0000018_100421_101680 419
76 3300035241 Ga0373961_0000025 Ga0373961_0000025_61210_62469 419
77 3300037466 Ga0395898_0252175 Ga0395898_0252175_342_1601 419
78 3300038443 Ga0395901_0031663 Ga0395901_0031663_2927_4186 419
79 3300039450 Ga0436363_0752594 Ga0436363_0752594_1011_2270 419
80 3300042007 Ga0439449_0036122 Ga0439449_0036122_53_1345 419
81 3300046457 Ga0495590_0025775 Ga0495590_0025775_544_1803 419
82 3300046557 Ga0495622_0062613 Ga0495622_0062613_79_1338 419
83 3300047472 Ga0495686_0015824 Ga0495686_0015824_3386_4645 419
84 3300049580 Ga0501046_0097304 Ga0501046_0097304_91_1350 419
85 3300049581 Ga0501047_0015012 Ga0501047_0015012_1586_2845 419
86 3300049581 Ga0501047_0118050 Ga0501047_0118050_308_1567 419
87 3300049587 Ga0501071_0048642 Ga0501071_0048642_1778_3037 419
88 3300049665 Ga0501227_000407 Ga0501227_000407_1563_2822 419
89 3300049822 Ga0501035_0137872 Ga0501035_0137872_781_2040 419
90 3300050508 nmdc:mga09592_38050_c1 nmdc:mga09592_38050_c1_325_1584 419
91 3300053094 Ga0500566_0003237 Ga0500566_0003237_2135_3394 419
92 3300053095 Ga0500640_000043 Ga0500640_000043_11973_13232 419
93 3300053102 Ga0500554_000204 Ga0500554_000204_1698_2957 419
94 3300053111 Ga0500572_002854 Ga0500572_002854_119_1378 419
95 3300053119 Ga0500595_000064 Ga0500595_000064_28882_30141 419
96 3300053123 Ga0500614_000869 Ga0500614_000869_3741_5000 419
97 3300053136 Ga0500559_0005493 Ga0500559_0005493_2172_3431 419
98 3300053139 Ga0500568_0006114 Ga0500568_0006114_3880_5139 419
99 3300053163 Ga0500639_047694 Ga0500639_047694_629_1888 419
100 3300060353 Ga0501082_0018475 Ga0501082_0018475_3325_4587 419

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00464

SHMT

Serine hydroxymethyltransferase

25

401

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
2w7m-assembly1.cif.gz_A-2 crystal structure of y61absshmt obtained in the presence of glycine and 5-formyl tetrahydrofolate 0.9881 8 409
2w7f-assembly1.cif.gz_A crystal structure of y51fbsshmt l-ser external aldimine 0.9878 9 409
2vmo-assembly1.cif.gz_A crystal structure of n341absshmt gly external aldimine 0.9877 9 409
2vmu-assembly1.cif.gz_A-2 crystal structure of y60absshmt crystallized in the presence of l- allo-thr 0.9875 8 409
2vi9-assembly1.cif.gz_A crystal structure of s172absshmt glycine external aldimine 0.9874 8 409
ID Description Score Start End Superfamily
2dkjA02 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9908 38 286 3.40.640.10
2dkjA02 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9753 38 286 3.40.640.10
2vgsA01 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9703 289 405 3.90.1150.10
4msoB02 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9697 280 413 3.90.1150.10
3n0lB02 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9693 280 412 3.90.1150.10
ID Description Score Start End GO Terms
AF-A0AAK4-F1-model_v4 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.997 58 216 GO:0004372
GO:0005829
GO:0008168
GO:0019264
GO:0030170
GO:0032259
GO:0046653
AF-A0A0S8EN43-F1-model_v4 Serine hydroxymethyltransferase (SHMT) (Serine methylase) (EC 2.1.2.1) 0.9967 9 419 GO:0004372
GO:0005829
GO:0008168
GO:0019264
GO:0030170
GO:0032259
GO:0035999
AF-T0DU40-F1-model_v4 deleted 0.9965 9 416
AF-A0A410JWJ6-F1-model_v4 Serine hydroxymethyltransferase (SHMT) (Serine methylase) (EC 2.1.2.1) 0.9964 7 418 GO:0004372
GO:0005829
GO:0008168
GO:0019264
GO:0030170
GO:0032259
GO:0035999
AF-A0A6J4J4G1-F1-model_v4 Serine hydroxymethyltransferase (SHMT) (Serine methylase) (EC 2.1.2.1) 0.9963 8 415 GO:0004372
GO:0005829
GO:0008168
GO:0019264
GO:0030170
GO:0032259
GO:0035999

Feature Viewer

pLDDT pTM Quality
95 0.93 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map