F444108

General Info

Members Datasets Scaffolds Average Seq Length
438 369 210 535

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2837678835|2837682237
Length 555
Sequence LSCSVAALALGLALSASAPAFAEDAGMASAKAAEYQPDPDAKEGGAITVTYKDDVSTLDPAIGYDWQNWSMIKSLFDAMMDYVPGTTELRPALAESYEISDDGTVFTFHLRKGVKFHNGREMTADDVKYSLDRVTDSKTQSPGAGFFGSIKGYDEVASGKADGLSGVEVVDPSTVKITLSRPDATFLHVMALNFASVVPHEAVEEYGADFGHHPVGTGAFKLSDWTIGQKLTFEKNADYWRDGVPYLDQITFEIGQEPIVALLRLQKGEVDIPGDGIPPAKFQEVMADPDQKARVVEGGQLQTGYITMNVTMPPFDKKEVREAVNMAINKDRIVQMINNRAIPANQPLPPSMPGYDKSFEGYAYDPEKAKAMLAEAGFADGFSTELYVMNTDPNPRIAQAIQQDLSQIGIKADIQSLAQANVIAAGGTKDQAPMIWSGGMAWIADFPDPSNFYGPILGCAGAVPGGWNWSWYCNEDLDKEAAKADSIVDPAKADERDKMWSDIYDKVMADAPWVPIFNEQRFTMKSKRMGGADNLYVDPVHIPINYDYVYVTDVQ

Samples

Sample ID Description Type Environment
1 2510065057 Sinorhizobium meliloti WSM1022 Isolate Nodule
2 2510461069 Rhizobium sp. PDO1-076 Isolate Rhizosphere
3 2511231052 Sinorhizobium meliloti AK58 Isolate Nodule
4 2512047086 Sinorhizobium arboris LMG 14919 Isolate Nodule
5 2512875026 Sinorhizobium medicae WSM1115 Isolate Nodule
6 2513237086 Sinorhizobium meliloti MVII-I Isolate Nodule
7 2513237091 Sinorhizobium meliloti RRI128 Isolate Nodule
8 2513237140 Sinorhizobium meliloti GVPV12 Isolate Nodule
9 2513237143 Sinorhizobium meliloti Mlalz-1 Isolate Nodule
10 2513237156 Sinorhizobium medicae WSM1369 Isolate Nodule
11 2513237160 Sinorhizobium medicae WSM244 Isolate Nodule
12 2513237351 Mesorhizobium alhagi CCNWXJ12-2 Isolate Nodule
13 2515154107 Sinorhizobium meliloti 4H41 Isolate Nodule
14 2516653046 Sinorhizobium meliloti BO21CC Isolate Nodule
15 2517487022 Sinorhizobium medicae WSM4191 Isolate Nodule
16 2524023207 Ensifer sp. USDA 6670 Isolate Nodule
17 2551306084 Sinorhizobium meliloti 5A14 Isolate Nodule
18 2551306085 Sinorhizobium meliloti AE608H Isolate Nodule
19 2551306086 Sinorhizobium meliloti AK11 Isolate Nodule
20 2551306087 Sinorhizobium meliloti A0643DD Isolate Nodule
21 2551306089 Sinorhizobium meliloti 1A42 Isolate Nodule
22 2551306090 Sinorhizobium meliloti A0641M Isolate Nodule
23 2551306091 Sinorhizobium meliloti C0431A Isolate Nodule
24 2551306092 Sinorhizobium meliloti AK75 Isolate Nodule
25 2551306093 Sinorhizobium meliloti C0438LL Isolate Nodule
26 2582581299 Rhizobium leguminosarum OV483 Isolate Rhizosphere
27 2599185156 Rhizobium sp. NFR03 Isolate Rhizoplane
28 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
29 2600254933 Rhizobium sp. NFR12 Isolate Rhizoplane
30 2600255283 Pseudomonas sp. NFR16 Isolate Rhizoplane
31 2643221688 Rhizobium sp. Root482 Isolate Unclassified
32 2643221689 Rhizobium sp. Root483D2 Isolate Unclassified
33 2693429783 Mesorhizobium sp. LCM 4577 Isolate Rhizosphere
34 2693429784 Mesorhizobium sp. LCM 4576 Isolate Rhizosphere
35 2738541293 Rhizobium sp. GV031 Isolate Unclassified
36 2738543020 Pseudomonas sp. GV054 Isolate Unclassified
37 2738543021 Pseudomonas sp. GV071 Isolate Unclassified
38 2802428858 Sinorhizobium medicae M14-1 Isolate Nodule
39 2802428860 Sinorhizobium medicae M19-1 Isolate Nodule
40 2802428861 Sinorhizobium medicae USDA1037 Isolate Nodule
41 2802428862 Sinorhizobium medicae M7-4 Isolate Nodule
42 2802428863 Sinorhizobium medicae M26-2 Isolate Nodule
43 2818991272 Rhizobium sp. SLBN-4 Isolate Unclassified
44 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
45 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
46 2837678835 Jiella endophytica CBS5Q-3 Isolate Unclassified
47 2839993093 Phyllobacterium endophyticum PEPV15 Isolate Unclassified
48 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
49 2842922631 Pararhizobium sp. R-72066 Isolate Unclassified
50 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
51 2854681122 Luteovulum sphaeroides SCJ Isolate Unclassified
52 2855825444 Sinorhizobium meliloti CXM1-105 Isolate Nodule
53 2855839649 Sinorhizobium meliloti AK555 Isolate Unclassified
54 2858800743 Sinorhizobium meliloti AK170 Isolate Unclassified
55 2876377896 Mesorhizobium sp. M2C.T.Ca.TU.009.01.2.1 Isolate Nodule
56 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
57 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
58 2894817345 Aureimonas psammosilenae YIM DR1026 Isolate Unclassified
59 2899259804 Paracoccus aeridis JC501 Isolate Rhizosphere
60 2899275550 Paracoccus hibiscisoli CCTCC AB2016182 Isolate Rhizosphere
61 2915980308 Sinorhizobium medicae USDA1149 Isolate Nodule
62 2915986958 Sinorhizobium meliloti USDA1659 Isolate Nodule
63 2915993759 Sinorhizobium meliloti USDA1336 Isolate Nodule
64 2916000859 Sinorhizobium meliloti USDA1562 Isolate Nodule
65 2916007675 Sinorhizobium meliloti USDA1289 Isolate Nodule
66 2916014648 Sinorhizobium meliloti USDA1583 Isolate Nodule
67 2916021584 Sinorhizobium meliloti USDA1550 Isolate Nodule
68 2916028427 Sinorhizobium meliloti USDA1613 Isolate Nodule
69 2916035215 Sinorhizobium meliloti 3011 Isolate Nodule
70 2916041962 Sinorhizobium meliloti USDA1795 Isolate Nodule
71 2916048683 Sinorhizobium meliloti USDA1796 Isolate Nodule
72 2916055098 Sinorhizobium meliloti USDA1770 Isolate Nodule
73 2916061851 Sinorhizobium medicae USDA1638 Isolate Nodule
74 2916076590 Sinorhizobium meliloti USDA1661 Isolate Nodule
75 2917554339 Chthonobacter rhizosphaerae yh7-1 Isolate Rhizosphere
76 2919119836 Phyllobacterium sp. 1468 Isolate Rhizosphere
77 2921201388 Sinorhizobium meliloti USDA1692 Isolate Nodule
78 2921208531 Sinorhizobium meliloti USDA1660 Isolate Nodule
79 2921237296 Sinorhizobium meliloti USDA1508 Isolate Nodule
80 2921244191 Sinorhizobium meliloti 2119 Isolate Nodule
81 2921257292 Sinorhizobium meliloti USDA1320 Isolate Nodule
82 2921263974 Sinorhizobium meliloti USDA1107 Isolate Nodule
83 2921282425 Sinorhizobium meliloti USDA1203 Isolate Nodule
84 2921289301 Sinorhizobium meliloti USDA1730 Isolate Nodule
85 2921296804 Sinorhizobium meliloti USDA1200 Isolate Nodule
86 2924144063 Sinorhizobium meliloti USDA1022 Isolate Nodule
87 2924150972 Sinorhizobium meliloti USDA1700 Isolate Nodule
88 2924165586 Sinorhizobium meliloti USDA1264 Isolate Nodule
89 2924172951 Sinorhizobium meliloti USDA1626 Isolate Nodule
90 2924179722 Sinorhizobium meliloti USDA1280 Isolate Nodule
91 2924186466 Sinorhizobium meliloti USDA1389 Isolate Nodule
92 2924193448 Sinorhizobium meliloti USDA1158 Isolate Nodule
93 2924200457 Sinorhizobium meliloti USDA1007 Isolate Nodule
94 2924207177 Sinorhizobium meliloti USDA1589 Isolate Nodule
95 2924214083 Sinorhizobium meliloti USDA1702 Isolate Nodule
96 2924221636 Sinorhizobium meliloti USDA1416 Isolate Nodule
97 2924228884 Sinorhizobium meliloti USDA1581 Isolate Nodule
98 2936996657 Sinorhizobium meliloti USDA1025 Isolate Nodule
99 2937002841 Sinorhizobium meliloti USDA1006 Isolate Nodule
100 2937009748 Sinorhizobium meliloti USDA1162 Isolate Nodule
101 2937016420 Sinorhizobium meliloti USDA1027 Isolate Nodule
102 2937023124 Sinorhizobium meliloti USDA1335 Isolate Nodule
103 2937036028 Sinorhizobium medicae USDA1608 Isolate Nodule
104 2937042894 Sinorhizobium meliloti USDA1687 Isolate Nodule
105 2937049772 Sinorhizobium meliloti USDA1691 Isolate Nodule
106 2937056579 Sinorhizobium meliloti USDA1357 Isolate Nodule
107 2937063883 Sinorhizobium meliloti USDA1808 Isolate Nodule
108 2937071275 Sinorhizobium meliloti USDA1623 Isolate Nodule
109 2937084907 Sinorhizobium medicae USDA1664 Isolate Nodule
110 2937091812 Sinorhizobium meliloti USDA1221 Isolate Nodule
111 2937106411 Sinorhizobium meliloti USDA1214 Isolate Nodule
112 2937113482 Sinorhizobium meliloti USDA1180 Isolate Nodule
113 2937119839 Sinorhizobium meliloti USDA1790 Isolate Nodule
114 2937126314 Sinorhizobium meliloti USDA1612 Isolate Nodule
115 2938014810 Mesorhizobium sp. M2C.T.Ca.TU.002.02.1.1 Isolate Nodule
116 2957375807 Sinorhizobium medicae USDA1632 Isolate Nodule
117 2957382221 Sinorhizobium meliloti USDA1919 Isolate Nodule
118 2957388812 Sinorhizobium meliloti USDA1195 Isolate Nodule
119 2957395598 Sinorhizobium meliloti USDA1237 Isolate Nodule
120 2957402308 Sinorhizobium meliloti USDA1794 Isolate Nodule
121 2957408893 Sinorhizobium meliloti USDA1163 Isolate Nodule
122 2957422303 Sinorhizobium meliloti USDA1497 Isolate Nodule
123 2957430029 Sinorhizobium meliloti USDA1590 Isolate Nodule
124 2957437181 Sinorhizobium medicae USDA1694 Isolate Nodule
125 2957443900 Sinorhizobium meliloti USDA1734 Isolate Nodule
126 2957450854 Sinorhizobium meliloti USDA1655 Isolate Nodule
127 2957457609 Sinorhizobium meliloti USDA1751 Isolate Nodule
128 2957464669 Sinorhizobium meliloti USDA1520 Isolate Nodule
129 2957471148 Sinorhizobium meliloti USDA1204 Isolate Nodule
130 2957478035 Sinorhizobium meliloti USDA1171 Isolate Nodule
131 2957484790 Sinorhizobium meliloti USDA1464 Isolate Nodule
132 2957491536 Sinorhizobium meliloti USDA1804 Isolate Nodule
133 2957498199 Sinorhizobium meliloti USDA1561 Isolate Nodule
134 2957505466 Sinorhizobium meliloti USDA1696 Isolate Nodule
135 2960584000 Sinorhizobium meliloti USDA1530 Isolate Nodule
136 2960591022 Sinorhizobium medicae USDA1066 Isolate Nodule
137 2960597568 Sinorhizobium meliloti 3085 Isolate Nodule
138 2960603979 Sinorhizobium meliloti USDA1580 Isolate Nodule
139 2960610863 Sinorhizobium meliloti USDA1792 Isolate Nodule
140 2960617483 Sinorhizobium meliloti USDA1719 Isolate Nodule
141 2960624210 Sinorhizobium meliloti USDA1415 Isolate Nodule
142 2960631154 Sinorhizobium medicae USDA1629 Isolate Nodule
143 2960637947 Sinorhizobium meliloti USDA1202 Isolate Nodule
144 2960645483 Sinorhizobium meliloti USDA1703 Isolate Nodule
145 2960652885 Sinorhizobium meliloti USDA1199 Isolate Nodule
146 2960660292 Sinorhizobium meliloti USDA1883 Isolate Nodule
147 2960667422 Sinorhizobium meliloti USDA1170 Isolate Nodule
148 2960674078 Sinorhizobium meliloti USDA1666 Isolate Nodule
149 2960680706 Sinorhizobium medicae USDA1150 Isolate Nodule
150 2960687367 Sinorhizobium meliloti USDA1462 Isolate Nodule
151 2964607997 Sinorhizobium meliloti USDA1212 Isolate Nodule
152 2964615318 Sinorhizobium meliloti USDA1248 Isolate Nodule
153 2964621998 Sinorhizobium meliloti USDA1235 Isolate Nodule
154 2964628898 Sinorhizobium meliloti USDA1191 Isolate Nodule
155 2964636051 Sinorhizobium meliloti USDA1594 Isolate Nodule
156 2964643177 Sinorhizobium meliloti USDA1760 Isolate Nodule
157 2964649959 Sinorhizobium meliloti USDA1591 Isolate Nodule
158 2964656573 Sinorhizobium meliloti USDA1308 Isolate Nodule
159 2964663802 Sinorhizobium meliloti USDA1688 Isolate Nodule
160 2964670856 Sinorhizobium meliloti USDA1211 Isolate Nodule
161 2964678106 Sinorhizobium meliloti USDA1210 Isolate Nodule
162 2964685014 Sinorhizobium meliloti USDA1232 Isolate Nodule
163 2964691889 Sinorhizobium meliloti USDA1379 Isolate Nodule
164 2964698721 Sinorhizobium meliloti USDA1656 Isolate Nodule
165 2964705432 Sinorhizobium meliloti USDA1614 Isolate Nodule
166 2964712639 Sinorhizobium meliloti USDA1616 Isolate Nodule
167 2964719344 Sinorhizobium meliloti USDA1456 Isolate Nodule
168 2967664464 Sinorhizobium meliloti USDA1208 Isolate Nodule
169 2967671571 Sinorhizobium meliloti USDA1496 Isolate Nodule
170 2967678726 Sinorhizobium meliloti USDA1467 Isolate Nodule
171 2967686174 Sinorhizobium medicae USDA1641 Isolate Nodule
172 2967693043 Sinorhizobium meliloti USDA1183 Isolate Nodule
173 2967699805 Sinorhizobium meliloti USDA1695 Isolate Nodule
174 2967706974 Sinorhizobium meliloti USDA1206 Isolate Nodule
175 2967714385 Sinorhizobium meliloti USDA1023 Isolate Nodule
176 2967721400 Sinorhizobium meliloti USDA1742 Isolate Nodule
177 2967728569 Sinorhizobium medicae USDA1607 Isolate Nodule
178 2967735183 Sinorhizobium meliloti USDA1710 Isolate Nodule
179 2967742019 Sinorhizobium meliloti USDA1676 Isolate Nodule
180 2967748971 Sinorhizobium meliloti USDA1024A Isolate Nodule
181 2967755722 Sinorhizobium meliloti USDA1302 Isolate Nodule
182 2967762386 Sinorhizobium meliloti USDA1397 Isolate Nodule
183 2967769361 Sinorhizobium meliloti USDA1005 Isolate Nodule
184 2967775926 Sinorhizobium meliloti USDA1678 Isolate Nodule
185 2968128360 Mesorhizobium sp. WSM3873 Isolate Unclassified
186 2970019648 Sinorhizobium meliloti USDA1603 Isolate Nodule
187 2970026789 Sinorhizobium medicae USDA1611 Isolate Nodule
188 2970033650 Sinorhizobium meliloti USDA1565 Isolate Nodule
189 2970040964 Sinorhizobium meliloti USDA1501 Isolate Nodule
190 2970047711 Sinorhizobium meliloti USDA1793 Isolate Nodule
191 2970054988 Sinorhizobium meliloti USDA1031 Isolate Nodule
192 2970061556 Sinorhizobium meliloti USDA1810 Isolate Nodule
193 2970068827 Sinorhizobium meliloti USDA1227 Isolate Nodule
194 2970076120 Sinorhizobium meliloti USDA1706 Isolate Nodule
195 2970082768 Sinorhizobium meliloti USDA1803 Isolate Nodule
196 2970088815 Sinorhizobium meliloti USDA1819 Isolate Nodule
197 2970095765 Sinorhizobium meliloti USDA1225 Isolate Nodule
198 2970102677 Sinorhizobium meliloti USDA1325 Isolate Nodule
199 2970109326 Sinorhizobium meliloti USDA1186 Isolate Nodule
200 2970116247 Sinorhizobium meliloti USDA1566 Isolate Nodule
201 2970122695 Sinorhizobium medicae 3082 Isolate Nodule
202 2970129317 Sinorhizobium meliloti USDA1008 Isolate Nodule
203 2970136068 Sinorhizobium meliloti USDA1699 Isolate Nodule
204 2970143518 Sinorhizobium medicae USDA1652 Isolate Nodule
205 2970149975 Sinorhizobium meliloti USDA1215 Isolate Nodule
206 2970156795 Sinorhizobium meliloti USDA1491 Isolate Nodule
207 2970164137 Sinorhizobium meliloti USDA1018 Isolate Nodule
208 2970170962 Sinorhizobium meliloti USDA1571 Isolate Nodule
209 2970177841 Sinorhizobium meliloti USDA1533 Isolate Nodule
210 2970184632 Sinorhizobium meliloti USDA1593 Isolate Nodule
211 2970191845 Sinorhizobium meliloti USDA1187 Isolate Nodule
212 2977516862 Sinorhizobium meliloti USDA1791 Isolate Nodule
213 2977523885 Sinorhizobium meliloti USDA1777 Isolate Nodule
214 2977530762 Sinorhizobium medicae USDA1606 Isolate Nodule
215 2977537788 Sinorhizobium meliloti USDA1184 Isolate Nodule
216 2977544691 Sinorhizobium medicae USDA1631 Isolate Nodule
217 2977558990 Sinorhizobium meliloti USDA1222 Isolate Nodule
218 2977565890 Sinorhizobium meliloti USDA1617 Isolate Nodule
219 2977572785 Sinorhizobium meliloti USDA1767 Isolate Nodule
220 2977579622 Sinorhizobium meliloti USDA1161 Isolate Nodule
221 2989776772 Rhizobium glycinendophyticum CL12 Isolate Unclassified
222 2996336353 Mesorhizobium sp. YM1C-6-2 Isolate Unclassified
223 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
224 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
225 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
226 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
227 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
228 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
229 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
230 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
231 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
232 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
233 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
234 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
235 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
236 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
237 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
238 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
239 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
240 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
241 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
242 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
243 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
244 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
245 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
246 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
247 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
248 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
249 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
250 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
251 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
252 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
253 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
254 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
255 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
256 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
257 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
258 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
259 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
260 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
261 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
262 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
263 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
264 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
265 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
266 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
267 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
268 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
269 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
270 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
271 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
272 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
273 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
274 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
275 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
276 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
277 3300033430 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - small nodules Metagenome Nodule
278 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
279 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
280 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
281 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
282 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
283 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
284 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
285 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
286 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
287 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
288 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
289 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
290 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
291 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
292 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
293 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
294 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
295 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
296 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
297 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
298 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
299 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
300 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
301 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
302 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
303 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
304 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
305 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
306 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
307 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
308 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
309 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
310 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
311 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
312 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
313 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
314 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
315 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
316 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
317 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
318 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
319 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
320 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
321 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
322 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
323 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
324 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
325 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
326 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
327 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
328 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
329 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
330 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
331 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
332 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
333 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
334 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
335 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
336 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
337 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
338 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
339 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
340 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
341 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
342 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
343 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
344 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
345 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
346 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
347 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
348 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
349 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
350 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
351 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
352 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
353 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
354 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
355 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
356 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
357 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
358 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
359 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
360 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
361 3300053731 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere Metagenome Endosphere
362 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
363 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
364 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
365 648276728 Sinorhizobium meliloti BL225C Isolate Nodule
366 8003992118 Sinorhizobium meliloti RRI128 Isolate Nodule
367 8003999396 Sinorhizobium medicae WSM1115 Isolate Nodule
368 8045864390 Aurantimonas endophytica KCTC 52296 Isolate Unclassified
369 8056875544 Rhizobium halophilum TRM95001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 47.95
Metatranscriptomes 0
Isolates 52.05

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.42
Nodule 44.52
Rhizoplane 2.97
Rhizosphere 30.14
Stem 0
Stem Tuber 0
Unclassified 10.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1000001 3300002773 Bacteria 224104
2 JGI25152J39213_1000015 3300002773 Bacteria 120605
3 JGI25152J39213_1001254 3300002773 Bacteria 11522
4 JGI25150J39212_1000007 3300002774 Bacteria 253635
5 JGI25159J45721_1005965 3300002987 Bacteria 3733
6 JGI25151J46595_10000013 3300003187 Bacteria 253635
7 JGI25151J46595_10000547 3300003187 Bacteria 34450
8 JGI25153J46596_10000103 3300003215 Bacteria 96279
9 JGI25153J46596_10002346 3300003215 Bacteria 10965
10 JGI25160J50197_1007471 3300003354 Bacteria 4272
11 Ga0055526_1001424 3300003771 Bacteria 17026
12 Ga0055524_1005338 3300003775 Bacteria 5760
13 Ga0055528_1001613 3300003790 Bacteria 13340
14 Ga0070674_100002105 3300005356 Bacteria 10919
15 Ga0068853_100171736 3300005539 Bacteria 1962
16 Ga0070696_100084558 3300005546 Bacteria 2251
17 Ga0068854_100048542 3300005578 Bacteria 3029
18 Ga0068858_100105416 3300005842 Bacteria 2630
19 Ga0081455_10054454 3300005937 Bacteria 3409
20 Ga0081538_10011685 3300005981 Bacteria 7096
21 Ga0081538_10016767 3300005981 Bacteria 5596
22 Ga0081540_1004622 3300005983 Bacteria 10414
23 Ga0081540_1026417 3300005983 Bacteria 3314
24 Ga0075365_10028929 3300006038 Bacteria 3536
25 Ga0075364_10063032 3300006051 Bacteria 2434
26 Ga0075367_10032047 3300006178 Bacteria 3021
27 Ga0075431_100009864 3300006847 Bacteria 9588
28 Ga0075431_100016174 3300006847 Bacteria 7569
29 Ga0075434_100160668 3300006871 Bacteria 2266
30 Ga0111539_10000952 3300009094 Bacteria 37967
31 Ga0111539_10012006 3300009094 Bacteria 10861
32 Ga0114129_10011386 3300009147 Bacteria 12672
33 Ga0114129_10031964 3300009147 Bacteria 7440
34 Ga0114129_10037055 3300009147 Bacteria 6886
35 Ga0114129_10073393 3300009147 Bacteria 4767
36 Ga0105243_10073822 3300009148 Bacteria 2765
37 Ga0105248_10067798 3300009177 Bacteria 4006
38 Ga0105238_10134491 3300009551 Bacteria 2450
39 Ga0157373_10086351 3300013100 Bacteria 2211
40 Ga0207425_1000032 3300025245 Bacteria 253689
41 Ga0209148_1000684 3300025254 Bacteria 28163
42 Ga0209129_1000056 3300025258 Bacteria 253689
43 Ga0209129_1000571 3300025258 Bacteria 25391
44 Ga0209233_1000030 3300025261 Bacteria 636702
45 Ga0209455_1001978 3300025272 Bacteria 8402
46 Ga0209130_1000428 3300025284 Bacteria 45112
47 Ga0209025_1000084 3300025294 Bacteria 263812
48 Ga0209025_1000090 3300025294 Bacteria 253689
49 Ga0209564_1012602 3300025295 Bacteria 3671
50 Ga0209758_1000084 3300025297 Bacteria 256346
51 Ga0209758_1000239 3300025297 Bacteria 114761
52 Ga0209758_1004209 3300025297 Bacteria 12191
53 Ga0209256_1014476 3300025299 Bacteria 2835
54 Ga0207426_1000314 3300025302 Bacteria 94920
55 Ga0207426_1005722 3300025302 Bacteria 5599
56 Ga0207426_1023197 3300025302 Bacteria 2120
57 Ga0207646_10147309 3300025922 Bacteria 2122
58 Ga0207694_10162431 3300025924 Bacteria 1805
59 Ga0207644_10052973 3300025931 Bacteria 2919
60 Ga0207669_10001891 3300025937 Bacteria 8875
61 Ga0207703_10169012 3300026035 Bacteria 1922
62 Ga0209281_1000453 3300027111 Bacteria 58584
63 Ga0207428_10000206 3300027907 Bacteria 82022
64 Ga0268266_10052783 3300028379 Bacteria 3492
65 Ga0307515_10001330 3300028794 Bacteria 55993
66 Ga0307515_10004268 3300028794 Bacteria 29669
67 Ga0307513_10000463 3300031456 Bacteria 58389
68 Ga0307513_10068020 3300031456 Bacteria 3733
69 Ga0316576_10118647 3300031727 Bacteria 1986
70 Ga0316578_10025714 3300031728 Bacteria 3313
71 Ga0316578_10039233 3300031728 Bacteria 2735
72 Ga0307405_10001534 3300031731 Bacteria 9775
73 Ga0307412_10003936 3300031911 Bacteria 8276
74 Ga0307414_10087450 3300032004 Bacteria 2303
75 Ga0315913_1000017 3300033430 Bacteria 102835
76 Ga0316584_0022007 3300036712 Bacteria 4644
77 Ga0439453_0005619 3300041408 Bacteria 1917
78 Ga0439435_0004370 3300042436 Bacteria 3038
79 Ga0439459_0006691 3300042438 Bacteria 1928
80 Ga0466972_0033063 3300044658 Bacteria 2537
81 Ga0451576_0097407 3300045051 Bacteria 3059
82 Ga0495638_0015066 3300046460 Bacteria 5203
83 Ga0495650_0000859 3300046471 Bacteria 36499
84 Ga0495605_0000030 3300046474 Bacteria 213339
85 Ga0495607_0000075 3300046501 Bacteria 99503
86 Ga0495607_0011844 3300046501 Bacteria 5781
87 Ga0495607_0040502 3300046501 Bacteria 2773
88 Ga0495583_0001313 3300046506 Bacteria 25851
89 Ga0495583_0002125 3300046506 Bacteria 17748
90 Ga0495583_0019829 3300046506 Bacteria 3500
91 Ga0495606_0000789 3300046507 Bacteria 48426
92 Ga0495610_0002664 3300046512 Bacteria 14724
93 Ga0495610_0004843 3300046512 Bacteria 9798
94 Ga0495632_0000146 3300046519 Bacteria 72790
95 Ga0495637_0003005 3300046520 Bacteria 9048
96 Ga0495609_0000006 3300046538 Bacteria 431833
97 Ga0495609_0003087 3300046538 Bacteria 9763
98 Ga0495625_0019101 3300046660 Bacteria 5332
99 Ga0495661_0000054 3300046665 Bacteria 138979
100 Ga0495671_0001986 3300046692 Bacteria 13145
101 Ga0495649_0001523 3300046694 Bacteria 17413
102 Ga0495649_0004321 3300046694 Bacteria 9316
103 Ga0495649_0026347 3300046694 Bacteria 3233
104 Ga0495686_0009734 3300047472 Bacteria 6900
105 Ga0496100_0026221 3300048903 Bacteria 3572
106 Ga0496101_0010271 3300048904 Bacteria 6180
107 Ga0496102_0091466 3300048905 Bacteria 2816
108 Ga0496103_0041904 3300048906 Bacteria 2815
109 Ga0496107_0078663 3300048910 Bacteria 2403
110 Ga0496108_0132116 3300048911 Bacteria 2146
111 Ga0496110_0017781 3300048913 Bacteria 5950
112 Ga0496110_0039644 3300048913 Bacteria 4102
113 Ga0496111_0004346 3300048914 Bacteria 8944
114 Ga0496116_0001654 3300048919 Bacteria 24516
115 Ga0496116_0015027 3300048919 Bacteria 6140
116 Ga0496117_0010564 3300048920 Bacteria 8392
117 Ga0496118_0006782 3300048921 Bacteria 12445
118 Ga0496118_0008221 3300048921 Bacteria 10828
119 Ga0496118_0103076 3300048921 Bacteria 1921
120 Ga0496119_0003560 3300048922 Bacteria 16082
121 Ga0496119_0010872 3300048922 Bacteria 7606
122 Ga0496121_0018166 3300048924 Bacteria 7109
123 Ga0496121_0030051 3300048924 Bacteria 5001
124 Ga0496122_0003433 3300048925 Bacteria 20846
125 Ga0496122_0010880 3300048925 Bacteria 9311
126 Ga0496122_0015992 3300048925 Bacteria 7135
127 Ga0496122_0044375 3300048925 Bacteria 3470
128 Ga0496123_0011436 3300048926 Bacteria 7690
129 Ga0496123_0027915 3300048926 Bacteria 4190
130 Ga0496123_0037827 3300048926 Bacteria 3402
131 Ga0496124_0000047 3300048927 Bacteria 285554
132 Ga0496124_0000200 3300048927 Bacteria 117910
133 Ga0496124_0003345 3300048927 Bacteria 19735
134 Ga0496124_0074564 3300048927 Bacteria 2804
135 Ga0496125_0002881 3300048928 Bacteria 21656
136 Ga0496125_0011789 3300048928 Bacteria 8711
137 Ga0496126_0012477 3300048929 Bacteria 8702
138 Ga0501032_0016513 3300049569 Bacteria 5191
139 Ga0501033_0041076 3300049570 Bacteria 3452
140 Ga0501034_0104770 3300049571 Bacteria 2822
141 Ga0501036_0011303 3300049572 Bacteria 7386
142 Ga0501036_0026568 3300049572 Bacteria 4888
143 Ga0501037_0011238 3300049573 Bacteria 6591
144 Ga0501038_0004675 3300049574 Bacteria 12746
145 Ga0501038_0034732 3300049574 Bacteria 4432
146 Ga0501038_0095418 3300049574 Bacteria 2484
147 Ga0501040_0005886 3300049576 Bacteria 7937
148 Ga0501042_0004941 3300049578 Bacteria 8537
149 Ga0501043_0004704 3300049579 Bacteria 11064
150 Ga0501043_0049673 3300049579 Bacteria 3298
151 Ga0501046_0008809 3300049580 Bacteria 8764
152 Ga0501047_0017761 3300049581 Bacteria 6816
153 Ga0501047_0052290 3300049581 Bacteria 3948
154 Ga0501047_0139849 3300049581 Bacteria 2300
155 Ga0501048_0011985 3300049582 Bacteria 6462
156 Ga0501067_0010989 3300049583 Bacteria 5013
157 Ga0501068_0032750 3300049584 Bacteria 3091
158 Ga0501069_0001276 3300049585 Bacteria 12340
159 Ga0501070_0007374 3300049586 Bacteria 9340
160 Ga0501070_0026327 3300049586 Bacteria 4881
161 Ga0501070_0108987 3300049586 Bacteria 2288
162 Ga0501070_0157943 3300049586 Bacteria 1870
163 Ga0501071_0022618 3300049587 Bacteria 4384
164 Ga0501073_0005532 3300049589 Bacteria 9459
165 Ga0501073_0027098 3300049589 Bacteria 4102
166 Ga0501074_0022411 3300049590 Bacteria 4588
167 Ga0501074_0030855 3300049590 Bacteria 3883
168 Ga0501075_0001505 3300049591 Bacteria 15190
169 Ga0501076_0040960 3300049592 Bacteria 3642
170 Ga0501077_0010650 3300049593 Bacteria 5726
171 Ga0501077_0038691 3300049593 Bacteria 3038
172 Ga0501079_0002933 3300049741 Bacteria 12459
173 Ga0501080_0014932 3300049742 Bacteria 7149
174 Ga0501080_0057993 3300049742 Bacteria 3605
175 Ga0501080_0105946 3300049742 Bacteria 2606
176 Ga0501081_0012731 3300049743 Bacteria 5533
177 Ga0501083_0003844 3300049744 Bacteria 10545
178 Ga0501083_0022705 3300049744 Bacteria 4353
179 Ga0501083_0099655 3300049744 Bacteria 1916
180 Ga0501035_0006110 3300049822 Bacteria 11335
181 Ga0501044_0133463 3300049823 Bacteria 2475
182 Ga0501045_0002827 3300049824 Bacteria 11850
183 nmdc:mga00v17_61392_c1 3300050491 Bacteria 2310
184 nmdc:mga0yw44_10430_c2 3300050492 Bacteria 3377
185 nmdc:mga0yw44_32810_c1 3300050492 Bacteria 3029
186 nmdc:mga06z11_5752_c1 3300050494 Bacteria 4998
187 nmdc:mga05p37_112652_c1 3300050507 Bacteria 3345
188 nmdc:mga05p37_22941_c1 3300050507 Bacteria 7570
189 nmdc:mga05p37_254141_c1 3300050507 Bacteria 2106
190 nmdc:mga06r32_20623_c1 3300050510 Bacteria 6071
191 nmdc:mga06r32_82248_c1 3300050510 Bacteria 3137
192 nmdc:mga08y16_16_c1 3300050511 Bacteria 386948
193 Ga0500643_012193 3300053087 Bacteria 3088
194 Ga0500555_002188 3300053103 Bacteria 5719
195 Ga0500595_001316 3300053119 Bacteria 13455
196 Ga0500608_006772 3300053122 Bacteria 4696
197 Ga0500559_0006013 3300053136 Bacteria 5510
198 Ga0500568_0000057 3300053139 Bacteria 109287
199 Ga0500568_0005622 3300053139 Bacteria 6456
200 Ga0500568_0027456 3300053139 Bacteria 2380
201 Ga0500604_0002905 3300053151 Bacteria 4637
202 Ga0500616_0005692 3300053153 Bacteria 8399
203 Ga0500627_0024433 3300053158 Bacteria 2473
204 Ga0500609_000107 3300053731 Bacteria 10890
205 Ga0500609_000893 3300053731 Bacteria 4472
206 Ga0501084_0032766 3300054114 Bacteria 4348
207 Ga0501082_0000904 3300060353 Bacteria 26090
208 Ga0501082_0024510 3300060353 Bacteria 5200
209 Ga0501082_0093034 3300060353 Bacteria 2604
210 Ga0530510_0002971 3300061734 Bacteria 11630

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2513237156 2513984564 443
2 3300045051 Ga0451576_0097407 Ga0451576_0097407_1605_3035 472
3 3300046694 Ga0495649_0001523 Ga0495649_0001523_15982_17403 472
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27 3300025302 Ga0207426_1023197 Ga0207426_10231972 520
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37 3300044658 Ga0466972_0033063 Ga0466972_0033063_473_2092 522
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239 3300005983 Ga0081540_1026417 Ga0081540_10264172 525
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313 3300060353 Ga0501082_0000904 Ga0501082_0000904_8448_10064 529
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360 3300027907 Ga0207428_10000206 Ga0207428_1000020657 530
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366 3300046501 Ga0495607_0000075 Ga0495607_0000075_69186_70793 530
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369 3300046506 Ga0495583_0019829 Ga0495583_0019829_611_2245 530
370 3300046507 Ga0495606_0000789 Ga0495606_0000789_31643_33265 530
371 3300046512 Ga0495610_0002664 Ga0495610_0002664_5088_6722 530
372 3300046519 Ga0495632_0000146 Ga0495632_0000146_61701_63335 530
373 3300046520 Ga0495637_0003005 Ga0495637_0003005_5191_6825 530
374 3300046538 Ga0495609_0003087 Ga0495609_0003087_7028_8635 530
375 3300046660 Ga0495625_0019101 Ga0495625_0019101_2200_3822 530
376 3300046665 Ga0495661_0000054 Ga0495661_0000054_105699_107333 530
377 3300046692 Ga0495671_0001986 Ga0495671_0001986_10145_11767 530
378 3300046694 Ga0495649_0026347 Ga0495649_0026347_144_1766 530
379 3300048903 Ga0496100_0026221 Ga0496100_0026221_735_2360 530
380 3300048905 Ga0496102_0091466 Ga0496102_0091466_974_2599 530
381 3300048906 Ga0496103_0041904 Ga0496103_0041904_211_1836 530
382 3300048910 Ga0496107_0078663 Ga0496107_0078663_491_2116 530
383 3300048911 Ga0496108_0132116 Ga0496108_0132116_310_1935 530
384 3300048913 Ga0496110_0039644 Ga0496110_0039644_2401_4026 530
385 3300048921 Ga0496118_0103076 Ga0496118_0103076_64_1689 530
386 3300048925 Ga0496122_0044375 Ga0496122_0044375_1793_3418 530
387 3300048926 Ga0496123_0037827 Ga0496123_0037827_174_1799 530
388 3300048927 Ga0496124_0000047 Ga0496124_0000047_142053_143660 530
389 3300048928 Ga0496125_0002881 Ga0496125_0002881_6597_8222 530
390 3300050491 nmdc:mga00v17_61392_c1 nmdc:mga00v17_61392_c1_447_2084 530
391 3300050492 nmdc:mga0yw44_32810_c1 nmdc:mga0yw44_32810_c1_978_2621 530
392 3300053139 Ga0500568_0000057 Ga0500568_0000057_6300_7946 530
393 iso_pu_bacteria 2894817345 2894821400 530
394 3300005981 Ga0081538_10011685 Ga0081538_100116854 531
395 3300049586 Ga0501070_0157943 Ga0501070_0157943_140_1780 531
396 3300002773 JGI25152J39213_1000001 JGI25152J39213_100000169 533
397 3300002773 JGI25152J39213_1000015 JGI25152J39213_100001539 533
398 3300002774 JGI25150J39212_1000007 JGI25150J39212_1000007163 533
399 3300003187 JGI25151J46595_10000013 JGI25151J46595_10000013164 533
400 3300003215 JGI25153J46596_10002346 JGI25153J46596_100023467 533
401 3300005983 Ga0081540_1004622 Ga0081540_10046225 533
402 3300006178 Ga0075367_10032047 Ga0075367_100320473 533
403 3300013100 Ga0157373_10086351 Ga0157373_100863511 533
404 3300025245 Ga0207425_1000032 Ga0207425_1000032160 533
405 3300025258 Ga0209129_1000056 Ga0209129_1000056160 533
406 3300025294 Ga0209025_1000090 Ga0209025_1000090160 533
407 3300025297 Ga0209758_1000084 Ga0209758_1000084160 533
408 3300028794 Ga0307515_10001330 Ga0307515_1000133057 533
409 3300028794 Ga0307515_10004268 Ga0307515_1000426820 533
410 3300031456 Ga0307513_10000463 Ga0307513_1000046341 533
411 3300031731 Ga0307405_10001534 Ga0307405_100015346 533
412 3300031911 Ga0307412_10003936 Ga0307412_100039367 533
413 3300046506 Ga0495583_0002125 Ga0495583_0002125_15612_17231 533
414 3300046512 Ga0495610_0004843 Ga0495610_0004843_1641_3260 533
415 3300047472 Ga0495686_0009734 Ga0495686_0009734_4933_6552 533
416 3300048904 Ga0496101_0010271 Ga0496101_0010271_2543_4144 533
417 3300048913 Ga0496110_0017781 Ga0496110_0017781_1460_3079 533
418 3300048914 Ga0496111_0004346 Ga0496111_0004346_3859_5478 533
419 3300048919 Ga0496116_0001654 Ga0496116_0001654_16342_17943 533
420 3300048919 Ga0496116_0015027 Ga0496116_0015027_201_1802 533
421 3300048920 Ga0496117_0010564 Ga0496117_0010564_6280_7881 533
422 3300048921 Ga0496118_0006782 Ga0496118_0006782_1536_3137 533
423 3300048921 Ga0496118_0008221 Ga0496118_0008221_5251_6852 533
424 3300048922 Ga0496119_0010872 Ga0496119_0010872_3614_5215 533
425 3300048924 Ga0496121_0018166 Ga0496121_0018166_2201_3802 533
426 3300048925 Ga0496122_0003433 Ga0496122_0003433_15374_16993 533
427 3300048925 Ga0496122_0010880 Ga0496122_0010880_4224_5825 533
428 3300048925 Ga0496122_0015992 Ga0496122_0015992_1518_3119 533
429 3300048926 Ga0496123_0011436 Ga0496123_0011436_3004_4605 533
430 3300048926 Ga0496123_0027915 Ga0496123_0027915_1822_3441 533
431 3300048927 Ga0496124_0000200 Ga0496124_0000200_91950_93551 533
432 3300048927 Ga0496124_0003345 Ga0496124_0003345_4329_5930 533
433 3300048928 Ga0496125_0011789 Ga0496125_0011789_5972_7573 533
434 3300048929 Ga0496126_0012477 Ga0496126_0012477_4491_6092 533
435 3300050492 nmdc:mga0yw44_10430_c2 nmdc:mga0yw44_10430_c2_229_1845 533
436 3300050494 nmdc:mga06z11_5752_c1 nmdc:mga06z11_5752_c1_418_2019 533
437 3300053122 Ga0500608_006772 Ga0500608_006772_66_1685 533
438 3300053136 Ga0500559_0006013 Ga0500559_0006013_415_2034 533

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00496

SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

88

463

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
8upi-assembly1.cif.gz_A structure of a periplasmic peptide binding protein from mesorhizobium sp. ap09 bound to aminoserine 0.9838 25 533
8upi-assembly1.cif.gz_A structure of a periplasmic peptide binding protein from mesorhizobium sp. ap09 bound to aminoserine 0.98 25 533
6hlx-assembly1.cif.gz_A structure of the pbp agaa in complex with agropinic acid from a.tumefacien r10 0.9273 28 533
1b52-assembly1.cif.gz_A oligo-peptide binding protein (oppa) complexed with ktk 0.915 25 532
6hlx-assembly1.cif.gz_A structure of the pbp agaa in complex with agropinic acid from a.tumefacien r10 0.9128 28 533
ID Description Score Start End Superfamily
4oetA02 Alpha Beta;Alpha-Beta Complex;Dipeptide-binding Protein; domain 1;Dipeptide-binding Protein; Domain 1 0.9539 58 186 3.90.76.10
af_I6X811_32_267_3.40.190.10 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9305 27 252 3.40.190.10
6hlxA02 Alpha Beta;Alpha-Beta Complex;Dipeptide-binding Protein; domain 1;Dipeptide-binding Protein; Domain 1 0.9303 35 198 3.90.76.10
af_Q46863_65_184_3.90.76.10 Alpha Beta;Alpha-Beta Complex;Dipeptide-binding Protein; domain 1;Dipeptide-binding Protein; Domain 1 0.9229 59 173 3.90.76.10
6hlxA02 Alpha Beta;Alpha-Beta Complex;Dipeptide-binding Protein; domain 1;Dipeptide-binding Protein; Domain 1 0.9184 35 198 3.90.76.10
ID Description Score Start End GO Terms
AF-R8RTU4-F1-model_v4 deleted 0.9441 41 221
AF-A0A1Z8UID3-F1-model_v4 Peptide ABC transporter substrate-binding protein 0.9403 35 177 GO:0015833
GO:0030313
GO:1904680
AF-A0A1L5JS00-F1-model_v4 2,4,6-tribromophenol dehalogenase 0.9392 33 193 GO:0015833
GO:0030313
GO:1904680
AF-A0A401FI12-F1-model_v4 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA 0.9296 35 169 GO:0015833
GO:0030313
GO:1904680
AF-A0A0M1UVP9-F1-model_v4 deleted 0.9271 25 252

Feature Viewer

pLDDT pTM Quality
89.16 0.87 High
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Predicted Structure (AlphaFold2)

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