F414540

General Info

Members Datasets Scaffolds Average Seq Length
340 274 162 1039

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2585427526|2585525069
Length 1248
Sequence VISWSAHNLVLIFVGAALAVAGGIYALRSLPLDAIPDLSDIQVIVYTEYPGQAPQVVEDQVTYPLTTSMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDPYWARSRVLEYLNAASSRLPQGVTPTLGPDATGVGWVYQYAVVAKNLSLAELRSIQDWVVRFGVSKSEGVSEVASVGGFVKQYSIVVDPSRLKAQGVSLNDIAAAVRASNTDVGGRTVELSEFEYMVRGRGYLKGINDIENIVLKSQNGIPLRLGDVARIELVPDERRGITELNGEGEVASGIVLQRFGSNALTVIENAKKSLDTVKNSLPAGTEIVPVYDRSTLIESAIETLKGTLIEESIVVALVTLAFLLHVRSALVAIIMLPVGILIAFIAMKLLGIGANIMSLGGIAIAIGAMIDAAIVMIENAHKHLERAPPDKPRLEILVEAASEVGPALFFSLLIITVSFLPIFTLESQEGRLFGPLAFTKTFSMAAAAFLSVTLVPALMILFVRGRIVPEHKNPLNRFLIWIYRPVIAGVLRVKTLTILAAIAILAVTVWPVQHIGSEFMPNLDEGTLMYMPTTLPGISVTKAAELMQTQDRIIKSFPEVQSVFGKAGRALTATDPAPTEMFETIITLKPKSEWRPGVTTDSLKQEMDAALQFPGVSNAWTMPIRARIDMLSTGIRTPVGVKVYGTDLGEMEKVARQIEGVLKTIPGTSSAYAERVIGGYYLDIIPDRTALGRYGVTVNDVQEVIGMALGSEVVTQTVEGRERYGVAIRYPRASRSDAQAIARDVQISLPGGGTVPLGEVADVKLTRGATTIRTENGQLAVYIFVDIANRDLGGYVAEAQQAVARSVKMPAGYSVAWSGQFEYLERAKARLAVVVPLTLALIFLLLYLNFKALTETLIVMLSLPFALVGGIWLMWWLGFNASVAVAVGFIALAGVAAETGVIMLIYLDHAMKEQREACAAEKRPFTKIDLSRAIMVGAVERVRPKMMTVVAIMAGLVPILWRTGTGSEIMQRIAVPMIGGMVSSTLLTLIVIPAVYGLVKGWRLPSTVEIVEEADSERGGRMKGGCDDERYDGQRHDVGHGSRGSSRVRPGRPRDRGADQVSVLPLRHAPASWSVAPRRGRLKPARRCGLCLTHFSVILSVAMERWSTRRFVALFLAVFVAAGMSLSAAQATSMSMKMAMVSDMTGSMHDGCPGCPNGGGDDGIKAMACGVVCTTPVFAVLPEGVSVPLVQRPVPLPVRDSFLHGTRTPSDPYPPRTTDIG

Samples

Sample ID Description Type Environment
1 2507262055 Bradyrhizobium sp. WSM1417 Isolate Nodule
2 2510917028 Rhizobium sp. CF122 Isolate Rhizosphere
3 2512047086 Sinorhizobium arboris LMG 14919 Isolate Nodule
4 2513237084 Rhizobium leguminosarum bv. viciae UPM1131 Isolate Nodule
5 2513237085 Rhizobium leguminosarum bv. viciae UPM1137 Isolate Nodule
6 2513237143 Sinorhizobium meliloti Mlalz-1 Isolate Nodule
7 2513237144 Rhizobium sullae WSM1592 Isolate Nodule
8 2513237305 Mesorhizobium amorphae CCNWGS0123 Isolate Nodule
9 2515075009 Rhizobium leguminosarum bv. viciae 248 Isolate Nodule
10 2516143018 Ensifer sp. BR816 Isolate Nodule
11 2516653046 Sinorhizobium meliloti BO21CC Isolate Nodule
12 2551306089 Sinorhizobium meliloti 1A42 Isolate Nodule
13 2582581298 Rhizobium alamii YR540 Isolate Rhizosphere
14 2582581299 Rhizobium leguminosarum OV483 Isolate Rhizosphere
15 2582581306 Rhizobium sp. YR295 Isolate Rhizosphere
16 2582581315 Agrobacterium rhizogenes YR147 Isolate Rhizosphere
17 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
18 2582581865 Rhizobium sp. CF258 Isolate Rhizosphere
19 2585427526 Rhizobium leguminosarum OV152 Isolate Rhizosphere
20 2585427529 Rhizobium alamii YR584 Isolate Rhizosphere
21 2595698237 Methylobacterium sp. UNCCL125 Isolate Unclassified
22 2599185352 Sinorhizobium sp. NFACC03 Isolate Rhizoplane
23 2617270742 Rhizobium miluonense HAMBI 2971 Isolate Nodule
24 2643221550 Mesorhizobium sp. Root552 Isolate Unclassified
25 2643221558 Rhizobium sp. Root149 Isolate Unclassified
26 2643221568 Rhizobium sp. Root564 Isolate Unclassified
27 2643221651 Afipia sp. Root123D2 Isolate Unclassified
28 2690316117 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
29 2718218233 Rhizobium phaseoli sv. phaseoli R744 Isolate Nodule
30 2718218269 Rhizobium phaseoli sv. phaseoli N671 Isolate Nodule
31 2721755686 Mesorhizobium amorphae CCNWGS0123 Isolate Nodule
32 2721755819 Rhizobium phaseoli sv. phaseoli N771 Isolate Nodule
33 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
34 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
35 2767802442 Phyllobacterium brassicacearum 29-15 Isolate Rhizoplane
36 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
37 2775506902 Phyllobacterium zundukense Tri-48 Isolate Unclassified
38 2775506904 Phyllobacterium zundukense Tri-38 Isolate Unclassified
39 2775507266 Rhizobium tropici PRF 81 Isolate Nodule
40 2791355094 Sinorhizobium sp. BJ1 Isolate Nodule
41 2791355262 Rhizobium sp. M1 Isolate Nodule
42 2802428858 Sinorhizobium medicae M14-1 Isolate Nodule
43 2802428861 Sinorhizobium medicae USDA1037 Isolate Nodule
44 2802428862 Sinorhizobium medicae M7-4 Isolate Nodule
45 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
46 2829745981 Methylorubrum rhodinum DSM 2163 Isolate Rhizosphere
47 2838029111 Rhizobium tropici SEMIA 4079 Isolate Nodule
48 2838729681 Rhizobium leguminosarum SEMIA 445 Isolate Nodule
49 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
50 2838742623 Rhizobium leguminosarum SEMIA 449 Isolate Nodule
51 2841734538 Mesorhizobium sp. M6A.T.Cr.TU.016.01.1.1 Isolate Nodule
52 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
53 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
54 2842163707 Rhizobium leguminosarum SEMIA 460 Isolate Nodule
55 2842243621 Rhizobium leguminosarum SEMIA 483 Isolate Nodule
56 2842257432 Rhizobium leguminosarum SEMIA 485 Isolate Nodule
57 2842475841 Rhizobium tropici SEMIA 4059 Isolate Nodule
58 2842502639 Rhizobium tropici SEMIA 4063 Isolate Nodule
59 2842698319 Methylobacterium sp. R-72139 Isolate Unclassified
60 2847417321 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
61 2852387548 Rhizobium jaguaris CCGE525 Isolate Unclassified
62 2856342000 Mesorhizobium sp. M5C.F.Cr.IN.023.01.1.1 Isolate Nodule
63 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
64 2871474448 Mesorhizobium sp. M6A.T.Cr.TU.017.01.1.1 Isolate Nodule
65 2879099564 Bradyrhizobium japonicum UBMA197 Isolate Nodule
66 2882456835 Microvirga sp. KLBC 81 Isolate Unclassified
67 2882632389 Mesorhizobium waimense ICMP19557 Isolate Unclassified
68 2884298095 Microvirga thermotolerans HR1 Isolate Rhizosphere
69 2889306138 Methylobacterium sp. PvR107 Isolate Rhizosphere
70 2894817345 Aureimonas psammosilenae YIM DR1026 Isolate Unclassified
71 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
72 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
73 2896384573 Ensifer sp. MPMI2T Isolate Unclassified
74 2902330777 Methylobacterium sp. 2A Isolate Unclassified
75 2902405164 Methylobacterium sp. P1-11 Isolate Unclassified
76 2903768456 Bradyrhizobium sp. Leo121 Isolate Unclassified
77 2909042592 Labrys sp. LIt4 Isolate Nodule
78 2913295892 Sinorhizobium kostiensis DSM 13372 Isolate Nodule
79 2916000859 Sinorhizobium meliloti USDA1562 Isolate Nodule
80 2916041962 Sinorhizobium meliloti USDA1795 Isolate Nodule
81 2916048683 Sinorhizobium meliloti USDA1796 Isolate Nodule
82 2916076590 Sinorhizobium meliloti USDA1661 Isolate Nodule
83 2917699015 Bosea sp. F3-2 Isolate Rhizosphere
84 2921208531 Sinorhizobium meliloti USDA1660 Isolate Nodule
85 2921237296 Sinorhizobium meliloti USDA1508 Isolate Nodule
86 2921257292 Sinorhizobium meliloti USDA1320 Isolate Nodule
87 2924165586 Sinorhizobium meliloti USDA1264 Isolate Nodule
88 2924179722 Sinorhizobium meliloti USDA1280 Isolate Nodule
89 2924193448 Sinorhizobium meliloti USDA1158 Isolate Nodule
90 2924754689 Mesorhizobium sp. M5C.F.Ca.IN.020.32.2.1 Isolate Nodule
91 2929615660 Bradyrhizobium japonicum TXVA Isolate Nodule
92 2929624759 Bradyrhizobium japonicum TXEA Isolate Nodule
93 2932784394 Bradyrhizobium sp. S3.2.12 Isolate Nodule
94 2932809354 Bradyrhizobium sp. S3.5.5 Isolate Nodule
95 2932818245 Bradyrhizobium sp. S3.9.1 Isolate Nodule
96 2932828146 Bradyrhizobium sp. S3.9.2 Isolate Nodule
97 2933577622 Bradyrhizobium japonicum SEMIA 417 Isolate Nodule
98 2935638405 Bradyrhizobium sp. JR19.8 Isolate Nodule
99 2935665750 Bradyrhizobium sp. JR7.2 Isolate Nodule
100 2935675223 Bradyrhizobium sp. LA2.1 Isolate Nodule
101 2935684952 Bradyrhizobium sp. LA3.X Isolate Nodule
102 2935703347 Bradyrhizobium sp. LA6.10 Isolate Nodule
103 2935713505 Bradyrhizobium sp. LA6.12 Isolate Nodule
104 2935722832 Bradyrhizobium sp. LA6.3 Isolate Nodule
105 2935732158 Bradyrhizobium sp. LA6.4 Isolate Nodule
106 2935741537 Bradyrhizobium sp. LA6.7 Isolate Nodule
107 2935750917 Bradyrhizobium sp. LA6.8 Isolate Nodule
108 2935760218 Bradyrhizobium sp. LA7.1 Isolate Nodule
109 2935801545 Bradyrhizobium sp. RT10b Isolate Nodule
110 2935810662 Bradyrhizobium sp. RT3a Isolate Nodule
111 2935819856 Bradyrhizobium sp. RT3b Isolate Nodule
112 2935827899 Bradyrhizobium sp. RT4a Isolate Nodule
113 2935837841 Bradyrhizobium sp. RT4b Isolate Nodule
114 2935847175 Bradyrhizobium sp. RT5a Isolate Nodule
115 2935864058 Bradyrhizobium sp. RT9a Isolate Nodule
116 2935873716 Bradyrhizobium sp. RT9b Isolate Nodule
117 2935916978 Bradyrhizobium sp. F1.13.3 Isolate Nodule
118 2935992306 Bradyrhizobium sp. I1.7.5 Isolate Nodule
119 2936002035 Bradyrhizobium sp. I1.8.5 Isolate Nodule
120 2936037263 Bradyrhizobium sp. JR18.2 Isolate Nodule
121 2936367885 Rhizobium changzhiense WYCCWR 11290 Isolate Nodule
122 2937009748 Sinorhizobium meliloti USDA1162 Isolate Nodule
123 2937016420 Sinorhizobium meliloti USDA1027 Isolate Nodule
124 2937023124 Sinorhizobium meliloti USDA1335 Isolate Nodule
125 2937119839 Sinorhizobium meliloti USDA1790 Isolate Nodule
126 2937822353 Mesorhizobium neociceri CCANP35 Isolate Nodule
127 2940556831 Bradyrhizobium sp. LA8.1 Isolate Nodule
128 2941538514 Bradyrhizobium sp. RT11b Isolate Nodule
129 2957382221 Sinorhizobium meliloti USDA1919 Isolate Nodule
130 2957395598 Sinorhizobium meliloti USDA1237 Isolate Nodule
131 2957402308 Sinorhizobium meliloti USDA1794 Isolate Nodule
132 2957408893 Sinorhizobium meliloti USDA1163 Isolate Nodule
133 2957415311 Sinorhizobium meliloti USDA1724 Isolate Nodule
134 2957457609 Sinorhizobium meliloti USDA1751 Isolate Nodule
135 2957491536 Sinorhizobium meliloti USDA1804 Isolate Nodule
136 2958071322 Mesorhizobium sp. M6A.T.Ce.TU.016.01.1.1 Isolate Nodule
137 2960610863 Sinorhizobium meliloti USDA1792 Isolate Nodule
138 2960617483 Sinorhizobium meliloti USDA1719 Isolate Nodule
139 2960687367 Sinorhizobium meliloti USDA1462 Isolate Nodule
140 2964615318 Sinorhizobium meliloti USDA1248 Isolate Nodule
141 2964712639 Sinorhizobium meliloti USDA1616 Isolate Nodule
142 2967721400 Sinorhizobium meliloti USDA1742 Isolate Nodule
143 2967735183 Sinorhizobium meliloti USDA1710 Isolate Nodule
144 2967742019 Sinorhizobium meliloti USDA1676 Isolate Nodule
145 2967755722 Sinorhizobium meliloti USDA1302 Isolate Nodule
146 2970076120 Sinorhizobium meliloti USDA1706 Isolate Nodule
147 2970095765 Sinorhizobium meliloti USDA1225 Isolate Nodule
148 2970102677 Sinorhizobium meliloti USDA1325 Isolate Nodule
149 2970170962 Sinorhizobium meliloti USDA1571 Isolate Nodule
150 2970489779 Mesorhizobium sp. M7A.F.Ca.US.008.03.1.1 Isolate Nodule
151 2970524798 Mesorhizobium sp. M5C.F.Ca.ET.164.01.1.1 Isolate Nodule
152 2977516862 Sinorhizobium meliloti USDA1791 Isolate Nodule
153 2977523885 Sinorhizobium meliloti USDA1777 Isolate Nodule
154 2977537788 Sinorhizobium meliloti USDA1184 Isolate Nodule
155 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified
156 3005409236 Rhizobium sp. P32RR-XVIII Isolate Rhizosphere
157 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
158 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
159 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
160 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
161 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
162 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
163 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
164 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
165 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
166 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
167 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
168 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
169 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
170 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
171 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
172 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
173 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
174 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
175 3300009765 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule Metagenome Nodule
176 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
177 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
178 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
179 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
180 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
181 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
182 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
183 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
184 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
185 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
186 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
187 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
188 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
189 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
190 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
191 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
192 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
193 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
194 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
195 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
196 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
197 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
198 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
199 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
200 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
201 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
202 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
203 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
204 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
205 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
206 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
207 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
208 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
209 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
210 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
211 3300031967 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules Metagenome Nodule
212 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
213 3300033430 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - small nodules Metagenome Nodule
214 3300033464 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - branched nodules Metagenome Nodule
215 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
216 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
217 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
218 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
219 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
220 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
221 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
222 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
223 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
224 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
225 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
226 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
227 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
228 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
229 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
230 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
231 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
232 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
233 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
234 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
235 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
236 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
237 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
238 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
239 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
240 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
241 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
242 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
243 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
244 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
245 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
246 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
247 3300053105 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere Metagenome Endosphere
248 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
249 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
250 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
251 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
252 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
253 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
254 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
255 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
256 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
257 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
258 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule
259 643692032 Sinorhizobium fredii NGR234 Isolate Nodule
260 8004633249 Mesorhizobium sp. M6A.T.Ce.TU.002.03.1.1 Isolate Nodule
261 8005301065 Rhizobium bangladeshense 1017 Isolate Nodule
262 8005376324 Rhizobium changzhiense WYCCWR 11279 Isolate Nodule
263 8005460587 Rhizobium leguminosarum bv. viciae 248 Isolate Nodule
264 8005619151 Rhizobium phaseoli CCGM2 Isolate Unclassified
265 8005688590 Rhizobium bangladeshense 1024 Isolate Nodule
266 8016511872 Bradyrhizobium sp. S3.14.4 Isolate Nodule
267 8018127388 Rhizobium aegyptiacum 950 Isolate Nodule
268 8018176218 Rhizobium sp. N122 Isolate Nodule
269 8019597564 Bradyrhizobium sp. i1.3.6 Isolate Nodule
270 8049293176 Ensifer alkalisoli YIC4027 Isolate Nodule
271 8054558443 Rhizobium alarense TRM95111 Isolate Nodule
272 8055617313 Mesorhizobium onobrychidis OM4 Isolate Nodule
273 8055742211 Bradyrhizobium japonicum 5038 Isolate Nodule
274 8057575449 Rhizobium mayense CCGE526 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 47.65
Metatranscriptomes 0
Isolates 52.35

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.12
Nodule 42.35
Rhizoplane 2.06
Rhizosphere 30.59
Stem 0
Stem Tuber 0
Unclassified 10.88

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25162J39368_1000481 3300002737 Bacteria 30539
2 JGI25152J39213_1000158 3300002773 Bacteria 46003
3 JGI25159J45721_1000002 3300002987 Bacteria 289163
4 JGI25165J46597_1001127 3300003214 Bacteria 16791
5 JGI25153J46596_10000022 3300003215 Bacteria 251919
6 JGI25153J46596_10000242 3300003215 Bacteria 46003
7 JGI25153J46596_10000524 3300003215 Bacteria 24116
8 JGI25160J50197_1000008 3300003354 Bacteria 289163
9 JGI25160J50197_1000724 3300003354 Bacteria 18123
10 JGI25161J50226_1000479 3300003374 Bacteria 18123
11 JGI25161J50226_1001914 3300003374 Bacteria 5768
12 Ga0055526_1001192 3300003771 Bacteria 18810
13 Ga0055543_1000027 3300004625 Bacteria 136033
14 Ga0055543_1000665 3300004625 Bacteria 18161
15 Ga0065165_1000015 3300005262 Bacteria 289201
16 Ga0065165_1002111 3300005262 Bacteria 18161
17 Ga0070695_100008788 3300005545 Bacteria 6003
18 Ga0070665_100003035 3300005548 Bacteria 18090
19 Ga0081455_10000017 3300005937 Bacteria 174550
20 Ga0081455_10005510 3300005937 Bacteria 13875
21 Ga0075367_10002651 3300006178 Bacteria 8239
22 Ga0075431_100017980 3300006847 Bacteria 7189
23 Ga0079104_1000123 3300006946 Bacteria 111052
24 Ga0079104_1000159 3300006946 Bacteria 95944
25 Ga0079104_1002442 3300006946 Bacteria 10037
26 Ga0105240_10039319 3300009093 Bacteria 6059
27 Ga0105238_10003388 3300009551 Bacteria 15909
28 Ga0123341_1012395 3300009765 Bacteria 7714
29 Ga0123342_1009900 3300009766 Bacteria 11153
30 Ga0157369_10000848 3300013105 Bacteria 39040
31 Ga0171462_1027 3300013250 Bacteria 113319
32 Ga0214542_1000700 3300021321 Bacteria 63279
33 Ga0214543_1000016 3300021327 Bacteria 295257
34 Ga0209436_101135 3300025208 Bacteria 9866
35 Ga0209437_100023 3300025233 Bacteria 614195
36 Ga0207425_1000076 3300025245 Bacteria 106313
37 Ga0209148_1001232 3300025254 Bacteria 14323
38 Ga0209129_1000295 3300025258 Bacteria 46972
39 Ga0209233_1000219 3300025261 Bacteria 104797
40 Ga0209455_1002738 3300025272 Bacteria 6617
41 Ga0209130_1000007 3300025284 Bacteria 591584
42 Ga0209130_1000459 3300025284 Bacteria 42729
43 Ga0209025_1000943 3300025294 Bacteria 44218
44 Ga0209025_1001147 3300025294 Bacteria 37727
45 Ga0209564_1000330 3300025295 Bacteria 92033
46 Ga0209758_1000005 3300025297 Bacteria 1368918
47 Ga0209758_1000011 3300025297 Bacteria 1049685
48 Ga0209758_1000359 3300025297 Bacteria 81559
49 Ga0209758_1000752 3300025297 Bacteria 46978
50 Ga0209758_1006253 3300025297 Bacteria 8669
51 Ga0209256_1004732 3300025299 Bacteria 8324
52 Ga0207426_1000064 3300025302 Bacteria 358276
53 Ga0207426_1000651 3300025302 Bacteria 42741
54 Ga0209257_1001035 3300025304 Bacteria 37155
55 Ga0209257_1011216 3300025304 Bacteria 4353
56 Ga0209281_1000251 3300027111 Bacteria 106988
57 Ga0209281_1000282 3300027111 Bacteria 95961
58 Ga0209281_1001891 3300027111 Bacteria 10037
59 Ga0268266_10002827 3300028379 Bacteria 18102
60 Ga0265337_1000505 3300028556 Bacteria 20744
61 Ga0265334_10000311 3300028573 Bacteria 26888
62 Ga0265318_10002792 3300028577 Bacteria 9141
63 Ga0265323_10000051 3300028653 Bacteria 64400
64 Ga0265322_10000771 3300028654 Bacteria 11516
65 Ga0265336_10000026 3300028666 Bacteria 182259
66 Ga0307515_10000788 3300028794 Bacteria 72975
67 Ga0307515_10003069 3300028794 Bacteria 35363
68 Ga0307515_10022261 3300028794 Bacteria 11178
69 Ga0265338_10000018 3300028800 Bacteria 338910
70 Ga0265324_10000143 3300029957 Bacteria 55192
71 Ga0265324_10000200 3300029957 Bacteria 45559
72 Ga0307513_10003012 3300031456 Bacteria 22987
73 Ga0307513_10014811 3300031456 Bacteria 9486
74 Ga0307509_10004247 3300031507 Bacteria 20883
75 Ga0265313_10003293 3300031595 Bacteria 13238
76 Ga0265314_10000136 3300031711 Bacteria 109906
77 Ga0307516_10002706 3300031730 Bacteria 23380
78 Ga0307516_10011745 3300031730 Bacteria 9502
79 Ga0315914_1000040 3300031967 Bacteria 95961
80 Ga0307414_10001503 3300032004 Bacteria 12105
81 Ga0315913_1000020 3300033430 Bacteria 95961
82 Ga0315915_1000027 3300033464 Bacteria 95961
83 Ga0373931_0006846 3300035691 Bacteria 5362
84 Ga0395905_0001852 3300037471 Bacteria 24368
85 Ga0395901_0029791 3300038443 Bacteria 5621
86 Ga0451576_0002715 3300045051 Bacteria 25708
87 Ga0451576_0046726 3300045051 Bacteria 4557
88 Ga0495638_0000931 3300046460 Bacteria 29693
89 Ga0495638_0004397 3300046460 Bacteria 10666
90 Ga0495645_0025511 3300046543 Bacteria 4290
91 Ga0496104_0000861 3300048907 Bacteria 26125
92 Ga0496104_0016320 3300048907 Bacteria 6742
93 Ga0496105_0000433 3300048908 Bacteria 27434
94 Ga0496105_0020718 3300048908 Bacteria 5315
95 Ga0496112_0000067 3300048915 Bacteria 68767
96 Ga0501031_0000028 3300049568 Bacteria 82323
97 Ga0501032_0000651 3300049569 Bacteria 28215
98 Ga0501032_0000659 3300049569 Bacteria 28033
99 Ga0501032_0001084 3300049569 Bacteria 21773
100 Ga0501032_0002419 3300049569 Bacteria 14568
101 Ga0501032_0007635 3300049569 Bacteria 7886
102 Ga0501032_0008832 3300049569 Bacteria 7329
103 Ga0501032_0012573 3300049569 Bacteria 6044
104 Ga0501033_0000180 3300049570 Bacteria 60526
105 Ga0501033_0000787 3300049570 Bacteria 29042
106 Ga0501034_0002568 3300049571 Bacteria 21619
107 Ga0501034_0004190 3300049571 Bacteria 16096
108 Ga0501034_0007280 3300049571 Bacteria 11797
109 Ga0501034_0017461 3300049571 Bacteria 7359
110 Ga0501034_0017901 3300049571 Bacteria 7266
111 Ga0501036_0000909 3300049572 Bacteria 22186
112 Ga0501036_0007249 3300049572 Bacteria 9029
113 Ga0501036_0017340 3300049572 Bacteria 6018
114 Ga0501037_0000192 3300049573 Bacteria 56437
115 Ga0501037_0008963 3300049573 Bacteria 7328
116 Ga0501037_0012691 3300049573 Bacteria 6205
117 Ga0501038_0000021 3300049574 Bacteria 151672
118 Ga0501038_0000171 3300049574 Bacteria 55320
119 Ga0501038_0000519 3300049574 Bacteria 33842
120 Ga0501038_0013302 3300049574 Bacteria 7503
121 Ga0501038_0031363 3300049574 Bacteria 4697
122 Ga0501039_0000026 3300049575 Bacteria 150606
123 Ga0501039_0000261 3300049575 Bacteria 38708
124 Ga0501039_0009262 3300049575 Bacteria 7501
125 Ga0501039_0028304 3300049575 Bacteria 4313
126 Ga0501043_0002560 3300049579 Bacteria 15366
127 Ga0501043_0003085 3300049579 Bacteria 13831
128 Ga0501043_0007286 3300049579 Bacteria 8783
129 Ga0501046_0000634 3300049580 Bacteria 34514
130 Ga0501046_0003033 3300049580 Bacteria 15519
131 Ga0501047_0000606 3300049581 Bacteria 38066
132 Ga0501047_0002107 3300049581 Bacteria 19031
133 Ga0501047_0005890 3300049581 Bacteria 11534
134 Ga0501048_0023244 3300049582 Bacteria 4533
135 Ga0501070_0027830 3300049586 Bacteria 4741
136 Ga0501074_0020021 3300049590 Bacteria 4863
137 Ga0501077_0001448 3300049593 Bacteria 14293
138 Ga0501079_0000157 3300049741 Bacteria 37345
139 Ga0501080_0006089 3300049742 Bacteria 10812
140 Ga0501035_0000186 3300049822 Bacteria 75905
141 Ga0501035_0000354 3300049822 Bacteria 52821
142 Ga0501035_0001265 3300049822 Bacteria 26217
143 Ga0501035_0001496 3300049822 Bacteria 23919
144 Ga0501035_0013048 3300049822 Bacteria 7666
145 Ga0501035_0018823 3300049822 Bacteria 6362
146 Ga0501044_0000026 3300049823 Bacteria 183624
147 Ga0501044_0001604 3300049823 Bacteria 26455
148 Ga0501045_0003269 3300049824 Bacteria 11077
149 Ga0495601_0003631 3300053077 Bacteria 8870
150 Ga0495612_0011402 3300053078 Bacteria 3584
151 Ga0500566_0003195 3300053094 Bacteria 9795
152 Ga0500557_000022 3300053105 Bacteria 88506
153 Ga0500595_000438 3300053119 Bacteria 25956
154 Ga0500642_0000031 3300053130 Bacteria 114671
155 Ga0500616_0010422 3300053153 Bacteria 5562
156 Ga0500638_000051 3300053162 Bacteria 27566
157 Ga0500636_0000772 3300053177 Bacteria 17294
158 Ga0500637_0001819 3300053178 Bacteria 9231
159 Ga0501084_0004439 3300054114 Bacteria 11451
160 Ga0500661_000025 3300055283 Bacteria 22926
161 Ga0501082_0000506 3300060353 Bacteria 34564
162 Ga0530510_0002074 3300061734 Bacteria 13769

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053119 Ga0500595_000438 Ga0500595_000438_14_2941 916
2 3300053078 Ga0495612_0011402 Ga0495612_0011402_592_3564 930
3 3300046543 Ga0495645_0025511 Ga0495645_0025511_39_3014 931
4 3300031595 Ga0265313_10003293 Ga0265313_100032935 976
5 3300049568 Ga0501031_0000028 Ga0501031_0000028_76647_79772 977
6 3300049569 Ga0501032_0000659 Ga0501032_0000659_9230_12355 977
7 3300049571 Ga0501034_0017901 Ga0501034_0017901_945_4070 977
8 3300049573 Ga0501037_0000192 Ga0501037_0000192_38940_42065 977
9 3300049574 Ga0501038_0000171 Ga0501038_0000171_2565_5690 977
10 3300049575 Ga0501039_0000261 Ga0501039_0000261_5078_8203 977
11 3300049579 Ga0501043_0002560 Ga0501043_0002560_11896_15021 977
12 3300049581 Ga0501047_0002107 Ga0501047_0002107_146_3271 977
13 3300049822 Ga0501035_0000186 Ga0501035_0000186_60929_64054 977
14 3300049569 Ga0501032_0012573 Ga0501032_0012573_438_3557 978
15 3300049570 Ga0501033_0000787 Ga0501033_0000787_16849_19968 978
16 3300049572 Ga0501036_0007249 Ga0501036_0007249_4295_7414 978
17 3300049822 Ga0501035_0001265 Ga0501035_0001265_6372_9491 978
18 3300009551 Ga0105238_10003388 Ga0105238_1000338816 979
19 3300029957 Ga0265324_10000200 Ga0265324_1000020028 980
20 3300031711 Ga0265314_10000136 Ga0265314_1000013643 980
21 3300031456 Ga0307513_10003012 Ga0307513_100030123 981
22 3300048915 Ga0496112_0000067 Ga0496112_0000067_10543_13701 981
23 3300049573 Ga0501037_0012691 Ga0501037_0012691_11_3163 981
24 3300049574 Ga0501038_0013302 Ga0501038_0013302_2435_5572 985
25 3300021321 Ga0214542_1000700 Ga0214542_10007003 986
26 3300021327 Ga0214543_1000016 Ga0214543_100001622 986
27 3300053105 Ga0500557_000022 Ga0500557_000022_34962_38150 989
28 3300013105 Ga0157369_10000848 Ga0157369_1000084835 990
29 3300049569 Ga0501032_0001084 Ga0501032_0001084_16832_19966 990
30 3300053094 Ga0500566_0003195 Ga0500566_0003195_3926_7078 991
31 3300053162 Ga0500638_000051 Ga0500638_000051_11157_14309 991
32 3300053178 Ga0500637_0001819 Ga0500637_0001819_2866_6018 991
33 3300055283 Ga0500661_000025 Ga0500661_000025_19163_22315 991
34 3300049569 Ga0501032_0007635 Ga0501032_0007635_3310_6465 992
35 3300049571 Ga0501034_0007280 Ga0501034_0007280_7111_10266 992
36 3300049580 Ga0501046_0000634 Ga0501046_0000634_22092_25247 992
37 3300049581 Ga0501047_0000606 Ga0501047_0000606_12281_15436 992
38 3300049586 Ga0501070_0027830 Ga0501070_0027830_1485_4640 992
39 3300049742 Ga0501080_0006089 Ga0501080_0006089_5093_8248 992
40 3300049822 Ga0501035_0018823 Ga0501035_0018823_1157_4312 992
41 3300049823 Ga0501044_0000026 Ga0501044_0000026_162374_165529 992
42 3300003215 JGI25153J46596_10000524 JGI25153J46596_1000052411 993
43 3300005548 Ga0070665_100003035 Ga0070665_1000030357 993
44 3300025297 Ga0209758_1000011 Ga0209758_1000011169 993
45 3300025297 Ga0209758_1000359 Ga0209758_100035926 993
46 3300025299 Ga0209256_1004732 Ga0209256_10047323 993
47 3300025304 Ga0209257_1001035 Ga0209257_100103524 993
48 3300028379 Ga0268266_10002827 Ga0268266_100028277 993
49 3300048908 Ga0496105_0020718 Ga0496105_0020718_1501_4671 994
50 3300002773 JGI25152J39213_1000158 JGI25152J39213_100015821 995
51 3300003215 JGI25153J46596_10000242 JGI25153J46596_1000024241 995
52 3300025245 Ga0207425_1000076 Ga0207425_1000076104 995
53 3300025258 Ga0209129_1000295 Ga0209129_100029524 995
54 3300025297 Ga0209758_1000752 Ga0209758_100075224 995
55 3300060353 Ga0501082_0000506 Ga0501082_0000506_10742_13918 995
56 3300006946 Ga0079104_1000123 Ga0079104_100012375 996
57 3300009093 Ga0105240_10039319 Ga0105240_100393193 996
58 3300027111 Ga0209281_1000251 Ga0209281_100025170 996
59 3300045051 Ga0451576_0046726 Ga0451576_0046726_1244_4384 996
60 3300049579 Ga0501043_0007286 Ga0501043_0007286_2115_5312 996
61 3300049580 Ga0501046_0003033 Ga0501046_0003033_11305_14502 996
62 3300049582 Ga0501048_0023244 Ga0501048_0023244_470_3667 996
63 3300049590 Ga0501074_0020021 Ga0501074_0020021_1182_4379 996
64 3300049593 Ga0501077_0001448 Ga0501077_0001448_6488_9685 996
65 3300049741 Ga0501079_0000157 Ga0501079_0000157_16751_19948 996
66 3300049824 Ga0501045_0003269 Ga0501045_0003269_4202_7399 996
67 3300054114 Ga0501084_0004439 Ga0501084_0004439_2126_5323 996
68 3300061734 Ga0530510_0002074 Ga0530510_0002074_6970_10167 996
69 iso_pu_bacteria 2595698237 2596374290 996
70 iso_pu_bacteria 2802428861 2802740383 996
71 3300049569 Ga0501032_0002419 Ga0501032_0002419_2854_6039 997
72 3300049574 Ga0501038_0000519 Ga0501038_0000519_24469_27654 997
73 3300049575 Ga0501039_0028304 Ga0501039_0028304_944_4129 997
74 iso_pu_bacteria 2909042592 2909044053 997
75 3300003771 Ga0055526_1001192 Ga0055526_100119211 998
76 3300025294 Ga0209025_1000943 Ga0209025_100094343 998
77 3300025295 Ga0209564_1000330 Ga0209564_100033084 998
78 3300025304 Ga0209257_1011216 Ga0209257_10112161 998
79 3300046460 Ga0495638_0004397 Ga0495638_0004397_3280_6450 998
80 iso_pu_bacteria 2895511927 2895515563 998
81 iso_pu_bacteria 2895522137 2895524744 998
82 3300006178 Ga0075367_10002651 Ga0075367_100026517 999
83 3300006946 Ga0079104_1002442 Ga0079104_10024423 999
84 3300027111 Ga0209281_1001891 Ga0209281_10018916 999
85 3300031507 Ga0307509_10004247 Ga0307509_1000424715 999
86 3300045051 Ga0451576_0002715 Ga0451576_0002715_15715_18852 999
87 3300049570 Ga0501033_0000180 Ga0501033_0000180_51685_54855 999
88 3300053130 Ga0500642_0000031 Ga0500642_0000031_82763_85942 999
89 iso_pu_bacteria 2902330777 2902333208 999
90 3300005937 Ga0081455_10005510 Ga0081455_1000551010 1000
91 3300013250 Ga0171462_1027 Ga0171462_1027103 1000
92 3300049581 Ga0501047_0005890 Ga0501047_0005890_2696_5872 1000
93 iso_pu_bacteria 8054558443 8054559430 1000
94 3300005545 Ga0070695_100008788 Ga0070695_1000087882 1001
95 3300035691 Ga0373931_0006846 Ga0373931_0006846_378_3539 1001
96 3300006847 Ga0075431_100017980 Ga0075431_1000179803 1002
97 3300025254 Ga0209148_1001232 Ga0209148_10012325 1002
98 3300025272 Ga0209455_1002738 Ga0209455_10027383 1002
99 3300028794 Ga0307515_10022261 Ga0307515_1002226110 1002
100 3300032004 Ga0307414_10001503 Ga0307414_100015036 1002
101 3300049569 Ga0501032_0000651 Ga0501032_0000651_8911_12081 1002
102 3300049571 Ga0501034_0002568 Ga0501034_0002568_4424_7594 1002
103 3300049572 Ga0501036_0017340 Ga0501036_0017340_2692_5862 1002
104 3300049574 Ga0501038_0000021 Ga0501038_0000021_48988_52158 1002
105 3300049575 Ga0501039_0000026 Ga0501039_0000026_48972_52142 1002
106 3300049579 Ga0501043_0003085 Ga0501043_0003085_10098_13268 1002
107 3300049822 Ga0501035_0000354 Ga0501035_0000354_665_3835 1002
108 iso_pu_bacteria 2513237305 2514417913 1002
109 iso_pu_bacteria 2721755686 2723578332 1002
110 iso_pu_bacteria 2841734538 2841740193 1002
111 iso_pu_bacteria 2856342000 2856348510 1002
112 iso_pu_bacteria 2871474448 2871475163 1002
113 iso_pu_bacteria 2882632389 2882639167 1002
114 iso_pu_bacteria 2917699015 2917700340 1002
115 iso_pu_bacteria 2924754689 2924757396 1002
116 iso_pu_bacteria 2958071322 2958077687 1002
117 iso_pu_bacteria 2970524798 2970526058 1002
118 iso_pu_bacteria 8004633249 8004637152 1002
119 iso_pu_bacteria 8055617313 8055621680 1002
120 3300003354 JGI25160J50197_1000724 JGI25160J50197_10007245 1003
121 3300003374 JGI25161J50226_1000479 JGI25161J50226_10004795 1003
122 3300004625 Ga0055543_1000665 Ga0055543_10006655 1003
123 3300005262 Ga0065165_1002111 Ga0065165_100211112 1003
124 3300025284 Ga0209130_1000459 Ga0209130_100045922 1003
125 3300025297 Ga0209758_1006253 Ga0209758_10062533 1003
126 3300025302 Ga0207426_1000651 Ga0207426_100065122 1003
127 3300031730 Ga0307516_10002706 Ga0307516_100027069 1003
128 3300037471 Ga0395905_0001852 Ga0395905_0001852_19898_23080 1003
129 3300038443 Ga0395901_0029791 Ga0395901_0029791_907_4068 1003
130 3300053077 Ga0495601_0003631 Ga0495601_0003631_3937_7128 1003
131 iso_pu_bacteria 2643221550 2643773898 1003
132 iso_pu_bacteria 2643221558 2643810798 1003
133 iso_pu_bacteria 2643221568 2643858336 1003
134 iso_pu_bacteria 2738541281 2738746972 1003
135 iso_pu_bacteria 2738543032 2739356227 1003
136 iso_pu_bacteria 2882456835 2882459077 1003
137 iso_pu_bacteria 2902330777 2902331530 1003
138 iso_pu_bacteria 8005301065 8005304727 1003
139 iso_pu_bacteria 8005688590 8005691152 1003
140 3300028794 Ga0307515_10003069 Ga0307515_100030695 1004
141 iso_pu_bacteria 2507262055 2507507811 1004
142 iso_pu_bacteria 2585427526 2585525069 1004
143 iso_pu_bacteria 2595698237 2596377084 1004
144 iso_pu_bacteria 2791355094 2792644237 1004
145 iso_pu_bacteria 2829745981 2829749310 1004
146 iso_pu_bacteria 2879099564 2879105599 1004
147 iso_pu_bacteria 2884298095 2884298129 1004
148 iso_pu_bacteria 2889306138 2889309975 1004
149 iso_pu_bacteria 2894817345 2894820065 1004
150 iso_pu_bacteria 2902405164 2902407386 1004
151 iso_pu_bacteria 2913295892 2913301305 1004
152 iso_pu_bacteria 2929615660 2929620395 1004
153 iso_pu_bacteria 2929624759 2929626288 1004
154 iso_pu_bacteria 2932784394 2932784840 1004
155 iso_pu_bacteria 2932809354 2932809874 1004
156 iso_pu_bacteria 2932818245 2932818383 1004
157 iso_pu_bacteria 2932828146 2932828676 1004
158 iso_pu_bacteria 2933577622 2933582313 1004
159 iso_pu_bacteria 2935638405 2935638885 1004
160 iso_pu_bacteria 2935665750 2935666265 1004
161 iso_pu_bacteria 2935675223 2935676690 1004
162 iso_pu_bacteria 2935684952 2935685079 1004
163 iso_pu_bacteria 2935703347 2935703890 1004
164 iso_pu_bacteria 2935713505 2935713632 1004
165 iso_pu_bacteria 2935722832 2935724252 1004
166 iso_pu_bacteria 2935732158 2935733390 1004
167 iso_pu_bacteria 2935741537 2935742769 1004
168 iso_pu_bacteria 2935750917 2935751044 1004
169 iso_pu_bacteria 2935760218 2935760433 1004
170 iso_pu_bacteria 2935801545 2935802027 1004
171 iso_pu_bacteria 2935810662 2935810796 1004
172 iso_pu_bacteria 2935819856 2935822847 1004
173 iso_pu_bacteria 2935827899 2935828379 1004
174 iso_pu_bacteria 2935837841 2935839794 1004
175 iso_pu_bacteria 2935847175 2935848429 1004
176 iso_pu_bacteria 2935864058 2935868876 1004
177 iso_pu_bacteria 2935873716 2935874291 1004
178 iso_pu_bacteria 2935916978 2935917491 1004
179 iso_pu_bacteria 2935992306 2935992783 1004
180 iso_pu_bacteria 2936002035 2936002697 1004
181 iso_pu_bacteria 2936037263 2936037784 1004
182 iso_pu_bacteria 2940556831 2940558153 1004
183 iso_pu_bacteria 2941538514 2941540865 1004
184 iso_pu_bacteria 3003665799 3003672730 1004
185 iso_pu_bacteria 8016511872 8016520808 1004
186 iso_pu_bacteria 8019597564 8019599372 1004
187 iso_pu_bacteria 8055742211 8055745257 1004
188 3300009765 Ga0123341_1012395 Ga0123341_10123957 1005
189 3300009766 Ga0123342_1009900 Ga0123342_10099004 1005
190 3300046460 Ga0495638_0000931 Ga0495638_0000931_18577_21750 1005
191 3300053153 Ga0500616_0010422 Ga0500616_0010422_723_3896 1005
192 iso_pu_bacteria 2513237084 2513573378 1005
193 iso_pu_bacteria 2513237144 2513913461 1005
194 iso_pu_bacteria 2515075009 2515112518 1005
195 iso_pu_bacteria 2582581298 2585226742 1005
196 iso_pu_bacteria 2582581316 2585336425 1005
197 iso_pu_bacteria 2585427529 2585550157 1005
198 iso_pu_bacteria 2617270742 2617380889 1005
199 iso_pu_bacteria 2643221651 2644291701 1005
200 iso_pu_bacteria 2718218233 2720617965 1005
201 iso_pu_bacteria 2718218269 2720773017 1005
202 iso_pu_bacteria 2721755819 2724093046 1005
203 iso_pu_bacteria 2767802442 2770199987 1005
204 iso_pu_bacteria 2775506902 2776267488 1005
205 iso_pu_bacteria 2775506904 2776281370 1005
206 iso_pu_bacteria 2775507266 2778177871 1005
207 iso_pu_bacteria 2791355262 2793334962 1005
208 iso_pu_bacteria 2838029111 2838030274 1005
209 iso_pu_bacteria 2842163707 2842170185 1005
210 iso_pu_bacteria 2842475841 2842477447 1005
211 iso_pu_bacteria 2842502639 2842504243 1005
212 iso_pu_bacteria 2842698319 2842700789 1005
213 iso_pu_bacteria 2852387548 2852388867 1005
214 iso_pu_bacteria 2903768456 2903773313 1005
215 iso_pu_bacteria 2970489779 2970489992 1005
216 iso_pu_bacteria 3005409236 3005414754 1005
217 iso_pu_bacteria 643348564 643592517 1005
218 iso_pu_bacteria 8005460587 8005463191 1005
219 iso_pu_bacteria 8005619151 8005624525 1005
220 iso_pu_bacteria 8057575449 8057577956 1005
221 3300005937 Ga0081455_10000017 Ga0081455_10000017157 1006
222 3300006946 Ga0079104_1000159 Ga0079104_100015989 1006
223 3300027111 Ga0209281_1000282 Ga0209281_100028262 1006
224 3300028794 Ga0307515_10000788 Ga0307515_1000078857 1006
225 3300031967 Ga0315914_1000040 Ga0315914_100004085 1006
226 3300033430 Ga0315913_1000020 Ga0315913_100002010 1006
227 3300033464 Ga0315915_1000027 Ga0315915_100002724 1006
228 iso_pu_bacteria 2510917028 2511181482 1006
229 iso_pu_bacteria 2512047086 2512528790 1006
230 iso_pu_bacteria 2513237085 2513575643 1006
231 iso_pu_bacteria 2513237143 2513902027 1006
232 iso_pu_bacteria 2516143018 2516204274 1006
233 iso_pu_bacteria 2516653046 2516896592 1006
234 iso_pu_bacteria 2516653046 2516898399 1006
235 iso_pu_bacteria 2551306089 2551713060 1006
236 iso_pu_bacteria 2582581299 2585233628 1006
237 iso_pu_bacteria 2582581306 2585269094 1006
238 iso_pu_bacteria 2582581315 2585325159 1006
239 iso_pu_bacteria 2582581865 2585389666 1006
240 iso_pu_bacteria 2599185352 2600192098 1006
241 iso_pu_bacteria 2643221651 2644291491 1006
242 iso_pu_bacteria 2690316117 2692314674 1006
243 iso_pu_bacteria 2775506901 2776264211 1006
244 iso_pu_bacteria 2802428858 2802721492 1006
245 iso_pu_bacteria 2802428862 2802746986 1006
246 iso_pu_bacteria 2821123053 2821127047 1006
247 iso_pu_bacteria 2838729681 2838735234 1006
248 iso_pu_bacteria 2838736955 2838740811 1006
249 iso_pu_bacteria 2838742623 2838747915 1006
250 iso_pu_bacteria 2841840854 2841844652 1006
251 iso_pu_bacteria 2842140634 2842144279 1006
252 iso_pu_bacteria 2842243621 2842249004 1006
253 iso_pu_bacteria 2842257432 2842262959 1006
254 iso_pu_bacteria 2847417321 2847420273 1006
255 iso_pu_bacteria 2857531043 2857534965 1006
256 iso_pu_bacteria 2896384573 2896387737 1006
257 iso_pu_bacteria 2902330777 2902333936 1006
258 iso_pu_bacteria 2916000859 2916007318 1006
259 iso_pu_bacteria 2916041962 2916045016 1006
260 iso_pu_bacteria 2916048683 2916051953 1006
261 iso_pu_bacteria 2916076590 2916082539 1006
262 iso_pu_bacteria 2921208531 2921213270 1006
263 iso_pu_bacteria 2921237296 2921240537 1006
264 iso_pu_bacteria 2921257292 2921260052 1006
265 iso_pu_bacteria 2924165586 2924168432 1006
266 iso_pu_bacteria 2924179722 2924182043 1006
267 iso_pu_bacteria 2924193448 2924195769 1006
268 iso_pu_bacteria 2936367885 2936372847 1006
269 iso_pu_bacteria 2937009748 2937014289 1006
270 iso_pu_bacteria 2937016420 2937021572 1006
271 iso_pu_bacteria 2937023124 2937023949 1006
272 iso_pu_bacteria 2937119839 2937125809 1006
273 iso_pu_bacteria 2937822353 2937827156 1006
274 iso_pu_bacteria 2957382221 2957382994 1006
275 iso_pu_bacteria 2957395598 2957396272 1006
276 iso_pu_bacteria 2957402308 2957402954 1006
277 iso_pu_bacteria 2957408893 2957410725 1006
278 iso_pu_bacteria 2957415311 2957419323 1006
279 iso_pu_bacteria 2957457609 2957458786 1006
280 iso_pu_bacteria 2957491536 2957495574 1006
281 iso_pu_bacteria 2960610863 2960614230 1006
282 iso_pu_bacteria 2960617483 2960621325 1006
283 iso_pu_bacteria 2960687367 2960690864 1006
284 iso_pu_bacteria 2964615318 2964619304 1006
285 iso_pu_bacteria 2964712639 2964717059 1006
286 iso_pu_bacteria 2967721400 2967725025 1006
287 iso_pu_bacteria 2967735183 2967736992 1006
288 iso_pu_bacteria 2967742019 2967745656 1006
289 iso_pu_bacteria 2967755722 2967761668 1006
290 iso_pu_bacteria 2970076120 2970081314 1006
291 iso_pu_bacteria 2970095765 2970097362 1006
292 iso_pu_bacteria 2970102677 2970105827 1006
293 iso_pu_bacteria 2970170962 2970174300 1006
294 iso_pu_bacteria 2977516862 2977518809 1006
295 iso_pu_bacteria 2977523885 2977526614 1006
296 iso_pu_bacteria 2977537788 2977540393 1006
297 iso_pu_bacteria 643692032 643822713 1006
298 iso_pu_bacteria 8005376324 8005379070 1006
299 iso_pu_bacteria 8018127388 8018130932 1006
300 iso_pu_bacteria 8018176218 8018178230 1006
301 iso_pu_bacteria 8049293176 8049296932 1006
302 3300048907 Ga0496104_0000861 Ga0496104_0000861_18714_21899 1007
303 3300048907 Ga0496104_0016320 Ga0496104_0016320_1094_4279 1007
304 3300048908 Ga0496105_0000433 Ga0496105_0000433_4905_8090 1007
305 3300049822 Ga0501035_0013048 Ga0501035_0013048_3448_6618 1007
306 3300028556 Ga0265337_1000505 Ga0265337_100050517 1008
307 3300028573 Ga0265334_10000311 Ga0265334_100003113 1008
308 3300028577 Ga0265318_10002792 Ga0265318_100027926 1008
309 3300028653 Ga0265323_10000051 Ga0265323_1000005134 1008
310 3300028654 Ga0265322_10000771 Ga0265322_100007716 1008
311 3300028666 Ga0265336_10000026 Ga0265336_1000002670 1008
312 3300028800 Ga0265338_10000018 Ga0265338_10000018111 1008
313 3300029957 Ga0265324_10000143 Ga0265324_1000014333 1008
314 3300031730 Ga0307516_10011745 Ga0307516_100117458 1008
315 3300049569 Ga0501032_0008832 Ga0501032_0008832_460_3651 1008
316 3300049571 Ga0501034_0004190 Ga0501034_0004190_10935_14129 1008
317 3300049572 Ga0501036_0000909 Ga0501036_0000909_18005_21196 1008
318 3300049574 Ga0501038_0031363 Ga0501038_0031363_151_3342 1008
319 3300049822 Ga0501035_0001496 Ga0501035_0001496_7077_10268 1008
320 3300049823 Ga0501044_0001604 Ga0501044_0001604_12032_15226 1008
321 3300003215 JGI25153J46596_10000022 JGI25153J46596_1000002224 1009
322 3300025294 Ga0209025_1001147 Ga0209025_100114721 1009
323 3300025297 Ga0209758_1000005 Ga0209758_1000005534 1009
324 3300031456 Ga0307513_10014811 Ga0307513_100148117 1009
325 3300049571 Ga0501034_0017461 Ga0501034_0017461_3236_6412 1009
326 3300049573 Ga0501037_0008963 Ga0501037_0008963_174_3350 1009
327 3300049575 Ga0501039_0009262 Ga0501039_0009262_3613_6789 1009
328 3300002987 JGI25159J45721_1000002 JGI25159J45721_1000002101 1010
329 3300003354 JGI25160J50197_1000008 JGI25160J50197_1000008101 1010
330 3300003374 JGI25161J50226_1001914 JGI25161J50226_10019143 1010
331 3300004625 Ga0055543_1000027 Ga0055543_100002732 1010
332 3300005262 Ga0065165_1000015 Ga0065165_1000015102 1010
333 3300025208 Ga0209436_101135 Ga0209436_1011357 1010
334 3300025284 Ga0209130_1000007 Ga0209130_1000007201 1010
335 3300025302 Ga0207426_1000064 Ga0207426_1000064201 1010
336 3300002737 JGI25162J39368_1000481 JGI25162J39368_10004818 1011
337 3300003214 JGI25165J46597_1001127 JGI25165J46597_10011277 1011
338 3300025233 Ga0209437_100023 Ga0209437_10002329 1011
339 3300025261 Ga0209233_1000219 Ga0209233_100021929 1011
340 3300053177 Ga0500636_0000772 Ga0500636_0000772_2578_5814 1011

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00873

ACR_tran

AcrB/AcrD/AcrF family

2

1027

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3k07-assembly1.cif.gz_A crystal structure of cusa 0.692 6 985
4dnt-assembly1.cif.gz_A crystal structure of the cusba heavy-metal efflux complex from escherichia coli, mutant 0.6907 1 985
4dop-assembly1.cif.gz_A crystal structure of the cusba heavy-metal efflux complex from escherichia coli, r mutant 0.6893 1 985
3t51-assembly1.cif.gz_A crystal structures of the pre-extrusion and extrusion states of the cusba adaptor-transporter complex 0.68 9 985
4dnt-assembly1.cif.gz_A crystal structure of the cusba heavy-metal efflux complex from escherichia coli, mutant 0.6746 1 985
ID Description Score Start End Superfamily
af_P38054_878_1046_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9446 825 985 1.20.1640.10
af_P38054_46_113_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.8898 47 113 3.30.70.1430
af_P38054_878_1046_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.8849 825 985 1.20.1640.10
4zjlE01 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.8834 808 983 1.20.1640.10
af_P38054_335_507_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.8722 825 983 1.20.1640.10
ID Description Score Start End GO Terms
AF-A0A353PEH8-F1-model_v4 CusA/CzcA family heavy metal efflux RND transporter 0.9313 789 983 GO:0005886
GO:0042910
AF-A0A7Y4N431-F1-model_v4 deleted 0.9082 723 930
AF-A0A7Y4N431-F1-model_v4 deleted 0.905 723 930
AF-A0A833ETF4-F1-model_v4 AcrB/AcrD/AcrF family protein 0.8845 750 1003 GO:0005886
GO:0042910
AF-A0A353PEH8-F1-model_v4 CusA/CzcA family heavy metal efflux RND transporter 0.884 789 983 GO:0005886
GO:0042910

Feature Viewer

pLDDT pTM Quality
68.94 0.56 Medium
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Predicted Structure (AlphaFold2)

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