F413501

General Info

Members Datasets Scaffolds Average Seq Length
338 190 278 355

Family's Representative Sequence

Representative Sequence 3300013104|Ga0157370_10010782|Ga0157370_100107823
Length 414
Sequence LTSPTAWLKKINKTQDKMNIRVNSFLCASMAFLMLPIFSYAQTAAQSISGLQPVLDRVYSEMLPLCSGMINVGRGLAGFGALWYIASRVWRQLASAESIDFYPLLRPFALGMAVMLFPAVIGMINGALQPTVSATNAMVADSNKAIERLLKMKEAAIKKSRYWQMYVGENGSGDMDKWHKYTYPKDPNGGEETFLDGLGRGLEFNIAKASYNFRNSIKQWLSEVLEILYAAAALCINTVRTFFLIVLAILGPLVFGFAVFDGFQNTLTVWIARYVNIFLWLPICNIFSSILGKVQENMLKLDLSQIEQQGDTFFSSLDTAYLIFLIIGIVGYFCVPNVANYVVHAGGGNTILQKVNSIVSSSTRTAKQAGTVGGGMVADALGDGYRNMKQSFSSGAQGDYFSDSPHQKQRIEGK

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
3 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
4 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
5 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
6 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
7 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
8 2585428061 Chryseobacterium sp. CF356 Isolate Rhizosphere
9 2585428115 Chryseobacterium sp. YR561 Isolate Rhizosphere
10 2585428182 Chryseobacterium sp. YR477 Isolate Rhizosphere
11 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
12 2585428185 Chryseobacterium sp. YR459 Isolate Rhizosphere
13 2588253712 Chryseobacterium sp. OV279 Isolate Rhizosphere
14 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
15 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
16 2728369107 Chryseobacterium kwangjuense KJ1R5 Isolate Unclassified
17 2738541283 Pedobacter sp. OK701 Isolate Unclassified
18 2738543023 Pedobacter sp. OK628 Isolate Unclassified
19 2739367663 Pedobacter sp. YR510 Isolate Unclassified
20 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
21 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
22 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
23 2818991437 Pedobacter terrae 518 Isolate Unclassified
24 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
25 2842083920 Chryseobacterium lathyri KCTC 22544 Isolate Rhizosphere
26 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
27 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
28 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
29 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
30 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
31 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
32 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
33 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
34 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
35 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
36 2905999023 Chryseobacterium elymi KCTC 22547 Isolate Rhizosphere
37 2919399522 Chryseobacterium sp. 2987 Isolate Unclassified
38 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
39 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
40 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
41 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
42 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
43 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
44 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
45 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
46 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
47 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
48 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
49 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
50 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
51 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
52 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
53 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
54 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
55 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
56 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
57 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
58 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
59 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
60 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
61 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
62 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
63 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
64 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
65 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
66 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
67 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
68 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
69 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
70 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
71 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
72 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
73 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
74 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
75 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
76 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
77 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
78 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
79 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
80 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
81 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
82 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
83 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
84 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
85 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
86 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
87 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
88 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
89 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
90 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
91 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
92 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
93 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
94 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
95 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
96 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
97 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
98 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
99 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
100 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
101 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
102 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
103 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
104 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
115 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
118 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
120 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
121 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
122 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
123 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
124 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
125 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
126 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
127 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
128 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
129 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
130 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
131 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
132 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
133 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
134 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
135 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
136 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
137 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
138 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
139 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
140 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
141 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
142 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
143 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
144 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
145 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
146 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
147 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
148 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
149 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
150 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
151 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
152 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
153 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
154 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
155 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
156 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
157 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
158 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
159 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
160 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
161 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
162 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
163 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
164 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
165 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
166 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
167 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
168 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
169 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
170 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
171 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
172 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
173 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
174 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
175 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
176 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
177 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
178 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
179 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
180 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
181 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
182 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
183 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
184 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
185 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
186 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
187 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
188 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
189 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere
190 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.25
Metatranscriptomes 0
Isolates 17.75

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.51
Nodule 0.3
Rhizoplane 1.18
Rhizosphere 73.08
Stem 0
Stem Tuber 0
Unclassified 18.93

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1596339 2162886007 Bacteria 98699
2 SwRhRL2b_contig_2418591 2162886007 Bacteria 39679
3 JGI24741J21665_1010306 3300001915 Bacteria 1677
4 JGI24739J22299_10001500 3300001989 Bacteria 8815
5 JGI24737J22298_10003187 3300001990 Bacteria 5819
6 JGI24735J21928_10000005 3300002067 Bacteria 356755
7 JGI25162J39368_1000672 3300002737 Bacteria 24058
8 rootH1_10040517 3300003316 Bacteria 4523
9 rootH2_10029332 3300003320 Bacteria 36860
10 rootH2_10075948 3300003320 Bacteria 6237
11 rootL2_10099950 3300003322 Bacteria 2539
12 rootL2_10120049 3300003322 Bacteria 1932
13 rootH1_10000566 3300003316 Bacteria 33162
14 rootH1_10000566 3300003323 Bacteria 205679
15 rootH1_10027911 3300003323 Bacteria 16379
16 rootH1_10038614 3300003323 Bacteria 23905
17 rootH1_10039926 3300003323 Bacteria 41576
18 rootH1_10077255 3300003323 Bacteria 2692
19 rootH1_10178418 3300003323 Bacteria 6320
20 rootH1_10279517 3300003323 Unclassified 1689
21 rootH1_10363444 3300003323 Bacteria 3601
22 JGI25160J50197_1003122 3300003354 Bacteria 7535
23 JGI25160J50197_1004216 3300003354 Bacteria 6247
24 Ga0055536_1000008 3300003781 Bacteria 335729
25 Ga0055536_1002175 3300003781 Bacteria 11179
26 Ga0055531_10000077 3300003794 Bacteria 106111
27 Ga0065165_1000142 3300005262 Bacteria 124889
28 Ga0065714_10005247 3300005288 Unclassified 4048
29 Ga0065714_10064434 3300005288 Bacteria 130989
30 Ga0065714_10064472 3300005288 Bacteria 60575
31 Ga0065714_10064854 3300005288 Bacteria 16979
32 Ga0065714_10066628 3300005288 Bacteria 6539
33 Ga0065714_10071892 3300005288 Bacteria 3473
34 Ga0065714_10072240 3300005288 Bacteria 3377
35 Ga0065714_10072426 3300005288 Bacteria 3370
36 Ga0065714_10086511 3300005288 Bacteria 2098
37 Ga0065714_10099409 3300005288 Bacteria 1688
38 Ga0065714_10120820 3300005288 Bacteria 1350
39 Ga0065704_10000199 3300005289 Bacteria 297176
40 Ga0065704_10070168 3300005289 Bacteria 171820
41 Ga0065704_10232523 3300005289 Bacteria 1039
42 Ga0065712_10081757 3300005290 Bacteria 2978
43 Ga0065715_10093902 3300005293 Bacteria 4505
44 Ga0070683_100008526 3300005329 Bacteria 8711
45 Ga0070682_100000172 3300005337 Bacteria 48194
46 Ga0070682_100000447 3300005337 Bacteria 26453
47 Ga0070660_100094485 3300005339 Bacteria 2362
48 Ga0070659_100030573 3300005366 Bacteria 4168
49 Ga0070659_100072356 3300005366 Bacteria 2743
50 Ga0070659_100110520 3300005366 Bacteria 2218
51 Ga0070681_10057632 3300005458 Unclassified 3865
52 Ga0070679_100000578 3300005530 Bacteria 31104
53 Ga0070679_100333873 3300005530 Bacteria 1464
54 Ga0070684_100054284 3300005535 Bacteria 3491
55 Ga0068853_100135348 3300005539 Bacteria 2208
56 Ga0070665_100000680 3300005548 Bacteria 45565
57 Ga0068855_100018113 3300005563 Bacteria 8463
58 Ga0068855_100403360 3300005563 Unclassified 1498
59 Ga0068856_100000536 3300005614 Bacteria 41838
60 Ga0068864_100013620 3300005618 Bacteria 6742
61 Ga0068860_100000034 3300005843 Bacteria 243128
62 Ga0081539_10019334 3300005985 Unclassified 4668
63 Ga0070715_10005716 3300006163 Bacteria 4173
64 Ga0075366_10000054 3300006195 Bacteria 41332
65 Ga0075433_10205214 3300006852 Bacteria 1752
66 Ga0099824_1022285 3300006942 Bacteria 4209
67 Ga0105244_10000035 3300009036 Bacteria 168428
68 Ga0105244_10000080 3300009036 Bacteria 106764
69 Ga0111539_10178666 3300009094 Bacteria 2479
70 Ga0105247_10082657 3300009101 Bacteria 2027
71 Ga0105243_10000104 3300009148 Bacteria 96700
72 Ga0105242_10105539 3300009176 Bacteria 2393
73 Ga0105237_10000800 3300009545 Bacteria 43041
74 Ga0105239_10022746 3300010375 Bacteria 6910
75 Ga0157373_10000048 3300013100 Bacteria 110104
76 Ga0157373_10000299 3300013100 Bacteria 40111
77 Ga0157373_10054481 3300013100 Unclassified 2842
78 Ga0157371_10000192 3300013102 Bacteria 90362
79 Ga0157371_10000255 3300013102 Bacteria 74280
80 Ga0157371_10001798 3300013102 Bacteria 21688
81 Ga0157371_10006282 3300013102 Bacteria 9840
82 Ga0157371_10016893 3300013102 Bacteria 5434
83 Ga0157371_10030167 3300013102 Unclassified 3913
84 Ga0157371_10046325 3300013102 Bacteria 3093
85 Ga0157371_10120072 3300013102 Bacteria 1868
86 Ga0157371_10178716 3300013102 Bacteria 1517
87 Ga0157370_10000068 3300013104 Bacteria 113329
88 Ga0157370_10000072 3300013104 Bacteria 110176
89 Ga0157370_10000205 3300013104 Bacteria 74877
90 Ga0157370_10000314 3300013104 Bacteria 60800
91 Ga0157370_10000366 3300013104 Bacteria 57034
92 Ga0157370_10000418 3300013104 Bacteria 53630
93 Ga0157370_10000492 3300013104 Bacteria 49180
94 Ga0157370_10000565 3300013104 Bacteria 46219
95 Ga0157370_10002245 3300013104 Bacteria 23478
96 Ga0157370_10002323 3300013104 Bacteria 23026
97 Ga0157370_10003516 3300013104 Bacteria 18363
98 Ga0157370_10006763 3300013104 Bacteria 12580
99 Ga0157370_10007419 3300013104 Bacteria 11937
100 Ga0157370_10010782 3300013104 Bacteria 9610
101 Ga0157370_10024743 3300013104 Bacteria 5945
102 Ga0157370_10076549 3300013104 Bacteria 3151
103 Ga0157370_10082136 3300013104 Bacteria 3031
104 Ga0157370_10472760 3300013104 Bacteria 1152
105 Ga0157369_10000181 3300013105 Bacteria 87584
106 Ga0157369_10000419 3300013105 Bacteria 56158
107 Ga0157369_10000742 3300013105 Bacteria 42082
108 Ga0157369_10004190 3300013105 Bacteria 17079
109 Ga0157369_10319908 3300013105 Bacteria 1613
110 Ga0163162_10000229 3300013306 Bacteria 51289
111 Ga0163162_10001422 3300013306 Bacteria 22254
112 Ga0163162_10003398 3300013306 Bacteria 15200
113 Ga0157372_10000326 3300013307 Bacteria 52158
114 Ga0157372_10006685 3300013307 Bacteria 12266
115 Ga0157372_10049700 3300013307 Bacteria 4664
116 Ga0157372_10140286 3300013307 Unclassified 2784
117 Ga0157372_10167670 3300013307 Bacteria 2540
118 Ga0157372_10389430 3300013307 Bacteria 1624
119 Ga0157375_10000913 3300013308 Bacteria 25691
120 Ga0157375_10083030 3300013308 Bacteria 3248
121 Ga0157380_10051556 3300014326 Bacteria 3255
122 Ga0182008_10000006 3300014497 Bacteria 378521
123 Ga0182008_10000864 3300014497 Bacteria 21021
124 Ga0182008_10004380 3300014497 Bacteria 8263
125 Ga0157376_10047226 3300014969 Bacteria 3553
126 Ga0182006_1000048 3300015261 Bacteria 184700
127 Ga0183373_1010 3300015682 Bacteria 196982
128 Ga0209026_1000254 3300025250 Bacteria 66928
129 Ga0209026_1000684 3300025250 Bacteria 20431
130 Ga0209026_1000912 3300025250 Bacteria 15143
131 Ga0209026_1002947 3300025250 Bacteria 5937
132 Ga0209676_1000042 3300025292 Bacteria 424130
133 Ga0209676_1000116 3300025292 Bacteria 203383
134 Ga0209564_1000127 3300025295 Bacteria 196942
135 Ga0209758_1002621 3300025297 Bacteria 17886
136 Ga0209050_1000035 3300025298 Bacteria 424005
137 Ga0207426_1000040 3300025302 Bacteria 433920
138 Ga0209257_1000007 3300025304 Bacteria 1564415
139 Ga0207655_1000008 3300025728 Bacteria 734289
140 Ga0207655_1000623 3300025728 Bacteria 42520
141 Ga0207647_10000120 3300025904 Bacteria 61491
142 Ga0207647_10000140 3300025904 Bacteria 57457
143 Ga0207685_10002585 3300025905 Bacteria 4186
144 Ga0207707_10028693 3300025912 Unclassified 4863
145 Ga0207695_10001751 3300025913 Bacteria 34449
146 Ga0207671_10000401 3300025914 Bacteria 60395
147 Ga0207657_10066181 3300025919 Bacteria 3077
148 Ga0207652_10000027 3300025921 Bacteria 151000
149 Ga0207652_10029742 3300025921 Unclassified 4571
150 Ga0207690_10150907 3300025932 Bacteria 1723
151 Ga0207709_10000144 3300025935 Bacteria 98895
152 Ga0207661_10019375 3300025944 Bacteria 5072
153 Ga0207667_10098533 3300025949 Bacteria 3017
154 Ga0207651_10037448 3300025960 Bacteria 3178
155 Ga0207708_10029457 3300026075 Bacteria 4162
156 Ga0207702_10000701 3300026078 Bacteria 36035
157 Ga0207676_10003410 3300026095 Bacteria 11238
158 Ga0268266_10000071 3300028379 Bacteria 232887
159 Ga0268264_10000052 3300028381 Bacteria 321218
160 Ga0307517_10022497 3300028786 Bacteria 7894
161 Ga0307517_10136685 3300028786 Unclassified 1740
162 Ga0307515_10067608 3300028794 Bacteria 4925
163 Ga0265338_10059316 3300028800 Bacteria 3372
164 Ga0265327_10047366 3300031251 Bacteria 2269
165 Ga0265327_10073924 3300031251 Bacteria 1699
166 Ga0307408_100000225 3300031548 Bacteria 60134
167 Ga0307408_100000573 3300031548 Bacteria 31741
168 Ga0307408_100001340 3300031548 Bacteria 18454
169 Ga0307408_100016987 3300031548 Bacteria 4866
170 Ga0307408_100098275 3300031548 Bacteria 2225
171 Ga0307408_100198372 3300031548 Bacteria 1622
172 Ga0307405_10002946 3300031731 Bacteria 7684
173 Ga0307405_10032851 3300031731 Bacteria 3072
174 Ga0307410_10000062 3300031852 Bacteria 38344
175 Ga0307406_10000087 3300031901 Bacteria 52833
176 Ga0307407_10000040 3300031903 Bacteria 66966
177 Ga0307412_10000028 3300031911 Bacteria 213966
178 Ga0307412_10000063 3300031911 Bacteria 125959
179 Ga0307412_10000117 3300031911 Bacteria 60990
180 Ga0307412_10018099 3300031911 Bacteria 4231
181 Ga0307412_10084793 3300031911 Bacteria 2200
182 Ga0307416_100000009 3300032002 Bacteria 374271
183 Ga0307416_100000082 3300032002 Bacteria 65465
184 Ga0307416_100117638 3300032002 Bacteria 2360
185 Ga0307414_10000001 3300032004 Bacteria 1352954
186 Ga0307414_10000221 3300032004 Bacteria 37491
187 Ga0307414_10000862 3300032004 Bacteria 15483
188 Ga0307414_10000865 3300032004 Bacteria 15476
189 Ga0307414_10000923 3300032004 Bacteria 15036
190 Ga0307414_10087669 3300032004 Bacteria 2301
191 Ga0307414_10345894 3300032004 Bacteria 1274
192 Ga0307411_10000004 3300032005 Bacteria 460327
193 Ga0307507_10001092 3300033179 Bacteria 60190
194 Ga0395899_0000002 3300037312 Bacteria 1324310
195 Ga0395899_0018587 3300037312 Bacteria 5281
196 Ga0395899_0032657 3300037312 Bacteria 3911
197 Ga0395900_0002909 3300037418 Bacteria 18659
198 Ga0395898_0027949 3300037466 Bacteria 5657
199 Ga0395898_0193086 3300037466 Unclassified 1945
200 Ga0395901_0001896 3300038443 Bacteria 21588
201 Ga0395901_0062519 3300038443 Bacteria 3874
202 Ga0439465_0000202 3300041413 Bacteria 15766
203 Ga0439445_0000344 3300042004 Bacteria 9168
204 Ga0453683_0122030 3300044673 Bacteria 1641
205 Ga0466966_0000657 3300044684 Bacteria 22017
206 Ga0453684_0052596 3300044712 Bacteria 5324
207 Ga0495627_000002 3300046453 Bacteria 903861
208 Ga0495627_006460 3300046453 Bacteria 4592
209 Ga0495627_012926 3300046453 Unclassified 2947
210 Ga0495638_0000001 3300046460 Bacteria 1114121
211 Ga0495651_0294932 3300046462 Bacteria 1090
212 Ga0495585_0000041 3300046492 Bacteria 126995
213 Ga0495596_0045702 3300046500 Bacteria 1721
214 Ga0495607_0003490 3300046501 Bacteria 12033
215 Ga0495606_0036299 3300046507 Bacteria 3358
216 Ga0495606_0075624 3300046507 Bacteria 2107
217 Ga0495610_0000149 3300046512 Bacteria 77136
218 Ga0495610_0011128 3300046512 Bacteria 5524
219 Ga0495632_0001465 3300046519 Bacteria 19620
220 Ga0495643_0007177 3300046522 Bacteria 7227
221 Ga0495643_0009422 3300046522 Bacteria 6071
222 Ga0495648_0000542 3300046524 Bacteria 40768
223 Ga0495648_0001150 3300046524 Bacteria 26778
224 Ga0495648_0001429 3300046524 Bacteria 23367
225 Ga0495648_0008376 3300046524 Bacteria 8148
226 Ga0495663_0000140 3300046525 Bacteria 29344
227 Ga0495654_0000001 3300046530 Bacteria 1513197
228 Ga0495609_0000619 3300046538 Bacteria 27649
229 Ga0495633_0001066 3300046558 Bacteria 22216
230 Ga0495625_0002584 3300046660 Bacteria 19444
231 Ga0495661_0001723 3300046665 Bacteria 17703
232 Ga0495686_0000125 3300047472 Bacteria 158834
233 Ga0495686_0006068 3300047472 Bacteria 9370
234 Ga0495686_0100430 3300047472 Bacteria 1746
235 Ga0496102_0011876 3300048905 Bacteria 7519
236 Ga0496102_0268254 3300048905 Bacteria 1609
237 Ga0496115_0006413 3300048918 Bacteria 8619
238 Ga0496115_0077427 3300048918 Unclassified 2704
239 Ga0496116_0000012 3300048919 Bacteria 611365
240 Ga0496116_0005740 3300048919 Bacteria 11415
241 Ga0496117_0000023 3300048920 Bacteria 438585
242 Ga0496117_0000112 3300048920 Bacteria 184013
243 Ga0496118_0002047 3300048921 Bacteria 28502
244 Ga0496118_0007606 3300048921 Bacteria 11423
245 Ga0496118_0060392 3300048921 Bacteria 2815
246 Ga0496119_0000002 3300048922 Bacteria 738385
247 Ga0496119_0000010 3300048922 Bacteria 438534
248 Ga0496121_0028475 3300048924 Bacteria 5199
249 Ga0496122_0000465 3300048925 Bacteria 84396
250 Ga0496122_0001002 3300048925 Bacteria 50067
251 Ga0496122_0009457 3300048925 Bacteria 10266
252 Ga0496123_0003369 3300048926 Bacteria 18069
253 Ga0496123_0004027 3300048926 Bacteria 15855
254 Ga0496123_0060237 3300048926 Bacteria 2449
255 Ga0496124_0005352 3300048927 Bacteria 14488
256 Ga0496124_0006682 3300048927 Bacteria 12488
257 Ga0496125_0059044 3300048928 Bacteria 3094
258 Ga0496125_0063496 3300048928 Bacteria 2944
259 Ga0496125_0179008 3300048928 Bacteria 1415
260 Ga0496126_0004660 3300048929 Bacteria 16215
261 Ga0496126_0084118 3300048929 Bacteria 2807
262 Ga0501034_0001371 3300049571 Bacteria 32769
263 Ga0501198_003150 3300049649 Bacteria 2243
264 Ga0501223_000799 3300049663 Bacteria 7466
265 Ga0501249_000309 3300049679 Bacteria 13691
266 Ga0501249_004191 3300049679 Bacteria 2922
267 Ga0501241_005461 3300049758 Bacteria 2368
268 Ga0501264_000852 3300049761 Bacteria 3950
269 Ga0501266_000011 3300049763 Bacteria 197280
270 Ga0501269_000001 3300049766 Bacteria 122581
271 Ga0501280_000151 3300049776 Bacteria 17965
272 nmdc:mga0k408_18128_c1 3300050493 Bacteria 3926
273 nmdc:mga0k408_91_c1 3300050493 Bacteria 42962
274 Ga0500647_0076399 3300053091 Bacteria 1607
275 Ga0500647_0128643 3300053091 Bacteria 1195
276 Ga0500608_005267 3300053122 Bacteria 5118
277 Ga0500616_0015059 3300053153 Viruses 4430
278 Ga0500624_000459 3300053157 Bacteria 12195

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300046522 Ga0495643_0009422 Ga0495643_0009422_32_976 269
2 iso_pu_bacteria 2842083920 2842087553 272
3 3300050493 nmdc:mga0k408_18128_c1 nmdc:mga0k408_18128_c1_854_2041 282
4 3300041413 Ga0439465_0000202 Ga0439465_0000202_14657_15649 283
5 3300046519 Ga0495632_0001465 Ga0495632_0001465_11375_12367 284
6 3300013102 Ga0157371_10000255 Ga0157371_1000025517 285
7 3300044684 Ga0466966_0000657 Ga0466966_0000657_16044_17237 285
8 3300048921 Ga0496118_0060392 Ga0496118_0060392_1318_2319 287
9 3300048925 Ga0496122_0000465 Ga0496122_0000465_51710_52702 287
10 3300048926 Ga0496123_0060237 Ga0496123_0060237_1202_2194 287
11 3300003323 rootH1_10027911 rootH1_1002791117 288
12 iso_pu_bacteria 2905999023 2906000365 289
13 3300046538 Ga0495609_0000619 Ga0495609_0000619_11606_12628 291
14 3300003320 rootH2_10075948 rootH2_100759487 292
15 3300003322 rootL2_10120049 rootL2_101200492 292
16 3300013104 Ga0157370_10000366 Ga0157370_100003663 292
17 3300046462 Ga0495651_0294932 Ga0495651_0294932_22_1074 293
18 3300046500 Ga0495596_0045702 Ga0495596_0045702_600_1535 293
19 3300046530 Ga0495654_0000001 Ga0495654_0000001_1380854_1381876 293
20 3300053091 Ga0500647_0128643 Ga0500647_0128643_29_1081 293
21 3300005337 Ga0070682_100000172 Ga0070682_1000001723 294
22 3300013104 Ga0157370_10000068 Ga0157370_1000006867 294
23 3300013104 Ga0157370_10002323 Ga0157370_1000232321 294
24 3300013104 Ga0157370_10076549 Ga0157370_100765493 294
25 3300013104 Ga0157370_10472760 Ga0157370_104727601 294
26 3300013105 Ga0157369_10004190 Ga0157369_1000419021 294
27 3300013308 Ga0157375_10000913 Ga0157375_1000091318 294
28 3300014497 Ga0182008_10000864 Ga0182008_1000086424 294
29 3300031911 Ga0307412_10000117 Ga0307412_1000011736 294
30 3300032002 Ga0307416_100000082 Ga0307416_10000008238 294
31 3300032004 Ga0307414_10345894 Ga0307414_103458942 294
32 3300046525 Ga0495663_0000140 Ga0495663_0000140_5967_6989 294
33 3300046530 Ga0495654_0000001 Ga0495654_0000001_1123079_1124101 294
34 3300048927 Ga0496124_0005352 Ga0496124_0005352_2240_3232 294
35 3300044673 Ga0453683_0122030 Ga0453683_0122030_434_1438 295
36 3300046453 Ga0495627_000002 Ga0495627_000002_76206_77228 295
37 3300047472 Ga0495686_0006068 Ga0495686_0006068_6581_7603 295
38 3300048918 Ga0496115_0006413 Ga0496115_0006413_5354_6361 295
39 3300048929 Ga0496126_0004660 Ga0496126_0004660_8576_9583 295
40 3300001915 JGI24741J21665_1010306 JGI24741J21665_10103062 296
41 3300005289 Ga0065704_10232523 Ga0065704_102325231 296
42 3300005293 Ga0065715_10093902 Ga0065715_100939025 296
43 3300005337 Ga0070682_100000447 Ga0070682_10000044711 296
44 3300005339 Ga0070660_100094485 Ga0070660_1000944852 296
45 3300009036 Ga0105244_10000035 Ga0105244_1000003593 296
46 3300013104 Ga0157370_10000565 Ga0157370_1000056518 296
47 3300013104 Ga0157370_10024743 Ga0157370_100247435 296
48 3300013104 Ga0157370_10082136 Ga0157370_100821363 296
49 3300013105 Ga0157369_10000181 Ga0157369_1000018167 296
50 3300014497 Ga0182008_10004380 Ga0182008_1000438011 296
51 3300015261 Ga0182006_1000048 Ga0182006_100004853 296
52 3300025728 Ga0207655_1000623 Ga0207655_100062327 296
53 3300025919 Ga0207657_10066181 Ga0207657_100661812 296
54 3300031548 Ga0307408_100016987 Ga0307408_1000169875 296
55 3300031852 Ga0307410_10000062 Ga0307410_1000006234 296
56 3300031901 Ga0307406_10000087 Ga0307406_1000008719 296
57 3300031911 Ga0307412_10084793 Ga0307412_100847933 296
58 3300042004 Ga0439445_0000344 Ga0439445_0000344_3573_4565 296
59 3300049679 Ga0501249_000309 Ga0501249_000309_10376_11371 296
60 3300049679 Ga0501249_004191 Ga0501249_004191_247_1242 296
61 3300049763 Ga0501266_000011 Ga0501266_000011_58303_59298 296
62 3300049776 Ga0501280_000151 Ga0501280_000151_10173_11168 296
63 3300032004 Ga0307414_10000001 Ga0307414_10000001646 297
64 3300046453 Ga0495627_006460 Ga0495627_006460_2341_3351 297
65 3300003323 rootH1_10279517 rootH1_102795172 298
66 3300006942 Ga0099824_1022285 Ga0099824_10222855 299
67 3300032005 Ga0307411_10000004 Ga0307411_10000004228 299
68 3300047472 Ga0495686_0000125 Ga0495686_0000125_117619_118611 299
69 3300048905 Ga0496102_0011876 Ga0496102_0011876_749_1753 299
70 3300048929 Ga0496126_0084118 Ga0496126_0084118_260_1282 299
71 3300049766 Ga0501269_000001 Ga0501269_000001_33826_34860 299
72 3300028800 Ga0265338_10059316 Ga0265338_100593162 300
73 3300046507 Ga0495606_0075624 Ga0495606_0075624_470_1465 301
74 3300046660 Ga0495625_0002584 Ga0495625_0002584_803_1798 301
75 3300003323 rootH1_10178418 rootH1_101784183 303
76 3300003323 rootH1_10077255 rootH1_100772553 304
77 3300005843 Ga0068860_100000034 Ga0068860_100000034129 304
78 3300010375 Ga0105239_10022746 Ga0105239_100227468 304
79 3300028381 Ga0268264_10000052 Ga0268264_10000052178 304
80 3300028786 Ga0307517_10022497 Ga0307517_100224976 304
81 3300009036 Ga0105244_10000080 Ga0105244_1000008060 305
82 3300013105 Ga0157369_10319908 Ga0157369_103199082 305
83 3300048919 Ga0496116_0000012 Ga0496116_0000012_472334_473356 305
84 3300048920 Ga0496117_0000112 Ga0496117_0000112_119569_120591 305
85 3300048921 Ga0496118_0007606 Ga0496118_0007606_2041_3063 305
86 3300048922 Ga0496119_0000002 Ga0496119_0000002_458301_459323 305
87 3300048924 Ga0496121_0028475 Ga0496121_0028475_487_1509 305
88 3300048925 Ga0496122_0009457 Ga0496122_0009457_2671_3693 305
89 3300048926 Ga0496123_0004027 Ga0496123_0004027_13384_14406 305
90 3300048927 Ga0496124_0006682 Ga0496124_0006682_8395_9417 305
91 3300048928 Ga0496125_0063496 Ga0496125_0063496_735_1757 305
92 iso_pu_bacteria 2511231000 2511234675 306
93 iso_pu_bacteria 2519899754 2520879256 306
94 iso_pu_bacteria 2519899754 2520879742 306
95 iso_pu_bacteria 2582581278 2585141802 306
96 iso_pu_bacteria 2582581281 2585158203 306
97 iso_pu_bacteria 2582581282 2585162414 306
98 iso_pu_bacteria 2585428061 2587751362 306
99 iso_pu_bacteria 2585428061 2587752114 306
100 iso_pu_bacteria 2585428115 2587941851 306
101 iso_pu_bacteria 2585428115 2587941940 306
102 iso_pu_bacteria 2585428115 2587943446 306
103 iso_pu_bacteria 2585428182 2588209136 306
104 iso_pu_bacteria 2585428183 2588212743 306
105 iso_pu_bacteria 2585428185 2588222539 306
106 iso_pu_bacteria 2588253712 2588446076 306
107 iso_pu_bacteria 2588254257 2590612577 306
108 iso_pu_bacteria 2643221600 2644013164 306
109 iso_pu_bacteria 2728369107 2729199367 306
110 iso_pu_bacteria 2728369107 2729202274 306
111 iso_pu_bacteria 2765235839 2765576555 306
112 iso_pu_bacteria 2765235839 2765576637 306
113 iso_pu_bacteria 2816332188 2816872485 306
114 iso_pu_bacteria 2816332188 2816873194 306
115 iso_pu_bacteria 2833640130 2833640799 306
116 iso_pu_bacteria 2857618242 2857618561 306
117 iso_pu_bacteria 2889290771 2889291117 306
118 iso_pu_bacteria 2889290771 2889292222 306
119 iso_pu_bacteria 2889290771 2889292911 306
120 iso_pu_bacteria 2895498888 2895503127 306
121 iso_pu_bacteria 2904780799 2904784938 306
122 iso_pu_bacteria 2919399522 2919399627 306
123 iso_pu_bacteria 2919399522 2919400375 306
124 iso_pu_bacteria 2919683626 2919684365 306
125 iso_pu_bacteria 8036736890 8036737420 306
126 iso_pu_bacteria 8036736890 8036739206 306
127 iso_pu_bacteria 8055592153 8055592379 306
128 3300013105 Ga0157369_10000419 Ga0157369_1000041940 307
129 3300025728 Ga0207655_1000008 Ga0207655_100000880 307
130 3300005548 Ga0070665_100000680 Ga0070665_10000068028 309
131 3300025250 Ga0209026_1000254 Ga0209026_10002547 309
132 3300028379 Ga0268266_10000071 Ga0268266_10000071169 309
133 3300009148 Ga0105243_10000104 Ga0105243_1000010414 310
134 3300025935 Ga0207709_10000144 Ga0207709_1000014433 310
135 3300028786 Ga0307517_10136685 Ga0307517_101366852 310
136 3300031911 Ga0307412_10000028 Ga0307412_1000002863 310
137 3300032004 Ga0307414_10000221 Ga0307414_1000022115 310
138 3300032004 Ga0307414_10087669 Ga0307414_100876694 310
139 3300048905 Ga0496102_0268254 Ga0496102_0268254_36_1055 310
140 3300048919 Ga0496116_0005740 Ga0496116_0005740_8782_9801 310
141 3300048920 Ga0496117_0000023 Ga0496117_0000023_89175_90194 310
142 3300048921 Ga0496118_0002047 Ga0496118_0002047_153_1172 310
143 3300048922 Ga0496119_0000010 Ga0496119_0000010_348402_349421 310
144 3300048928 Ga0496125_0059044 Ga0496125_0059044_1899_2918 310
145 iso_pu_bacteria 2884791551 2884797268 310
146 3300047472 Ga0495686_0100430 Ga0495686_0100430_202_1398 313
147 iso_pu_bacteria 2511231000 2511232107 313
148 iso_pu_bacteria 2582581281 2585155950 313
149 iso_pu_bacteria 2582581282 2585160126 313
150 3300048918 Ga0496115_0077427 Ga0496115_0077427_1566_2666 316
151 3300009101 Ga0105247_10082657 Ga0105247_100826573 318
152 3300009545 Ga0105237_10000800 Ga0105237_100008002 319
153 3300025914 Ga0207671_10000401 Ga0207671_100004012 319
154 3300003323 rootH1_10039926 rootH1_1003992628 320
155 3300013306 Ga0163162_10000229 Ga0163162_1000022924 322
156 3300046512 Ga0495610_0011128 Ga0495610_0011128_4197_5414 322
157 3300046665 Ga0495661_0001723 Ga0495661_0001723_6963_8180 322
158 3300003322 rootL2_10099950 rootL2_100999503 323
159 3300046460 Ga0495638_0000001 Ga0495638_0000001_668074_669252 324
160 3300003794 Ga0055531_10000077 Ga0055531_1000007737 326
161 3300013306 Ga0163162_10003398 Ga0163162_100033984 326
162 3300025304 Ga0209257_1000007 Ga0209257_1000007646 326
163 3300005288 Ga0065714_10005247 Ga0065714_100052473 327
164 3300005288 Ga0065714_10072240 Ga0065714_100722403 327
165 3300037312 Ga0395899_0032657 Ga0395899_0032657_460_1599 327
166 3300037418 Ga0395900_0002909 Ga0395900_0002909_16258_17397 327
167 3300037466 Ga0395898_0027949 Ga0395898_0027949_2950_4089 327
168 3300038443 Ga0395901_0062519 Ga0395901_0062519_1711_2850 327
169 3300005530 Ga0070679_100000578 Ga0070679_1000005786 328
170 3300025921 Ga0207652_10000027 Ga0207652_1000002737 328
171 3300013102 Ga0157371_10120072 Ga0157371_101200722 329
172 3300005288 Ga0065714_10072426 Ga0065714_100724264 330
173 3300013104 Ga0157370_10000418 Ga0157370_1000041849 330
174 3300049758 Ga0501241_005461 Ga0501241_005461_1020_2222 331
175 3300025913 Ga0207695_10001751 Ga0207695_1000175111 332
176 3300005539 Ga0068853_100135348 Ga0068853_1001353482 333
177 3300031251 Ga0265327_10047366 Ga0265327_100473662 333
178 3300031548 Ga0307408_100098275 Ga0307408_1000982752 333
179 3300031911 Ga0307412_10018099 Ga0307412_100180993 333
180 3300032002 Ga0307416_100117638 Ga0307416_1001176382 333
181 3300037312 Ga0395899_0000002 Ga0395899_0000002_1203564_1204778 334
182 3300005614 Ga0068856_100000536 Ga0068856_1000005369 335
183 3300026078 Ga0207702_10000701 Ga0207702_100007016 335
184 iso_pu_bacteria 2522125168 2522549000 335
185 3300001990 JGI24737J22298_10003187 JGI24737J22298_100031873 336
186 3300002067 JGI24735J21928_10000005 JGI24735J21928_10000005292 336
187 3300003320 rootH2_10029332 rootH2_100293322 336
188 3300005288 Ga0065714_10086511 Ga0065714_100865113 336
189 3300005458 Ga0070681_10057632 Ga0070681_100576322 336
190 3300013102 Ga0157371_10046325 Ga0157371_100463252 336
191 3300013307 Ga0157372_10000326 Ga0157372_1000032627 336
192 3300025912 Ga0207707_10028693 Ga0207707_100286934 336
193 3300025921 Ga0207652_10029742 Ga0207652_100297422 336
194 3300031911 Ga0307412_10000063 Ga0307412_1000006377 336
195 3300049649 Ga0501198_003150 Ga0501198_003150_319_1485 336
196 3300003781 Ga0055536_1002175 Ga0055536_10021755 337
197 3300005262 Ga0065165_1000142 Ga0065165_100014231 337
198 3300025292 Ga0209676_1000116 Ga0209676_1000116131 337
199 3300031731 Ga0307405_10002946 Ga0307405_100029465 337
200 3300031731 Ga0307405_10032851 Ga0307405_100328514 337
201 3300032004 Ga0307414_10000865 Ga0307414_1000086511 337
202 3300005530 Ga0070679_100333873 Ga0070679_1003338732 338
203 3300013102 Ga0157371_10016893 Ga0157371_100168936 338
204 3300046524 Ga0495648_0000542 Ga0495648_0000542_4297_5454 338
205 3300046524 Ga0495648_0001150 Ga0495648_0001150_20552_21706 338
206 3300049663 Ga0501223_000799 Ga0501223_000799_209_1417 338
207 3300003354 JGI25160J50197_1003122 JGI25160J50197_10031229 340
208 3300003354 JGI25160J50197_1004216 JGI25160J50197_10042166 340
209 3300005288 Ga0065714_10066628 Ga0065714_100666282 340
210 3300025302 Ga0207426_1000040 Ga0207426_1000040299 340
211 3300031548 Ga0307408_100001340 Ga0307408_1000013408 340
212 3300053091 Ga0500647_0076399 Ga0500647_0076399_40_1257 340
213 3300005563 Ga0068855_100403360 Ga0068855_1004033602 341
214 3300013100 Ga0157373_10054481 Ga0157373_100544812 341
215 3300013102 Ga0157371_10001798 Ga0157371_1000179817 341
216 3300013102 Ga0157371_10006282 Ga0157371_100062829 341
217 3300013104 Ga0157370_10007419 Ga0157370_100074197 341
218 3300037312 Ga0395899_0018587 Ga0395899_0018587_2994_4133 341
219 3300037466 Ga0395898_0193086 Ga0395898_0193086_520_1659 341
220 3300038443 Ga0395901_0001896 Ga0395901_0001896_6947_8086 341
221 3300046524 Ga0495648_0008376 Ga0495648_0008376_3448_4641 341
222 3300049761 Ga0501264_000852 Ga0501264_000852_2105_3262 341
223 3300013307 Ga0157372_10140286 Ga0157372_101402861 342
224 3300013102 Ga0157371_10030167 Ga0157371_100301674 343
225 3300013306 Ga0163162_10001422 Ga0163162_1000142218 343
226 3300046507 Ga0495606_0036299 Ga0495606_0036299_441_1658 343
227 3300046522 Ga0495643_0007177 Ga0495643_0007177_306_1412 343
228 3300025295 Ga0209564_1000127 Ga0209564_100012745 344
229 3300005329 Ga0070683_100008526 Ga0070683_1000085267 345
230 3300005535 Ga0070684_100054284 Ga0070684_1000542844 345
231 3300013100 Ga0157373_10000299 Ga0157373_1000029939 345
232 3300013102 Ga0157371_10178716 Ga0157371_101787162 345
233 3300013307 Ga0157372_10049700 Ga0157372_100497005 345
234 3300025944 Ga0207661_10019375 Ga0207661_100193754 345
235 3300053153 Ga0500616_0015059 Ga0500616_0015059_1654_2853 345
236 3300013105 Ga0157369_10000742 Ga0157369_1000074223 346
237 3300013307 Ga0157372_10167670 Ga0157372_101676702 346
238 3300032004 Ga0307414_10000923 Ga0307414_1000092314 346
239 3300046501 Ga0495607_0003490 Ga0495607_0003490_3821_5017 346
240 3300005288 Ga0065714_10071892 Ga0065714_100718924 347
241 3300005366 Ga0070659_100110520 Ga0070659_1001105202 347
242 3300005563 Ga0068855_100018113 Ga0068855_1000181135 347
243 3300006852 Ga0075433_10205214 Ga0075433_102052142 347
244 3300009094 Ga0111539_10178666 Ga0111539_101786663 347
245 3300053122 Ga0500608_005267 Ga0500608_005267_2981_4186 348
246 3300001989 JGI24739J22299_10001500 JGI24739J22299_100015004 349
247 3300003323 rootH1_10038614 rootH1_100386142 349
248 3300013307 Ga0157372_10006685 Ga0157372_100066856 349
249 3300028794 Ga0307515_10067608 Ga0307515_100676086 349
250 3300046524 Ga0495648_0001429 Ga0495648_0001429_17194_18378 349
251 iso_pu_bacteria 2884933994 2884935329 349
252 iso_pu_bacteria 2928078545 2928081496 349
253 3300013104 Ga0157370_10002245 Ga0157370_100022458 350
254 3300025250 Ga0209026_1000684 Ga0209026_100068421 350
255 iso_pu_bacteria 2775506987 2776612219 350
256 iso_pu_bacteria 2884791551 2884791721 351
257 3300025297 Ga0209758_1002621 Ga0209758_100262115 352
258 3300005366 Ga0070659_100072356 Ga0070659_1000723562 353
259 3300013102 Ga0157371_10000192 Ga0157371_1000019267 353
260 3300013104 Ga0157370_10000205 Ga0157370_1000020543 353
261 3300025904 Ga0207647_10000120 Ga0207647_1000012025 353
262 3300025904 Ga0207647_10000140 Ga0207647_1000014013 353
263 3300025949 Ga0207667_10098533 Ga0207667_100985334 353
264 3300046492 Ga0495585_0000041 Ga0495585_0000041_86360_87571 353
265 3300053157 Ga0500624_000459 Ga0500624_000459_10892_12100 353
266 iso_pu_bacteria 2852627209 2852630057 354
267 iso_pu_bacteria 2902048731 2902049137 354
268 iso_pu_bacteria 2939664404 2939668026 354
269 3300003316 rootH1_10040517 rootH1_100405174 355
270 3300005290 Ga0065712_10081757 Ga0065712_100817572 355
271 3300015682 Ga0183373_1010 Ga0183373_101091 355
272 3300025250 Ga0209026_1000912 Ga0209026_100091210 355
273 3300025960 Ga0207651_10037448 Ga0207651_100374482 355
274 iso_pu_bacteria 2849281842 2849287002 355
275 iso_pu_bacteria 2902048731 2902051854 355
276 3300003323 rootH1_10000566 rootH1_10000566103 356
277 3300006195 Ga0075366_10000054 Ga0075366_1000005436 356
278 3300050493 nmdc:mga0k408_91_c1 nmdc:mga0k408_91_c1_32442_33659 356
279 3300002737 JGI25162J39368_1000672 JGI25162J39368_100067219 357
280 3300014326 Ga0157380_10051556 Ga0157380_100515564 357
281 3300044712 Ga0453684_0052596 Ga0453684_0052596_1316_2518 357
282 3300005288 Ga0065714_10064472 Ga0065714_1006447223 358
283 3300005366 Ga0070659_100030573 Ga0070659_1000305732 358
284 3300005618 Ga0068864_100013620 Ga0068864_1000136206 358
285 3300006163 Ga0070715_10005716 Ga0070715_100057164 358
286 3300009176 Ga0105242_10105539 Ga0105242_101055392 358
287 3300025250 Ga0209026_1002947 Ga0209026_10029474 358
288 3300025905 Ga0207685_10002585 Ga0207685_100025854 358
289 3300025932 Ga0207690_10150907 Ga0207690_101509072 358
290 3300026075 Ga0207708_10029457 Ga0207708_100294574 358
291 3300026095 Ga0207676_10003410 Ga0207676_1000341015 358
292 3300031251 Ga0265327_10073924 Ga0265327_100739242 358
293 3300049571 Ga0501034_0001371 Ga0501034_0001371_25190_26359 358
294 iso_pu_bacteria 2739367663 2739644473 358
295 iso_pu_bacteria 2818991437 2819549233 358
296 iso_pu_bacteria 2928147474 2928148229 358
297 3300003323 rootH1_10363444 rootH1_103634444 359
298 3300005288 Ga0065714_10064854 Ga0065714_1006485411 359
299 3300005985 Ga0081539_10019334 Ga0081539_100193343 359
300 3300013100 Ga0157373_10000048 Ga0157373_1000004828 359
301 3300013104 Ga0157370_10000072 Ga0157370_1000007244 359
302 3300013104 Ga0157370_10003516 Ga0157370_1000351611 359
303 3300013104 Ga0157370_10006763 Ga0157370_100067638 359
304 3300013307 Ga0157372_10389430 Ga0157372_103894302 359
305 3300031548 Ga0307408_100000225 Ga0307408_10000022530 359
306 3300031548 Ga0307408_100000573 Ga0307408_10000057320 359
307 3300031548 Ga0307408_100198372 Ga0307408_1001983722 359
308 3300031903 Ga0307407_10000040 Ga0307407_1000004039 359
309 3300032002 Ga0307416_100000009 Ga0307416_100000009149 359
310 3300032004 Ga0307414_10000862 Ga0307414_100008625 359
311 3300033179 Ga0307507_10001092 Ga0307507_1000109238 359
312 3300046512 Ga0495610_0000149 Ga0495610_0000149_56937_58148 359
313 iso_pu_bacteria 2738543023 2739304762 359
314 iso_pu_bacteria 2904445276 2904447539 359
315 iso_pu_bacteria 2954016120 2954018411 359
316 3300003781 Ga0055536_1000008 Ga0055536_1000008269 360
317 3300005288 Ga0065714_10064434 Ga0065714_1006443473 360
318 3300013104 Ga0157370_10000314 Ga0157370_1000031439 360
319 3300014497 Ga0182008_10000006 Ga0182008_1000000620 360
320 3300014969 Ga0157376_10047226 Ga0157376_100472262 360
321 3300025292 Ga0209676_1000042 Ga0209676_1000042265 360
322 3300025298 Ga0209050_1000035 Ga0209050_1000035264 360
323 3300046453 Ga0495627_012926 Ga0495627_012926_1541_2758 360
324 3300046558 Ga0495633_0001066 Ga0495633_0001066_398_1615 360
325 3300048925 Ga0496122_0001002 Ga0496122_0001002_19531_20721 360
326 3300048926 Ga0496123_0003369 Ga0496123_0003369_9524_10714 360
327 3300048928 Ga0496125_0179008 Ga0496125_0179008_39_1229 360
328 iso_pu_bacteria 2738541283 2738757327 360
329 3300013308 Ga0157375_10083030 Ga0157375_100830304 361
330 iso_pu_bacteria 2902048731 2902052662 361
331 3300013104 Ga0157370_10000492 Ga0157370_1000049224 362
332 2162886007 SwRhRL2b_contig_2418591 SwRhRL2b_0841.00006350 363
333 3300005288 Ga0065714_10099409 Ga0065714_100994092 363
334 3300005289 Ga0065704_10000199 Ga0065704_10000199191 363
335 3300013104 Ga0157370_10010782 Ga0157370_100107823 363
336 3300005288 Ga0065714_10120820 Ga0065714_101208201 365
337 2162886007 SwRhRL2b_contig_1596339 SwRhRL2b_0713.00000740 366
338 3300005289 Ga0065704_10070168 Ga0065704_1007016883 366

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07863

CtnDOT_TraJ

Homologues of TraJ from Bacteroides conjugative transposon

324

389

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
7o3v-assembly1.cif.gz_J stalk complex structure (trwj/virb5-trwi/virb6) from the fully-assembled r388 type iv secretion system determined by cryo-em. 0.5867 33 315
7o3v-assembly1.cif.gz_J stalk complex structure (trwj/virb5-trwi/virb6) from the fully-assembled r388 type iv secretion system determined by cryo-em. 0.5742 33 315
7o3v-assembly1.cif.gz_H stalk complex structure (trwj/virb5-trwi/virb6) from the fully-assembled r388 type iv secretion system determined by cryo-em. 0.5409 102 315
7u8r-assembly1.cif.gz_h structure of porcine kidney v-atpase with sidk, rotary state 3 0.5319 113 307
7uwa-assembly1.cif.gz_c citrus v-atpase state 1, h in contact with subunits ab 0.527 113 307
ID Description Score Start End Superfamily
af_Q5AHB8_2_109_1.10.287.1490 Mainly Alpha;Orthogonal Bundle;Helix Hairpins; 0.4561 110 213 1.10.287.1490
af_A0A1B0GXA3_1_166_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.4525 191 307 1.20.1070.10
af_A4I051_11_161_1.20.120.610 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);lithium bound rotor ring of v- atpase 0.4487 112 307 1.20.120.610
af_F1QIS1_3_136_1.20.120.550 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Membrane associated eicosanoid/glutathione metabolism-like domain 0.4433 222 309 1.20.120.550
af_A4I051_11_161_1.20.120.610 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);lithium bound rotor ring of v- atpase 0.4379 112 307 1.20.120.610
ID Description Score Start End GO Terms
AF-A0A1M3H8F4-F1-model_v4 Conjugative transposon protein TraJ 0.8704 29 326 GO:0016020
AF-A0A7Y4VJI8-F1-model_v4 Conjugative transposon protein TraJ 0.8539 13 317 GO:0016020
AF-A0A1G7MHC0-F1-model_v4 Bacteroides conjugative transposon TraJ protein 0.8338 27 330 GO:0016020
AF-A0A5N7ZBL5-F1-model_v4 Conjugative transposon protein TraJ 0.8332 34 315 GO:0016020
AF-A0A1M3H8F4-F1-model_v4 Conjugative transposon protein TraJ 0.8151 29 326 GO:0016020

Feature Viewer

pLDDT pTM Quality
67.91 0.58 Medium
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Predicted Structure (AlphaFold2)

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